Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634670 | XP_039686237.1 | 88.722 | 133 | 8 | 1 | 36 | 161 | 96 | 228 | 1.09e-79 | 249 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634670 | sp|Q9SZL8|FRS5_ARATH | 28.659 | 164 | 92 | 5 | 53 | 198 | 112 | 268 | 2.25e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634670 | A0A396J342 | 76.271 | 59 | 14 | 0 | 157 | 215 | 493 | 551 | 6.73e-19 | 95.5 |
| Msa0634670 | A0A396J342 | 87.218 | 133 | 10 | 1 | 36 | 161 | 96 | 228 | 4.32e-73 | 247 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0634670 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0634670 | Msa1246580 | 0.977516 | 6.151118e-144 | -8.615850e-47 |
| Msa0534800 | Msa0634670 | 0.914813 | 1.233612e-84 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634670 | MtrunA17_Chr2g0287651 | 87.218 | 133 | 10 | 1 | 36 | 161 | 96 | 228 | 8.32e-77 | 247 |
| Msa0634670 | MtrunA17_Chr2g0287651 | 76.271 | 59 | 14 | 0 | 157 | 215 | 493 | 551 | 1.30e-22 | 95.5 |
| Msa0634670 | MtrunA17_Chr1g0203051 | 34.615 | 130 | 78 | 1 | 39 | 161 | 103 | 232 | 8.80e-23 | 95.9 |
| Msa0634670 | MtrunA17_Chr3g0082121 | 34.091 | 132 | 75 | 4 | 39 | 161 | 67 | 195 | 3.00e-14 | 70.9 |
| Msa0634670 | MtrunA17_Chr5g0448761 | 32.479 | 117 | 71 | 2 | 53 | 161 | 99 | 215 | 5.64e-12 | 64.3 |
| Msa0634670 | MtrunA17_Chr8g0389811 | 37.363 | 91 | 50 | 1 | 37 | 120 | 106 | 196 | 4.86e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634670 | AT4G38180.1 | 28.659 | 164 | 92 | 5 | 53 | 198 | 112 | 268 | 2.28e-12 | 65.9 |
Find 54 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTCTTCATCAAAATAAT+TGG | 0.167098 | 4_3:-22263701 | Msa0634670:five_prime_UTR |
| TGTACGTTACAAAGCCAAAA+AGG | 0.274297 | 4_3:-22262190 | Msa0634670:CDS |
| AATCAGAACCTGTCATATAA+TGG | 0.299188 | 4_3:-22262031 | Msa0634670:CDS |
| GAGAGAGACGCAAGTGAAAT+TGG | 0.300523 | 4_3:+22263674 | None:intergenic |
| CTGTCATATAATGGGATATA+TGG | 0.309391 | 4_3:-22262022 | Msa0634670:CDS |
| GCCTTGCTTCACAATTTGTT+CGG | 0.318117 | 4_3:+22262217 | None:intergenic |
| CGGAGTGAAGATGGCGCTGC+TGG | 0.341163 | 4_3:+22263533 | None:intergenic |
| CCATTAGGAAAGGTGATGTT+AGG | 0.342221 | 4_3:-22262353 | Msa0634670:CDS |
| CCTTGCTTCACAATTTGTTC+GGG | 0.360091 | 4_3:+22262218 | None:intergenic |
| ATTTAGGTGGGGTTAATTCA+TGG | 0.368536 | 4_3:+22262130 | None:intergenic |
| TGGGTCGCATGTGGTGGTGG+TGG | 0.382507 | 4_3:+22263603 | None:intergenic |
| ATCAGAACCTGTCATATAAT+GGG | 0.403538 | 4_3:-22262030 | Msa0634670:CDS |
| GAGACATGAAGCACTTATCT+AGG | 0.412910 | 4_3:-22262272 | Msa0634670:CDS |
| TCGCATGTGGTGGTGGTGGA+AGG | 0.422546 | 4_3:+22263607 | None:intergenic |
| GGGTGCAAGTGTGTAAATTT+AGG | 0.429032 | 4_3:+22262114 | None:intergenic |
| GAGTGGGTCGCATGTGGTGG+TGG | 0.438262 | 4_3:+22263600 | None:intergenic |
| GATCTCTGCTGTGTAAATCT+TGG | 0.442124 | 4_3:+22261063 | None:intergenic |
| CCTAACATCACCTTTCCTAA+TGG | 0.442699 | 4_3:+22262353 | None:intergenic |
