Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537500 | RHN59041.1 | 46.939 | 147 | 23 | 4 | 1 | 92 | 10 | 156 | 6.54e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537500 | A0A396I2I7 | 46.939 | 147 | 23 | 4 | 1 | 92 | 10 | 156 | 3.12e-28 | 108 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011500 | Msa0537500 | 0.801227 | 9.947277e-49 | -8.615850e-47 |
| Msa0026450 | Msa0537500 | 0.833298 | 5.779013e-56 | -8.615850e-47 |
| Msa0112750 | Msa0537500 | 0.815731 | 7.953604e-52 | -8.615850e-47 |
| Msa0131770 | Msa0537500 | 0.819988 | 8.697687e-53 | -8.615850e-47 |
| Msa0142220 | Msa0537500 | 0.850776 | 1.364247e-60 | -8.615850e-47 |
| Msa0145260 | Msa0537500 | 0.836462 | 9.227944e-57 | -8.615850e-47 |
| Msa0165520 | Msa0537500 | 0.835643 | 1.489309e-56 | -8.615850e-47 |
| Msa0218810 | Msa0537500 | 0.802415 | 5.672337e-49 | -8.615850e-47 |
| Msa0236250 | Msa0537500 | 0.816850 | 4.470108e-52 | -8.615850e-47 |
| Msa0399300 | Msa0537500 | 0.810646 | 1.039606e-50 | -8.615850e-47 |
| Msa0436800 | Msa0537500 | 0.808570 | 2.902278e-50 | -8.615850e-47 |
| Msa0243890 | Msa0537500 | 0.807306 | 5.391578e-50 | -8.615850e-47 |
| Msa0272730 | Msa0537500 | 0.801167 | 1.023215e-48 | -8.615850e-47 |
| Msa0273100 | Msa0537500 | 0.824857 | 6.429841e-54 | -8.615850e-47 |
| Msa0290870 | Msa0537500 | 0.800128 | 1.666470e-48 | -8.615850e-47 |
| Msa0326940 | Msa0537500 | 0.803153 | 3.993425e-49 | -8.615850e-47 |
| Msa0483650 | Msa0537500 | 0.828920 | 6.875991e-55 | -8.615850e-47 |
| Msa0484780 | Msa0537500 | 0.801803 | 7.576577e-49 | -8.615850e-47 |
| Msa0512890 | Msa0537500 | 0.808050 | 3.745894e-50 | -8.615850e-47 |
| Msa0512900 | Msa0537500 | 0.801032 | 1.090096e-48 | -8.615850e-47 |
| Msa0520700 | Msa0537500 | 0.800418 | 1.455085e-48 | -8.615850e-47 |
| Msa0528950 | Msa0537500 | 0.800144 | 1.653948e-48 | -8.615850e-47 |
| Msa0537500 | Msa0553240 | 0.815163 | 1.064240e-51 | -8.615850e-47 |
| Msa0537500 | Msa0559830 | 0.812656 | 3.797967e-51 | -8.615850e-47 |
| Msa0537500 | Msa0589780 | 0.800863 | 1.180603e-48 | -8.615850e-47 |
| Msa0537500 | Msa0634020 | 0.899411 | 2.035529e-77 | -8.615850e-47 |
| Msa0537500 | Msa0678930 | 0.824258 | 8.897825e-54 | -8.615850e-47 |
| Msa0537500 | Msa0688270 | 0.801167 | 1.022896e-48 | -8.615850e-47 |
| Msa0537500 | Msa0711830 | 0.821753 | 3.414612e-53 | -8.615850e-47 |
| Msa0537500 | Msa0724210 | 0.814153 | 1.781400e-51 | -8.615850e-47 |
| Msa0537500 | Msa0731940 | 0.800402 | 1.465514e-48 | -8.615850e-47 |
| Msa0537500 | Msa0745610 | 0.809973 | 1.452180e-50 | -8.615850e-47 |
| Msa0537500 | Msa0750240 | 0.815877 | 7.381319e-52 | -8.615850e-47 |
| Msa0537500 | Msa0761470 | 0.807794 | 4.247827e-50 | -8.615850e-47 |
| Msa0537500 | Msa0762360 | 0.808891 | 2.478973e-50 | -8.615850e-47 |
