Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634020 | RHN59041.1 | 46.939 | 147 | 23 | 4 | 1 | 92 | 10 | 156 | 6.54e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0537500 | Msa0634020 | 0.899411 | 2.035529e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634020 | MtrunA17_Chr4g0008981 | 46.939 | 147 | 23 | 4 | 1 | 92 | 10 | 156 | 6.02e-32 | 108 |
| Msa0634020 | MtrunA17_Chr4g0009241 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1446 | 1504 | 6.88e-24 | 94.0 |
| Msa0634020 | MtrunA17_Chr4g0009141 | 71.930 | 57 | 16 | 0 | 1 | 57 | 1442 | 1498 | 8.97e-23 | 90.9 |
| Msa0634020 | MtrunA17_Chr4g0009171 | 69.091 | 55 | 17 | 0 | 1 | 55 | 1647 | 1701 | 1.11e-20 | 84.7 |
| Msa0634020 | MtrunA17_Chr4g0009401 | 67.273 | 55 | 18 | 0 | 1 | 55 | 1424 | 1478 | 2.87e-20 | 83.6 |
| Msa0634020 | MtrunA17_Chr4g0009011 | 63.158 | 57 | 21 | 0 | 1 | 57 | 210 | 266 | 2.79e-19 | 80.1 |
| Msa0634020 | MtrunA17_Chr4g0009211 | 64.912 | 57 | 20 | 0 | 1 | 57 | 10 | 66 | 3.84e-19 | 76.3 |
| Msa0634020 | MtrunA17_Chr4g0009041 | 67.273 | 55 | 18 | 0 | 1 | 55 | 1430 | 1484 | 6.46e-19 | 79.7 |
| Msa0634020 | MtrunA17_Chr4g0009361 | 70.370 | 54 | 16 | 0 | 2 | 55 | 439 | 492 | 1.43e-18 | 78.6 |
| Msa0634020 | MtrunA17_Chr4g0009101 | 63.158 | 57 | 21 | 0 | 1 | 57 | 1458 | 1514 | 2.63e-18 | 78.2 |
| Msa0634020 | MtrunA17_Chr4g0009301 | 63.636 | 55 | 20 | 0 | 1 | 55 | 1462 | 1516 | 1.37e-17 | 75.9 |
| Msa0634020 | MtrunA17_Chr4g0005871 | 48.276 | 58 | 30 | 0 | 1 | 58 | 1055 | 1112 | 1.13e-14 | 67.8 |
| Msa0634020 | MtrunA17_Chr5g0414761 | 55.556 | 54 | 24 | 0 | 6 | 59 | 712 | 765 | 4.67e-14 | 65.9 |
| Msa0634020 | MtrunA17_Chr3g0085531 | 48.276 | 58 | 30 | 0 | 2 | 59 | 120 | 177 | 4.97e-14 | 65.5 |
| Msa0634020 | MtrunA17_Chr4g0005591 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1007 | 1064 | 1.62e-13 | 64.3 |
| Msa0634020 | MtrunA17_Chr4g0005891 | 46.552 | 58 | 31 | 0 | 1 | 58 | 979 | 1036 | 1.91e-13 | 64.3 |
| Msa0634020 | MtrunA17_Chr3g0085731 | 52.830 | 53 | 25 | 0 | 2 | 54 | 930 | 982 | 2.54e-13 | 63.9 |
| Msa0634020 | MtrunA17_Chr8g0352211 | 52.830 | 53 | 25 | 0 | 2 | 54 | 852 | 904 | 2.82e-13 | 63.5 |
| Msa0634020 | MtrunA17_Chr4g0005851 | 44.828 | 58 | 32 | 0 | 1 | 58 | 965 | 1022 | 3.53e-13 | 63.5 |
| Msa0634020 | MtrunA17_Chr8g0370511 | 50.000 | 58 | 29 | 0 | 2 | 59 | 922 | 979 | 3.57e-13 | 63.5 |
| Msa0634020 | MtrunA17_Chr8g0339011 | 50.000 | 54 | 27 | 0 | 6 | 59 | 921 | 974 | 4.21e-13 | 63.2 |
| Msa0634020 | MtrunA17_Chr8g0338981 | 51.852 | 54 | 26 | 0 | 6 | 59 | 925 | 978 | 5.82e-13 | 62.8 |