| AGGCTTGGAGAGCGAGGTGG+TGG | 0.470187 | 4_3:+22263509 | None:intergenic |
| AAAGATGAAATTATTGAGGC+TGG | 0.470276 | 4_3:-22261028 | Msa0634670:CDS |
| GGGATATATGGTTGCTCAGA+AGG | 0.480775 | 4_3:-22262010 | Msa0634670:CDS |
| TGGCGCTGCTGGGTCGCACG+TGG | 0.486275 | 4_3:+22263544 | None:intergenic |
| GCAAGTGTGTAAATTTAGGT+GGG | 0.497265 | 4_3:+22262118 | None:intergenic |
| ACGGAGTGGGTCGCATGTGG+TGG | 0.498003 | 4_3:+22263597 | None:intergenic |
| GGTGGTGGACGGAGTGAAGA+TGG | 0.501161 | 4_3:+22263524 | None:intergenic |
| CACCTCGCTCTCCAAGCCTC+AGG | 0.510859 | 4_3:-22263505 | Msa0634670:intron |
| GAAAGAAGAGGCAACGGAGT+GGG | 0.522053 | 4_3:+22263584 | None:intergenic |
| CATATATCCCATTATATGAC+AGG | 0.525157 | 4_3:+22262023 | None:intergenic |
| AGTTAAAGATGAAATTATTG+AGG | 0.530146 | 4_3:-22261032 | Msa0634670:CDS |
| CATGTGGTGGTGGTGGAAGG+TGG | 0.533257 | 4_3:+22263610 | None:intergenic |
| CTTGATGCTCTTCAATCACA+TGG | 0.535182 | 4_3:-22262054 | Msa0634670:CDS |
| TGCAAGTGTGTAAATTTAGG+TGG | 0.535511 | 4_3:+22262117 | None:intergenic |
| GTGATTGAAGAGCATCAAGT+TGG | 0.536251 | 4_3:+22262058 | None:intergenic |
| TGATTGAAGAGCATCAAGTT+GGG | 0.536427 | 4_3:+22262059 | None:intergenic |
| TATCGTTATGGAAGATGCAA+AGG | 0.541216 | 4_3:-22262381 | Msa0634670:intron |
| GAGAGAGAAAGAAGAGGCAA+CGG | 0.543213 | 4_3:+22263578 | None:intergenic |
| GGAGTGAAGATGGCGCTGCT+GGG | 0.543895 | 4_3:+22263534 | None:intergenic |
| AGAAAGAAGAGGCAACGGAG+TGG | 0.548447 | 4_3:+22263583 | None:intergenic |
| TTGGAGAGCGAGGTGGTGGA+CGG | 0.559403 | 4_3:+22263513 | None:intergenic |
| TAGAAAACGAACCTGAGGCT+TGG | 0.561009 | 4_3:+22263494 | None:intergenic |
| GGCGCTGCTGGGTCGCACGT+GGG | 0.568721 | 4_3:+22263545 | None:intergenic |
| GAGTTTGTGTGCAACAAGCA+AGG | 0.575972 | 4_3:-22262300 | Msa0634670:CDS |
| AGAGAATGTACTGAGAAGTG+TGG | 0.578536 | 4_3:+22263647 | None:intergenic |
| CCCGAACAAATTGTGAAGCA+AGG | 0.587968 | 4_3:-22262218 | Msa0634670:CDS |
| GGATATATGGTTGCTCAGAA+GGG | 0.589834 | 4_3:-22262009 | Msa0634670:CDS |
| GCAACGGAGTGGGTCGCATG+TGG | 0.594036 | 4_3:+22263594 | None:intergenic |
| GATGTTAGGAGCAATAGTAG+TGG | 0.605946 | 4_3:-22262339 | Msa0634670:CDS |
| CAAGTGTGTAAATTTAGGTG+GGG | 0.607267 | 4_3:+22262119 | None:intergenic |
| TATATGGTTGCTCAGAAGGG+TGG | 0.613989 | 4_3:-22262006 | Msa0634670:CDS |
| CGCAGGTGAGTCGTCAACAC+AGG | 0.614146 | 4_3:+22261106 | None:intergenic |
| AACCTGAGGCTTGGAGAGCG+AGG | 0.625854 | 4_3:+22263503 | None:intergenic |
| GCACACGAGAGAGAAAGAAG+AGG | 0.627682 | 4_3:+22263572 | None:intergenic |
| CATCACTCTCAATCGAACGC+AGG | 0.676080 | 4_3:+22261089 | None:intergenic |
| CTGAGGCTTGGAGAGCGAGG+TGG | 0.685584 | 4_3:+22263506 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTAAATTTTCGAAATTTTA+GGG | - | chr4_3:22262043-22262062 | Msa0634670:CDS | 10.0% |
| !!! | GTTTAAATTTTCGAAATTTT+AGG | - | chr4_3:22262042-22262061 | Msa0634670:CDS | 15.0% |
| !!! | TATGAATTTTATTATCGTTA+TGG | - | chr4_3:22262332-22262351 | Msa0634670:CDS | 15.0% |