| Msa0537500 | Msa0764960 | 0.803759 | 2.990342e-49 | -8.615850e-47 |
| Msa0537500 | Msa0766630 | 0.820872 | 5.450573e-53 | -8.615850e-47 |
| Msa0537500 | Msa0794700 | 0.820328 | 7.269392e-53 | -8.615850e-47 |
| Msa0537500 | Msa0811080 | 0.835134 | 2.002541e-56 | -8.615850e-47 |
| Msa0537500 | Msa0830510 | 0.820806 | 5.645672e-53 | -8.615850e-47 |
| Msa0537500 | Msa0848060 | 0.815089 | 1.105354e-51 | -8.615850e-47 |
| Msa0537500 | Msa0861850 | 0.805323 | 1.411195e-49 | -8.615850e-47 |
| Msa0537500 | Msa0884740 | 0.806400 | 8.380028e-50 | -8.615850e-47 |
| Msa0537500 | Msa0898750 | 0.819103 | 1.384191e-52 | -8.615850e-47 |
| Msa0537500 | Msa0901400 | 0.810729 | 9.970646e-51 | -8.615850e-47 |
| Msa0537500 | Msa0922720 | 0.804412 | 2.187537e-49 | -8.615850e-47 |
| Msa0537500 | Msa0928130 | 0.816171 | 6.344780e-52 | -8.615850e-47 |
| Msa0537500 | Msa0935910 | 0.806111 | 9.641305e-50 | -8.615850e-47 |
| Msa0537500 | Msa0964310 | 0.806210 | 9.190253e-50 | -8.615850e-47 |
| Msa0537500 | Msa0965610 | 0.805235 | 1.472428e-49 | -8.615850e-47 |
| Msa0537500 | Msa0968420 | 0.817962 | 2.511352e-52 | -8.615850e-47 |
| Msa0537500 | Msa0969260 | 0.821296 | 4.353101e-53 | -8.615850e-47 |
| Msa0537500 | Msa0969450 | 0.830945 | 2.206340e-55 | -8.615850e-47 |
| Msa0537500 | Msa0969520 | 0.820498 | 6.646246e-53 | -8.615850e-47 |
| Msa0537500 | Msa1002330 | 0.811694 | 6.160228e-51 | -8.615850e-47 |
| Msa0537500 | Msa1023950 | 0.806491 | 8.017653e-50 | -8.615850e-47 |
| Msa0537500 | Msa1082500 | 0.807525 | 4.845421e-50 | -8.615850e-47 |
| Msa0537500 | Msa1122520 | 0.812800 | 3.533405e-51 | -8.615850e-47 |
| Msa0537500 | Msa1251910 | 0.811412 | 7.093567e-51 | -8.615850e-47 |
| Msa0537500 | Msa1307210 | 0.809598 | 1.748413e-50 | -8.615850e-47 |
| Msa0537500 | Msa1389200 | 0.823533 | 1.316149e-53 | -8.615850e-47 |
| Msa0537500 | Msa1438250 | 0.811488 | 6.828443e-51 | -8.615850e-47 |
| Msa0537500 | Msa1466540 | 0.819628 | 1.051214e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0537500 | MtrunA17_Chr4g0008981 | 46.939 | 147 | 23 | 4 | 1 | 92 | 10 | 156 | 6.02e-32 | 108 |
| Msa0537500 | MtrunA17_Chr4g0009241 | 69.492 | 59 | 18 | 0 | 1 | 59 | 1446 | 1504 | 6.88e-24 | 94.0 |
| Msa0537500 | MtrunA17_Chr4g0009141 | 71.930 | 57 | 16 | 0 | 1 | 57 | 1442 | 1498 | 8.97e-23 | 90.9 |
| Msa0537500 | MtrunA17_Chr4g0009171 | 69.091 | 55 | 17 | 0 | 1 | 55 | 1647 | 1701 | 1.11e-20 | 84.7 |
| Msa0537500 | MtrunA17_Chr4g0009401 | 67.273 | 55 | 18 | 0 | 1 | 55 | 1424 | 1478 | 2.87e-20 | 83.6 |
| Msa0537500 | MtrunA17_Chr4g0009011 | 63.158 | 57 | 21 | 0 | 1 | 57 | 210 | 266 | 2.79e-19 | 80.1 |
| Msa0537500 | MtrunA17_Chr4g0009211 | 64.912 | 57 | 20 | 0 | 1 | 57 | 10 | 66 | 3.84e-19 | 76.3 |
| Msa0537500 | MtrunA17_Chr4g0009041 | 67.273 | 55 | 18 | 0 | 1 | 55 | 1430 | 1484 | 6.46e-19 | 79.7 |
