AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0632030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632030 MtrunA17_Chr8g0384351 91.892 185 8 3 1 178 1 185 1.32e-119 335
Msa0632030 MtrunA17_Chr3g0130321 51.707 205 66 9 7 178 4 208 1.39e-57 179
Msa0632030 MtrunA17_Chr4g0050701 46.032 189 74 6 10 178 11 191 9.00e-49 156
Msa0632030 MtrunA17_Chr4g0042561 38.021 192 92 7 2 169 1 189 4.16e-31 113
Msa0632030 MtrunA17_Chr2g0318101 37.017 181 81 5 10 157 15 195 2.74e-30 113
Msa0632030 MtrunA17_Chr8g0384721 42.405 158 68 6 5 139 2 159 2.96e-29 108
Msa0632030 MtrunA17_Chr5g0417791 37.222 180 88 6 8 162 1 180 4.39e-29 108
Msa0632030 MtrunA17_Chr7g0214071 40.244 164 73 7 8 150 13 172 1.80e-28 106
Msa0632030 MtrunA17_Chr3g0124761 36.872 179 91 6 6 162 3 181 1.98e-27 104
Msa0632030 MtrunA17_Chr2g0326361 36.257 171 83 5 3 147 7 177 9.43e-27 103
Msa0632030 MtrunA17_Chr7g0263931 38.728 173 79 7 6 152 7 178 1.02e-26 103
Msa0632030 MtrunA17_Chr4g0047841 37.288 177 66 6 10 141 15 191 1.03e-25 100
Msa0632030 MtrunA17_Chr3g0130731 38.854 157 74 6 5 139 2 158 2.56e-25 99.0
Msa0632030 MtrunA17_Chr8g0359921 39.634 164 69 7 6 143 10 169 6.85e-25 98.6
Msa0632030 MtrunA17_Chr3g0091921 36.810 163 81 5 10 150 16 178 8.33e-25 97.8
Msa0632030 MtrunA17_Chr2g0318081 37.975 158 78 5 6 143 12 169 1.00e-24 98.2
Msa0632030 MtrunA17_Chr7g0252971 37.059 170 73 7 2 138 1 169 1.31e-24 97.8
Msa0632030 MtrunA17_Chr6g0484441 38.000 150 75 5 10 141 5 154 3.92e-24 96.3
Msa0632030 MtrunA17_Chr4g0060931 38.411 151 71 5 10 138 17 167 6.18e-24 96.3
Msa0632030 MtrunA17_Chr1g0147421 40.667 150 68 5 10 138 27 176 2.92e-23 94.4
Msa0632030 MtrunA17_Chr3g0131911 37.195 164 71 7 9 142 13 174 3.39e-23 92.0
Msa0632030 MtrunA17_Chr4g0017921 33.508 191 102 8 4 169 2 192 6.33e-23 93.6
Msa0632030 MtrunA17_Chr3g0139331 36.310 168 87 5 10 157 11 178 8.90e-23 92.8
Msa0632030 MtrunA17_Chr8g0385991 34.810 158 78 5 9 141 13 170 3.28e-22 89.4
Msa0632030 MtrunA17_Chr3g0109821 38.312 154 72 6 8 138 4 157 4.02e-22 92.4
Msa0632030 MtrunA17_Chr2g0309331 34.118 170 90 7 1 148 1 170 7.58e-22 90.5
Msa0632030 MtrunA17_Chr1g0183741 35.897 156 82 5 8 145 8 163 3.70e-21 87.4
Msa0632030 MtrunA17_Chr7g0253011 31.841 201 103 6 3 177 10 202 4.68e-21 88.6
Msa0632030 MtrunA17_Chr2g0312321 36.601 153 72 7 8 138 9 158 8.38e-21 87.0
Msa0632030 MtrunA17_Chr6g0481091 36.774 155 76 6 6 138 2 156 8.42e-21 85.9
Msa0632030 MtrunA17_Chr6g0453451 33.136 169 91 5 4 150 14 182 1.73e-20 86.3
Msa0632030 MtrunA17_Chr7g0261411 36.735 147 75 5 8 136 8 154 2.22e-20 85.9
Msa0632030 MtrunA17_Chr5g0433781 37.179 156 74 7 6 138 2 156 2.46e-20 87.4
Msa0632030 MtrunA17_Chr1g0197351 34.395 157 75 6 10 138 42 198 4.18e-20 86.7
Msa0632030 MtrunA17_Chr2g0309891 31.868 182 99 8 6 162 2 183 4.36e-20 85.5
Msa0632030 MtrunA17_Chr5g0405211 32.812 192 97 9 10 173 8 195 7.69e-20 85.1
Msa0632030 MtrunA17_Chr4g0018391 33.679 193 99 9 10 178 7 194 9.39e-20 84.7
Msa0632030 MtrunA17_Chr2g0316971 37.908 153 71 6 10 138 23 175 1.03e-19 85.1
Msa0632030 MtrunA17_Chr8g0372121 35.152 165 82 8 10 151 6 168 1.34e-19 84.0
Msa0632030 MtrunA17_Chr5g0398971 35.256 156 76 7 10 141 7 161 1.89e-19 84.0
Msa0632030 MtrunA17_Chr4g0056541 34.641 153 79 6 10 141 7 159 1.36e-18 81.6
Msa0632030 MtrunA17_Chr6g0453131 33.537 164 75 7 10 141 15 176 1.81e-18 81.6
Msa0632030 MtrunA17_Chr8g0346001 32.515 163 78 7 9 139 14 176 2.67e-18 81.3
Msa0632030 MtrunA17_Chr3g0130101 36.667 150 73 7 12 139 9 158 1.02e-17 79.3
Msa0632030 MtrunA17_Chr4g0076731 35.570 149 71 6 12 138 56 201 1.51e-17 79.0
Msa0632030 MtrunA17_Chr1g0200561 35.849 159 77 8 2 138 13 168 1.55e-17 78.6
Msa0632030 MtrunA17_Chr2g0311651 29.518 166 81 6 12 141 24 189 2.69e-17 77.8
Msa0632030 MtrunA17_Chr8g0345671 34.932 146 74 6 10 135 11 155 3.00e-17 78.2
Msa0632030 MtrunA17_Chr3g0144271 37.500 152 73 5 10 142 23 171 3.17e-17 78.2
Msa0632030 MtrunA17_Chr5g0417001 32.500 160 78 6 12 141 16 175 3.39e-17 77.8
Msa0632030 MtrunA17_Chr8g0361731 31.646 158 77 6 12 138 16 173 5.68e-17 77.4
Msa0632030 MtrunA17_Chr6g0461661 33.962 159 81 5 4 138 12 170 9.29e-17 76.6
Msa0632030 MtrunA17_Chr2g0311661 29.167 168 83 6 12 143 23 190 1.16e-16 75.5
Msa0632030 MtrunA17_Chr5g0400461 33.129 163 80 7 2 138 1 160 1.33e-16 75.9
Msa0632030 MtrunA17_Chr5g0442771 28.049 164 86 5 12 143 20 183 1.33e-16 75.9
Msa0632030 MtrunA17_Chr4g0054791 31.492 181 99 7 8 163 4 184 2.05e-16 75.1
Msa0632030 MtrunA17_Chr7g0217721 33.533 167 76 6 8 139 17 183 2.78e-16 75.1
Msa0632030 MtrunA17_Chr4g0038751 33.939 165 77 8 12 149 17 176 7.34e-16 73.6
Msa0632030 MtrunA17_Chr5g0428991 33.548 155 77 7 9 139 24 176 1.19e-15 73.9
Msa0632030 MtrunA17_Chr7g0217711 34.483 145 71 5 8 128 17 161 3.39e-15 69.7
Msa0632030 MtrunA17_Chr3g0092671 31.847 157 85 6 7 141 2 158 3.45e-15 72.4
Msa0632030 MtrunA17_Chr8g0384201 31.373 153 83 6 9 139 5 157 7.41e-15 71.6
Msa0632030 MtrunA17_Chr8g0364791 31.410 156 79 7 9 139 5 157 2.55e-14 70.1