| Msa0634020 | MtrunA17_Chr8g0338881 | 55.102 | 49 | 22 | 0 | 11 | 59 | 962 | 1010 | 7.16e-13 | 62.4 |
| Msa0634020 | MtrunA17_Chr8g0339021 | 48.276 | 58 | 30 | 0 | 2 | 59 | 912 | 969 | 3.01e-12 | 60.8 |
| Msa0634020 | MtrunA17_Chr7g0223531 | 51.724 | 58 | 28 | 0 | 2 | 59 | 938 | 995 | 4.63e-12 | 60.1 |
| Msa0634020 | MtrunA17_Chr8g0352221 | 50.000 | 54 | 27 | 0 | 1 | 54 | 838 | 891 | 6.08e-12 | 59.7 |
| Msa0634020 | MtrunA17_Chr8g0339031 | 51.852 | 54 | 26 | 0 | 6 | 59 | 933 | 986 | 7.61e-12 | 59.7 |
| Msa0634020 | MtrunA17_Chr8g0343781 | 42.373 | 59 | 34 | 0 | 1 | 59 | 5 | 63 | 1.04e-11 | 55.5 |
| Msa0634020 | MtrunA17_Chr8g0338841 | 45.763 | 59 | 32 | 0 | 1 | 59 | 365 | 423 | 2.49e-11 | 58.2 |
| Msa0634020 | MtrunA17_Chr5g0420331 | 44.828 | 58 | 32 | 0 | 2 | 59 | 923 | 980 | 4.14e-11 | 57.4 |
| Msa0634020 | MtrunA17_Chr3g0114381 | 48.148 | 54 | 28 | 0 | 1 | 54 | 156 | 209 | 4.24e-11 | 57.0 |
| Msa0634020 | MtrunA17_Chr5g0420341 | 46.552 | 58 | 31 | 0 | 2 | 59 | 923 | 980 | 5.50e-11 | 57.0 |
| Msa0634020 | MtrunA17_Chr2g0296451 | 57.778 | 45 | 19 | 0 | 15 | 59 | 454 | 498 | 7.56e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATACACTAACCACTTT+TGG | 0.342795 | 4_3:-20659669 | Msa0634020:CDS |
| CCAGCGGAGAATAATGTTAC+TGG | 0.394181 | 4_3:-20658840 | Msa0634020:intron |
| ATAACATCAAATCTAGAATC+TGG | 0.419478 | 4_3:-20659627 | Msa0634020:intron |
| CCTTCTGATATTATGTTGTC+CGG | 0.472049 | 4_3:+20659747 | None:intergenic |
| GAGACATGACAGAACTGTAA+TGG | 0.485935 | 4_3:-20658746 | None:intergenic |
| CCAATCCTCATGGCCAAAAG+TGG | 0.541687 | 4_3:+20659656 | None:intergenic |
| GTTGTCCGGTGAAAAGTGAT+AGG | 0.552940 | 4_3:+20659761 | None:intergenic |
| TTATGCTCTGCCAATCCTCA+TGG | 0.558391 | 4_3:+20659646 | None:intergenic |
| CCGGACAACATAATATCAGA+AGG | 0.632034 | 4_3:-20659747 | Msa0634020:CDS |
| GTCCGGTGAAAAGTGATAGG+CGG | 0.732482 | 4_3:+20659764 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGACATAGAATTATTATA+AGG | - | chr4_3:20659071-20659090 | Msa0634020:intron | 15.0% |
| !!! | TTCAATTTACCATTTTAAAT+AGG | + | chr4_3:20659459-20659478 | None:intergenic | 15.0% |
| !!! | CTCTATTATTTCAATATTTT+CGG | + | chr4_3:20659483-20659502 | None:intergenic | 15.0% |
| !! | TATGACATAGAATTATTATA+AGG | - | chr4_3:20659071-20659090 | Msa0634020:intron | 15.0% |
| !!! | TTCAATTTACCATTTTAAAT+AGG | + | chr4_3:20659459-20659478 | None:intergenic | 15.0% |
| !!! | CTCTATTATTTCAATATTTT+CGG | + | chr4_3:20659483-20659502 | None:intergenic | 15.0% |