| !! | TTCTTCTTCATCAAAATAAT+TGG | - | chr4_3:22261024-22261043 | Msa0634670:CDS | 20.0% |
| !!! | TCTCCTTTTTCTTTTTAATT+AGG | - | chr4_3:22261284-22261303 | Msa0634670:intron | 20.0% |
| !!! | CTCCTTTTTCTTTTTAATTA+GGG | - | chr4_3:22261285-22261304 | Msa0634670:intron | 20.0% |
| !! | AACCCTAATTAAAAAGAAAA+AGG | + | chr4_3:22261290-22261309 | None:intergenic | 20.0% |
| !!! | TAATTAGGGTTTTTTGATTT+TGG | - | chr4_3:22261299-22261318 | Msa0634670:intron | 20.0% |
| !!! | CAATTGGAGATTATTTTTTT+GGG | - | chr4_3:22261455-22261474 | Msa0634670:intron | 20.0% |
| !!! | AATTGGAGATTATTTTTTTG+GGG | - | chr4_3:22261456-22261475 | Msa0634670:intron | 20.0% |
| !! | ACTAGGTTATAACAAAAAAA+AGG | - | chr4_3:22261678-22261697 | Msa0634670:intron | 20.0% |
| !! | GTTATATACTTGTTTAGTAT+TGG | - | chr4_3:22261712-22261731 | Msa0634670:intron | 20.0% |
| !!! | TTTTGCTTGCAATAATATAT+TGG | - | chr4_3:22261890-22261909 | Msa0634670:intron | 20.0% |
| !! | GAAATTCTTAAACTTGAATT+TGG | - | chr4_3:22262293-22262312 | Msa0634670:CDS | 20.0% |
| !!! | TTTCCATACATTCTAAAAAA+CGG | + | chr4_3:22263123-22263142 | None:intergenic | 20.0% |
| !!! | ATTTATGCATAATTTTGAAC+AGG | - | chr4_3:22263537-22263556 | Msa0634670:CDS | 20.0% |
| !! | AGTTAAAGATGAAATTATTG+AGG | - | chr4_3:22263693-22263712 | Msa0634670:five_prime_UTR | 20.0% |
| ! | TGAATGTAACAGTGTTTAAT+TGG | - | chr4_3:22261333-22261352 | Msa0634670:intron | 25.0% |
| ! | TGGTTGATTGATTATGAAAT+TGG | - | chr4_3:22261353-22261372 | Msa0634670:intron | 25.0% |
| ! | ATTATGAAATTGGCATTATG+AGG | - | chr4_3:22261363-22261382 | Msa0634670:intron | 25.0% |
| !! | AATCACAAAATCGCAAATTT+TGG | + | chr4_3:22261432-22261451 | None:intergenic | 25.0% |
| !!! | GCAATTGGAGATTATTTTTT+TGG | - | chr4_3:22261454-22261473 | Msa0634670:intron | 25.0% |
| !! | ATATACTTGTTTAGTATTGG+AGG | - | chr4_3:22261715-22261734 | Msa0634670:intron | 25.0% |
| !! | TGCCATTTATATGTACATTT+GGG | - | chr4_3:22261795-22261814 | Msa0634670:intron | 25.0% |
| ! | AAGTTTAAGAATTTCATCAG+AGG | + | chr4_3:22262288-22262307 | None:intergenic | 25.0% |
| !! | AAGAATGAAAAGTCTGTTTT+GGG | - | chr4_3:22262907-22262926 | Msa0634670:intron | 25.0% |
| !!! | AGGTCTGATTATTTTTGTTT+TGG | - | chr4_3:22262944-22262963 | Msa0634670:intron | 25.0% |
| !! | AATGTACTCAAATTTTACAC+CGG | - | chr4_3:22263306-22263325 | Msa0634670:intron | 25.0% |
| ! | ATGAACTTGAAGAAAATGAT+TGG | - | chr4_3:22263368-22263387 | Msa0634670:intron | 25.0% |
| ! | TGAACTTGAAGAAAATGATT+GGG | - | chr4_3:22263369-22263388 | Msa0634670:intron | 25.0% |
| ! | TATTTACGTGATAAGTTCTT+TGG | - | chr4_3:22263433-22263452 | Msa0634670:intron | 25.0% |
| ! | CGATTTTGTGATTATGCAAT+TGG | - | chr4_3:22261439-22261458 | Msa0634670:intron | 30.0% |
| CACCAAATTAGTACCAATTT+CGG | + | chr4_3:22261483-22261502 | None:intergenic | 30.0% | |
| TTGTTGATATGAATCTGTTG+AGG | - | chr4_3:22261509-22261528 | Msa0634670:intron | 30.0% | |
| TGTTGATATGAATCTGTTGA+GGG | - | chr4_3:22261510-22261529 | Msa0634670:intron | 30.0% | |