Msa0632030 MtrunA17_Chr8g0345691 31.507 146 79 6 10 135 12 156 2.71e-14 69.7
Msa0632030 MtrunA17_Chr3g0128151 33.333 153 76 7 10 138 22 172 4.48e-14 69.3
Msa0632030 MtrunA17_Chr8g0345731 32.609 138 70 5 10 124 24 161 4.86e-14 66.6
Msa0632030 MtrunA17_Chr1g0201021 34.127 126 65 5 12 119 21 146 8.54e-12 62.8
Msa0632030 MtrunA17_Chr8g0345711 30.657 137 75 4 10 126 12 148 1.52e-11 60.1
Msa0632030 MtrunA17_Chr3g0113031 44.186 86 33 4 69 139 8 93 2.83e-11 60.5
Msa0632030 MtrunA17_Chr8g0345701 30.719 153 72 5 5 125 2 152 4.06e-11 58.9
Msa0632030 MtrunA17_Chr3g0113001 38.739 111 43 6 66 154 22 129 4.71e-11 60.1
Msa0632030 MtrunA17_Chr4g0026141 31.410 156 78 8 10 136 5 160 9.14e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0632030 AT5G64530.1 46.465 198 67 7 8 177 1 187 5.17e-50 160
Msa0632030 AT5G64530.2 51.261 119 50 3 8 119 1 118 4.45e-36 123
Msa0632030 AT1G61110.1 41.317 167 65 6 10 143 16 182 2.44e-29 110
Msa0632030 AT1G77450.1 41.615 161 72 6 1 139 1 161 7.73e-29 107
Msa0632030 AT2G33480.2 41.026 156 71 6 8 145 13 165 2.05e-28 106
Msa0632030 AT2G33480.1 41.139 158 70 7 8 145 13 167 2.81e-28 106
Msa0632030 AT1G69490.1 37.234 188 86 7 2 165 1 180 1.40e-27 104
Msa0632030 AT1G01720.1 42.581 155 66 6 8 139 5 159 2.85e-27 104
Msa0632030 AT5G39610.1 38.509 161 77 5 1 139 11 171 2.71e-26 101
Msa0632030 AT3G04070.2 37.363 182 80 8 1 150 1 180 5.31e-26 102
Msa0632030 AT5G63790.1 39.623 159 72 6 5 139 45 203 2.21e-25 99.8
Msa0632030 AT1G52890.1 36.686 169 83 6 6 154 10 174 2.36e-25 99.8
Msa0632030 AT5G63790.2 39.623 159 72 6 5 139 55 213 3.06e-25 99.8
Msa0632030 AT3G18400.1 37.419 155 78 5 10 145 5 159 3.24e-25 99.4
Msa0632030 AT5G13180.1 38.608 158 67 7 8 141 12 163 3.66e-25 97.8
Msa0632030 AT3G15500.1 35.088 171 91 5 6 156 10 180 5.09e-25 99.0
Msa0632030 AT2G24430.2 40.000 150 69 5 10 138 16 165 1.54e-24 97.4
Msa0632030 AT2G24430.1 40.000 150 69 5 10 138 16 165 1.54e-24 97.4
Msa0632030 AT5G61430.1 37.821 156 75 5 5 138 11 166 2.14e-24 97.4
Msa0632030 AT5G07680.1 39.073 151 70 5 10 138 17 167 3.01e-24 97.1
Msa0632030 AT3G12977.1 33.140 172 92 6 8 158 16 185 3.42e-24 95.9
Msa0632030 AT5G07680.2 39.073 151 70 5 10 138 3 153 3.45e-24 96.7
Msa0632030 AT4G27410.2 36.000 200 96 9 6 174 10 208 4.64e-24 95.9
Msa0632030 AT5G08790.1 39.623 159 72 6 5 139 2 160 8.99e-24 95.1
Msa0632030 AT3G04070.1 34.343 198 80 8 1 150 1 196 1.25e-23 95.9
Msa0632030 AT1G56010.2 36.129 155 75 6 8 138 17 171 2.79e-23 94.4
Msa0632030 AT3G15510.1 32.308 195 93 6 14 175 21 209 4.95e-23 94.4
Msa0632030 AT5G18270.2 37.107 159 77 5 3 138 14 172 7.54e-23 93.2
Msa0632030 AT3G04060.1 33.333 198 102 8 3 177 13 203 8.66e-23 93.2
Msa0632030 AT5G18270.1 36.478 159 78 5 3 138 14 172 1.90e-22 92.4
Msa0632030 AT4G10350.1 37.267 161 78 7 2 139 1 161 5.96e-22 90.9
Msa0632030 AT1G79580.3 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa0632030 AT1G79580.5 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa0632030 AT1G79580.4 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa0632030 AT1G79580.2 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa0632030 AT1G79580.1 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa0632030 AT3G17730.1 37.419 155 75 6 6 138 2 156 1.52e-21 88.2
Msa0632030 AT5G53950.1 36.207 174 86 7 10 158 17 190 2.03e-21 90.1
Msa0632030 AT4G27410.3 33.784 222 97 11 6 178 10 230 2.37e-21 89.0
Msa0632030 AT1G33280.1 36.538 156 79 6 4 139 2 157 3.42e-21 88.6
Msa0632030 AT3G29035.1 41.406 128 59 4 8 119 22 149 7.70e-21 87.8
Msa0632030 AT3G15170.1 36.601 153 73 5 10 138 20 172 1.00e-20 87.4
Msa0632030 AT5G62380.2 33.962 159 82 7 5 141 2 159 1.04e-20 87.8
Msa0632030 AT5G62380.1 33.962 159 82 7 5 141 2 159 1.04e-20 87.8
Msa0632030 AT3G10480.2 36.774 155 76 7 6 138 23 177 1.22e-20 88.2
Msa0632030 AT3G10480.1 36.538 156 76 7 6 138 23 178 1.69e-20 87.8
Msa0632030 AT1G76420.1 35.583 163 77 7 1 138 12 171 2.50e-20 86.7
Msa0632030 AT5G17260.1 35.256 156 78 6 6 138 2 157 4.17e-20 87.0
Msa0632030 AT3G10490.1 34.194 155 79 7 7 138 24 178 6.10e-20 84.0
Msa0632030 AT3G03200.1 35.065 154 77 6 8 138 4 157 1.34e-19 85.5
Msa0632030 AT2G18060.3 32.515 163 89 6 7 148 6 168 2.20e-19 84.3
Msa0632030 AT2G18060.1 32.515 163 89 6 7 148 6 168 2.20e-19 84.3
Msa0632030 AT4G36160.2 33.529 170 91 7 1 148 5 174 3.12e-19 84.0
Msa0632030 AT4G36160.1 33.529 170 91 7 1 148 1 170 3.32e-19 84.0
Msa0632030 AT4G36160.3 33.529 170 91 7 1 148 1 170 3.32e-19 84.0
Msa0632030 AT3G10490.2 34.194 155 79 7 7 138 24 178 4.18e-19 84.0
Msa0632030 AT1G65910.1 36.601 153 75 6 8 138 4 156 4.24e-19 84.3
Msa0632030 AT1G32770.1 31.707 164 79 6 9 139 15 178 4.74e-19 83.2
Msa0632030 AT2G43000.1 30.769 156 87 5 12 146 20 175 5.01e-19 82.0
Msa0632030 AT1G52880.1 36.250 160 70 6 14 141 21 180 5.05e-19 82.8
Msa0632030 AT5G04410.1 35.185 162 77 7 2 138 1 159 7.77e-19 83.6
Msa0632030 AT3G61910.1 33.133 166 75 7 9 138 10 175 7.92e-19 82.4