| !! | ATAACATCAAATCTAGAATC+TGG | - | chr4_3:20658896-20658915 | Msa0634020:intron | 25.0% |
| ! | AAGGGAACATAAGTTATATT+AGG | - | chr4_3:20659343-20659362 | Msa0634020:intron | 25.0% |
| ! | AAGAGAGAATATATACATAG+TGG | + | chr4_3:20659381-20659400 | None:intergenic | 25.0% |
| ! | TATAAAAAGGAGATATACGT+GGG | + | chr4_3:20659420-20659439 | None:intergenic | 25.0% |
| ! | TAATACGTGCATGTATAAAA+AGG | + | chr4_3:20659433-20659452 | None:intergenic | 25.0% |
| ! | GTATTAGCTCCTATTTAAAA+TGG | - | chr4_3:20659447-20659466 | Msa0634020:intron | 25.0% |
| ! | ATGTATAGAAAAAGAAAGAG+AGG | - | chr4_3:20659755-20659774 | Msa0634020:CDS | 25.0% |
| !! | ATAACATCAAATCTAGAATC+TGG | - | chr4_3:20658896-20658915 | Msa0634020:intron | 25.0% |
| ! | AAGGGAACATAAGTTATATT+AGG | - | chr4_3:20659343-20659362 | Msa0634020:intron | 25.0% |
| ! | AAGAGAGAATATATACATAG+TGG | + | chr4_3:20659381-20659400 | None:intergenic | 25.0% |
| ! | TATAAAAAGGAGATATACGT+GGG | + | chr4_3:20659420-20659439 | None:intergenic | 25.0% |
| ! | TAATACGTGCATGTATAAAA+AGG | + | chr4_3:20659433-20659452 | None:intergenic | 25.0% |
| ! | GTATTAGCTCCTATTTAAAA+TGG | - | chr4_3:20659447-20659466 | Msa0634020:intron | 25.0% |
| ! | ATGTATAGAAAAAGAAAGAG+AGG | - | chr4_3:20659755-20659774 | Msa0634020:CDS | 25.0% |
| !!! | TGGAAGTTATGGTTGTTTTT+GGG | - | chr4_3:20658927-20658946 | Msa0634020:intron | 30.0% |
| ! | AACTTATCGATTATTGACTG+AGG | - | chr4_3:20659163-20659182 | Msa0634020:intron | 30.0% |
| ! | AACAACTTTTAGATGCTCAA+GGG | - | chr4_3:20659325-20659344 | Msa0634020:intron | 30.0% |
| GAATATATACATAGTGGCTA+TGG | + | chr4_3:20659375-20659394 | None:intergenic | 30.0% | |
| GTATAAAAAGGAGATATACG+TGG | + | chr4_3:20659421-20659440 | None:intergenic | 30.0% | |
| TGGTCATGTAACTGAAAAAT+AGG | - | chr4_3:20659531-20659550 | Msa0634020:intron | 30.0% | |
| TCAAACAAAATTCCAACATC+TGG | - | chr4_3:20659641-20659660 | Msa0634020:CDS | 30.0% | |
| !!! | TGGAAGTTATGGTTGTTTTT+GGG | - | chr4_3:20658927-20658946 | Msa0634020:intron | 30.0% |
| ! | AACTTATCGATTATTGACTG+AGG | - | chr4_3:20659163-20659182 | Msa0634020:intron | 30.0% |
| ! | AACAACTTTTAGATGCTCAA+GGG | - | chr4_3:20659325-20659344 | Msa0634020:intron | 30.0% |
| GAATATATACATAGTGGCTA+TGG | + | chr4_3:20659375-20659394 | None:intergenic | 30.0% | |
| GTATAAAAAGGAGATATACG+TGG | + | chr4_3:20659421-20659440 | None:intergenic | 30.0% | |
| TGGTCATGTAACTGAAAAAT+AGG | - | chr4_3:20659531-20659550 | Msa0634020:intron | 30.0% | |
| TCAAACAAAATTCCAACATC+TGG | - | chr4_3:20659641-20659660 | Msa0634020:CDS | 30.0% | |