| TTGGTTCATTGTGTAATTCA+AGG | - | chr4_3:22261576-22261595 | Msa0634670:intron | 30.0% | |
| TAGTTATTAAAGCAGACACT+AGG | - | chr4_3:22261661-22261680 | Msa0634670:intron | 30.0% | |
| ! | CTGCCATTTATATGTACATT+TGG | - | chr4_3:22261794-22261813 | Msa0634670:intron | 30.0% |
| CACCCAAATGTACATATAAA+TGG | + | chr4_3:22261800-22261819 | None:intergenic | 30.0% | |
| CATTTATATGTACATTTGGG+TGG | - | chr4_3:22261798-22261817 | Msa0634670:intron | 30.0% | |
| AAGACGTAGATTTCATAGTT+TGG | + | chr4_3:22261958-22261977 | None:intergenic | 30.0% | |
| TCAATCAACAATGCATTAGT+AGG | - | chr4_3:22262233-22262252 | Msa0634670:CDS | 30.0% | |
| TGTAGTGTCTAAATTTGAAG+AGG | - | chr4_3:22262565-22262584 | Msa0634670:intron | 30.0% | |
| GTAGTGTCTAAATTTGAAGA+GGG | - | chr4_3:22262566-22262585 | Msa0634670:intron | 30.0% | |
| TAGTGTCTAAATTTGAAGAG+GGG | - | chr4_3:22262567-22262586 | Msa0634670:intron | 30.0% | |
| AATCAGAACCTGTCATATAA+TGG | - | chr4_3:22262694-22262713 | Msa0634670:intron | 30.0% | |
| ATCAGAACCTGTCATATAAT+GGG | - | chr4_3:22262695-22262714 | Msa0634670:intron | 30.0% | |
| CATATATCCCATTATATGAC+AGG | + | chr4_3:22262705-22262724 | None:intergenic | 30.0% | |
| ! | CTGTCATATAATGGGATATA+TGG | - | chr4_3:22262703-22262722 | Msa0634670:intron | 30.0% |
| TTCAGCATATAACATTGGAT+CGG | + | chr4_3:22262867-22262886 | None:intergenic | 30.0% | |
| TCGTATTCAGCATATAACAT+TGG | + | chr4_3:22262872-22262891 | None:intergenic | 30.0% | |
| ! | GAAGAATGAAAAGTCTGTTT+TGG | - | chr4_3:22262906-22262925 | Msa0634670:intron | 30.0% |
| ! | TATCCGTTGTGTATATTTTC+TGG | - | chr4_3:22263013-22263032 | Msa0634670:intron | 30.0% |
| ! | ATCCGTTGTGTATATTTTCT+GGG | - | chr4_3:22263014-22263033 | Msa0634670:intron | 30.0% |
| CAAATATAATGGTCTGTGAA+TGG | + | chr4_3:22263048-22263067 | None:intergenic | 30.0% | |
| CATTCACAGACCATTATATT+TGG | - | chr4_3:22263046-22263065 | Msa0634670:intron | 30.0% | |
| AAACAATCGAGTCATATAAG+TGG | - | chr4_3:22263089-22263108 | Msa0634670:intron | 30.0% | |
| AACAATCGAGTCATATAAGT+GGG | - | chr4_3:22263090-22263109 | Msa0634670:intron | 30.0% | |
| !!! | GAACCGTTTTTTAGAATGTA+TGG | - | chr4_3:22263117-22263136 | Msa0634670:intron | 30.0% |
| TGTAAAGAAAACACCATTTC+TGG | - | chr4_3:22263267-22263286 | Msa0634670:intron | 30.0% | |
| GAACTTATCACGTAAATATG+CGG | + | chr4_3:22263431-22263450 | None:intergenic | 30.0% | |
| AAAGATGAAATTATTGAGGC+TGG | - | chr4_3:22263697-22263716 | Msa0634670:five_prime_UTR | 30.0% | |
| AGTGTTGTGAAACCATTGTT+AGG | - | chr4_3:22261394-22261413 | Msa0634670:intron | 35.0% | |
| GTGTTGTGAAACCATTGTTA+GGG | - | chr4_3:22261395-22261414 | Msa0634670:intron | 35.0% | |
| !!! | ATTTTTTTGGGGTCCGAAAT+TGG | - | chr4_3:22261467-22261486 | Msa0634670:intron | 35.0% |
| GTCCGAAATTGGTACTAATT+TGG | - | chr4_3:22261478-22261497 | Msa0634670:intron | 35.0% | |
| !! | CAAAACAATCTGGCTTGTTT+GGG | + | chr4_3:22261559-22261578 | None:intergenic | 35.0% |