| Msa0537500 | MtrunA17_Chr4g0009361 | 70.370 | 54 | 16 | 0 | 2 | 55 | 439 | 492 | 1.43e-18 | 78.6 |
| Msa0537500 | MtrunA17_Chr4g0009101 | 63.158 | 57 | 21 | 0 | 1 | 57 | 1458 | 1514 | 2.63e-18 | 78.2 |
| Msa0537500 | MtrunA17_Chr4g0009301 | 63.636 | 55 | 20 | 0 | 1 | 55 | 1462 | 1516 | 1.37e-17 | 75.9 |
| Msa0537500 | MtrunA17_Chr4g0005871 | 48.276 | 58 | 30 | 0 | 1 | 58 | 1055 | 1112 | 1.13e-14 | 67.8 |
| Msa0537500 | MtrunA17_Chr5g0414761 | 55.556 | 54 | 24 | 0 | 6 | 59 | 712 | 765 | 4.67e-14 | 65.9 |
| Msa0537500 | MtrunA17_Chr3g0085531 | 48.276 | 58 | 30 | 0 | 2 | 59 | 120 | 177 | 4.97e-14 | 65.5 |
| Msa0537500 | MtrunA17_Chr4g0005591 | 46.552 | 58 | 31 | 0 | 1 | 58 | 1007 | 1064 | 1.62e-13 | 64.3 |
| Msa0537500 | MtrunA17_Chr4g0005891 | 46.552 | 58 | 31 | 0 | 1 | 58 | 979 | 1036 | 1.91e-13 | 64.3 |
| Msa0537500 | MtrunA17_Chr3g0085731 | 52.830 | 53 | 25 | 0 | 2 | 54 | 930 | 982 | 2.54e-13 | 63.9 |
| Msa0537500 | MtrunA17_Chr8g0352211 | 52.830 | 53 | 25 | 0 | 2 | 54 | 852 | 904 | 2.82e-13 | 63.5 |
| Msa0537500 | MtrunA17_Chr4g0005851 | 44.828 | 58 | 32 | 0 | 1 | 58 | 965 | 1022 | 3.53e-13 | 63.5 |
| Msa0537500 | MtrunA17_Chr8g0370511 | 50.000 | 58 | 29 | 0 | 2 | 59 | 922 | 979 | 3.57e-13 | 63.5 |
| Msa0537500 | MtrunA17_Chr8g0339011 | 50.000 | 54 | 27 | 0 | 6 | 59 | 921 | 974 | 4.21e-13 | 63.2 |
| Msa0537500 | MtrunA17_Chr8g0338981 | 51.852 | 54 | 26 | 0 | 6 | 59 | 925 | 978 | 5.82e-13 | 62.8 |
| Msa0537500 | MtrunA17_Chr8g0338881 | 55.102 | 49 | 22 | 0 | 11 | 59 | 962 | 1010 | 7.16e-13 | 62.4 |
| Msa0537500 | MtrunA17_Chr8g0339021 | 48.276 | 58 | 30 | 0 | 2 | 59 | 912 | 969 | 3.01e-12 | 60.8 |
| Msa0537500 | MtrunA17_Chr7g0223531 | 51.724 | 58 | 28 | 0 | 2 | 59 | 938 | 995 | 4.63e-12 | 60.1 |
| Msa0537500 | MtrunA17_Chr8g0352221 | 50.000 | 54 | 27 | 0 | 1 | 54 | 838 | 891 | 6.08e-12 | 59.7 |
| Msa0537500 | MtrunA17_Chr8g0339031 | 51.852 | 54 | 26 | 0 | 6 | 59 | 933 | 986 | 7.61e-12 | 59.7 |
| Msa0537500 | MtrunA17_Chr8g0343781 | 42.373 | 59 | 34 | 0 | 1 | 59 | 5 | 63 | 1.04e-11 | 55.5 |
| Msa0537500 | MtrunA17_Chr8g0338841 | 45.763 | 59 | 32 | 0 | 1 | 59 | 365 | 423 | 2.49e-11 | 58.2 |
| Msa0537500 | MtrunA17_Chr5g0420331 | 44.828 | 58 | 32 | 0 | 2 | 59 | 923 | 980 | 4.14e-11 | 57.4 |
| Msa0537500 | MtrunA17_Chr3g0114381 | 48.148 | 54 | 28 | 0 | 1 | 54 | 156 | 209 | 4.24e-11 | 57.0 |
| Msa0537500 | MtrunA17_Chr5g0420341 | 46.552 | 58 | 31 | 0 | 2 | 59 | 923 | 980 | 5.50e-11 | 57.0 |
| Msa0537500 | MtrunA17_Chr2g0296451 | 57.778 | 45 | 19 | 0 | 15 | 59 | 454 | 498 | 7.56e-11 | 56.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 10 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGATACACTAACCACTTT+TGG | 0.342795 | 4_1:-16203399 | Msa0537500:CDS |