| CCTTCTGATATTATGTTGTC+CGG | + | chr4_3:20658779-20658798 | None:intergenic | 35.0% | |
| ! | ATCTCTTTTATACGCGTGAA+TGG | + | chr4_3:20658840-20658859 | None:intergenic | 35.0% |
| ! | AGAGATACACTAACCACTTT+TGG | - | chr4_3:20658854-20658873 | Msa0634020:intron | 35.0% |
| ! | TCTAGAATCTGGTAACAAAG+TGG | - | chr4_3:20658907-20658926 | Msa0634020:intron | 35.0% |
| TGGTAACAAAGTGGAAGTTA+TGG | - | chr4_3:20658916-20658935 | Msa0634020:intron | 35.0% | |
| !! | GTGGAAGTTATGGTTGTTTT+TGG | - | chr4_3:20658926-20658945 | Msa0634020:intron | 35.0% |
| !!! | GGAAGTTATGGTTGTTTTTG+GGG | - | chr4_3:20658928-20658947 | Msa0634020:intron | 35.0% |
| TCAACCAACCAACAAAGAAA+TGG | - | chr4_3:20658994-20659013 | Msa0634020:intron | 35.0% | |
| TCTTCCATTTCTTTGTTGGT+TGG | + | chr4_3:20659001-20659020 | None:intergenic | 35.0% | |
| AAGGAAGTTGTTACTGTTTC+TGG | - | chr4_3:20659037-20659056 | Msa0634020:intron | 35.0% | |
| ! | GAACAACTTTTAGATGCTCA+AGG | - | chr4_3:20659324-20659343 | Msa0634020:intron | 35.0% |
| ! | AAAGCTCGTTTTGTCAAACT+TGG | - | chr4_3:20659505-20659524 | Msa0634020:intron | 35.0% |
| ! | CGTTTTGTCAAACTTGGAAT+TGG | - | chr4_3:20659511-20659530 | Msa0634020:intron | 35.0% |
| AACAAAATTCCAACATCTGG+TGG | - | chr4_3:20659644-20659663 | Msa0634020:CDS | 35.0% | |
| ACAAAATTCCAACATCTGGT+GGG | - | chr4_3:20659645-20659664 | Msa0634020:CDS | 35.0% | |
| GGATAATATTGATATGCCAG+CGG | - | chr4_3:20659667-20659686 | Msa0634020:CDS | 35.0% | |
| CCTTCTGATATTATGTTGTC+CGG | + | chr4_3:20658779-20658798 | None:intergenic | 35.0% | |
| ! | ATCTCTTTTATACGCGTGAA+TGG | + | chr4_3:20658840-20658859 | None:intergenic | 35.0% |
| ! | AGAGATACACTAACCACTTT+TGG | - | chr4_3:20658854-20658873 | Msa0634020:intron | 35.0% |
| ! | TCTAGAATCTGGTAACAAAG+TGG | - | chr4_3:20658907-20658926 | Msa0634020:intron | 35.0% |
| TGGTAACAAAGTGGAAGTTA+TGG | - | chr4_3:20658916-20658935 | Msa0634020:intron | 35.0% | |
| !! | GTGGAAGTTATGGTTGTTTT+TGG | - | chr4_3:20658926-20658945 | Msa0634020:intron | 35.0% |
| !!! | GGAAGTTATGGTTGTTTTTG+GGG | - | chr4_3:20658928-20658947 | Msa0634020:intron | 35.0% |
| TCAACCAACCAACAAAGAAA+TGG | - | chr4_3:20658994-20659013 | Msa0634020:intron | 35.0% | |
| TCTTCCATTTCTTTGTTGGT+TGG | + | chr4_3:20659001-20659020 | None:intergenic | 35.0% | |
| AAGGAAGTTGTTACTGTTTC+TGG | - | chr4_3:20659037-20659056 | Msa0634020:intron | 35.0% | |
| ! | GAACAACTTTTAGATGCTCA+AGG | - | chr4_3:20659324-20659343 | Msa0634020:intron | 35.0% |
| ! | AAAGCTCGTTTTGTCAAACT+TGG | - | chr4_3:20659505-20659524 | Msa0634020:intron | 35.0% |
