AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369210 MtrunA17_Chr8g0384351 91.892 185 8 3 1 178 1 185 1.32e-119 335
Msa1369210 MtrunA17_Chr3g0130321 51.707 205 66 9 7 178 4 208 1.39e-57 179
Msa1369210 MtrunA17_Chr4g0050701 46.032 189 74 6 10 178 11 191 9.00e-49 156
Msa1369210 MtrunA17_Chr4g0042561 38.021 192 92 7 2 169 1 189 4.16e-31 113
Msa1369210 MtrunA17_Chr2g0318101 37.017 181 81 5 10 157 15 195 2.74e-30 113
Msa1369210 MtrunA17_Chr8g0384721 42.405 158 68 6 5 139 2 159 2.96e-29 108
Msa1369210 MtrunA17_Chr5g0417791 37.222 180 88 6 8 162 1 180 4.39e-29 108
Msa1369210 MtrunA17_Chr7g0214071 40.244 164 73 7 8 150 13 172 1.80e-28 106
Msa1369210 MtrunA17_Chr3g0124761 36.872 179 91 6 6 162 3 181 1.98e-27 104
Msa1369210 MtrunA17_Chr2g0326361 36.257 171 83 5 3 147 7 177 9.43e-27 103
Msa1369210 MtrunA17_Chr7g0263931 38.728 173 79 7 6 152 7 178 1.02e-26 103
Msa1369210 MtrunA17_Chr4g0047841 37.288 177 66 6 10 141 15 191 1.03e-25 100
Msa1369210 MtrunA17_Chr3g0130731 38.854 157 74 6 5 139 2 158 2.56e-25 99.0
Msa1369210 MtrunA17_Chr8g0359921 39.634 164 69 7 6 143 10 169 6.85e-25 98.6
Msa1369210 MtrunA17_Chr3g0091921 36.810 163 81 5 10 150 16 178 8.33e-25 97.8
Msa1369210 MtrunA17_Chr2g0318081 37.975 158 78 5 6 143 12 169 1.00e-24 98.2
Msa1369210 MtrunA17_Chr7g0252971 37.059 170 73 7 2 138 1 169 1.31e-24 97.8
Msa1369210 MtrunA17_Chr6g0484441 38.000 150 75 5 10 141 5 154 3.92e-24 96.3
Msa1369210 MtrunA17_Chr4g0060931 38.411 151 71 5 10 138 17 167 6.18e-24 96.3
Msa1369210 MtrunA17_Chr1g0147421 40.667 150 68 5 10 138 27 176 2.92e-23 94.4
Msa1369210 MtrunA17_Chr3g0131911 37.195 164 71 7 9 142 13 174 3.39e-23 92.0
Msa1369210 MtrunA17_Chr4g0017921 33.508 191 102 8 4 169 2 192 6.33e-23 93.6
Msa1369210 MtrunA17_Chr3g0139331 36.310 168 87 5 10 157 11 178 8.90e-23 92.8
Msa1369210 MtrunA17_Chr8g0385991 34.810 158 78 5 9 141 13 170 3.28e-22 89.4
Msa1369210 MtrunA17_Chr3g0109821 38.312 154 72 6 8 138 4 157 4.02e-22 92.4
Msa1369210 MtrunA17_Chr2g0309331 34.118 170 90 7 1 148 1 170 7.58e-22 90.5
Msa1369210 MtrunA17_Chr1g0183741 35.897 156 82 5 8 145 8 163 3.70e-21 87.4
Msa1369210 MtrunA17_Chr7g0253011 31.841 201 103 6 3 177 10 202 4.68e-21 88.6
Msa1369210 MtrunA17_Chr2g0312321 36.601 153 72 7 8 138 9 158 8.38e-21 87.0
Msa1369210 MtrunA17_Chr6g0481091 36.774 155 76 6 6 138 2 156 8.42e-21 85.9
Msa1369210 MtrunA17_Chr6g0453451 33.136 169 91 5 4 150 14 182 1.73e-20 86.3
Msa1369210 MtrunA17_Chr7g0261411 36.735 147 75 5 8 136 8 154 2.22e-20 85.9
Msa1369210 MtrunA17_Chr5g0433781 37.179 156 74 7 6 138 2 156 2.46e-20 87.4
Msa1369210 MtrunA17_Chr1g0197351 34.395 157 75 6 10 138 42 198 4.18e-20 86.7
Msa1369210 MtrunA17_Chr2g0309891 31.868 182 99 8 6 162 2 183 4.36e-20 85.5
Msa1369210 MtrunA17_Chr5g0405211 32.812 192 97 9 10 173 8 195 7.69e-20 85.1
Msa1369210 MtrunA17_Chr4g0018391 33.679 193 99 9 10 178 7 194 9.39e-20 84.7
Msa1369210 MtrunA17_Chr2g0316971 37.908 153 71 6 10 138 23 175 1.03e-19 85.1
Msa1369210 MtrunA17_Chr8g0372121 35.152 165 82 8 10 151 6 168 1.34e-19 84.0
Msa1369210 MtrunA17_Chr5g0398971 35.256 156 76 7 10 141 7 161 1.89e-19 84.0
Msa1369210 MtrunA17_Chr4g0056541 34.641 153 79 6 10 141 7 159 1.36e-18 81.6
Msa1369210 MtrunA17_Chr6g0453131 33.537 164 75 7 10 141 15 176 1.81e-18 81.6
Msa1369210 MtrunA17_Chr8g0346001 32.515 163 78 7 9 139 14 176 2.67e-18 81.3
Msa1369210 MtrunA17_Chr3g0130101 36.667 150 73 7 12 139 9 158 1.02e-17 79.3
Msa1369210 MtrunA17_Chr4g0076731 35.570 149 71 6 12 138 56 201 1.51e-17 79.0
Msa1369210 MtrunA17_Chr1g0200561 35.849 159 77 8 2 138 13 168 1.55e-17 78.6
Msa1369210 MtrunA17_Chr2g0311651 29.518 166 81 6 12 141 24 189 2.69e-17 77.8
Msa1369210 MtrunA17_Chr8g0345671 34.932 146 74 6 10 135 11 155 3.00e-17 78.2
Msa1369210 MtrunA17_Chr3g0144271 37.500 152 73 5 10 142 23 171 3.17e-17 78.2
Msa1369210 MtrunA17_Chr5g0417001 32.500 160 78 6 12 141 16 175 3.39e-17 77.8
Msa1369210 MtrunA17_Chr8g0361731 31.646 158 77 6 12 138 16 173 5.68e-17 77.4
Msa1369210 MtrunA17_Chr6g0461661 33.962 159 81 5 4 138 12 170 9.29e-17 76.6
Msa1369210 MtrunA17_Chr2g0311661 29.167 168 83 6 12 143 23 190 1.16e-16 75.5
Msa1369210 MtrunA17_Chr5g0400461 33.129 163 80 7 2 138 1 160 1.33e-16 75.9
Msa1369210 MtrunA17_Chr5g0442771 28.049 164 86 5 12 143 20 183 1.33e-16 75.9
Msa1369210 MtrunA17_Chr4g0054791 31.492 181 99 7 8 163 4 184 2.05e-16 75.1
Msa1369210 MtrunA17_Chr7g0217721 33.533 167 76 6 8 139 17 183 2.78e-16 75.1
Msa1369210 MtrunA17_Chr4g0038751 33.939 165 77 8 12 149 17 176 7.34e-16 73.6
Msa1369210 MtrunA17_Chr5g0428991 33.548 155 77 7 9 139 24 176 1.19e-15 73.9
Msa1369210 MtrunA17_Chr7g0217711 34.483 145 71 5 8 128 17 161 3.39e-15 69.7
Msa1369210 MtrunA17_Chr3g0092671 31.847 157 85 6 7 141 2 158 3.45e-15 72.4
Msa1369210 MtrunA17_Chr8g0384201 31.373 153 83 6 9 139 5 157 7.41e-15 71.6
Msa1369210 MtrunA17_Chr8g0364791 31.410 156 79 7 9 139 5 157 2.55e-14 70.1
Msa1369210 MtrunA17_Chr8g0345691 31.507 146 79 6 10 135 12 156 2.71e-14 69.7