| CCAGCGGAGAATAATGTTAC+TGG | 0.394181 | 4_1:-16202570 | Msa0537500:intron |
| ATAACATCAAATCTAGAATC+TGG | 0.419478 | 4_1:-16203357 | Msa0537500:intron |
| CCTTCTGATATTATGTTGTC+CGG | 0.472049 | 4_1:+16203477 | None:intergenic |
| GAGACATGACAGAACTGTAA+TGG | 0.485935 | 4_1:-16202476 | None:intergenic |
| CCAATCCTCATGGCCAAAAG+TGG | 0.541687 | 4_1:+16203386 | None:intergenic |
| GTTGTCCGGTGAAAAGTGAT+AGG | 0.552940 | 4_1:+16203491 | None:intergenic |
| TTATGCTCTGCCAATCCTCA+TGG | 0.558391 | 4_1:+16203376 | None:intergenic |
| CCGGACAACATAATATCAGA+AGG | 0.632034 | 4_1:-16203477 | Msa0537500:CDS |
| GTCCGGTGAAAAGTGATAGG+CGG | 0.732482 | 4_1:+16203494 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGACATAGAATTATTATA+AGG | - | chr4_1:16202801-16202820 | Msa0537500:intron | 15.0% |
| !!! | TTCAATTTACCATTTTAAAT+AGG | + | chr4_1:16203189-16203208 | None:intergenic | 15.0% |
| !!! | CTCTATTATTTCAATATTTT+CGG | + | chr4_1:16203213-16203232 | None:intergenic | 15.0% |
| !! | TATGACATAGAATTATTATA+AGG | - | chr4_1:16202801-16202820 | Msa0537500:intron | 15.0% |
| !!! | TTCAATTTACCATTTTAAAT+AGG | + | chr4_1:16203189-16203208 | None:intergenic | 15.0% |
| !!! | CTCTATTATTTCAATATTTT+CGG | + | chr4_1:16203213-16203232 | None:intergenic | 15.0% |
| !! | ATAACATCAAATCTAGAATC+TGG | - | chr4_1:16202626-16202645 | Msa0537500:intron | 25.0% |
| ! | AAGGGAACATAAGTTATATT+AGG | - | chr4_1:16203073-16203092 | Msa0537500:intron | 25.0% |
| ! | AAGAGAGAATATATACATAG+TGG | + | chr4_1:16203111-16203130 | None:intergenic | 25.0% |
| ! | TATAAAAAGGAGATATACGT+GGG | + | chr4_1:16203150-16203169 | None:intergenic | 25.0% |
| ! | TAATACGTGCATGTATAAAA+AGG | + | chr4_1:16203163-16203182 | None:intergenic | 25.0% |
| ! | GTATTAGCTCCTATTTAAAA+TGG | - | chr4_1:16203177-16203196 | Msa0537500:intron | 25.0% |
| ! | ATGTATAGAAAAAGAAAGAG+AGG | - | chr4_1:16203485-16203504 | Msa0537500:CDS | 25.0% |
| !! | ATAACATCAAATCTAGAATC+TGG | - | chr4_1:16202626-16202645 | Msa0537500:intron | 25.0% |
| ! | AAGGGAACATAAGTTATATT+AGG | - | chr4_1:16203073-16203092 | Msa0537500:intron | 25.0% |
| ! | AAGAGAGAATATATACATAG+TGG | + | chr4_1:16203111-16203130 | None:intergenic | 25.0% |
| ! | TATAAAAAGGAGATATACGT+GGG | + | chr4_1:16203150-16203169 | None:intergenic | 25.0% |
| ! | TAATACGTGCATGTATAAAA+AGG | + | chr4_1:16203163-16203182 | None:intergenic | 25.0% |
| ! | GTATTAGCTCCTATTTAAAA+TGG | - | chr4_1:16203177-16203196 | Msa0537500:intron | 25.0% |
| ! | ATGTATAGAAAAAGAAAGAG+AGG | - | chr4_1:16203485-16203504 | Msa0537500:CDS | 25.0% |
| !!! | TGGAAGTTATGGTTGTTTTT+GGG | - | chr4_1:16202657-16202676 | Msa0537500:intron | 30.0% |
| ! | AACTTATCGATTATTGACTG+AGG | - | chr4_1:16202893-16202912 | Msa0537500:intron | 30.0% |
| ! | AACAACTTTTAGATGCTCAA+GGG | - | chr4_1:16203055-16203074 | Msa0537500:intron | 30.0% |