Msa0632030 AT1G54330.1 34.868 152 80 6 8 140 4 155 8.73e-19 82.0
Msa0632030 AT1G12260.2 34.839 155 76 7 10 141 7 159 3.34e-18 80.9
Msa0632030 AT1G12260.1 34.839 155 76 7 10 141 7 159 5.62e-18 80.5
Msa0632030 AT1G62700.1 34.839 155 78 7 9 141 6 159 5.70e-18 80.5
Msa0632030 AT1G62700.2 34.839 155 78 7 9 141 6 159 5.70e-18 80.5
Msa0632030 AT3G10500.1 34.545 165 80 7 2 141 1 162 7.59e-18 80.5
Msa0632030 AT4G35580.1 34.161 161 80 7 2 138 1 159 1.00e-17 80.1
Msa0632030 AT4G35580.2 34.161 161 80 7 2 138 1 159 1.17e-17 80.1
Msa0632030 AT4G35580.3 34.161 161 80 7 2 138 1 159 1.19e-17 80.1
Msa0632030 AT4G17980.1 34.969 163 77 7 2 138 1 160 1.22e-17 78.2
Msa0632030 AT5G46590.1 34.783 161 78 7 2 138 1 158 1.28e-17 78.6
Msa0632030 AT4G28530.1 33.333 165 74 6 9 138 9 172 1.37e-17 79.3
Msa0632030 AT4G17980.2 34.969 163 77 7 2 138 1 160 1.43e-17 78.6
Msa0632030 AT1G33060.2 33.987 153 75 7 10 138 24 174 1.57e-17 79.7
Msa0632030 AT1G33060.1 33.987 153 75 7 10 138 24 174 1.68e-17 79.7
Msa0632030 AT5G66300.1 32.704 159 81 7 7 141 9 165 2.55e-17 77.8
Msa0632030 AT3G12910.1 30.114 176 84 9 5 143 17 190 5.53e-17 77.0
Msa0632030 AT1G71930.2 32.258 155 84 6 10 143 9 163 8.08e-17 76.6
Msa0632030 AT1G71930.1 32.258 155 84 6 10 143 9 163 8.08e-17 76.6
Msa0632030 AT2G46770.1 30.460 174 79 7 9 143 15 185 1.35e-16 76.6
Msa0632030 AT5G39820.1 30.814 172 72 7 12 138 22 191 2.73e-16 75.5
Msa0632030 AT5G46590.2 36.232 138 66 6 2 120 1 135 2.87e-16 74.7
Msa0632030 AT1G02230.1 33.103 145 77 5 11 135 4 148 3.18e-16 75.5
Msa0632030 AT2G02450.1 33.557 149 74 6 12 138 53 198 3.36e-16 75.5
Msa0632030 AT2G02450.2 33.557 149 74 6 12 138 53 198 4.05e-16 75.5
Msa0632030 AT1G26870.1 32.500 160 77 6 10 138 16 175 4.83e-16 75.1
Msa0632030 AT2G17040.1 35.065 154 70 7 12 141 8 155 7.97e-16 73.6
Msa0632030 AT5G22290.1 29.221 154 90 5 12 148 23 174 1.10e-15 73.9
Msa0632030 AT1G32510.1 33.962 159 75 7 10 138 6 164 2.64e-15 72.0
Msa0632030 AT5G50820.1 33.333 138 74 4 6 128 13 147 2.26e-14 68.2
Msa0632030 AT1G02250.1 32.877 146 76 5 11 135 4 148 3.42e-14 69.7
Msa0632030 AT5G14000.1 30.058 173 100 6 8 161 13 183 5.61e-14 67.4
Msa0632030 AT3G04420.2 32.432 148 79 6 11 138 4 150 1.11e-13 67.8
Msa0632030 AT3G04420.1 32.414 145 77 6 11 135 4 147 1.20e-13 68.2
Msa0632030 AT1G34190.1 37.097 124 60 5 12 117 18 141 1.29e-13 68.6
Msa0632030 AT3G49530.1 29.762 168 91 7 10 152 13 178 1.81e-13 67.8
Msa0632030 AT4G01520.1 31.818 154 81 6 8 138 2 154 1.81e-13 67.4
Msa0632030 AT3G49530.2 29.762 168 91 7 10 152 13 178 2.73e-13 67.4
Msa0632030 AT1G34180.1 34.921 126 64 5 12 119 18 143 6.32e-12 63.5
Msa0632030 AT1G34180.3 34.921 126 64 5 12 119 18 143 8.01e-12 63.2
Msa0632030 AT1G56010.1 38.043 92 43 4 61 138 13 104 2.31e-11 60.8
Msa0632030 AT5G61430.2 38.202 89 42 3 63 138 15 103 2.66e-11 60.8
Msa0632030 AT2G33480.3 42.353 85 38 4 72 145 26 110 2.74e-11 60.1
Msa0632030 AT2G43000.2 31.522 92 51 3 67 146 6 97 7.87e-11 58.9

Find 45 sgRNAs with CRISPR-Local

Find 283 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAACCTATAAATAAAT+TGG 0.146052 4_3:-15680005 Msa0632030:CDS
TTCATTCCCAATTTATTTAT+AGG 0.164515 4_3:+15679998 None:intergenic
AATGGATATTGGAAGGAAAT+TGG 0.199332 4_3:-15680031 Msa0632030:CDS
AAGCTAATTATTAACTAATT+AGG 0.204594 4_3:+15676635 None:intergenic
GAAAATAGAAGCACTGAAAA+TGG 0.301344 4_3:-15680049 Msa0632030:CDS
ATGGATATTGGAAGGAAATT+GGG 0.330470 4_3:-15680030 Msa0632030:CDS
GTGTGAGACAGGATCATAAT+TGG 0.363529 4_3:-15676805 Msa0632030:intron
GAAGCACTGAAAATGGATAT+TGG 0.365813 4_3:-15680042 Msa0632030:CDS
TGGTGAGACAAGTGAAGTTC+AGG 0.398752 4_3:+15680747 None:intergenic
CATGATCCTTGGGAAATATA+CGG 0.400748 4_3:-15680726 Msa0632030:intron
AGTACCTTGTATTCAACCTT+GGG 0.405124 4_3:-15679973 Msa0632030:CDS
ACTTGTCTCACCATGATCCT+TGG 0.405810 4_3:-15680737 Msa0632030:CDS
CTTGTCTCACCATGATCCTT+GGG 0.421667 4_3:-15680736 Msa0632030:CDS
GGTATGATGCTAGGATGATA+TGG 0.434256 4_3:+15680768 None:intergenic
GATGAGGATATTGATGATAA+TGG 0.434866 4_3:-15676725 Msa0632030:CDS
CTTCCCCAAGGTTGAATACA+AGG 0.441845 4_3:+15679969 None:intergenic
ACAAAACCTATAAATAAATT+GGG 0.452946 4_3:-15680004 Msa0632030:CDS
AGCAGCGTGAAGCTTCCTCC+TGG 0.455992 4_3:-15680855 Msa0632030:CDS
AATTGAAACAAGTTGGGTAA+TGG 0.457936 4_3:-15679945 Msa0632030:CDS
GGGAAGGAATTGAAACAAGT+TGG 0.476317 4_3:-15679952 Msa0632030:CDS
ATGATATGGTAAAGAAGCCT+TGG 0.489756 4_3:+15680782 None:intergenic
CGTATATTTCCCAAGGATCA+TGG 0.491411 4_3:+15680727 None:intergenic
GGAAGGAATTGAAACAAGTT+GGG 0.495348 4_3:-15679951 Msa0632030:CDS
ATATCATATTTCCTCATCTC+CGG 0.517814 4_3:-15679918 Msa0632030:intron
AGGACTAGTTCTTCATCCGT+TGG 0.520052 4_3:+15680819 None:intergenic
AGGATCATAATTGGAGCAGA+TGG 0.520438 4_3:-15676796 Msa0632030:CDS
TAATTATTAACTAATTAGGT+AGG 0.520877 4_3:+15676639 None:intergenic
TGGATATTGGAAGGAAATTG+GGG 0.532640 4_3:-15680029 Msa0632030:CDS
AAGTACCTTGTATTCAACCT+TGG 0.541631 4_3:-15679974 Msa0632030:CDS