Msa1369210 MtrunA17_Chr3g0128151 33.333 153 76 7 10 138 22 172 4.48e-14 69.3
Msa1369210 MtrunA17_Chr8g0345731 32.609 138 70 5 10 124 24 161 4.86e-14 66.6
Msa1369210 MtrunA17_Chr1g0201021 34.127 126 65 5 12 119 21 146 8.54e-12 62.8
Msa1369210 MtrunA17_Chr8g0345711 30.657 137 75 4 10 126 12 148 1.52e-11 60.1
Msa1369210 MtrunA17_Chr3g0113031 44.186 86 33 4 69 139 8 93 2.83e-11 60.5
Msa1369210 MtrunA17_Chr8g0345701 30.719 153 72 5 5 125 2 152 4.06e-11 58.9
Msa1369210 MtrunA17_Chr3g0113001 38.739 111 43 6 66 154 22 129 4.71e-11 60.1
Msa1369210 MtrunA17_Chr4g0026141 31.410 156 78 8 10 136 5 160 9.14e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369210 AT5G64530.1 46.465 198 67 7 8 177 1 187 5.17e-50 160
Msa1369210 AT5G64530.2 51.261 119 50 3 8 119 1 118 4.45e-36 123
Msa1369210 AT1G61110.1 41.317 167 65 6 10 143 16 182 2.44e-29 110
Msa1369210 AT1G77450.1 41.615 161 72 6 1 139 1 161 7.73e-29 107
Msa1369210 AT2G33480.2 41.026 156 71 6 8 145 13 165 2.05e-28 106
Msa1369210 AT2G33480.1 41.139 158 70 7 8 145 13 167 2.81e-28 106
Msa1369210 AT1G69490.1 37.234 188 86 7 2 165 1 180 1.40e-27 104
Msa1369210 AT1G01720.1 42.581 155 66 6 8 139 5 159 2.85e-27 104
Msa1369210 AT5G39610.1 38.509 161 77 5 1 139 11 171 2.71e-26 101
Msa1369210 AT3G04070.2 37.363 182 80 8 1 150 1 180 5.31e-26 102
Msa1369210 AT5G63790.1 39.623 159 72 6 5 139 45 203 2.21e-25 99.8
Msa1369210 AT1G52890.1 36.686 169 83 6 6 154 10 174 2.36e-25 99.8
Msa1369210 AT5G63790.2 39.623 159 72 6 5 139 55 213 3.06e-25 99.8
Msa1369210 AT3G18400.1 37.419 155 78 5 10 145 5 159 3.24e-25 99.4
Msa1369210 AT5G13180.1 38.608 158 67 7 8 141 12 163 3.66e-25 97.8
Msa1369210 AT3G15500.1 35.088 171 91 5 6 156 10 180 5.09e-25 99.0
Msa1369210 AT2G24430.2 40.000 150 69 5 10 138 16 165 1.54e-24 97.4
Msa1369210 AT2G24430.1 40.000 150 69 5 10 138 16 165 1.54e-24 97.4
Msa1369210 AT5G61430.1 37.821 156 75 5 5 138 11 166 2.14e-24 97.4
Msa1369210 AT5G07680.1 39.073 151 70 5 10 138 17 167 3.01e-24 97.1
Msa1369210 AT3G12977.1 33.140 172 92 6 8 158 16 185 3.42e-24 95.9
Msa1369210 AT5G07680.2 39.073 151 70 5 10 138 3 153 3.45e-24 96.7
Msa1369210 AT4G27410.2 36.000 200 96 9 6 174 10 208 4.64e-24 95.9
Msa1369210 AT5G08790.1 39.623 159 72 6 5 139 2 160 8.99e-24 95.1
Msa1369210 AT3G04070.1 34.343 198 80 8 1 150 1 196 1.25e-23 95.9
Msa1369210 AT1G56010.2 36.129 155 75 6 8 138 17 171 2.79e-23 94.4
Msa1369210 AT3G15510.1 32.308 195 93 6 14 175 21 209 4.95e-23 94.4
Msa1369210 AT5G18270.2 37.107 159 77 5 3 138 14 172 7.54e-23 93.2
Msa1369210 AT3G04060.1 33.333 198 102 8 3 177 13 203 8.66e-23 93.2
Msa1369210 AT5G18270.1 36.478 159 78 5 3 138 14 172 1.90e-22 92.4
Msa1369210 AT4G10350.1 37.267 161 78 7 2 139 1 161 5.96e-22 90.9
Msa1369210 AT1G79580.3 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa1369210 AT1G79580.5 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa1369210 AT1G79580.4 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa1369210 AT1G79580.2 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa1369210 AT1G79580.1 36.471 170 81 8 2 144 3 172 1.17e-21 90.5
Msa1369210 AT3G17730.1 37.419 155 75 6 6 138 2 156 1.52e-21 88.2
Msa1369210 AT5G53950.1 36.207 174 86 7 10 158 17 190 2.03e-21 90.1
Msa1369210 AT4G27410.3 33.784 222 97 11 6 178 10 230 2.37e-21 89.0
Msa1369210 AT1G33280.1 36.538 156 79 6 4 139 2 157 3.42e-21 88.6
Msa1369210 AT3G29035.1 41.406 128 59 4 8 119 22 149 7.70e-21 87.8
Msa1369210 AT3G15170.1 36.601 153 73 5 10 138 20 172 1.00e-20 87.4
Msa1369210 AT5G62380.2 33.962 159 82 7 5 141 2 159 1.04e-20 87.8
Msa1369210 AT5G62380.1 33.962 159 82 7 5 141 2 159 1.04e-20 87.8
Msa1369210 AT3G10480.2 36.774 155 76 7 6 138 23 177 1.22e-20 88.2
Msa1369210 AT3G10480.1 36.538 156 76 7 6 138 23 178 1.69e-20 87.8
Msa1369210 AT1G76420.1 35.583 163 77 7 1 138 12 171 2.50e-20 86.7
Msa1369210 AT5G17260.1 35.256 156 78 6 6 138 2 157 4.17e-20 87.0
Msa1369210 AT3G10490.1 34.194 155 79 7 7 138 24 178 6.10e-20 84.0
Msa1369210 AT3G03200.1 35.065 154 77 6 8 138 4 157 1.34e-19 85.5
Msa1369210 AT2G18060.3 32.515 163 89 6 7 148 6 168 2.20e-19 84.3
Msa1369210 AT2G18060.1 32.515 163 89 6 7 148 6 168 2.20e-19 84.3
Msa1369210 AT4G36160.2 33.529 170 91 7 1 148 5 174 3.12e-19 84.0
Msa1369210 AT4G36160.1 33.529 170 91 7 1 148 1 170 3.32e-19 84.0
Msa1369210 AT4G36160.3 33.529 170 91 7 1 148 1 170 3.32e-19 84.0
Msa1369210 AT3G10490.2 34.194 155 79 7 7 138 24 178 4.18e-19 84.0
Msa1369210 AT1G65910.1 36.601 153 75 6 8 138 4 156 4.24e-19 84.3
Msa1369210 AT1G32770.1 31.707 164 79 6 9 139 15 178 4.74e-19 83.2
Msa1369210 AT2G43000.1 30.769 156 87 5 12 146 20 175 5.01e-19 82.0
Msa1369210 AT1G52880.1 36.250 160 70 6 14 141 21 180 5.05e-19 82.8
Msa1369210 AT5G04410.1 35.185 162 77 7 2 138 1 159 7.77e-19 83.6
Msa1369210 AT3G61910.1 33.133 166 75 7 9 138 10 175 7.92e-19 82.4
Msa1369210 AT1G54330.1 34.868 152 80 6 8 140 4 155 8.73e-19 82.0
Msa1369210 AT1G12260.2 34.839 155 76 7 10 141 7 159 3.34e-18 80.9