| GAATATATACATAGTGGCTA+TGG | + | chr4_1:16203105-16203124 | None:intergenic | 30.0% | |
| GTATAAAAAGGAGATATACG+TGG | + | chr4_1:16203151-16203170 | None:intergenic | 30.0% | |
| TGGTCATGTAACTGAAAAAT+AGG | - | chr4_1:16203261-16203280 | Msa0537500:intron | 30.0% | |
| TCAAACAAAATTCCAACATC+TGG | - | chr4_1:16203371-16203390 | Msa0537500:CDS | 30.0% | |
| !!! | TGGAAGTTATGGTTGTTTTT+GGG | - | chr4_1:16202657-16202676 | Msa0537500:intron | 30.0% |
| ! | AACTTATCGATTATTGACTG+AGG | - | chr4_1:16202893-16202912 | Msa0537500:intron | 30.0% |
| ! | AACAACTTTTAGATGCTCAA+GGG | - | chr4_1:16203055-16203074 | Msa0537500:intron | 30.0% |
| GAATATATACATAGTGGCTA+TGG | + | chr4_1:16203105-16203124 | None:intergenic | 30.0% | |
| GTATAAAAAGGAGATATACG+TGG | + | chr4_1:16203151-16203170 | None:intergenic | 30.0% | |
| TGGTCATGTAACTGAAAAAT+AGG | - | chr4_1:16203261-16203280 | Msa0537500:intron | 30.0% | |
| TCAAACAAAATTCCAACATC+TGG | - | chr4_1:16203371-16203390 | Msa0537500:CDS | 30.0% | |
| CCTTCTGATATTATGTTGTC+CGG | + | chr4_1:16202509-16202528 | None:intergenic | 35.0% | |
| ! | ATCTCTTTTATACGCGTGAA+TGG | + | chr4_1:16202570-16202589 | None:intergenic | 35.0% |
| ! | AGAGATACACTAACCACTTT+TGG | - | chr4_1:16202584-16202603 | Msa0537500:intron | 35.0% |
| ! | TCTAGAATCTGGTAACAAAG+TGG | - | chr4_1:16202637-16202656 | Msa0537500:intron | 35.0% |
| TGGTAACAAAGTGGAAGTTA+TGG | - | chr4_1:16202646-16202665 | Msa0537500:intron | 35.0% | |
| !! | GTGGAAGTTATGGTTGTTTT+TGG | - | chr4_1:16202656-16202675 | Msa0537500:intron | 35.0% |
| !!! | GGAAGTTATGGTTGTTTTTG+GGG | - | chr4_1:16202658-16202677 | Msa0537500:intron | 35.0% |
| TCAACCAACCAACAAAGAAA+TGG | - | chr4_1:16202724-16202743 | Msa0537500:intron | 35.0% | |
| TCTTCCATTTCTTTGTTGGT+TGG | + | chr4_1:16202731-16202750 | None:intergenic | 35.0% | |
| AAGGAAGTTGTTACTGTTTC+TGG | - | chr4_1:16202767-16202786 | Msa0537500:intron | 35.0% | |
| ! | GAACAACTTTTAGATGCTCA+AGG | - | chr4_1:16203054-16203073 | Msa0537500:intron | 35.0% |
| ! | AAAGCTCGTTTTGTCAAACT+TGG | - | chr4_1:16203235-16203254 | Msa0537500:intron | 35.0% |
| ! | CGTTTTGTCAAACTTGGAAT+TGG | - | chr4_1:16203241-16203260 | Msa0537500:intron | 35.0% |
| AACAAAATTCCAACATCTGG+TGG | - | chr4_1:16203374-16203393 | Msa0537500:CDS | 35.0% | |
| ACAAAATTCCAACATCTGGT+GGG | - | chr4_1:16203375-16203394 | Msa0537500:CDS | 35.0% | |
| GGATAATATTGATATGCCAG+CGG | - | chr4_1:16203397-16203416 | Msa0537500:CDS | 35.0% | |
| CCTTCTGATATTATGTTGTC+CGG | + | chr4_1:16202509-16202528 | None:intergenic | 35.0% | |
| ! | ATCTCTTTTATACGCGTGAA+TGG | + | chr4_1:16202570-16202589 | None:intergenic | 35.0% |
| ! | AGAGATACACTAACCACTTT+TGG | - | chr4_1:16202584-16202603 | Msa0537500:intron | 35.0% |