| ! | CGTTTTGTCAAACTTGGAAT+TGG | - | chr4_3:20659511-20659530 | Msa0634020:intron | 35.0% |
| AACAAAATTCCAACATCTGG+TGG | - | chr4_3:20659644-20659663 | Msa0634020:CDS | 35.0% | |
| ACAAAATTCCAACATCTGGT+GGG | - | chr4_3:20659645-20659664 | Msa0634020:CDS | 35.0% | |
| GGATAATATTGATATGCCAG+CGG | - | chr4_3:20659667-20659686 | Msa0634020:CDS | 35.0% | |
| CCGGACAACATAATATCAGA+AGG | - | chr4_3:20658776-20658795 | Msa0634020:CDS | 40.0% | |
| !!! | AGTTATGGTTGTTTTTGGGG+AGG | - | chr4_3:20658931-20658950 | Msa0634020:intron | 40.0% |
| !!! | GTTATGGTTGTTTTTGGGGA+GGG | - | chr4_3:20658932-20658951 | Msa0634020:intron | 40.0% |
| GCAGTCTTCCATTTCTTTGT+TGG | + | chr4_3:20659005-20659024 | None:intergenic | 40.0% | |
| !! | GTTGTTACTGTTTCTGGTGT+AGG | - | chr4_3:20659043-20659062 | Msa0634020:intron | 40.0% |
| AGATGTGACTGTTGTATCCT+GGG | + | chr4_3:20659270-20659289 | None:intergenic | 40.0% | |
| AAGATGTGACTGTTGTATCC+TGG | + | chr4_3:20659271-20659290 | None:intergenic | 40.0% | |
| AAACCTTGCTAATTCACGTG+CGG | + | chr4_3:20659301-20659320 | None:intergenic | 40.0% | |
| ACGTGAATTAGCAAGGTTTC+AGG | - | chr4_3:20659302-20659321 | Msa0634020:intron | 40.0% | |
| AAAAGGAGATATACGTGGGT+TGG | + | chr4_3:20659416-20659435 | None:intergenic | 40.0% | |
| CAAAATTCCAACATCTGGTG+GGG | - | chr4_3:20659646-20659665 | Msa0634020:CDS | 40.0% | |
| ATATTATCCCCACCAGATGT+TGG | + | chr4_3:20659656-20659675 | None:intergenic | 40.0% | |
| CCGGACAACATAATATCAGA+AGG | - | chr4_3:20658776-20658795 | Msa0634020:CDS | 40.0% | |
| !!! | AGTTATGGTTGTTTTTGGGG+AGG | - | chr4_3:20658931-20658950 | Msa0634020:intron | 40.0% |
| !!! | GTTATGGTTGTTTTTGGGGA+GGG | - | chr4_3:20658932-20658951 | Msa0634020:intron | 40.0% |
| GCAGTCTTCCATTTCTTTGT+TGG | + | chr4_3:20659005-20659024 | None:intergenic | 40.0% | |
| !! | GTTGTTACTGTTTCTGGTGT+AGG | - | chr4_3:20659043-20659062 | Msa0634020:intron | 40.0% |
| AGATGTGACTGTTGTATCCT+GGG | + | chr4_3:20659270-20659289 | None:intergenic | 40.0% | |
| AAGATGTGACTGTTGTATCC+TGG | + | chr4_3:20659271-20659290 | None:intergenic | 40.0% | |
| AAACCTTGCTAATTCACGTG+CGG | + | chr4_3:20659301-20659320 | None:intergenic | 40.0% | |
| ACGTGAATTAGCAAGGTTTC+AGG | - | chr4_3:20659302-20659321 | Msa0634020:intron | 40.0% | |
| AAAAGGAGATATACGTGGGT+TGG | + | chr4_3:20659416-20659435 | None:intergenic | 40.0% | |
| CAAAATTCCAACATCTGGTG+GGG | - | chr4_3:20659646-20659665 | Msa0634020:CDS | 40.0% | |
| ATATTATCCCCACCAGATGT+TGG | + | chr4_3:20659656-20659675 | None:intergenic | 40.0% | |