Msa1369210 AT1G12260.1 34.839 155 76 7 10 141 7 159 5.62e-18 80.5
Msa1369210 AT1G62700.1 34.839 155 78 7 9 141 6 159 5.70e-18 80.5
Msa1369210 AT1G62700.2 34.839 155 78 7 9 141 6 159 5.70e-18 80.5
Msa1369210 AT3G10500.1 34.545 165 80 7 2 141 1 162 7.59e-18 80.5
Msa1369210 AT4G35580.1 34.161 161 80 7 2 138 1 159 1.00e-17 80.1
Msa1369210 AT4G35580.2 34.161 161 80 7 2 138 1 159 1.17e-17 80.1
Msa1369210 AT4G35580.3 34.161 161 80 7 2 138 1 159 1.19e-17 80.1
Msa1369210 AT4G17980.1 34.969 163 77 7 2 138 1 160 1.22e-17 78.2
Msa1369210 AT5G46590.1 34.783 161 78 7 2 138 1 158 1.28e-17 78.6
Msa1369210 AT4G28530.1 33.333 165 74 6 9 138 9 172 1.37e-17 79.3
Msa1369210 AT4G17980.2 34.969 163 77 7 2 138 1 160 1.43e-17 78.6
Msa1369210 AT1G33060.2 33.987 153 75 7 10 138 24 174 1.57e-17 79.7
Msa1369210 AT1G33060.1 33.987 153 75 7 10 138 24 174 1.68e-17 79.7
Msa1369210 AT5G66300.1 32.704 159 81 7 7 141 9 165 2.55e-17 77.8
Msa1369210 AT3G12910.1 30.114 176 84 9 5 143 17 190 5.53e-17 77.0
Msa1369210 AT1G71930.2 32.258 155 84 6 10 143 9 163 8.08e-17 76.6
Msa1369210 AT1G71930.1 32.258 155 84 6 10 143 9 163 8.08e-17 76.6
Msa1369210 AT2G46770.1 30.460 174 79 7 9 143 15 185 1.35e-16 76.6
Msa1369210 AT5G39820.1 30.814 172 72 7 12 138 22 191 2.73e-16 75.5
Msa1369210 AT5G46590.2 36.232 138 66 6 2 120 1 135 2.87e-16 74.7
Msa1369210 AT1G02230.1 33.103 145 77 5 11 135 4 148 3.18e-16 75.5
Msa1369210 AT2G02450.1 33.557 149 74 6 12 138 53 198 3.36e-16 75.5
Msa1369210 AT2G02450.2 33.557 149 74 6 12 138 53 198 4.05e-16 75.5
Msa1369210 AT1G26870.1 32.500 160 77 6 10 138 16 175 4.83e-16 75.1
Msa1369210 AT2G17040.1 35.065 154 70 7 12 141 8 155 7.97e-16 73.6
Msa1369210 AT5G22290.1 29.221 154 90 5 12 148 23 174 1.10e-15 73.9
Msa1369210 AT1G32510.1 33.962 159 75 7 10 138 6 164 2.64e-15 72.0
Msa1369210 AT5G50820.1 33.333 138 74 4 6 128 13 147 2.26e-14 68.2
Msa1369210 AT1G02250.1 32.877 146 76 5 11 135 4 148 3.42e-14 69.7
Msa1369210 AT5G14000.1 30.058 173 100 6 8 161 13 183 5.61e-14 67.4
Msa1369210 AT3G04420.2 32.432 148 79 6 11 138 4 150 1.11e-13 67.8
Msa1369210 AT3G04420.1 32.414 145 77 6 11 135 4 147 1.20e-13 68.2
Msa1369210 AT1G34190.1 37.097 124 60 5 12 117 18 141 1.29e-13 68.6
Msa1369210 AT3G49530.1 29.762 168 91 7 10 152 13 178 1.81e-13 67.8
Msa1369210 AT4G01520.1 31.818 154 81 6 8 138 2 154 1.81e-13 67.4
Msa1369210 AT3G49530.2 29.762 168 91 7 10 152 13 178 2.73e-13 67.4
Msa1369210 AT1G34180.1 34.921 126 64 5 12 119 18 143 6.32e-12 63.5
Msa1369210 AT1G34180.3 34.921 126 64 5 12 119 18 143 8.01e-12 63.2
Msa1369210 AT1G56010.1 38.043 92 43 4 61 138 13 104 2.31e-11 60.8
Msa1369210 AT5G61430.2 38.202 89 42 3 63 138 15 103 2.66e-11 60.8
Msa1369210 AT2G33480.3 42.353 85 38 4 72 145 26 110 2.74e-11 60.1
Msa1369210 AT2G43000.2 31.522 92 51 3 67 146 6 97 7.87e-11 58.9

Find 45 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACAAAACCTATAAATAAAT+TGG 0.146052 tig0018755:-150558 Msa1369210:CDS
TTCATTCCCAATTTATTTAT+AGG 0.164515 tig0018755:+150551 None:intergenic
AATGGATATTGGAAGGAAAT+TGG 0.199332 tig0018755:-150584 Msa1369210:CDS
AAGCTAATTATTAACTAATT+AGG 0.204594 tig0018755:+147186 None:intergenic
GAAAATAGAAGCACTGAAAA+TGG 0.301344 tig0018755:-150602 Msa1369210:CDS
ATGGATATTGGAAGGAAATT+GGG 0.330470 tig0018755:-150583 Msa1369210:CDS
GTGTGAGACAGGATCATAAT+TGG 0.363529 tig0018755:-147356 Msa1369210:intron
GAAGCACTGAAAATGGATAT+TGG 0.365813 tig0018755:-150595 Msa1369210:CDS
TGGTGAGACAAGTGAAGTTC+AGG 0.398752 tig0018755:+151301 None:intergenic
CATGATCCTTGGGAAATATA+CGG 0.400748 tig0018755:-151280 Msa1369210:intron
AGTACCTTGTATTCAACCTT+GGG 0.405124 tig0018755:-150526 Msa1369210:CDS
ACTTGTCTCACCATGATCCT+TGG 0.405810 tig0018755:-151291 Msa1369210:CDS
CTTGTCTCACCATGATCCTT+GGG 0.421667 tig0018755:-151290 Msa1369210:CDS
GGTATGATGCTAGGATGATA+TGG 0.434256 tig0018755:+151322 None:intergenic
GATGAGGATATTGATGATAA+TGG 0.434866 tig0018755:-147276 Msa1369210:CDS
CTTCCCCAAGGTTGAATACA+AGG 0.441845 tig0018755:+150522 None:intergenic
ACAAAACCTATAAATAAATT+GGG 0.452946 tig0018755:-150557 Msa1369210:CDS
AGCAGCGTGAAGCTTCCTCC+TGG 0.455992 tig0018755:-151409 Msa1369210:CDS
AATTGAAACAAGTTGGGTAA+TGG 0.457936 tig0018755:-150498 Msa1369210:CDS
GGGAAGGAATTGAAACAAGT+TGG 0.476317 tig0018755:-150505 Msa1369210:CDS
ATGATATGGTAAAGAAGCCT+TGG 0.489756 tig0018755:+151336 None:intergenic
CGTATATTTCCCAAGGATCA+TGG 0.491411 tig0018755:+151281 None:intergenic
GGAAGGAATTGAAACAAGTT+GGG 0.495348 tig0018755:-150504 Msa1369210:CDS
ATATCATATTTCCTCATCTC+CGG 0.517814 tig0018755:-150471 Msa1369210:intron
AGGACTAGTTCTTCATCCGT+TGG 0.520052 tig0018755:+151373 None:intergenic
AGGATCATAATTGGAGCAGA+TGG 0.520438 tig0018755:-147347 Msa1369210:CDS
TAATTATTAACTAATTAGGT+AGG 0.520877 tig0018755:+147190 None:intergenic
TGGATATTGGAAGGAAATTG+GGG 0.532640 tig0018755:-150582 Msa1369210:CDS
AAGTACCTTGTATTCAACCT+TGG 0.541631 tig0018755:-150527 Msa1369210:CDS
