AlfalfaGEDB | Msa1369210

M. sativa cultivar zhongmu-4 / Msa1369210

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007568 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009835 GO:0009889 GO:0009908 GO:0009987 GO:0010150 GO:0010154 GO:0010468 GO:0010556 GO:0016049 GO:0019219 GO:0019222 GO:0021700 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0071695 GO:0080090 GO:0090567 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02365.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369210	XP_003630281.1	91.892	185	8	3	1	178	1	185	1.44e-115	335

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369210	sp\|Q8GWK6\|NC104_ARATH	46.465	198	67	7	8	177	1	187	5.08e-49	160

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369210	G7LE35	91.892	185	8	3	1	178	1	185	6.87e-116	335

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TFs/TRs:

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Gene ID	Type	Classification
Msa1369210	TF	NAC

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0632030	Msa1369210	0.982700	9.007539e-156	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369210	MtrunA17_Chr8g0384351	91.892	185	8	3	1	178	1	185	1.32e-119	335
Msa1369210	MtrunA17_Chr3g0130321	51.707	205	66	9	7	178	4	208	1.39e-57	179
Msa1369210	MtrunA17_Chr4g0050701	46.032	189	74	6	10	178	11	191	9.00e-49	156
Msa1369210	MtrunA17_Chr4g0042561	38.021	192	92	7	2	169	1	189	4.16e-31	113
Msa1369210	MtrunA17_Chr2g0318101	37.017	181	81	5	10	157	15	195	2.74e-30	113
Msa1369210	MtrunA17_Chr8g0384721	42.405	158	68	6	5	139	2	159	2.96e-29	108
Msa1369210	MtrunA17_Chr5g0417791	37.222	180	88	6	8	162	1	180	4.39e-29	108
Msa1369210	MtrunA17_Chr7g0214071	40.244	164	73	7	8	150	13	172	1.80e-28	106
Msa1369210	MtrunA17_Chr3g0124761	36.872	179	91	6	6	162	3	181	1.98e-27	104
Msa1369210	MtrunA17_Chr2g0326361	36.257	171	83	5	3	147	7	177	9.43e-27	103

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1369210	AT5G64530.1	46.465	198	67	7	8	177	1	187	5.17e-50	160
Msa1369210	AT5G64530.2	51.261	119	50	3	8	119	1	118	4.45e-36	123
Msa1369210	AT1G61110.1	41.317	167	65	6	10	143	16	182	2.44e-29	110
Msa1369210	AT1G77450.1	41.615	161	72	6	1	139	1	161	7.73e-29	107
Msa1369210	AT2G33480.2	41.026	156	71	6	8	145	13	165	2.05e-28	106
Msa1369210	AT2G33480.1	41.139	158	70	7	8	145	13	167	2.81e-28	106
Msa1369210	AT1G69490.1	37.234	188	86	7	2	165	1	180	1.40e-27	104
Msa1369210	AT1G01720.1	42.581	155	66	6	8	139	5	159	2.85e-27	104
Msa1369210	AT5G39610.1	38.509	161	77	5	1	139	11	171	2.71e-26	101
Msa1369210	AT3G04070.2	37.363	182	80	8	1	150	1	180	5.31e-26	102

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Find 45 sgRNAs with CRISPR-Local