CTTGTATTCAACCTTGGGGA+AGG 0.542660 4_3:-15679968 Msa0632030:CDS
GCAGCGTGAAGCTTCCTCCT+GGG 0.544030 4_3:-15680854 Msa0632030:CDS
TGAAGTTCAGGTATGATGCT+AGG 0.561302 4_3:+15680759 None:intergenic
TTGTTTCAATTCCTTCCCCA+AGG 0.571160 4_3:+15679957 None:intergenic
GGATCATAATTGGAGCAGAT+GGG 0.571776 4_3:-15676795 Msa0632030:CDS
CCTTGGAATAGAGAAAATGA+AGG 0.572117 4_3:+15680799 None:intergenic
CACTGAAAATGGATATTGGA+AGG 0.575605 4_3:-15680038 Msa0632030:CDS
GAAAAGAAGATGTCACATCA+AGG 0.579347 4_3:-15676755 Msa0632030:CDS
ACAATCACTTACCGGAGATG+AGG 0.598757 4_3:+15679907 None:intergenic
GACATACCGTATATTTCCCA+AGG 0.621341 4_3:+15680720 None:intergenic
ACAGGTAAAGCATTGTCAAG+TGG 0.622513 4_3:-15680103 Msa0632030:intron
ACATCAAGGTGCAAGCGATG+AGG 0.654589 4_3:-15676741 Msa0632030:CDS
GTACCTTGTATTCAACCTTG+GGG 0.661844 4_3:-15679972 Msa0632030:CDS
ATAATGGAACAGATGTGTCA+TGG 0.669182 4_3:-15676709 Msa0632030:CDS
GTTGGATCAAAGTAAAACCC+AGG 0.688035 4_3:+15680837 None:intergenic
GGATCAAAGTAAAACCCAGG+AGG 0.734981 4_3:+15680840 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTTAAAATAAAAAT+AGG + chr4_3:15679777-15679796 None:intergenic 0.0%
!! TAAATTGGTATTATATATAT+AGG + chr4_3:15676924-15676943 None:intergenic 10.0%
!!! TTTTCTTTTAAAATAGAATA+TGG - chr4_3:15677155-15677174 Msa0632030:intron 10.0%
!!! ATTTATTTTATTTTTTTACC+CGG + chr4_3:15677262-15677281 None:intergenic 10.0%
!!! ATTATTCTAAGTTTTTTTTT+AGG - chr4_3:15677763-15677782 Msa0632030:intron 10.0%
!!! TTATTCTAAGTTTTTTTTTA+GGG - chr4_3:15677764-15677783 Msa0632030:intron 10.0%
!! ATAATTTAAAAATTGATTAG+GGG + chr4_3:15677814-15677833 None:intergenic 10.0%
!! ATAGCTAAAAATATAAAAAT+TGG + chr4_3:15677875-15677894 None:intergenic 10.0%
!! AAAAAGGTAATAAAATTAAA+TGG + chr4_3:15678269-15678288 None:intergenic 10.0%
!! AAATGAGATAAAAAATATTT+GGG + chr4_3:15678397-15678416 None:intergenic 10.0%
!! GAAAATAGTTAAAAAAAAAT+TGG + chr4_3:15678542-15678561 None:intergenic 10.0%
!!! AGAGATTTTTTATTTTTTAA+CGG - chr4_3:15678798-15678817 Msa0632030:intron 10.0%
!! AATTTACTTAATTTATTATC+GGG + chr4_3:15679661-15679680 None:intergenic 10.0%
!! TATTTGACAAAATATTATAT+TGG + chr4_3:15680568-15680587 None:intergenic 10.0%
!! TATAATTAATCTATAAGTGA+TGG + chr4_3:15677218-15677237 None:intergenic 15.0%
!!! TCAAATTTTTATCTAAAATC+CGG - chr4_3:15677240-15677259 Msa0632030:intron 15.0%
!! ACAAAACCTATAAATAAATT+GGG - chr4_3:15677497-15677516 Msa0632030:intron 15.0%
!! TCATATTAGTTATTATAGAT+TGG + chr4_3:15677685-15677704 None:intergenic 15.0%
!! TACTTAATTGATATTGTATT+CGG + chr4_3:15678012-15678031 None:intergenic 15.0%
!!! TTTTATTACCTTTTTTTCAA+AGG - chr4_3:15678274-15678293 Msa0632030:intron 15.0%
!!! ATAAAATTCCTTTGAAAAAA+AGG + chr4_3:15678285-15678304 None:intergenic 15.0%
!! GAAATGAGATAAAAAATATT+TGG + chr4_3:15678398-15678417 None:intergenic 15.0%
!!! TAATTTATTCATTTTTCCTT+CGG - chr4_3:15679052-15679071 Msa0632030:intron 15.0%
!! ATAAAAATAGGTTATTATTG+AGG + chr4_3:15679765-15679784 None:intergenic 15.0%
!! AACACAAAATGATATAAATT+AGG - chr4_3:15680187-15680206 Msa0632030:intron 15.0%
!! ACAAAATTAAATCTTCAAAA+TGG + chr4_3:15680472-15680491 None:intergenic 15.0%
!! TAATTATTAACTAATTAGGT+AGG + chr4_3:15680865-15680884 None:intergenic 15.0%
!! AAGCTAATTATTAACTAATT+AGG + chr4_3:15680869-15680888 None:intergenic 15.0%
!! AGTGTTAAGACAAAATAAAT+TGG + chr4_3:15676939-15676958 None:intergenic 20.0%
!! ATTCTAAATACCATCTAAAT+TGG - chr4_3:15677035-15677054 Msa0632030:intron 20.0%
!! TTCTAAATACCATCTAAATT+GGG - chr4_3:15677036-15677055 Msa0632030:intron 20.0%
!! ATTAGCAATAACATATGTTA+AGG + chr4_3:15677081-15677100 None:intergenic 20.0%
!!! CATAGCATATAATTGAATTT+TGG + chr4_3:15677130-15677149 None:intergenic 20.0%
!!! CAAATTTTTATCTAAAATCC+GGG - chr4_3:15677241-15677260 Msa0632030:intron 20.0%
!!! GATAGGTTTTACATAAATTT+TGG + chr4_3:15677308-15677327 None:intergenic 20.0%
!! CACAAAACCTATAAATAAAT+TGG - chr4_3:15677496-15677515 Msa0632030:intron 20.0%
!! TTCATTCCCAATTTATTTAT+AGG + chr4_3:15677506-15677525 None:intergenic 20.0%
!!! ATTTGTTGTGATTTATGAAT+AGG + chr4_3:15677638-15677657 None:intergenic 20.0%
!!! TAGAGAAGTTTTAAAAAAGT+CGG + chr4_3:15677968-15677987 None:intergenic 20.0%
!!! TTTGAAAGCATAAAATTGAA+TGG - chr4_3:15678053-15678072 Msa0632030:intron 20.0%
!! TCCTTAAAAAATTAATGGAA+CGG + chr4_3:15678242-15678261 None:intergenic 20.0%
!!! ATAATTTTTTTAGTGTTGCT+TGG - chr4_3:15678501-15678520 Msa0632030:intron 20.0%
!! TAGTTAAAAAAAAATTGGTG+AGG + chr4_3:15678537-15678556 None:intergenic 20.0%
!!! ACTATTTAAAACTAAGTTGA+TGG - chr4_3:15678614-15678633 Msa0632030:intron 20.0%
!!! ATTTTGTGTCATGTAAATAT+TGG - chr4_3:15678885-15678904 Msa0632030:intron 20.0%
!!! TATTGGTATTAATCCATTTT+TGG - chr4_3:15678902-15678921 Msa0632030:intron 20.0%
!! TTTATATACGTTGAATTGAA+AGG - chr4_3:15679293-15679312 Msa0632030:intron 20.0%
!! CATATCTTATTACTTAAAGT+TGG - chr4_3:15679701-15679720 Msa0632030:intron 20.0%
!!! ATGATTTATGAAATTTTGAG+TGG - chr4_3:15679889-15679908 Msa0632030:intron 20.0%