CTTGTATTCAACCTTGGGGA+AGG 0.542660 tig0018755:-150521 Msa1369210:CDS
GCAGCGTGAAGCTTCCTCCT+GGG 0.544030 tig0018755:-151408 Msa1369210:CDS
TGAAGTTCAGGTATGATGCT+AGG 0.561302 tig0018755:+151313 None:intergenic
TTGTTTCAATTCCTTCCCCA+AGG 0.571160 tig0018755:+150510 None:intergenic
GGATCATAATTGGAGCAGAT+GGG 0.571776 tig0018755:-147346 Msa1369210:CDS
CCTTGGAATAGAGAAAATGA+AGG 0.572117 tig0018755:+151353 None:intergenic
CACTGAAAATGGATATTGGA+AGG 0.575605 tig0018755:-150591 Msa1369210:CDS
GAAAAGAAGATGTCACATCA+AGG 0.579347 tig0018755:-147306 Msa1369210:CDS
ACAATCACTTACCGGAGATG+AGG 0.598757 tig0018755:+150460 None:intergenic
GACATACCGTATATTTCCCA+AGG 0.621341 tig0018755:+151274 None:intergenic
ACAGGTAAAGCATTGTCAAG+TGG 0.622513 tig0018755:-150656 Msa1369210:intron
ACATCAAGGTGCAAGCGATG+AGG 0.654589 tig0018755:-147292 Msa1369210:CDS
GTACCTTGTATTCAACCTTG+GGG 0.661844 tig0018755:-150525 Msa1369210:CDS
ATAATGGAACAGATGTGTCA+TGG 0.669182 tig0018755:-147260 Msa1369210:CDS
GTTGGATCAAAGTAAAACCC+AGG 0.688035 tig0018755:+151391 None:intergenic
GGATCAAAGTAAAACCCAGG+AGG 0.734981 tig0018755:+151394 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATTTAAAATAAAAAT+AGG + tig0018755:150330-150349 None:intergenic 0.0%
!! TAAATTGGTATTATATATAT+AGG + tig0018755:147475-147494 None:intergenic 10.0%
!!! TTTTCTTTTAAAATAGAATA+TGG - tig0018755:147706-147725 Msa1369210:intron 10.0%
!!! ATTTATTTTATTTTTTTACC+CGG + tig0018755:147813-147832 None:intergenic 10.0%
!!! ATTATTCTAAGTTTTTTTTT+AGG - tig0018755:148315-148334 Msa1369210:intron 10.0%
!!! TTATTCTAAGTTTTTTTTTA+GGG - tig0018755:148316-148335 Msa1369210:intron 10.0%
!! TAATTTAAAAAATTGATTAG+GGG + tig0018755:148366-148385 None:intergenic 10.0%
!! ATAGCTAAAAATATAAAAAT+TGG + tig0018755:148428-148447 None:intergenic 10.0%
!! AAAAAGGTAATAAAATTAAA+TGG + tig0018755:148822-148841 None:intergenic 10.0%
!! AAATGAGATAAAAAATATTT+GGG + tig0018755:148950-148969 None:intergenic 10.0%
!! GAAAATAGTTAAAAAAAAAT+TGG + tig0018755:149095-149114 None:intergenic 10.0%
!!! AGAGATTTTTTATTTTTTAA+CGG - tig0018755:149351-149370 Msa1369210:intron 10.0%
!! AATTTACTTAATTTATTATC+GGG + tig0018755:150214-150233 None:intergenic 10.0%
!! TATTTGACAAAATATTATAT+TGG + tig0018755:151122-151141 None:intergenic 10.0%
!! TATAATTAATCTATAAGTGA+TGG + tig0018755:147769-147788 None:intergenic 15.0%
!!! TCAAATTTTTATCTAAAATC+CGG - tig0018755:147791-147810 Msa1369210:intron 15.0%
!! ACAAAACCTATAAATAAATT+GGG - tig0018755:148049-148068 Msa1369210:intron 15.0%
!! TCATATTAGTTATTATAGAT+TGG + tig0018755:148237-148256 None:intergenic 15.0%
!! TACTTAATTGATATTGTATT+CGG + tig0018755:148565-148584 None:intergenic 15.0%
!!! TTTTATTACCTTTTTTTCAA+AGG - tig0018755:148827-148846 Msa1369210:intron 15.0%
!!! ATAAAATTCCTTTGAAAAAA+AGG + tig0018755:148838-148857 None:intergenic 15.0%
!! GAAATGAGATAAAAAATATT+TGG + tig0018755:148951-148970 None:intergenic 15.0%
!!! TAATTTATTCATTTTTCCTT+CGG - tig0018755:149605-149624 Msa1369210:intron 15.0%
!! ATAAAAATAGGTTATTATTG+AGG + tig0018755:150318-150337 None:intergenic 15.0%
!! AACACAAAATGATATAAATT+AGG - tig0018755:150741-150760 Msa1369210:intron 15.0%
!! ACAAAATTAAATCTTCAAAA+TGG + tig0018755:151026-151045 None:intergenic 15.0%
!! TAATTATTAACTAATTAGGT+AGG + tig0018755:151419-151438 None:intergenic 15.0%
!! AAGCTAATTATTAACTAATT+AGG + tig0018755:151423-151442 None:intergenic 15.0%
!! AGTGTTAAGACAAAATAAAT+TGG + tig0018755:147490-147509 None:intergenic 20.0%
!! ATTCTAAATACCATCTAAAT+TGG - tig0018755:147586-147605 Msa1369210:intron 20.0%
!! TTCTAAATACCATCTAAATT+GGG - tig0018755:147587-147606 Msa1369210:intron 20.0%
!! ATTAGCAATAACATATGTTA+AGG + tig0018755:147632-147651 None:intergenic 20.0%
!!! CATAGCATATAATTGAATTT+TGG + tig0018755:147681-147700 None:intergenic 20.0%
!!! CAAATTTTTATCTAAAATCC+GGG - tig0018755:147792-147811 Msa1369210:intron 20.0%
!!! GATAGGTTTTACATAAATTT+TGG + tig0018755:147859-147878 None:intergenic 20.0%
!! CACAAAACCTATAAATAAAT+TGG - tig0018755:148048-148067 Msa1369210:intron 20.0%
!! TTCATTCCCAATTTATTTAT+AGG + tig0018755:148058-148077 None:intergenic 20.0%
!!! ATTTGTTGTGATTTATGAAT+AGG + tig0018755:148190-148209 None:intergenic 20.0%
!!! TAGAGAAGTTTTAAAAAAGT+CGG + tig0018755:148521-148540 None:intergenic 20.0%
!!! TTTGAAAGCATAAAATTGAA+TGG - tig0018755:148606-148625 Msa1369210:intron 20.0%
!! TCCTTAAAAAATTAATGGAA+CGG + tig0018755:148795-148814 None:intergenic 20.0%
!!! ATAATTTTTTTAGTGTTGCT+TGG - tig0018755:149054-149073 Msa1369210:intron 20.0%
!! TAGTTAAAAAAAAATTGGTG+AGG + tig0018755:149090-149109 None:intergenic 20.0%
!!! ACTATTTAAAACTAAGTTGA+TGG - tig0018755:149167-149186 Msa1369210:intron 20.0%
!!! ATTTTGTGTCATGTAAATAT+TGG - tig0018755:149438-149457 Msa1369210:intron 20.0%
!!! TATTGGTATTAATCCATTTT+TGG - tig0018755:149455-149474 Msa1369210:intron 20.0%
!! TTTATATACGTTGAATTGAA+AGG - tig0018755:149846-149865 Msa1369210:intron 20.0%
!! CATATCTTATTACTTAAAGT+TGG - tig0018755:150254-150273 Msa1369210:intron 20.0%