| GTTGTCCGGTGAAAAGTGAT+AGG | + | chr4_3:20658765-20658784 | None:intergenic | 45.0% | |
| !! | ACTAACCACTTTTGGCCATG+AGG | - | chr4_3:20658862-20658881 | Msa0634020:intron | 45.0% |
| TTATGCTCTGCCAATCCTCA+TGG | + | chr4_3:20658880-20658899 | None:intergenic | 45.0% | |
| AGACTGCAATGCAGTAGACA+AGG | - | chr4_3:20659018-20659037 | Msa0634020:intron | 45.0% | |
| !! | TTAAGAGTATTTCGCCACCC+CGG | - | chr4_3:20659205-20659224 | Msa0634020:intron | 45.0% |
| AGCTATGAGACCTATCGCAT+CGG | + | chr4_3:20659240-20659259 | None:intergenic | 45.0% | |
| TCTCATAGCTAATACTCCCC+AGG | - | chr4_3:20659250-20659269 | Msa0634020:intron | 45.0% | |
| GATGTGACTGTTGTATCCTG+GGG | + | chr4_3:20659269-20659288 | None:intergenic | 45.0% | |
| CCAGTAACATTATTCTCCGC+TGG | + | chr4_3:20659686-20659705 | None:intergenic | 45.0% | |
| CCAGCGGAGAATAATGTTAC+TGG | - | chr4_3:20659683-20659702 | Msa0634020:CDS | 45.0% | |
| GTTGTCCGGTGAAAAGTGAT+AGG | + | chr4_3:20658765-20658784 | None:intergenic | 45.0% | |
| !! | ACTAACCACTTTTGGCCATG+AGG | - | chr4_3:20658862-20658881 | Msa0634020:intron | 45.0% |
| TTATGCTCTGCCAATCCTCA+TGG | + | chr4_3:20658880-20658899 | None:intergenic | 45.0% | |
| AGACTGCAATGCAGTAGACA+AGG | - | chr4_3:20659018-20659037 | Msa0634020:intron | 45.0% | |
| !! | TTAAGAGTATTTCGCCACCC+CGG | - | chr4_3:20659205-20659224 | Msa0634020:intron | 45.0% |
| AGCTATGAGACCTATCGCAT+CGG | + | chr4_3:20659240-20659259 | None:intergenic | 45.0% | |
| TCTCATAGCTAATACTCCCC+AGG | - | chr4_3:20659250-20659269 | Msa0634020:intron | 45.0% | |
| GATGTGACTGTTGTATCCTG+GGG | + | chr4_3:20659269-20659288 | None:intergenic | 45.0% | |
| CCAGTAACATTATTCTCCGC+TGG | + | chr4_3:20659686-20659705 | None:intergenic | 45.0% | |
| CCAGCGGAGAATAATGTTAC+TGG | - | chr4_3:20659683-20659702 | Msa0634020:CDS | 45.0% | |
| !! | CACCGCCTATCACTTTTCAC+CGG | - | chr4_3:20658757-20658776 | Msa0634020:CDS | 50.0% |
| GTCCGGTGAAAAGTGATAGG+CGG | + | chr4_3:20658762-20658781 | None:intergenic | 50.0% | |
| CCAATCCTCATGGCCAAAAG+TGG | + | chr4_3:20658870-20658889 | None:intergenic | 50.0% | |
| !! | CCACTTTTGGCCATGAGGAT+TGG | - | chr4_3:20658867-20658886 | Msa0634020:intron | 50.0% |
| ATCGCATCGGGTAACCTATC+CGG | + | chr4_3:20659227-20659246 | None:intergenic | 50.0% | |
| GATAGGTTACCCGATGCGAT+AGG | - | chr4_3:20659227-20659246 | Msa0634020:intron | 50.0% | |
| GCTATGAGACCTATCGCATC+GGG | + | chr4_3:20659239-20659258 | None:intergenic | 50.0% | |
| !! | CACCGCCTATCACTTTTCAC+CGG | - | chr4_3:20658757-20658776 | Msa0634020:CDS | 50.0% |