!!! TGTTTAAAAGTTGAAGTTTT+TGG - chr4_3:15679924-15679943 Msa0632030:CDS 20.0%
!! TAAATAAATTCAAAACTCCA+TGG - chr4_3:15679980-15679999 Msa0632030:CDS 20.0%
!! AAATAAATTCAAAACTCCAT+GGG - chr4_3:15679981-15680000 Msa0632030:CDS 20.0%
!! AAGTCAAAATGATATAAATC+AGG - chr4_3:15680337-15680356 Msa0632030:intron 20.0%
!! AGATAGATATCAATTATTAC+TGG - chr4_3:15680392-15680411 Msa0632030:intron 20.0%
!! GTACTCTAAATATTGTATTA+TGG - chr4_3:15680508-15680527 Msa0632030:intron 20.0%
!! TGACAAAATATTATATTGGA+AGG + chr4_3:15680564-15680583 None:intergenic 20.0%
! TCTATATATGCATGCATATA+TGG + chr4_3:15676889-15676908 None:intergenic 25.0%
!! ATTAATCTATAAGTGATGGA+TGG + chr4_3:15677214-15677233 None:intergenic 25.0%
!!! AGAGAAGTTTTAAAAAAGTC+GGG + chr4_3:15677967-15677986 None:intergenic 25.0%
!! AAAACTTCTCTACACTTTTA+AGG - chr4_3:15677976-15677995 Msa0632030:intron 25.0%
!!! ACCGTTCCATTAATTTTTTA+AGG - chr4_3:15678238-15678257 Msa0632030:intron 25.0%
!!! GTTCCATTAATTTTTTAAGG+AGG - chr4_3:15678241-15678260 Msa0632030:intron 25.0%
! GAACCTCCTTAAAAAATTAA+TGG + chr4_3:15678247-15678266 None:intergenic 25.0%
! TGTAAAAAAAATTGTTCCGA+AGG + chr4_3:15679071-15679090 None:intergenic 25.0%
! ATTCTCAAATTTACGAAGAA+TGG - chr4_3:15679143-15679162 Msa0632030:intron 25.0%
! ATGATATAAATCAAGTAGAG+AGG - chr4_3:15679320-15679339 Msa0632030:intron 25.0%
! TTTGACTACCCATTATTATA+TGG - chr4_3:15679590-15679609 Msa0632030:intron 25.0%
! CTTAATTTATTATCGGGTAT+GGG + chr4_3:15679655-15679674 None:intergenic 25.0%
! ACTTAATTTATTATCGGGTA+TGG + chr4_3:15679656-15679675 None:intergenic 25.0%
!! CGGTAAAATTTTCTTCAATA+AGG + chr4_3:15679729-15679748 None:intergenic 25.0%
!!! ATTATTGAGGATTTTTAGGT+GGG + chr4_3:15679752-15679771 None:intergenic 25.0%
!!! TATTATTGAGGATTTTTAGG+TGG + chr4_3:15679753-15679772 None:intergenic 25.0%
!! GGTTATTATTGAGGATTTTT+AGG + chr4_3:15679756-15679775 None:intergenic 25.0%
!!! AATTTTGAGTGGATTATGTA+TGG - chr4_3:15679900-15679919 Msa0632030:intron 25.0%
! ATGATATAAATTAGGTAGAG+AGG - chr4_3:15680195-15680214 Msa0632030:intron 25.0%
! ATGAAAACATATTTAGTCAG+CGG + chr4_3:15680431-15680450 None:intergenic 25.0%
ATTGATCAAGTGACATATAC+TGG - chr4_3:15676851-15676870 Msa0632030:intron 30.0%
!!! CTTACTTTCTAGCTGAATTT+TGG + chr4_3:15676992-15677011 None:intergenic 30.0%
ATTCAATGATCGATTAATCC+CGG - chr4_3:15677178-15677197 Msa0632030:intron 30.0%
!! AAGAGTACGATTTTTCAGAT+AGG + chr4_3:15677325-15677344 None:intergenic 30.0%
AATCGTACTCTTTATAGTTG+TGG - chr4_3:15677333-15677352 Msa0632030:intron 30.0%
! AAAGGCATGTATATTTCTTG+GGG + chr4_3:15677374-15677393 None:intergenic 30.0%
! CAAAGGCATGTATATTTCTT+GGG + chr4_3:15677375-15677394 None:intergenic 30.0%
! ACAAAGGCATGTATATTTCT+TGG + chr4_3:15677376-15677395 None:intergenic 30.0%
ATATACATGCCTTTGTAAAC+AGG - chr4_3:15677380-15677399 Msa0632030:intron 30.0%
AATGCTTTACCTGTTTACAA+AGG + chr4_3:15677392-15677411 None:intergenic 30.0%
!! GAAAATAGAAGCACTGAAAA+TGG - chr4_3:15677452-15677471 Msa0632030:intron 30.0%
AATGGATATTGGAAGGAAAT+TGG - chr4_3:15677470-15677489 Msa0632030:intron 30.0%
ATGGATATTGGAAGGAAATT+GGG - chr4_3:15677471-15677490 Msa0632030:intron 30.0%
! AATTGAAACAAGTTGGGTAA+TGG - chr4_3:15677556-15677575 Msa0632030:intron 30.0%
ATATCATATTTCCTCATCTC+CGG - chr4_3:15677583-15677602 Msa0632030:intron 30.0%
AACAAAACACAATCACTTAC+CGG + chr4_3:15677605-15677624 None:intergenic 30.0%
!!! TCTAAGTTTTTTTTTAGGGC+TGG - chr4_3:15677768-15677787 Msa0632030:intron 30.0%
AAATTGATTAGGGGCAAAAA+TGG + chr4_3:15677805-15677824 None:intergenic 30.0%
ATGTAGAAGCAACTGAATTT+GGG + chr4_3:15677913-15677932 None:intergenic 30.0%
AATGTAGAAGCAACTGAATT+TGG + chr4_3:15677914-15677933 None:intergenic 30.0%
!! TACACTTTTAAGGAGAAGTT+AGG - chr4_3:15677986-15678005 Msa0632030:intron 30.0%
!! AAAACTAAGTTGATGGTTCA+TGG - chr4_3:15678621-15678640 Msa0632030:intron 30.0%
!! TTGATGGTTCATGGTTTTTA+AGG - chr4_3:15678630-15678649 Msa0632030:intron 30.0%
AAGGATAGATGGTAAAATGA+CGG + chr4_3:15678692-15678711 None:intergenic 30.0%
GATTACATTGAAAGGATAGA+TGG + chr4_3:15678703-15678722 None:intergenic 30.0%
ATGCTTAGTAATATTCACTC+TGG + chr4_3:15678728-15678747 None:intergenic 30.0%
ATTACTAAGCATATGTGAAG+AGG - chr4_3:15678736-15678755 Msa0632030:intron 30.0%
TGTCATAGAGTTACCAAAAA+TGG + chr4_3:15678918-15678937 None:intergenic 30.0%
TCCAAATATTTGTGATGCAT+GGG + chr4_3:15679110-15679129 None:intergenic 30.0%
ATCCAAATATTTGTGATGCA+TGG + chr4_3:15679111-15679130 None:intergenic 30.0%
CTTCGTAAATTTGAGAATGA+AGG + chr4_3:15679141-15679160 None:intergenic 30.0%
AAGGAGAGATGTTCAAATTA+CGG + chr4_3:15679176-15679195 None:intergenic 30.0%
GTACCTATAATTCACATGAA+AGG - chr4_3:15679215-15679234 Msa0632030:intron 30.0%
AGTCCTTTCATGTGAATTAT+AGG + chr4_3:15679221-15679240 None:intergenic 30.0%
TTTCACATGATCTACAACAA+AGG + chr4_3:15679270-15679289 None:intergenic 30.0%
! TTTGTTGTAGATCATGTGAA+GGG - chr4_3:15679269-15679288 Msa0632030:intron 30.0%