!!! ATGATTTATGAAATTTTGAG+TGG - tig0018755:150442-150461 Msa1369210:intron 20.0%
!!! GTTTAAAAGTTGAAGTTTTT+TGG - tig0018755:150478-150497 Msa1369210:CDS 20.0%
!! TAAATAAATTCAAAACTCCA+TGG - tig0018755:150534-150553 Msa1369210:CDS 20.0%
!! AAATAAATTCAAAACTCCAT+GGG - tig0018755:150535-150554 Msa1369210:CDS 20.0%
!! AAGTCAAAATGATATAAATC+AGG - tig0018755:150891-150910 Msa1369210:intron 20.0%
!! AGATAGATATCAATTATTAC+TGG - tig0018755:150946-150965 Msa1369210:intron 20.0%
!! GTACTCTAAATATTGTATTA+TGG - tig0018755:151062-151081 Msa1369210:intron 20.0%
!! TGACAAAATATTATATTGGA+AGG + tig0018755:151118-151137 None:intergenic 20.0%
! TCTATATATGCATGCATATA+TGG + tig0018755:147440-147459 None:intergenic 25.0%
!! ATTAATCTATAAGTGATGGA+TGG + tig0018755:147765-147784 None:intergenic 25.0%
!!! AGAGAAGTTTTAAAAAAGTC+GGG + tig0018755:148520-148539 None:intergenic 25.0%
!! AAAACTTCTCTACACTTTTA+AGG - tig0018755:148529-148548 Msa1369210:intron 25.0%
!!! ACCGTTCCATTAATTTTTTA+AGG - tig0018755:148791-148810 Msa1369210:intron 25.0%
!!! GTTCCATTAATTTTTTAAGG+AGG - tig0018755:148794-148813 Msa1369210:intron 25.0%
! GAACCTCCTTAAAAAATTAA+TGG + tig0018755:148800-148819 None:intergenic 25.0%
! TGTAAAAAAAATTGTTCCGA+AGG + tig0018755:149624-149643 None:intergenic 25.0%
! ATTCTCAAATTTACGAAGAA+TGG - tig0018755:149696-149715 Msa1369210:intron 25.0%
! ATGATATAAATCAAGTAGAG+AGG - tig0018755:149873-149892 Msa1369210:intron 25.0%
! TTTGACTACCCATTATTATA+TGG - tig0018755:150143-150162 Msa1369210:intron 25.0%
! CTTAATTTATTATCGGGTAT+GGG + tig0018755:150208-150227 None:intergenic 25.0%
! ACTTAATTTATTATCGGGTA+TGG + tig0018755:150209-150228 None:intergenic 25.0%
!! CGGTAAAATTTTCTTCAATA+AGG + tig0018755:150282-150301 None:intergenic 25.0%
!!! ATTATTGAGGATTTTTAGGT+GGG + tig0018755:150305-150324 None:intergenic 25.0%
!!! TATTATTGAGGATTTTTAGG+TGG + tig0018755:150306-150325 None:intergenic 25.0%
!! GGTTATTATTGAGGATTTTT+AGG + tig0018755:150309-150328 None:intergenic 25.0%
!!! AATTTTGAGTGGATTATGTA+TGG - tig0018755:150453-150472 Msa1369210:intron 25.0%
! ATGATATAAATTAGGTAGAG+AGG - tig0018755:150749-150768 Msa1369210:intron 25.0%
! ATGAAAACATATTTAGTCAG+CGG + tig0018755:150985-151004 None:intergenic 25.0%
ATTGATCAAGTGACATATAC+TGG - tig0018755:147402-147421 Msa1369210:intron 30.0%
!!! CTTACTTTCTAGCTGAATTT+TGG + tig0018755:147543-147562 None:intergenic 30.0%
ATTCAATGATCGATTAATCC+CGG - tig0018755:147729-147748 Msa1369210:intron 30.0%
!! AAGAGTACGATTTTTCAGAT+AGG + tig0018755:147876-147895 None:intergenic 30.0%
AATCGTACTCTTTATAGTTG+TGG - tig0018755:147884-147903 Msa1369210:intron 30.0%
! AAAGGCATGTATATTTCTTG+GGG + tig0018755:147926-147945 None:intergenic 30.0%
! CAAAGGCATGTATATTTCTT+GGG + tig0018755:147927-147946 None:intergenic 30.0%
! ACAAAGGCATGTATATTTCT+TGG + tig0018755:147928-147947 None:intergenic 30.0%
ATATACATGCCTTTGTAAAC+AGG - tig0018755:147932-147951 Msa1369210:intron 30.0%
AATGCTTTACCTGTTTACAA+AGG + tig0018755:147944-147963 None:intergenic 30.0%
!! GAAAATAGAAGCACTGAAAA+TGG - tig0018755:148004-148023 Msa1369210:intron 30.0%
AATGGATATTGGAAGGAAAT+TGG - tig0018755:148022-148041 Msa1369210:intron 30.0%
ATGGATATTGGAAGGAAATT+GGG - tig0018755:148023-148042 Msa1369210:intron 30.0%
! AATTGAAACAAGTTGGGTAA+TGG - tig0018755:148108-148127 Msa1369210:intron 30.0%
ATATCATATTTCCTCATCTC+CGG - tig0018755:148135-148154 Msa1369210:intron 30.0%
AACAAAACACAATCACTTAC+CGG + tig0018755:148157-148176 None:intergenic 30.0%
!!! TCTAAGTTTTTTTTTAGGGC+TGG - tig0018755:148320-148339 Msa1369210:intron 30.0%
AAATTGATTAGGGGCAAAAA+TGG + tig0018755:148357-148376 None:intergenic 30.0%
ATGTAGAAGCAACTGAATTT+GGG + tig0018755:148466-148485 None:intergenic 30.0%
AATGTAGAAGCAACTGAATT+TGG + tig0018755:148467-148486 None:intergenic 30.0%
!! TACACTTTTAAGGAGAAGTT+AGG - tig0018755:148539-148558 Msa1369210:intron 30.0%
!! AAAACTAAGTTGATGGTTCA+TGG - tig0018755:149174-149193 Msa1369210:intron 30.0%
!! TTGATGGTTCATGGTTTTTA+AGG - tig0018755:149183-149202 Msa1369210:intron 30.0%
AAGGATAGATGGTAAAATGA+CGG + tig0018755:149245-149264 None:intergenic 30.0%
GATTACATTGAAAGGATAGA+TGG + tig0018755:149256-149275 None:intergenic 30.0%
ATGCTTAGTAATATTCACTC+TGG + tig0018755:149281-149300 None:intergenic 30.0%
ATTACTAAGCATATGTGAAG+AGG - tig0018755:149289-149308 Msa1369210:intron 30.0%
TGTCATAGAGTTACCAAAAA+TGG + tig0018755:149471-149490 None:intergenic 30.0%
TCCAAATATTTGTGATGCAT+GGG + tig0018755:149663-149682 None:intergenic 30.0%
ATCCAAATATTTGTGATGCA+TGG + tig0018755:149664-149683 None:intergenic 30.0%
CTTCGTAAATTTGAGAATGA+AGG + tig0018755:149694-149713 None:intergenic 30.0%
AAGGAGAGATGTTCAAATTA+CGG + tig0018755:149729-149748 None:intergenic 30.0%
GTACCTATAATTCACATGAA+AGG - tig0018755:149768-149787 Msa1369210:intron 30.0%
AGTCCTTTCATGTGAATTAT+AGG + tig0018755:149774-149793 None:intergenic 30.0%
TTTCACATGATCTACAACAA+AGG + tig0018755:149823-149842 None:intergenic 30.0%
! TTTGTTGTAGATCATGTGAA+GGG - tig0018755:149822-149841 Msa1369210:intron 30.0%