Find 284 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTAATTATTAACTAATT+AGG	0.204594	tig0018755:+147186	None:intergenic
AAGTACCTTGTATTCAACCT+TGG	0.541631	tig0018755:-150527	Msa1369210:CDS
AATGGATATTGGAAGGAAAT+TGG	0.199332	tig0018755:-150584	Msa1369210:CDS
AATTGAAACAAGTTGGGTAA+TGG	0.457936	tig0018755:-150498	Msa1369210:CDS
ACAAAACCTATAAATAAATT+GGG	0.452946	tig0018755:-150557	Msa1369210:CDS
ACAATCACTTACCGGAGATG+AGG	0.598757	tig0018755:+150460	None:intergenic
ACAGGTAAAGCATTGTCAAG+TGG	0.622513	tig0018755:-150656	Msa1369210:intron
ACATCAAGGTGCAAGCGATG+AGG	0.654589	tig0018755:-147292	Msa1369210:CDS
ACTTGTCTCACCATGATCCT+TGG	0.405810	tig0018755:-151291	Msa1369210:CDS
AGCAGCGTGAAGCTTCCTCC+TGG	0.455992	tig0018755:-151409	Msa1369210:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATTGATCAAGTGACATATAC+TGG	-	tig0018755:147402-147421	Msa1369210:intron	30.0%
ATTCAATGATCGATTAATCC+CGG	-	tig0018755:147729-147748	Msa1369210:intron	30.0%
AATCGTACTCTTTATAGTTG+TGG	-	tig0018755:147884-147903	Msa1369210:intron	30.0%
ATATACATGCCTTTGTAAAC+AGG	-	tig0018755:147932-147951	Msa1369210:intron	30.0%
AATGCTTTACCTGTTTACAA+AGG	+	tig0018755:147944-147963	None:intergenic	30.0%
AATGGATATTGGAAGGAAAT+TGG	-	tig0018755:148022-148041	Msa1369210:intron	30.0%
ATGGATATTGGAAGGAAATT+GGG	-	tig0018755:148023-148042	Msa1369210:intron	30.0%
ATATCATATTTCCTCATCTC+CGG	-	tig0018755:148135-148154	Msa1369210:intron	30.0%
AACAAAACACAATCACTTAC+CGG	+	tig0018755:148157-148176	None:intergenic	30.0%
AAATTGATTAGGGGCAAAAA+TGG	+	tig0018755:148357-148376	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0018755	gene	147182	151446	147182	ID=Msa1369210;Name=Msa1369210
tig0018755	mRNA	147182	151446	147182	ID=Msa1369210-mRNA-1;Parent=Msa1369210;Name=Msa1369210-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|1\|0.66\|1\|1\|1\|3\|18\|178
tig0018755	exon	147182	147367	147182	ID=Msa1369210-mRNA-1:exon:1020;Parent=Msa1369210-mRNA-1
tig0018755	exon	150472	150674	150472	ID=Msa1369210-mRNA-1:exon:1019;Parent=Msa1369210-mRNA-1
tig0018755	exon	151281	151446	151281	ID=Msa1369210-mRNA-1:exon:1018;Parent=Msa1369210-mRNA-1
tig0018755	CDS	151281	151446	151281	ID=Msa1369210-mRNA-1:cds;Parent=Msa1369210-mRNA-1
tig0018755	CDS	150472	150674	150472	ID=Msa1369210-mRNA-1:cds;Parent=Msa1369210-mRNA-1
tig0018755	CDS	147200	147367	147200	ID=Msa1369210-mRNA-1:cds;Parent=Msa1369210-mRNA-1
tig0018755	three_prime_UTR	147182	147199	147182	ID=Msa1369210-mRNA-1:three_prime_utr;Parent=Msa1369210-mRNA-1

Gene Sequence

>Msa1369210

ATGATGGGGAGTGAAAGCAGCGTGAAGCTTCCTCCTGGGTTTTACTTTGATCCAACGGATGAAGAACTAGTCCTTCATTTTCTCTATTCCAAGGCTTCTTTACCATATCATCCTAGCATCATACCTGAACTTCACTTGTCTCACCATGATCCTTGGGAAATATACGGTAAAGCATTGTCAAGTGGAAATGATCACTACTTTTTCACCGAAGTGAAGGAAAATAGAAGCACTGAAAATGGATATTGGAAGGAAATTGGGGTCACAAAACCTATAAATAAATTGGGAATGAAGAAGTACCTTGTATTCAACCTTGGGGAAGGAATTGAAACAAGTTGGGTAATGGAAGAATATCATATTTCCTCATCTCCGGATCATAATTGGAGCAGATGGGTTTTATGCAAAGTTTATGAAAAGAAGATGTCACATCAAGGTGCAAGCGATGAGGATATTGATGATAATGGAACAGATGTGTCATGGCTAGATGAAGTGTTTATGTCTTTAGATGATGATCTTGATCAAACAAGCCTACCTAATTAG

Protein sequence

>Msa1369210

MMGSESSVKLPPGFYFDPTDEELVLHFLYSKASLPYHPSIIPELHLSHHDPWEIYGKALSSGNDHYFFTEVKENRSTENGYWKEIGVTKPINKLGMKKYLVFNLGEGIETSWVMEEYHISSSPDHNWSRWVLCKVYEKKMSHQGASDEDIDDNGTDVSWLDEVFMSLDDDLDQTSLPN*