ATACTCATTTATTATACCCG+TGG + chr4_3:15679571-15679590 None:intergenic 30.0%
GTCTGTGTCCATATAATAAT+GGG + chr4_3:15679601-15679620 None:intergenic 30.0%
TGTCTGTGTCCATATAATAA+TGG + chr4_3:15679602-15679621 None:intergenic 30.0%
TTATTATATGGACACAGACA+CGG - chr4_3:15679602-15679621 Msa0632030:intron 30.0%
! GTTTTATGATGTGAATGAAG+TGG + chr4_3:15679827-15679846 None:intergenic 30.0%
TATCATATTATCCGTATCCA+TGG - chr4_3:15680107-15680126 Msa0632030:intron 30.0%
ATCATATTATCCGTATCCAT+GGG - chr4_3:15680108-15680127 Msa0632030:intron 30.0%
ATTTAGTATCCAGTTCTTTC+AGG + chr4_3:15680256-15680275 None:intergenic 30.0%
TTTCACATGATCTACAACAA+AGG + chr4_3:15679270-15679289 None:intergenic 30.0%
TGATATAAATCAGGTAGCTT+TGG - chr4_3:15680346-15680365 Msa0632030:intron 30.0%
!! TTTGGTAATAGGGTTTTCAT+TGG - chr4_3:15680364-15680383 Msa0632030:intron 30.0%
! TTTAGAGTACTCTTGCATTA+CGG + chr4_3:15680498-15680517 None:intergenic 30.0%
!! TATTTTTGATTGTGTGAGAC+AGG - chr4_3:15680685-15680704 Msa0632030:intron 30.0%
! GATGAGGATATTGATGATAA+TGG - chr4_3:15680776-15680795 Msa0632030:CDS 30.0%
! TGGGTTTTACTTTGATCCAA+CGG - chr4_3:15676666-15676685 Msa0632030:CDS 35.0%
CCTTGGAATAGAGAAAATGA+AGG + chr4_3:15676705-15676724 None:intergenic 35.0%
! CCTTCATTTTCTCTATTCCA+AGG - chr4_3:15676702-15676721 Msa0632030:CDS 35.0%
ATGATATGGTAAAGAAGCCT+TGG + chr4_3:15676722-15676741 None:intergenic 35.0%
CATGATCCTTGGGAAATATA+CGG - chr4_3:15676775-15676794 Msa0632030:CDS 35.0%
ACGGTATGTCTTATAGTACT+AGG - chr4_3:15676794-15676813 Msa0632030:CDS 35.0%
!! TGAGAGTATCCCAATTTAGA+TGG + chr4_3:15677048-15677067 None:intergenic 35.0%
! GCTTCTATTTTCCTTCACTT+CGG + chr4_3:15677444-15677463 None:intergenic 35.0%
!! GAAGCACTGAAAATGGATAT+TGG - chr4_3:15677459-15677478 Msa0632030:intron 35.0%
CACTGAAAATGGATATTGGA+AGG - chr4_3:15677463-15677482 Msa0632030:intron 35.0%
TGGATATTGGAAGGAAATTG+GGG - chr4_3:15677472-15677491 Msa0632030:intron 35.0%
AAGTACCTTGTATTCAACCT+TGG - chr4_3:15677527-15677546 Msa0632030:intron 35.0%
AGTACCTTGTATTCAACCTT+GGG - chr4_3:15677528-15677547 Msa0632030:intron 35.0%
GGAAGGAATTGAAACAAGTT+GGG - chr4_3:15677550-15677569 Msa0632030:intron 35.0%
TAGTAACATTCAACAGCTTC+TGG + chr4_3:15678091-15678110 None:intergenic 35.0%
AATGTGTGTATATATTCGCG+AGG + chr4_3:15678426-15678445 None:intergenic 35.0%
GCGTAACAAAAAAAGACAGA+CGG + chr4_3:15678473-15678492 None:intergenic 35.0%
! CTCTGGAAGATTACATTGAA+AGG + chr4_3:15678711-15678730 None:intergenic 35.0%
CCAAATATTTGTGATGCATG+GGG + chr4_3:15679109-15679128 None:intergenic 35.0%
ATTTAGTATCCAGTCCTTTC+AGG + chr4_3:15679381-15679400 None:intergenic 35.0%
CTTCACATGATCTACAACAA+AGG + chr4_3:15679419-15679438 None:intergenic 35.0%
! CTTTGTTGTAGATCATGTGA+AGG - chr4_3:15679268-15679287 Msa0632030:intron 35.0%
TGTGAAGGGATTTATATACG+TGG - chr4_3:15679432-15679451 Msa0632030:intron 35.0%
AGTTAATATCTGCCTTTGCT+AGG - chr4_3:15679466-15679485 Msa0632030:intron 35.0%
GTTAATATCTGCCTTTGCTA+GGG - chr4_3:15679467-15679486 Msa0632030:intron 35.0%
TTAATATCTGCCTTTGCTAG+GGG - chr4_3:15679468-15679487 Msa0632030:intron 35.0%
TGATGTGAATGAAGTGGAAA+CGG + chr4_3:15679821-15679840 None:intergenic 35.0%
TGGGTATCATATTTATCCGA+CGG - chr4_3:15680072-15680091 Msa0632030:CDS 35.0%
TGATCTACAGCAAATGTCAA+TGG + chr4_3:15680137-15680156 None:intergenic 35.0%
!! AATCAGGTAGCTTTGGTAAT+AGG - chr4_3:15680353-15680372 Msa0632030:intron 35.0%
!! ATCAGGTAGCTTTGGTAATA+GGG - chr4_3:15680354-15680373 Msa0632030:intron 35.0%
GGGTTTGTAACTAGTTAATG+TGG - chr4_3:15680614-15680633 Msa0632030:intron 35.0%
GAAAAGAAGATGTCACATCA+AGG - chr4_3:15680746-15680765 Msa0632030:CDS 35.0%
! ATAATGGAACAGATGTGTCA+TGG - chr4_3:15680792-15680811 Msa0632030:CDS 35.0%
GTTGGATCAAAGTAAAACCC+AGG + chr4_3:15676667-15676686 None:intergenic 40.0%
GGTATGATGCTAGGATGATA+TGG + chr4_3:15676736-15676755 None:intergenic 40.0%
TGAAGTTCAGGTATGATGCT+AGG + chr4_3:15676745-15676764 None:intergenic 40.0%
CGTATATTTCCCAAGGATCA+TGG + chr4_3:15676777-15676796 None:intergenic 40.0%
GACATACCGTATATTTCCCA+AGG + chr4_3:15676784-15676803 None:intergenic 40.0%
!! TAAGTGATGGATGGTGAGAT+TGG + chr4_3:15677205-15677224 None:intergenic 40.0%
!! ACAGGTAAAGCATTGTCAAG+TGG - chr4_3:15677398-15677417 Msa0632030:intron 40.0%
!!! CTACTTTTTCACCGAAGTGA+AGG - chr4_3:15677430-15677449 Msa0632030:intron 40.0%
GTACCTTGTATTCAACCTTG+GGG - chr4_3:15677529-15677548 Msa0632030:intron 40.0%
TTGTTTCAATTCCTTCCCCA+AGG + chr4_3:15677547-15677566 None:intergenic 40.0%
GGGAAGGAATTGAAACAAGT+TGG - chr4_3:15677549-15677568 Msa0632030:intron 40.0%
GGGCAAAATGGTAAATTCGA+TGG + chr4_3:15677718-15677737 None:intergenic 40.0%
! GAATTTACCATTTTGCCCCT+AGG - chr4_3:15677720-15677739 Msa0632030:intron 40.0%
TAGAAGCAACTGAATTTGGG+AGG + chr4_3:15677910-15677929 None:intergenic 40.0%
GATTCCTTAATCTCCCACAA+CGG + chr4_3:15677938-15677957 None:intergenic 40.0%
AACTCTTTAGCGTCTTGTGT+AGG + chr4_3:15678846-15678865 None:intergenic 40.0%
CCCCATGCATCACAAATATT+TGG - chr4_3:15679106-15679125 Msa0632030:intron 40.0%