| CACAATGAACCAAAACAATC+TGG | + | chr4_3:22261569-22261588 | None:intergenic | 35.0% | |
| AACACAATTGAGCTACTTCA+AGG | - | chr4_3:22261630-22261649 | Msa0634670:intron | 35.0% | |
| TATAAATGGCAGCACACAAA+TGG | + | chr4_3:22261786-22261805 | None:intergenic | 35.0% | |
| TCTTCCTAAGACAAGAAAGA+AGG | + | chr4_3:22261867-22261886 | None:intergenic | 35.0% | |
| TCTTTCTTGTCTTAGGAAGA+TGG | - | chr4_3:22261867-22261886 | Msa0634670:intron | 35.0% | |
| TTTCATAGTTTGGCTAGGTA+TGG | + | chr4_3:22261948-22261967 | None:intergenic | 35.0% | |
| GTAGATTTCATAGTTTGGCT+AGG | + | chr4_3:22261953-22261972 | None:intergenic | 35.0% | |
| !!! | TCGAAATTTTAGGGTTGTCA+TGG | - | chr4_3:22262052-22262071 | Msa0634670:CDS | 35.0% |
| GTATTCTACTTCACTGGAAT+CGG | + | chr4_3:22262102-22262121 | None:intergenic | 35.0% | |
| ATCTGTGTATTCTACTTCAC+TGG | + | chr4_3:22262108-22262127 | None:intergenic | 35.0% | |
| TGATGAATCAGTTCAACAAG+AGG | - | chr4_3:22262208-22262227 | Msa0634670:CDS | 35.0% | |
| GATGAATCAGTTCAACAAGA+GGG | - | chr4_3:22262209-22262228 | Msa0634670:CDS | 35.0% | |
| ACAATGCATTAGTAGGTGAA+AGG | - | chr4_3:22262240-22262259 | Msa0634670:CDS | 35.0% | |
| AAGAATTTCATCAGAGGCAA+TGG | + | chr4_3:22262282-22262301 | None:intergenic | 35.0% | |
| TATCGTTATGGAAGATGCAA+AGG | - | chr4_3:22262344-22262363 | Msa0634670:CDS | 35.0% | |
| ! | AAAGGTTTTGCCATTAGGAA+AGG | - | chr4_3:22262362-22262381 | Msa0634670:CDS | 35.0% |
| TGTACGTTACAAAGCCAAAA+AGG | - | chr4_3:22262535-22262554 | Msa0634670:intron | 35.0% | |
| GTACGTTACAAAGCCAAAAA+GGG | - | chr4_3:22262536-22262555 | Msa0634670:intron | 35.0% | |
| TACGTTACAAAGCCAAAAAG+GGG | - | chr4_3:22262537-22262556 | Msa0634670:intron | 35.0% | |
| ATTTAGGTGGGGTTAATTCA+TGG | + | chr4_3:22262598-22262617 | None:intergenic | 35.0% | |
| CAAGTGTGTAAATTTAGGTG+GGG | + | chr4_3:22262609-22262628 | None:intergenic | 35.0% | |
| GCAAGTGTGTAAATTTAGGT+GGG | + | chr4_3:22262610-22262629 | None:intergenic | 35.0% | |
| TGCAAGTGTGTAAATTTAGG+TGG | + | chr4_3:22262611-22262630 | None:intergenic | 35.0% | |
| ! | CAGAGATTTTACGATACAGT+GGG | + | chr4_3:22262634-22262653 | None:intergenic | 35.0% |
| ! | TCAGAGATTTTACGATACAG+TGG | + | chr4_3:22262635-22262654 | None:intergenic | 35.0% |
| !! | TGATTGAAGAGCATCAAGTT+GGG | + | chr4_3:22262669-22262688 | None:intergenic | 35.0% |
| ATGCGTGAAGTCATTAAAGA+CGG | - | chr4_3:22262797-22262816 | Msa0634670:intron | 35.0% | |
| GAATACGATGTCAACATTGA+TGG | - | chr4_3:22262884-22262903 | Msa0634670:intron | 35.0% | |
| !!! | TTTTTGTTTTGGCGACGTTT+TGG | - | chr4_3:22262955-22262974 | Msa0634670:intron | 35.0% |
| CACCCAGAAAATATACACAA+CGG | + | chr4_3:22263019-22263038 | None:intergenic | 35.0% | |
| ATATAATGGTCTGTGAATGG+TGG | + | chr4_3:22263045-22263064 | None:intergenic | 35.0% | |
| !! | CATCTGTTACAACTGCTTTT+GGG | + | chr4_3:22263153-22263172 | None:intergenic | 35.0% |
| AATGAGGGAAGCTATTAAAC+AGG | - | chr4_3:22263183-22263202 | Msa0634670:intron | 35.0% | |