ATACTCATTTATTATACCCG+TGG + tig0018755:150124-150143 None:intergenic 30.0%
GTCTGTGTCCATATAATAAT+GGG + tig0018755:150154-150173 None:intergenic 30.0%
TGTCTGTGTCCATATAATAA+TGG + tig0018755:150155-150174 None:intergenic 30.0%
TTATTATATGGACACAGACA+CGG - tig0018755:150155-150174 Msa1369210:intron 30.0%
! GTTTTATGATGTGAATGAAG+TGG + tig0018755:150380-150399 None:intergenic 30.0%
TATCATATTATCCGTATCCA+TGG - tig0018755:150661-150680 Msa1369210:intron 30.0%
ATCATATTATCCGTATCCAT+GGG - tig0018755:150662-150681 Msa1369210:intron 30.0%
ATTTAGTATCCAGTTCTTTC+AGG + tig0018755:150810-150829 None:intergenic 30.0%
TTTCACATGATCTACAACAA+AGG + tig0018755:149823-149842 None:intergenic 30.0%
TGATATAAATCAGGTAGCTT+TGG - tig0018755:150900-150919 Msa1369210:intron 30.0%
!! TTTGGTAATAGGGTTTTCAT+TGG - tig0018755:150918-150937 Msa1369210:intron 30.0%
! TTTAGAGTACTCTTGCATTA+CGG + tig0018755:151052-151071 None:intergenic 30.0%
!! TATTTTTGATTGTGTGAGAC+AGG - tig0018755:151239-151258 Msa1369210:intron 30.0%
! GATGAGGATATTGATGATAA+TGG - tig0018755:151330-151349 Msa1369210:CDS 30.0%
! TGGGTTTTACTTTGATCCAA+CGG - tig0018755:147217-147236 Msa1369210:CDS 35.0%
CCTTGGAATAGAGAAAATGA+AGG + tig0018755:147256-147275 None:intergenic 35.0%
! CCTTCATTTTCTCTATTCCA+AGG - tig0018755:147253-147272 Msa1369210:CDS 35.0%
ATGATATGGTAAAGAAGCCT+TGG + tig0018755:147273-147292 None:intergenic 35.0%
CATGATCCTTGGGAAATATA+CGG - tig0018755:147326-147345 Msa1369210:CDS 35.0%
ACGGTATGTCTTATAGTACT+AGG - tig0018755:147345-147364 Msa1369210:CDS 35.0%
!! TGAGAGTATCCCAATTTAGA+TGG + tig0018755:147599-147618 None:intergenic 35.0%
AAGGCATGTATATTTCTTGG+GGG + tig0018755:147925-147944 None:intergenic 35.0%
! GCTTCTATTTTCCTTCACTT+CGG + tig0018755:147996-148015 None:intergenic 35.0%
!! GAAGCACTGAAAATGGATAT+TGG - tig0018755:148011-148030 Msa1369210:intron 35.0%
CACTGAAAATGGATATTGGA+AGG - tig0018755:148015-148034 Msa1369210:intron 35.0%
TGGATATTGGAAGGAAATTG+GGG - tig0018755:148024-148043 Msa1369210:intron 35.0%
AAGTACCTTGTATTCAACCT+TGG - tig0018755:148079-148098 Msa1369210:intron 35.0%
AGTACCTTGTATTCAACCTT+GGG - tig0018755:148080-148099 Msa1369210:intron 35.0%
GGAAGGAATTGAAACAAGTT+GGG - tig0018755:148102-148121 Msa1369210:intron 35.0%
TAGTAACATTCAACAGCTTC+TGG + tig0018755:148644-148663 None:intergenic 35.0%
AATGTGTGTATATATTCGCG+AGG + tig0018755:148979-148998 None:intergenic 35.0%
GCGTAACAAAAAAAGACAGA+CGG + tig0018755:149026-149045 None:intergenic 35.0%
! CTCTGGAAGATTACATTGAA+AGG + tig0018755:149264-149283 None:intergenic 35.0%
CCAAATATTTGTGATGCATG+GGG + tig0018755:149662-149681 None:intergenic 35.0%
ATTTAGTATCCAGTCCTTTC+AGG + tig0018755:149934-149953 None:intergenic 35.0%
CTTCACATGATCTACAACAA+AGG + tig0018755:149972-149991 None:intergenic 35.0%
! CTTTGTTGTAGATCATGTGA+AGG - tig0018755:149821-149840 Msa1369210:intron 35.0%
TGTGAAGGGATTTATATACG+TGG - tig0018755:149985-150004 Msa1369210:intron 35.0%
AGTTAATATCTGCCTTTGCT+AGG - tig0018755:150019-150038 Msa1369210:intron 35.0%
GTTAATATCTGCCTTTGCTA+GGG - tig0018755:150020-150039 Msa1369210:intron 35.0%
TTAATATCTGCCTTTGCTAG+GGG - tig0018755:150021-150040 Msa1369210:intron 35.0%
TGATGTGAATGAAGTGGAAA+CGG + tig0018755:150374-150393 None:intergenic 35.0%
TGGGTATCATATTTATCCGA+CGG - tig0018755:150626-150645 Msa1369210:CDS 35.0%
TGATCTACAGCAAATGTCAA+TGG + tig0018755:150691-150710 None:intergenic 35.0%
!! AATCAGGTAGCTTTGGTAAT+AGG - tig0018755:150907-150926 Msa1369210:intron 35.0%
!! ATCAGGTAGCTTTGGTAATA+GGG - tig0018755:150908-150927 Msa1369210:intron 35.0%
GGGTTTGTAACTAGTTAATG+TGG - tig0018755:151168-151187 Msa1369210:intron 35.0%
GAAAAGAAGATGTCACATCA+AGG - tig0018755:151300-151319 Msa1369210:CDS 35.0%
! ATAATGGAACAGATGTGTCA+TGG - tig0018755:151346-151365 Msa1369210:CDS 35.0%
GTTGGATCAAAGTAAAACCC+AGG + tig0018755:147218-147237 None:intergenic 40.0%
GGTATGATGCTAGGATGATA+TGG + tig0018755:147287-147306 None:intergenic 40.0%
TGAAGTTCAGGTATGATGCT+AGG + tig0018755:147296-147315 None:intergenic 40.0%
CGTATATTTCCCAAGGATCA+TGG + tig0018755:147328-147347 None:intergenic 40.0%
GACATACCGTATATTTCCCA+AGG + tig0018755:147335-147354 None:intergenic 40.0%
!! TAAGTGATGGATGGTGAGAT+TGG + tig0018755:147756-147775 None:intergenic 40.0%
!! ACAGGTAAAGCATTGTCAAG+TGG - tig0018755:147950-147969 Msa1369210:intron 40.0%
!!! CTACTTTTTCACCGAAGTGA+AGG - tig0018755:147982-148001 Msa1369210:intron 40.0%
GTACCTTGTATTCAACCTTG+GGG - tig0018755:148081-148100 Msa1369210:intron 40.0%
TTGTTTCAATTCCTTCCCCA+AGG + tig0018755:148099-148118 None:intergenic 40.0%
GGGAAGGAATTGAAACAAGT+TGG - tig0018755:148101-148120 Msa1369210:intron 40.0%
GGGCAAAATGGTAAATTCGA+TGG + tig0018755:148270-148289 None:intergenic 40.0%
! GAATTTACCATTTTGCCCCT+AGG - tig0018755:148272-148291 Msa1369210:intron 40.0%
TAGAAGCAACTGAATTTGGG+AGG + tig0018755:148463-148482 None:intergenic 40.0%
GATTCCTTAATCTCCCACAA+CGG + tig0018755:148491-148510 None:intergenic 40.0%
AACTCTTTAGCGTCTTGTGT+AGG + tig0018755:149399-149418 None:intergenic 40.0%