| ! | TCTAGAATCTGGTAACAAAG+TGG | - | chr4_1:16202637-16202656 | Msa0537500:intron | 35.0% |
| TGGTAACAAAGTGGAAGTTA+TGG | - | chr4_1:16202646-16202665 | Msa0537500:intron | 35.0% | |
| !! | GTGGAAGTTATGGTTGTTTT+TGG | - | chr4_1:16202656-16202675 | Msa0537500:intron | 35.0% |
| !!! | GGAAGTTATGGTTGTTTTTG+GGG | - | chr4_1:16202658-16202677 | Msa0537500:intron | 35.0% |
| TCAACCAACCAACAAAGAAA+TGG | - | chr4_1:16202724-16202743 | Msa0537500:intron | 35.0% | |
| TCTTCCATTTCTTTGTTGGT+TGG | + | chr4_1:16202731-16202750 | None:intergenic | 35.0% | |
| AAGGAAGTTGTTACTGTTTC+TGG | - | chr4_1:16202767-16202786 | Msa0537500:intron | 35.0% | |
| ! | GAACAACTTTTAGATGCTCA+AGG | - | chr4_1:16203054-16203073 | Msa0537500:intron | 35.0% |
| ! | AAAGCTCGTTTTGTCAAACT+TGG | - | chr4_1:16203235-16203254 | Msa0537500:intron | 35.0% |
| ! | CGTTTTGTCAAACTTGGAAT+TGG | - | chr4_1:16203241-16203260 | Msa0537500:intron | 35.0% |
| AACAAAATTCCAACATCTGG+TGG | - | chr4_1:16203374-16203393 | Msa0537500:CDS | 35.0% | |
| ACAAAATTCCAACATCTGGT+GGG | - | chr4_1:16203375-16203394 | Msa0537500:CDS | 35.0% | |
| GGATAATATTGATATGCCAG+CGG | - | chr4_1:16203397-16203416 | Msa0537500:CDS | 35.0% | |
| CCGGACAACATAATATCAGA+AGG | - | chr4_1:16202506-16202525 | Msa0537500:CDS | 40.0% | |
| !!! | AGTTATGGTTGTTTTTGGGG+AGG | - | chr4_1:16202661-16202680 | Msa0537500:intron | 40.0% |
| !!! | GTTATGGTTGTTTTTGGGGA+GGG | - | chr4_1:16202662-16202681 | Msa0537500:intron | 40.0% |
| GCAGTCTTCCATTTCTTTGT+TGG | + | chr4_1:16202735-16202754 | None:intergenic | 40.0% | |
| !! | GTTGTTACTGTTTCTGGTGT+AGG | - | chr4_1:16202773-16202792 | Msa0537500:intron | 40.0% |
| AGATGTGACTGTTGTATCCT+GGG | + | chr4_1:16203000-16203019 | None:intergenic | 40.0% | |
| AAGATGTGACTGTTGTATCC+TGG | + | chr4_1:16203001-16203020 | None:intergenic | 40.0% | |
| AAACCTTGCTAATTCACGTG+CGG | + | chr4_1:16203031-16203050 | None:intergenic | 40.0% | |
| ACGTGAATTAGCAAGGTTTC+AGG | - | chr4_1:16203032-16203051 | Msa0537500:intron | 40.0% | |
| AAAAGGAGATATACGTGGGT+TGG | + | chr4_1:16203146-16203165 | None:intergenic | 40.0% | |
| CAAAATTCCAACATCTGGTG+GGG | - | chr4_1:16203376-16203395 | Msa0537500:CDS | 40.0% | |
| ATATTATCCCCACCAGATGT+TGG | + | chr4_1:16203386-16203405 | None:intergenic | 40.0% | |
| CCGGACAACATAATATCAGA+AGG | - | chr4_1:16202506-16202525 | Msa0537500:CDS | 40.0% | |
| !!! | AGTTATGGTTGTTTTTGGGG+AGG | - | chr4_1:16202661-16202680 | Msa0537500:intron | 40.0% |
| !!! | GTTATGGTTGTTTTTGGGGA+GGG | - | chr4_1:16202662-16202681 | Msa0537500:intron | 40.0% |
| GCAGTCTTCCATTTCTTTGT+TGG | + | chr4_1:16202735-16202754 | None:intergenic | 40.0% | |
| !! | GTTGTTACTGTTTCTGGTGT+AGG | - | chr4_1:16202773-16202792 | Msa0537500:intron | 40.0% |
| AGATGTGACTGTTGTATCCT+GGG | + | chr4_1:16203000-16203019 | None:intergenic | 40.0% | |