| ! | AAAGAAAACACCATTTCTGG+AGG | - | chr4_3:22263270-22263289 | Msa0634670:intron | 35.0% |
| ! | AAGAAAACACCATTTCTGGA+GGG | - | chr4_3:22263271-22263290 | Msa0634670:intron | 35.0% |
| AGAGAATGTACTGAGAAGTG+TGG | + | chr4_3:22261081-22261100 | None:intergenic | 40.0% | |
| AGTGTTAGAAAACGAACCTG+AGG | + | chr4_3:22261239-22261258 | None:intergenic | 40.0% | |
| CCACATCAAAACCCTAACAA+TGG | + | chr4_3:22261409-22261428 | None:intergenic | 40.0% | |
| !! | CCATTGTTAGGGTTTTGATG+TGG | - | chr4_3:22261406-22261425 | Msa0634670:intron | 40.0% |
| GATATGAATCTGTTGAGGGT+TGG | - | chr4_3:22261514-22261533 | Msa0634670:intron | 40.0% | |
| !! | CCAAAACAATCTGGCTTGTT+TGG | + | chr4_3:22261560-22261579 | None:intergenic | 40.0% |
| ! | CCAAACAAGCCAGATTGTTT+TGG | - | chr4_3:22261557-22261576 | Msa0634670:intron | 40.0% |
| ATTGGAGGCAACAATTACGT+TGG | - | chr4_3:22261730-22261749 | Msa0634670:intron | 40.0% | |
| ACCCCAGCGTATATGTTATA+GGG | + | chr4_3:22261824-22261843 | None:intergenic | 40.0% | |
| AACCCCAGCGTATATGTTAT+AGG | + | chr4_3:22261825-22261844 | None:intergenic | 40.0% | |
| AGCACCTTCTTTCTTGTCTT+AGG | - | chr4_3:22261860-22261879 | Msa0634670:intron | 40.0% | |
| TGAAATCTACGTCTTGTGCT+AGG | - | chr4_3:22261963-22261982 | Msa0634670:intron | 40.0% | |
| GGAACACCACAAAGATTGTT+TGG | - | chr4_3:22262073-22262092 | Msa0634670:CDS | 40.0% | |
| TGCATTAGTAGGTGAAAGGT+TGG | - | chr4_3:22262244-22262263 | Msa0634670:CDS | 40.0% | |
| ! | GATGCAAAGGTTTTGCCATT+AGG | - | chr4_3:22262357-22262376 | Msa0634670:CDS | 40.0% |
| CCTAACATCACCTTTCCTAA+TGG | + | chr4_3:22262375-22262394 | None:intergenic | 40.0% | |
| CCATTAGGAAAGGTGATGTT+AGG | - | chr4_3:22262372-22262391 | Msa0634670:intron | 40.0% | |
| GATGTTAGGAGCAATAGTAG+TGG | - | chr4_3:22262386-22262405 | Msa0634670:intron | 40.0% | |
| ! | GAGACATGAAGCACTTATCT+AGG | - | chr4_3:22262453-22262472 | Msa0634670:intron | 40.0% |
| ! | CCTTGCTTCACAATTTGTTC+GGG | + | chr4_3:22262510-22262529 | None:intergenic | 40.0% |
| ! | GCCTTGCTTCACAATTTGTT+CGG | + | chr4_3:22262511-22262530 | None:intergenic | 40.0% |
| ! | CACTACATATCTCCCCTTTT+TGG | + | chr4_3:22262552-22262571 | None:intergenic | 40.0% |
| GGGTGCAAGTGTGTAAATTT+AGG | + | chr4_3:22262614-22262633 | None:intergenic | 40.0% | |
| !! | GTGATTGAAGAGCATCAAGT+TGG | + | chr4_3:22262670-22262689 | None:intergenic | 40.0% |
| CTTGATGCTCTTCAATCACA+TGG | - | chr4_3:22262671-22262690 | Msa0634670:intron | 40.0% | |
| GGATATATGGTTGCTCAGAA+GGG | - | chr4_3:22262716-22262735 | Msa0634670:intron | 40.0% | |
| AGCATATAACATTGGATCGG+TGG | + | chr4_3:22262864-22262883 | None:intergenic | 40.0% | |
| !! | AAAAGTCTGTTTTGGGCTGA+TGG | - | chr4_3:22262914-22262933 | Msa0634670:intron | 40.0% |
| !! | AAAGTCTGTTTTGGGCTGAT+GGG | - | chr4_3:22262915-22262934 | Msa0634670:intron | 40.0% |
| CAACGCAACGCCAAATATAA+TGG | + | chr4_3:22263059-22263078 | None:intergenic | 40.0% | |
| ! | CCATCTGTTACAACTGCTTT+TGG | + | chr4_3:22263154-22263173 | None:intergenic | 40.0% |