| GTCCGGTGAAAAGTGATAGG+CGG | + | chr4_3:20658762-20658781 | None:intergenic | 50.0% | |
| CCAATCCTCATGGCCAAAAG+TGG | + | chr4_3:20658870-20658889 | None:intergenic | 50.0% | |
| !! | CCACTTTTGGCCATGAGGAT+TGG | - | chr4_3:20658867-20658886 | Msa0634020:intron | 50.0% |
| ATCGCATCGGGTAACCTATC+CGG | + | chr4_3:20659227-20659246 | None:intergenic | 50.0% | |
| GATAGGTTACCCGATGCGAT+AGG | - | chr4_3:20659227-20659246 | Msa0634020:intron | 50.0% | |
| GCTATGAGACCTATCGCATC+GGG | + | chr4_3:20659239-20659258 | None:intergenic | 50.0% | |
| ! | TGAGGTGTGCACGAAGCACT+GGG | - | chr4_3:20659181-20659200 | Msa0634020:intron | 55.0% |
| AGTATTTCGCCACCCCGGAT+AGG | - | chr4_3:20659210-20659229 | Msa0634020:intron | 55.0% | |
| TCGCATCGGGTAACCTATCC+GGG | + | chr4_3:20659226-20659245 | None:intergenic | 55.0% | |
| GCACCGCACGTGAATTAGCA+AGG | - | chr4_3:20659295-20659314 | Msa0634020:intron | 55.0% | |
| ! | TGAGGTGTGCACGAAGCACT+GGG | - | chr4_3:20659181-20659200 | Msa0634020:intron | 55.0% |
| AGTATTTCGCCACCCCGGAT+AGG | - | chr4_3:20659210-20659229 | Msa0634020:intron | 55.0% | |
| TCGCATCGGGTAACCTATCC+GGG | + | chr4_3:20659226-20659245 | None:intergenic | 55.0% | |
| GCACCGCACGTGAATTAGCA+AGG | - | chr4_3:20659295-20659314 | Msa0634020:intron | 55.0% | |
| CTGAGGTGTGCACGAAGCAC+TGG | - | chr4_3:20659180-20659199 | Msa0634020:intron | 60.0% | |
| ATCGGGTAACCTATCCGGGG+TGG | + | chr4_3:20659222-20659241 | None:intergenic | 60.0% | |
| CGCATCGGGTAACCTATCCG+GGG | + | chr4_3:20659225-20659244 | None:intergenic | 60.0% | |
| CTGAGGTGTGCACGAAGCAC+TGG | - | chr4_3:20659180-20659199 | Msa0634020:intron | 60.0% | |
| ATCGGGTAACCTATCCGGGG+TGG | + | chr4_3:20659222-20659241 | None:intergenic | 60.0% | |
| CGCATCGGGTAACCTATCCG+GGG | + | chr4_3:20659225-20659244 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 20658749 | 20659796 | 20658749 | ID=Msa0634020;Name=Msa0634020 |
| chr4_3 | mRNA | 20658749 | 20659796 | 20658749 | ID=Msa0634020-mRNA-1;Parent=Msa0634020;Name=Msa0634020-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0|0|2|0|92 |
| chr4_3 | exon | 20659628 | 20659796 | 20659628 | ID=Msa0634020-mRNA-1:exon:5464;Parent=Msa0634020-mRNA-1 |
| chr4_3 | exon | 20658749 | 20658858 | 20658749 | ID=Msa0634020-mRNA-1:exon:5463;Parent=Msa0634020-mRNA-1 |
| chr4_3 | CDS | 20659628 | 20659796 | 20659628 | ID=Msa0634020-mRNA-1:cds;Parent=Msa0634020-mRNA-1 |
| chr4_3 | CDS | 20658749 | 20658858 | 20658749 | ID=Msa0634020-mRNA-1:cds;Parent=Msa0634020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