| AAGATGTGACTGTTGTATCC+TGG | + | chr4_1:16203001-16203020 | None:intergenic | 40.0% | |
| AAACCTTGCTAATTCACGTG+CGG | + | chr4_1:16203031-16203050 | None:intergenic | 40.0% | |
| ACGTGAATTAGCAAGGTTTC+AGG | - | chr4_1:16203032-16203051 | Msa0537500:intron | 40.0% | |
| AAAAGGAGATATACGTGGGT+TGG | + | chr4_1:16203146-16203165 | None:intergenic | 40.0% | |
| CAAAATTCCAACATCTGGTG+GGG | - | chr4_1:16203376-16203395 | Msa0537500:CDS | 40.0% | |
| ATATTATCCCCACCAGATGT+TGG | + | chr4_1:16203386-16203405 | None:intergenic | 40.0% | |
| GTTGTCCGGTGAAAAGTGAT+AGG | + | chr4_1:16202495-16202514 | None:intergenic | 45.0% | |
| !! | ACTAACCACTTTTGGCCATG+AGG | - | chr4_1:16202592-16202611 | Msa0537500:intron | 45.0% |
| TTATGCTCTGCCAATCCTCA+TGG | + | chr4_1:16202610-16202629 | None:intergenic | 45.0% | |
| AGACTGCAATGCAGTAGACA+AGG | - | chr4_1:16202748-16202767 | Msa0537500:intron | 45.0% | |
| !! | TTAAGAGTATTTCGCCACCC+CGG | - | chr4_1:16202935-16202954 | Msa0537500:intron | 45.0% |
| AGCTATGAGACCTATCGCAT+CGG | + | chr4_1:16202970-16202989 | None:intergenic | 45.0% | |
| TCTCATAGCTAATACTCCCC+AGG | - | chr4_1:16202980-16202999 | Msa0537500:intron | 45.0% | |
| GATGTGACTGTTGTATCCTG+GGG | + | chr4_1:16202999-16203018 | None:intergenic | 45.0% | |
| CCAGTAACATTATTCTCCGC+TGG | + | chr4_1:16203416-16203435 | None:intergenic | 45.0% | |
| CCAGCGGAGAATAATGTTAC+TGG | - | chr4_1:16203413-16203432 | Msa0537500:CDS | 45.0% | |
| GTTGTCCGGTGAAAAGTGAT+AGG | + | chr4_1:16202495-16202514 | None:intergenic | 45.0% | |
| !! | ACTAACCACTTTTGGCCATG+AGG | - | chr4_1:16202592-16202611 | Msa0537500:intron | 45.0% |
| TTATGCTCTGCCAATCCTCA+TGG | + | chr4_1:16202610-16202629 | None:intergenic | 45.0% | |
| AGACTGCAATGCAGTAGACA+AGG | - | chr4_1:16202748-16202767 | Msa0537500:intron | 45.0% | |
| !! | TTAAGAGTATTTCGCCACCC+CGG | - | chr4_1:16202935-16202954 | Msa0537500:intron | 45.0% |
| AGCTATGAGACCTATCGCAT+CGG | + | chr4_1:16202970-16202989 | None:intergenic | 45.0% | |
| TCTCATAGCTAATACTCCCC+AGG | - | chr4_1:16202980-16202999 | Msa0537500:intron | 45.0% | |
| GATGTGACTGTTGTATCCTG+GGG | + | chr4_1:16202999-16203018 | None:intergenic | 45.0% | |
| CCAGTAACATTATTCTCCGC+TGG | + | chr4_1:16203416-16203435 | None:intergenic | 45.0% | |
| CCAGCGGAGAATAATGTTAC+TGG | - | chr4_1:16203413-16203432 | Msa0537500:CDS | 45.0% | |
| !! | CACCGCCTATCACTTTTCAC+CGG | - | chr4_1:16202487-16202506 | Msa0537500:CDS | 50.0% |
| GTCCGGTGAAAAGTGATAGG+CGG | + | chr4_1:16202492-16202511 | None:intergenic | 50.0% | |
| CCAATCCTCATGGCCAAAAG+TGG | + | chr4_1:16202600-16202619 | None:intergenic | 50.0% | |
| !! | CCACTTTTGGCCATGAGGAT+TGG | - | chr4_1:16202597-16202616 | Msa0537500:intron | 50.0% |
| ATCGCATCGGGTAACCTATC+CGG | + | chr4_1:16202957-16202976 | None:intergenic | 50.0% | |