| CCAAAAGCAGTTGTAACAGA+TGG | - | chr4_3:22263151-22263170 | Msa0634670:intron | 40.0% | |
| AGATGGAGATGGATCAATGA+GGG | - | chr4_3:22263168-22263187 | Msa0634670:intron | 40.0% | |
| ATAAGCGATGAGATGCATCA+GGG | + | chr4_3:22263213-22263232 | None:intergenic | 40.0% | |
| TTTCCAAAACCCTCCAGAAA+TGG | + | chr4_3:22263283-22263302 | None:intergenic | 40.0% | |
| ! | TTTTACACCGGAGCAATTTG+AGG | - | chr4_3:22263318-22263337 | Msa0634670:intron | 40.0% |
| CAAAACTCCTCAAATTGCTC+CGG | + | chr4_3:22263328-22263347 | None:intergenic | 40.0% | |
| GATAGCTTCACATTGAGATG+TGG | + | chr4_3:22263470-22263489 | None:intergenic | 40.0% | |
| AAGACATATGTCAGAGCGAA+AGG | - | chr4_3:22263502-22263521 | Msa0634670:intron | 40.0% | |
| GATCTCTGCTGTGTAAATCT+TGG | + | chr4_3:22263665-22263684 | None:intergenic | 40.0% | |
| GAGAGAGACGCAAGTGAAAT+TGG | + | chr4_3:22261054-22261073 | None:intergenic | 45.0% | |
| GAGAGAGAAAGAAGAGGCAA+CGG | + | chr4_3:22261150-22261169 | None:intergenic | 45.0% | |
| TAGAAAACGAACCTGAGGCT+TGG | + | chr4_3:22261234-22261253 | None:intergenic | 45.0% | |
| TGGCCCTATAACATATACGC+TGG | - | chr4_3:22261818-22261837 | Msa0634670:intron | 45.0% | |
| GGCCCTATAACATATACGCT+GGG | - | chr4_3:22261819-22261838 | Msa0634670:intron | 45.0% | |
| GCCCTATAACATATACGCTG+GGG | - | chr4_3:22261820-22261839 | Msa0634670:intron | 45.0% | |
| GAGTTTGTGTGCAACAAGCA+AGG | - | chr4_3:22262425-22262444 | Msa0634670:intron | 45.0% | |
| CCCGAACAAATTGTGAAGCA+AGG | - | chr4_3:22262507-22262526 | Msa0634670:intron | 45.0% | |
| GGGATATATGGTTGCTCAGA+AGG | - | chr4_3:22262715-22262734 | Msa0634670:intron | 45.0% | |
| TATATGGTTGCTCAGAAGGG+TGG | - | chr4_3:22262719-22262738 | Msa0634670:intron | 45.0% | |
| TATATTTGGCGTTGCGTTGC+TGG | - | chr4_3:22263060-22263079 | Msa0634670:intron | 45.0% | |
| GCAGTTGTAACAGATGGAGA+TGG | - | chr4_3:22263157-22263176 | Msa0634670:intron | 45.0% | |
| CAGATGGAGATGGATCAATG+AGG | - | chr4_3:22263167-22263186 | Msa0634670:intron | 45.0% | |
| CATAAGCGATGAGATGCATC+AGG | + | chr4_3:22263214-22263233 | None:intergenic | 45.0% | |
| !! | ACACCATTTCTGGAGGGTTT+TGG | - | chr4_3:22263277-22263296 | Msa0634670:intron | 45.0% |
| ! | CGGAGCAATTTGAGGAGTTT+TGG | - | chr4_3:22263326-22263345 | Msa0634670:intron | 45.0% |
| ATACGCGAACAAGTCACTGT+GGG | - | chr4_3:22263402-22263421 | Msa0634670:intron | 45.0% | |
| GAAAGAAGAGGCAACGGAGT+GGG | + | chr4_3:22261144-22261163 | None:intergenic | 50.0% | |
| AGAAAGAAGAGGCAACGGAG+TGG | + | chr4_3:22261145-22261164 | None:intergenic | 50.0% | |
| GCACACGAGAGAGAAAGAAG+AGG | + | chr4_3:22261156-22261175 | None:intergenic | 50.0% | |
| CGGCGTCCAAACAATCTTTG+TGG | + | chr4_3:22262082-22262101 | None:intergenic | 50.0% | |
| AAGGGTGGATACGCTGATGT+AGG | - | chr4_3:22262734-22262753 | Msa0634670:intron | 50.0% | |
| TTTGGGCTGATGGGAGTAGT+AGG | - | chr4_3:22262924-22262943 | Msa0634670:intron | 50.0% | |