! CAGAAGTTTGTTCACCTGAA+AGG - chr4_3:15679364-15679383 Msa0632030:intron 40.0%
TTGGATTGTATCCATACCCA+CGG - chr4_3:15679626-15679645 Msa0632030:intron 40.0%
!!! ATTGAGGATTTTTAGGTGGG+CGG + chr4_3:15679749-15679768 None:intergenic 40.0%
GGGTATCATATTTATCCGAC+GGG - chr4_3:15680073-15680092 Msa0632030:CDS 40.0%
GGTATCATATTTATCCGACG+GGG - chr4_3:15680074-15680093 Msa0632030:CDS 40.0%
TCAATGGATACCCATGGATA+CGG + chr4_3:15680121-15680140 None:intergenic 40.0%
CAAATGTCAATGGATACCCA+TGG + chr4_3:15680127-15680146 None:intergenic 40.0%
GTTTGTTCACCTGAAAGAAC+TGG - chr4_3:15680244-15680263 Msa0632030:intron 40.0%
GTGTGAGACAGGATCATAAT+TGG - chr4_3:15680696-15680715 Msa0632030:intron 40.0%
AGGATCATAATTGGAGCAGA+TGG - chr4_3:15680705-15680724 Msa0632030:intron 40.0%
GGATCATAATTGGAGCAGAT+GGG - chr4_3:15680706-15680725 Msa0632030:intron 40.0%
GGATCAAAGTAAAACCCAGG+AGG + chr4_3:15676664-15676683 None:intergenic 45.0%
!! AGGACTAGTTCTTCATCCGT+TGG + chr4_3:15676685-15676704 None:intergenic 45.0%
TGGTGAGACAAGTGAAGTTC+AGG + chr4_3:15676757-15676776 None:intergenic 45.0%
ACTTGTCTCACCATGATCCT+TGG - chr4_3:15676764-15676783 Msa0632030:CDS 45.0%
CTTGTCTCACCATGATCCTT+GGG - chr4_3:15676765-15676784 Msa0632030:CDS 45.0%
CTTCCCCAAGGTTGAATACA+AGG + chr4_3:15677535-15677554 None:intergenic 45.0%
CTTGTATTCAACCTTGGGGA+AGG - chr4_3:15677533-15677552 Msa0632030:intron 45.0%
ACAATCACTTACCGGAGATG+AGG + chr4_3:15677597-15677616 None:intergenic 45.0%
! TTTACCATTTTGCCCCTAGG+AGG - chr4_3:15677723-15677742 Msa0632030:intron 45.0%
! TTACCATTTTGCCCCTAGGA+GGG - chr4_3:15677724-15677743 Msa0632030:intron 45.0%
TTACCAAAATGCCCCTCCTA+GGG + chr4_3:15677739-15677758 None:intergenic 45.0%
TTTACCAAAATGCCCCTCCT+AGG + chr4_3:15677740-15677759 None:intergenic 45.0%
TTGCTTCTACATTGCCGTTG+TGG - chr4_3:15677921-15677940 Msa0632030:intron 45.0%
TGCTTCTACATTGCCGTTGT+GGG - chr4_3:15677922-15677941 Msa0632030:intron 45.0%
ATTGCCGTTGTGGGAGATTA+AGG - chr4_3:15677931-15677950 Msa0632030:intron 45.0%
! ACCTCTTTTCAACTCACGCT+GGG - chr4_3:15678144-15678163 Msa0632030:intron 45.0%
GTTTGTTCACCTGAAAGGAC+TGG - chr4_3:15679369-15679388 Msa0632030:intron 45.0%
! ATTTTTGCCACCCCTAGCAA+AGG + chr4_3:15679481-15679500 None:intergenic 45.0%
GCAAAAATACCCATGCCCAT+GGG - chr4_3:15679493-15679512 Msa0632030:intron 45.0%
ATATGGACACAGACACGGAT+TGG - chr4_3:15679607-15679626 Msa0632030:intron 45.0%
TGGATTGTATCCATACCCAC+GGG - chr4_3:15679627-15679646 Msa0632030:intron 45.0%
!! GTGGGTATTGAGGTATCCAT+GGG + chr4_3:15680009-15680028 None:intergenic 45.0%
CATGGATACCTCAATACCCA+CGG - chr4_3:15680008-15680027 Msa0632030:CDS 45.0%
ATGGATACCTCAATACCCAC+GGG - chr4_3:15680009-15680028 Msa0632030:CDS 45.0%
ATCATATTTATCCGACGGGG+CGG - chr4_3:15680077-15680096 Msa0632030:CDS 45.0%
!! AATAATTTAAAAATTGATTA+GGG + chr4_3:15677815-15677834 None:intergenic 5.0%
!! AAATAATTTAAAAATTGATT+AGG + chr4_3:15677816-15677835 None:intergenic 5.0%
!! AATATTAAAAAATAAAGAAA+AGG + chr4_3:15678172-15678191 None:intergenic 5.0%
!! TTAAAAAAAATAAAGTTAAA+TGG + chr4_3:15678219-15678238 None:intergenic 5.0%
!!! GTTTTTAAAAATATAAAAAT+TGG + chr4_3:15678564-15678583 None:intergenic 5.0%
!!! TTTTAAAAAACTTATTTTAA+AGG + chr4_3:15679195-15679214 None:intergenic 5.0%
!! TAATTTACTTAATTTATTAT+CGG + chr4_3:15679662-15679681 None:intergenic 5.0%
!!! TTTTGAATTTATTTATTTTT+TGG + chr4_3:15679975-15679994 None:intergenic 5.0%
! ATGGATGGTGAGATTGGTCC+GGG + chr4_3:15677199-15677218 None:intergenic 50.0%
! GATGGATGGTGAGATTGGTC+CGG + chr4_3:15677200-15677219 None:intergenic 50.0%
! TACCATTTTGCCCCTAGGAG+GGG - chr4_3:15677725-15677744 Msa0632030:intron 50.0%
TACCAAAATGCCCCTCCTAG+GGG + chr4_3:15677738-15677757 None:intergenic 50.0%
! CACCTCTTTTCAACTCACGC+TGG - chr4_3:15678143-15678162 Msa0632030:intron 50.0%
! TCCCAGCGTGAGTTGAAAAG+AGG + chr4_3:15678148-15678167 None:intergenic 50.0%
ATATCTGCCTTTGCTAGGGG+TGG - chr4_3:15679471-15679490 Msa0632030:intron 50.0%
GGCAAAAATACCCATGCCCA+TGG - chr4_3:15679492-15679511 Msa0632030:intron 50.0%
! TTTTACCCACGGGTACCCAT+GGG + chr4_3:15679511-15679530 None:intergenic 50.0%
! ATTTTACCCACGGGTACCCA+TGG + chr4_3:15679512-15679531 None:intergenic 50.0%
GGTAAAATCCGTCACGGGTA+TGG - chr4_3:15679524-15679543 Msa0632030:intron 50.0%
GTATGGAGCGGGTAGCTAAA+CGG - chr4_3:15679541-15679560 Msa0632030:intron 50.0%
TATGGAGCGGGTAGCTAAAC+GGG - chr4_3:15679542-15679561 Msa0632030:intron 50.0%
GGTAGCTAAACGGGTATCCA+CGG - chr4_3:15679551-15679570 Msa0632030:intron 50.0%
GTAGCTAAACGGGTATCCAC+GGG - chr4_3:15679552-15679571 Msa0632030:intron 50.0%
CAAAACTCCATGGGTACCCA+TGG - chr4_3:15679990-15680009 Msa0632030:CDS 50.0%
!! CGTGGGTATTGAGGTATCCA+TGG + chr4_3:15680010-15680029 None:intergenic 50.0%
TCATATTTATCCGACGGGGC+GGG - chr4_3:15680078-15680097 Msa0632030:CDS 50.0%
TTACAAACCCGTGCTTCGCA+CGG + chr4_3:15680604-15680623 None:intergenic 50.0%
ACATCAAGGTGCAAGCGATG+AGG - chr4_3:15680760-15680779 Msa0632030:CDS 50.0%