| GATAGGTTACCCGATGCGAT+AGG | - | chr4_1:16202957-16202976 | Msa0537500:intron | 50.0% | |
| GCTATGAGACCTATCGCATC+GGG | + | chr4_1:16202969-16202988 | None:intergenic | 50.0% | |
| !! | CACCGCCTATCACTTTTCAC+CGG | - | chr4_1:16202487-16202506 | Msa0537500:CDS | 50.0% |
| GTCCGGTGAAAAGTGATAGG+CGG | + | chr4_1:16202492-16202511 | None:intergenic | 50.0% | |
| CCAATCCTCATGGCCAAAAG+TGG | + | chr4_1:16202600-16202619 | None:intergenic | 50.0% | |
| !! | CCACTTTTGGCCATGAGGAT+TGG | - | chr4_1:16202597-16202616 | Msa0537500:intron | 50.0% |
| ATCGCATCGGGTAACCTATC+CGG | + | chr4_1:16202957-16202976 | None:intergenic | 50.0% | |
| GATAGGTTACCCGATGCGAT+AGG | - | chr4_1:16202957-16202976 | Msa0537500:intron | 50.0% | |
| GCTATGAGACCTATCGCATC+GGG | + | chr4_1:16202969-16202988 | None:intergenic | 50.0% | |
| ! | TGAGGTGTGCACGAAGCACT+GGG | - | chr4_1:16202911-16202930 | Msa0537500:intron | 55.0% |
| AGTATTTCGCCACCCCGGAT+AGG | - | chr4_1:16202940-16202959 | Msa0537500:intron | 55.0% | |
| TCGCATCGGGTAACCTATCC+GGG | + | chr4_1:16202956-16202975 | None:intergenic | 55.0% | |
| GCACCGCACGTGAATTAGCA+AGG | - | chr4_1:16203025-16203044 | Msa0537500:intron | 55.0% | |
| ! | TGAGGTGTGCACGAAGCACT+GGG | - | chr4_1:16202911-16202930 | Msa0537500:intron | 55.0% |
| AGTATTTCGCCACCCCGGAT+AGG | - | chr4_1:16202940-16202959 | Msa0537500:intron | 55.0% | |
| TCGCATCGGGTAACCTATCC+GGG | + | chr4_1:16202956-16202975 | None:intergenic | 55.0% | |
| GCACCGCACGTGAATTAGCA+AGG | - | chr4_1:16203025-16203044 | Msa0537500:intron | 55.0% | |
| CTGAGGTGTGCACGAAGCAC+TGG | - | chr4_1:16202910-16202929 | Msa0537500:intron | 60.0% | |
| ATCGGGTAACCTATCCGGGG+TGG | + | chr4_1:16202952-16202971 | None:intergenic | 60.0% | |
| CGCATCGGGTAACCTATCCG+GGG | + | chr4_1:16202955-16202974 | None:intergenic | 60.0% | |
| CTGAGGTGTGCACGAAGCAC+TGG | - | chr4_1:16202910-16202929 | Msa0537500:intron | 60.0% | |
| ATCGGGTAACCTATCCGGGG+TGG | + | chr4_1:16202952-16202971 | None:intergenic | 60.0% | |
| CGCATCGGGTAACCTATCCG+GGG | + | chr4_1:16202955-16202974 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 16202479 | 16203526 | 16202479 | ID=Msa0537500;Name=Msa0537500 |
| chr4_1 | mRNA | 16202479 | 16203526 | 16202479 | ID=Msa0537500-mRNA-1;Parent=Msa0537500;Name=Msa0537500-mRNA-1;_AED=0.47;_eAED=0.47;_QI=0|0|0|1|0|0|2|0|92 |
| chr4_1 | exon | 16203358 | 16203526 | 16203358 | ID=Msa0537500-mRNA-1:exon:4869;Parent=Msa0537500-mRNA-1 |
| chr4_1 | exon | 16202479 | 16202588 | 16202479 | ID=Msa0537500-mRNA-1:exon:4868;Parent=Msa0537500-mRNA-1 |
| chr4_1 | CDS | 16203358 | 16203526 | 16203358 | ID=Msa0537500-mRNA-1:cds;Parent=Msa0537500-mRNA-1 |
| chr4_1 | CDS | 16202479 | 16202588 | 16202479 | ID=Msa0537500-mRNA-1:cds;Parent=Msa0537500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