CCCCATGCATCACAAATATT+TGG - tig0018755:149659-149678 Msa1369210:intron 40.0%
! CAGAAGTTTGTTCACCTGAA+AGG - tig0018755:149917-149936 Msa1369210:intron 40.0%
TTGGATTGTATCCATACCCA+CGG - tig0018755:150179-150198 Msa1369210:intron 40.0%
!!! ATTGAGGATTTTTAGGTGGG+CGG + tig0018755:150302-150321 None:intergenic 40.0%
GGGTATCATATTTATCCGAC+GGG - tig0018755:150627-150646 Msa1369210:CDS 40.0%
GGTATCATATTTATCCGACG+GGG - tig0018755:150628-150647 Msa1369210:CDS 40.0%
TCAATGGATACCCATGGATA+CGG + tig0018755:150675-150694 None:intergenic 40.0%
CAAATGTCAATGGATACCCA+TGG + tig0018755:150681-150700 None:intergenic 40.0%
GTTTGTTCACCTGAAAGAAC+TGG - tig0018755:150798-150817 Msa1369210:intron 40.0%
GTGTGAGACAGGATCATAAT+TGG - tig0018755:151250-151269 Msa1369210:intron 40.0%
AGGATCATAATTGGAGCAGA+TGG - tig0018755:151259-151278 Msa1369210:intron 40.0%
GGATCATAATTGGAGCAGAT+GGG - tig0018755:151260-151279 Msa1369210:intron 40.0%
GGATCAAAGTAAAACCCAGG+AGG + tig0018755:147215-147234 None:intergenic 45.0%
!! AGGACTAGTTCTTCATCCGT+TGG + tig0018755:147236-147255 None:intergenic 45.0%
TGGTGAGACAAGTGAAGTTC+AGG + tig0018755:147308-147327 None:intergenic 45.0%
ACTTGTCTCACCATGATCCT+TGG - tig0018755:147315-147334 Msa1369210:CDS 45.0%
CTTGTCTCACCATGATCCTT+GGG - tig0018755:147316-147335 Msa1369210:CDS 45.0%
CTTCCCCAAGGTTGAATACA+AGG + tig0018755:148087-148106 None:intergenic 45.0%
CTTGTATTCAACCTTGGGGA+AGG - tig0018755:148085-148104 Msa1369210:intron 45.0%
ACAATCACTTACCGGAGATG+AGG + tig0018755:148149-148168 None:intergenic 45.0%
! TTTACCATTTTGCCCCTAGG+AGG - tig0018755:148275-148294 Msa1369210:intron 45.0%
! TTACCATTTTGCCCCTAGGA+GGG - tig0018755:148276-148295 Msa1369210:intron 45.0%
TTACCAAAATGCCCCTCCTA+GGG + tig0018755:148291-148310 None:intergenic 45.0%
TTTACCAAAATGCCCCTCCT+AGG + tig0018755:148292-148311 None:intergenic 45.0%
TTGCTTCTACATTGCCGTTG+TGG - tig0018755:148474-148493 Msa1369210:intron 45.0%
TGCTTCTACATTGCCGTTGT+GGG - tig0018755:148475-148494 Msa1369210:intron 45.0%
ATTGCCGTTGTGGGAGATTA+AGG - tig0018755:148484-148503 Msa1369210:intron 45.0%
! ACCTCTTTTCAACTCACGCT+GGG - tig0018755:148697-148716 Msa1369210:intron 45.0%
GTTTGTTCACCTGAAAGGAC+TGG - tig0018755:149922-149941 Msa1369210:intron 45.0%
! ATTTTTGCCACCCCTAGCAA+AGG + tig0018755:150034-150053 None:intergenic 45.0%
GCAAAAATACCCATGCCCAT+GGG - tig0018755:150046-150065 Msa1369210:intron 45.0%
ATATGGACACAGACACGGAT+TGG - tig0018755:150160-150179 Msa1369210:intron 45.0%
TGGATTGTATCCATACCCAC+GGG - tig0018755:150180-150199 Msa1369210:intron 45.0%
!! GTGGGTATTGAGGTATCCAT+GGG + tig0018755:150563-150582 None:intergenic 45.0%
CATGGATACCTCAATACCCA+CGG - tig0018755:150562-150581 Msa1369210:CDS 45.0%
ATGGATACCTCAATACCCAC+GGG - tig0018755:150563-150582 Msa1369210:CDS 45.0%
ATCATATTTATCCGACGGGG+CGG - tig0018755:150631-150650 Msa1369210:CDS 45.0%
!! ATAATTTAAAAAATTGATTA+GGG + tig0018755:148367-148386 None:intergenic 5.0%
!! AATAATTTAAAAAATTGATT+AGG + tig0018755:148368-148387 None:intergenic 5.0%
!! AATATTAAAAAATAAAGAAA+AGG + tig0018755:148725-148744 None:intergenic 5.0%
!! TTAAAAAAAATAAAGTTAAA+TGG + tig0018755:148772-148791 None:intergenic 5.0%
!!! GTTTTTAAAAATATAAAAAT+TGG + tig0018755:149117-149136 None:intergenic 5.0%
!!! TTTTAAAAAACTTATTTTAA+AGG + tig0018755:149748-149767 None:intergenic 5.0%
!! TAATTTACTTAATTTATTAT+CGG + tig0018755:150215-150234 None:intergenic 5.0%
!!! TTTTGAATTTATTTATTTTT+TGG + tig0018755:150529-150548 None:intergenic 5.0%
! ATGGATGGTGAGATTGGTCC+GGG + tig0018755:147750-147769 None:intergenic 50.0%
! GATGGATGGTGAGATTGGTC+CGG + tig0018755:147751-147770 None:intergenic 50.0%
! TACCATTTTGCCCCTAGGAG+GGG - tig0018755:148277-148296 Msa1369210:intron 50.0%
TACCAAAATGCCCCTCCTAG+GGG + tig0018755:148290-148309 None:intergenic 50.0%
! CACCTCTTTTCAACTCACGC+TGG - tig0018755:148696-148715 Msa1369210:intron 50.0%
! TCCCAGCGTGAGTTGAAAAG+AGG + tig0018755:148701-148720 None:intergenic 50.0%
ATATCTGCCTTTGCTAGGGG+TGG - tig0018755:150024-150043 Msa1369210:intron 50.0%
GGCAAAAATACCCATGCCCA+TGG - tig0018755:150045-150064 Msa1369210:intron 50.0%
! TTTTACCCACGGGTACCCAT+GGG + tig0018755:150064-150083 None:intergenic 50.0%
! ATTTTACCCACGGGTACCCA+TGG + tig0018755:150065-150084 None:intergenic 50.0%
GGTAAAATCCGTCACGGGTA+TGG - tig0018755:150077-150096 Msa1369210:intron 50.0%
GTATGGAGCGGGTAGCTAAA+CGG - tig0018755:150094-150113 Msa1369210:intron 50.0%
TATGGAGCGGGTAGCTAAAC+GGG - tig0018755:150095-150114 Msa1369210:intron 50.0%
GGTAGCTAAACGGGTATCCA+CGG - tig0018755:150104-150123 Msa1369210:intron 50.0%
GTAGCTAAACGGGTATCCAC+GGG - tig0018755:150105-150124 Msa1369210:intron 50.0%
CAAAACTCCATGGGTACCCA+TGG - tig0018755:150544-150563 Msa1369210:CDS 50.0%
!! CGTGGGTATTGAGGTATCCA+TGG + tig0018755:150564-150583 None:intergenic 50.0%
TCATATTTATCCGACGGGGC+GGG - tig0018755:150632-150651 Msa1369210:CDS 50.0%
TTACAAACCCGTGCTTCGCA+CGG + tig0018755:151158-151177 None:intergenic 50.0%