!!! CCGTGACGGATTTTACCCAC+GGG + chr4_3:15679521-15679540 None:intergenic 55.0%
CCCGTGGGTAAAATCCGTCA+CGG - chr4_3:15679518-15679537 Msa0632030:intron 55.0%
!!! CCCGTGACGGATTTTACCCA+CGG + chr4_3:15679522-15679541 None:intergenic 55.0%
CCGTGGGTAAAATCCGTCAC+GGG - chr4_3:15679519-15679538 Msa0632030:intron 55.0%
AATCCGTCACGGGTATGGAG+CGG - chr4_3:15679529-15679548 Msa0632030:intron 55.0%
TATCGGGTATGGGTACCCGT+GGG + chr4_3:15679645-15679664 None:intergenic 55.0%
TTATCGGGTATGGGTACCCG+TGG + chr4_3:15679646-15679665 None:intergenic 55.0%
! GAGGTATCCATGGGTACCCA+TGG + chr4_3:15680000-15680019 None:intergenic 55.0%
! ACTGGTACCCGTGGGTATTG+AGG + chr4_3:15680019-15680038 None:intergenic 55.0%
ACCCACGGGTACCAGTATAG+TGG - chr4_3:15680023-15680042 Msa0632030:CDS 55.0%
CCCACTATACTGGTACCCGT+GGG + chr4_3:15680027-15680046 None:intergenic 55.0%
CCCACGGGTACCAGTATAGT+GGG - chr4_3:15680024-15680043 Msa0632030:CDS 55.0%
ACCCACTATACTGGTACCCG+TGG + chr4_3:15680028-15680047 None:intergenic 55.0%
CTCGTGGGTACCCACTATAC+TGG + chr4_3:15680037-15680056 None:intergenic 55.0%
!! CAGTATAGTGGGTACCCACG+AGG - chr4_3:15680035-15680054 Msa0632030:CDS 55.0%
AGTGGGTACCCACGAGGATA+CGG - chr4_3:15680041-15680060 Msa0632030:CDS 55.0%
CATATTTATCCGACGGGGCG+GGG - chr4_3:15680079-15680098 Msa0632030:CDS 55.0%
TACAAACCCGTGCTTCGCAC+GGG + chr4_3:15680603-15680622 None:intergenic 55.0%
AGCAGCGTGAAGCTTCCTCC+TGG - chr4_3:15676646-15676665 Msa0632030:exon 60.0%
GCAGCGTGAAGCTTCCTCCT+GGG - chr4_3:15676647-15676666 Msa0632030:exon 60.0%
TGCCCCTCCTAGGGGCAAAA+TGG + chr4_3:15677730-15677749 None:intergenic 60.0%
!!! TGCCCCTAGGAGGGGCATTT+TGG - chr4_3:15677733-15677752 Msa0632030:intron 60.0%
ATCCGTCACGGGTATGGAGC+GGG - chr4_3:15679530-15679549 Msa0632030:intron 60.0%
TACCCGCTCCATACCCGTGA+CGG + chr4_3:15679535-15679554 None:intergenic 60.0%
GGTATGGGTACCCGTGGGTA+TGG + chr4_3:15679640-15679659 None:intergenic 60.0%
GTGGGTACCCACGAGGATAC+GGG - chr4_3:15680042-15680061 Msa0632030:CDS 60.0%
TGGGTACCCACGAGGATACG+GGG - chr4_3:15680043-15680062 Msa0632030:CDS 60.0%
ACAAACCCGTGCTTCGCACG+GGG + chr4_3:15680602-15680621 None:intergenic 60.0%
CCACGGGTACCCATGGGCAT+GGG + chr4_3:15679505-15679524 None:intergenic 65.0%
CCATGCCCATGGGTACCCGT+GGG - chr4_3:15679503-15679522 Msa0632030:intron 65.0%
GTACCCACGAGGATACGGGG+CGG - chr4_3:15680046-15680065 Msa0632030:CDS 65.0%
TACCCACGAGGATACGGGGC+GGG - chr4_3:15680047-15680066 Msa0632030:CDS 65.0%
GATACATGTCCCCGCCCCGT+CGG + chr4_3:15680091-15680110 None:intergenic 65.0%
CTGAACCCCCGTGCGAAGCA+CGG - chr4_3:15680593-15680612 Msa0632030:intron 65.0%
TGAACCCCCGTGCGAAGCAC+GGG - chr4_3:15680594-15680613 Msa0632030:intron 65.0%
CAAACCCGTGCTTCGCACGG+GGG + chr4_3:15680601-15680620 None:intergenic 65.0%
CCCATGCCCATGGGTACCCG+TGG - chr4_3:15679502-15679521 Msa0632030:intron 70.0%
CCCACGGGTACCCATGGGCA+TGG + chr4_3:15679506-15679525 None:intergenic 70.0%
TGCCCGCCCCGTATCCTCGT+GGG + chr4_3:15680052-15680071 None:intergenic 70.0%
ATGCCCGCCCCGTATCCTCG+TGG + chr4_3:15680053-15680072 None:intergenic 70.0%
ACGAGGATACGGGGCGGGCA+TGG - chr4_3:15680052-15680071 Msa0632030:CDS 70.0%
CGAGGATACGGGGCGGGCAT+GGG - chr4_3:15680053-15680072 Msa0632030:CDS 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 15676631 15680892 15676631 ID=Msa0632030;Name=Msa0632030
chr4_3 mRNA 15676631 15680892 15676631 ID=Msa0632030-mRNA-1;Parent=Msa0632030;Name=Msa0632030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|1|1|3|18|178
chr4_3 exon 15676631 15676816 15676631 ID=Msa0632030-mRNA-1:exon:4436;Parent=Msa0632030-mRNA-1
chr4_3 exon 15679919 15680121 15679919 ID=Msa0632030-mRNA-1:exon:4435;Parent=Msa0632030-mRNA-1
chr4_3 exon 15680727 15680892 15680727 ID=Msa0632030-mRNA-1:exon:4434;Parent=Msa0632030-mRNA-1
chr4_3 CDS 15680727 15680892 15680727 ID=Msa0632030-mRNA-1:cds;Parent=Msa0632030-mRNA-1
chr4_3 CDS 15679919 15680121 15679919 ID=Msa0632030-mRNA-1:cds;Parent=Msa0632030-mRNA-1
chr4_3 CDS 15676649 15676816 15676649 ID=Msa0632030-mRNA-1:cds;Parent=Msa0632030-mRNA-1
chr4_3 three_prime_UTR 15676631 15676648 15676631 ID=Msa0632030-mRNA-1:three_prime_utr;Parent=Msa0632030-mRNA-1
Gene Sequence

>Msa0632030

ATGATGGGGAGTGAAAGCAGCGTGAAGCTTCCTCCTGGGTTTTACTTTGATCCAACGGATGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAGCATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTAAAGCATTGTCAAGTGGAAATGATCACTACTTTTTCACCGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAAATTGGGAATGAAGAAGTACCTTGTATTCAACCTTGGGGAAGGAATTGAAACAAGTTGGGTAATGGAAGAATATCATATTTCCTCATCTCCGGATCATAATTGGAGCAGATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACATCAAGGTGCAAGCGATGAGGATATTGATGATAATGGAACAGATGTGTCATGGCTAGATGAAGTGTTTATGTCTTTAGATGATGATCTTGATCAAACAAGCCTACCTAATTAG
Protein sequence

>Msa0632030

MMGSESSVKLPPGFYFDPTDEELVLHFLYSKASLPYHPSIIPELHLSHHDPWEIYGKALSSGNDHYFFTEVKENRSTENGYWKEIGVTKPINKLGMKKYLVFNLGEGIETSWVMEEYHISSSPDHNWSRWVLCKVYEKKMSHQGASDEDIDDNGTDVSWLDEVFMSLDDDLDQTSLPN*