ACATCAAGGTGCAAGCGATG+AGG - tig0018755:151314-151333 Msa1369210:CDS 50.0%
!!! CCGTGACGGATTTTACCCAC+GGG + tig0018755:150074-150093 None:intergenic 55.0%
CCCGTGGGTAAAATCCGTCA+CGG - tig0018755:150071-150090 Msa1369210:intron 55.0%
!!! CCCGTGACGGATTTTACCCA+CGG + tig0018755:150075-150094 None:intergenic 55.0%
CCGTGGGTAAAATCCGTCAC+GGG - tig0018755:150072-150091 Msa1369210:intron 55.0%
AATCCGTCACGGGTATGGAG+CGG - tig0018755:150082-150101 Msa1369210:intron 55.0%
TATCGGGTATGGGTACCCGT+GGG + tig0018755:150198-150217 None:intergenic 55.0%
TTATCGGGTATGGGTACCCG+TGG + tig0018755:150199-150218 None:intergenic 55.0%
! GAGGTATCCATGGGTACCCA+TGG + tig0018755:150554-150573 None:intergenic 55.0%
! ACTGGTACCCGTGGGTATTG+AGG + tig0018755:150573-150592 None:intergenic 55.0%
ACCCACGGGTACCAGTATAG+TGG - tig0018755:150577-150596 Msa1369210:CDS 55.0%
CCCACTATACTGGTACCCGT+GGG + tig0018755:150581-150600 None:intergenic 55.0%
CCCACGGGTACCAGTATAGT+GGG - tig0018755:150578-150597 Msa1369210:CDS 55.0%
ACCCACTATACTGGTACCCG+TGG + tig0018755:150582-150601 None:intergenic 55.0%
CTCGTGGGTACCCACTATAC+TGG + tig0018755:150591-150610 None:intergenic 55.0%
!! CAGTATAGTGGGTACCCACG+AGG - tig0018755:150589-150608 Msa1369210:CDS 55.0%
AGTGGGTACCCACGAGGATA+CGG - tig0018755:150595-150614 Msa1369210:CDS 55.0%
CATATTTATCCGACGGGGCG+GGG - tig0018755:150633-150652 Msa1369210:CDS 55.0%
TACAAACCCGTGCTTCGCAC+GGG + tig0018755:151157-151176 None:intergenic 55.0%
AGCAGCGTGAAGCTTCCTCC+TGG - tig0018755:147197-147216 Msa1369210:exon 60.0%
GCAGCGTGAAGCTTCCTCCT+GGG - tig0018755:147198-147217 Msa1369210:exon 60.0%
TGCCCCTCCTAGGGGCAAAA+TGG + tig0018755:148282-148301 None:intergenic 60.0%
!!! TGCCCCTAGGAGGGGCATTT+TGG - tig0018755:148285-148304 Msa1369210:intron 60.0%
ATCCGTCACGGGTATGGAGC+GGG - tig0018755:150083-150102 Msa1369210:intron 60.0%
TACCCGCTCCATACCCGTGA+CGG + tig0018755:150088-150107 None:intergenic 60.0%
GGTATGGGTACCCGTGGGTA+TGG + tig0018755:150193-150212 None:intergenic 60.0%
GTGGGTACCCACGAGGATAC+GGG - tig0018755:150596-150615 Msa1369210:CDS 60.0%
TGGGTACCCACGAGGATACG+GGG - tig0018755:150597-150616 Msa1369210:CDS 60.0%
ACAAACCCGTGCTTCGCACG+GGG + tig0018755:151156-151175 None:intergenic 60.0%
CCACGGGTACCCATGGGCAT+GGG + tig0018755:150058-150077 None:intergenic 65.0%
CCATGCCCATGGGTACCCGT+GGG - tig0018755:150056-150075 Msa1369210:intron 65.0%
GTACCCACGAGGATACGGGG+CGG - tig0018755:150600-150619 Msa1369210:CDS 65.0%
TACCCACGAGGATACGGGGC+GGG - tig0018755:150601-150620 Msa1369210:CDS 65.0%
GATACATGTCCCCGCCCCGT+CGG + tig0018755:150645-150664 None:intergenic 65.0%
CTGAACCCCCGTGCGAAGCA+CGG - tig0018755:151147-151166 Msa1369210:intron 65.0%
TGAACCCCCGTGCGAAGCAC+GGG - tig0018755:151148-151167 Msa1369210:intron 65.0%
CAAACCCGTGCTTCGCACGG+GGG + tig0018755:151155-151174 None:intergenic 65.0%
CCCATGCCCATGGGTACCCG+TGG - tig0018755:150055-150074 Msa1369210:intron 70.0%
CCCACGGGTACCCATGGGCA+TGG + tig0018755:150059-150078 None:intergenic 70.0%
TGCCCGCCCCGTATCCTCGT+GGG + tig0018755:150606-150625 None:intergenic 70.0%
ATGCCCGCCCCGTATCCTCG+TGG + tig0018755:150607-150626 None:intergenic 70.0%
ACGAGGATACGGGGCGGGCA+TGG - tig0018755:150606-150625 Msa1369210:CDS 70.0%
CGAGGATACGGGGCGGGCAT+GGG - tig0018755:150607-150626 Msa1369210:CDS 70.0%
Chromosome Type Strat End Strand Name
tig0018755 gene 147182 151446 147182 ID=Msa1369210;Name=Msa1369210
tig0018755 mRNA 147182 151446 147182 ID=Msa1369210-mRNA-1;Parent=Msa1369210;Name=Msa1369210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0.66|1|1|1|3|18|178
tig0018755 exon 147182 147367 147182 ID=Msa1369210-mRNA-1:exon:1020;Parent=Msa1369210-mRNA-1
tig0018755 exon 150472 150674 150472 ID=Msa1369210-mRNA-1:exon:1019;Parent=Msa1369210-mRNA-1
tig0018755 exon 151281 151446 151281 ID=Msa1369210-mRNA-1:exon:1018;Parent=Msa1369210-mRNA-1
tig0018755 CDS 151281 151446 151281 ID=Msa1369210-mRNA-1:cds;Parent=Msa1369210-mRNA-1
tig0018755 CDS 150472 150674 150472 ID=Msa1369210-mRNA-1:cds;Parent=Msa1369210-mRNA-1
tig0018755 CDS 147200 147367 147200 ID=Msa1369210-mRNA-1:cds;Parent=Msa1369210-mRNA-1
tig0018755 three_prime_UTR 147182 147199 147182 ID=Msa1369210-mRNA-1:three_prime_utr;Parent=Msa1369210-mRNA-1
Gene Sequence

>Msa1369210

ATGATGGGGAGTGAAAGCAGCGTGAAGCTTCCTCCTGGGTTTTACTTTGATCCAACGGATGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAGCATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTAAAGCATTGTCAAGTGGAAATGATCACTACTTTTTCACCGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAAATTGGGAATGAAGAAGTACCTTGTATTCAACCTTGGGGAAGGAATTGAAACAAGTTGGGTAATGGAAGAATATCATATTTCCTCATCTCCGGATCATAATTGGAGCAGATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACATCAAGGTGCAAGCGATGAGGATATTGATGATAATGGAACAGATGTGTCATGGCTAGATGAAGTGTTTATGTCTTTAGATGATGATCTTGATCAAACAAGCCTACCTAATTAG
Protein sequence

>Msa1369210

MMGSESSVKLPPGFYFDPTDEELVLHFLYSKASLPYHPSIIPELHLSHHDPWEIYGKALSSGNDHYFFTEVKENRSTENGYWKEIGVTKPINKLGMKKYLVFNLGEGIETSWVMEEYHISSSPDHNWSRWVLCKVYEKKMSHQGASDEDIDDNGTDVSWLDEVFMSLDDDLDQTSLPN*