| CATCTCATCGCTTATGTGCC+TGG | - | chr4_3:22263218-22263237 | Msa0634670:intron | 50.0% | |
| CGCATTCTTATGCAGATGCC+AGG | + | chr4_3:22263239-22263258 | None:intergenic | 50.0% | |
| CATACGCGAACAAGTCACTG+TGG | - | chr4_3:22263401-22263420 | Msa0634670:intron | 50.0% | |
| CATCACTCTCAATCGAACGC+AGG | + | chr4_3:22263639-22263658 | None:intergenic | 50.0% | |
| ATTTGGCGTTGCGTTGCTGG+AGG | - | chr4_3:22263063-22263082 | Msa0634670:intron | 55.0% | |
| !! | CATGTGGTGGTGGTGGAAGG+TGG | + | chr4_3:22261118-22261137 | None:intergenic | 60.0% |
| !! | TCGCATGTGGTGGTGGTGGA+AGG | + | chr4_3:22261121-22261140 | None:intergenic | 60.0% |
| GGAGTGAAGATGGCGCTGCT+GGG | + | chr4_3:22261194-22261213 | None:intergenic | 60.0% | |
| !! | GGTGGTGGACGGAGTGAAGA+TGG | + | chr4_3:22261204-22261223 | None:intergenic | 60.0% |
| !! | TTGGAGAGCGAGGTGGTGGA+CGG | + | chr4_3:22261215-22261234 | None:intergenic | 60.0% |
| AACCTGAGGCTTGGAGAGCG+AGG | + | chr4_3:22261225-22261244 | None:intergenic | 60.0% | |
| CGCAGGTGAGTCGTCAACAC+AGG | + | chr4_3:22263622-22263641 | None:intergenic | 60.0% | |
| !! | TGGGTCGCATGTGGTGGTGG+TGG | + | chr4_3:22261125-22261144 | None:intergenic | 65.0% |
| GAGTGGGTCGCATGTGGTGG+TGG | + | chr4_3:22261128-22261147 | None:intergenic | 65.0% | |
| ACGGAGTGGGTCGCATGTGG+TGG | + | chr4_3:22261131-22261150 | None:intergenic | 65.0% | |
| GCAACGGAGTGGGTCGCATG+TGG | + | chr4_3:22261134-22261153 | None:intergenic | 65.0% | |
| CGGAGTGAAGATGGCGCTGC+TGG | + | chr4_3:22261195-22261214 | None:intergenic | 65.0% | |
| AGGCTTGGAGAGCGAGGTGG+TGG | + | chr4_3:22261219-22261238 | None:intergenic | 65.0% | |
| CTGAGGCTTGGAGAGCGAGG+TGG | + | chr4_3:22261222-22261241 | None:intergenic | 65.0% | |
| CACCTCGCTCTCCAAGCCTC+AGG | - | chr4_3:22261220-22261239 | Msa0634670:intron | 65.0% | |
| GGCGCTGCTGGGTCGCACGT+GGG | + | chr4_3:22261183-22261202 | None:intergenic | 75.0% | |
| TGGCGCTGCTGGGTCGCACG+TGG | + | chr4_3:22261184-22261203 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 22261024 | 22263723 | 22261024 | ID=Msa0634670;Name=Msa0634670 |
| chr4_3 | mRNA | 22261024 | 22263723 | 22261024 | ID=Msa0634670-mRNA-1;Parent=Msa0634670;Name=Msa0634670-mRNA-1;_AED=0.27;_eAED=0.33;_QI=111|0|0.25|1|0.33|0.5|4|0|215 |
| chr4_3 | exon | 22261024 | 22261188 | 22261024 | ID=Msa0634670-mRNA-1:exon:5769;Parent=Msa0634670-mRNA-1 |
| chr4_3 | exon | 22261996 | 22262160 | 22261996 | ID=Msa0634670-mRNA-1:exon:5768;Parent=Msa0634670-mRNA-1 |
| chr4_3 | exon | 22262182 | 22262389 | 22262182 | ID=Msa0634670-mRNA-1:exon:5767;Parent=Msa0634670-mRNA-1 |
| chr4_3 | exon | 22263506 | 22263723 | 22263506 | ID=Msa0634670-mRNA-1:exon:5766;Parent=Msa0634670-mRNA-1 |
| chr4_3 | five_prime_UTR | 22263613 | 22263723 | 22263613 | ID=Msa0634670-mRNA-1:five_prime_utr;Parent=Msa0634670-mRNA-1 |
| chr4_3 | CDS | 22263506 | 22263612 | 22263506 | ID=Msa0634670-mRNA-1:cds;Parent=Msa0634670-mRNA-1 |
| chr4_3 | CDS | 22262182 | 22262389 | 22262182 | ID=Msa0634670-mRNA-1:cds;Parent=Msa0634670-mRNA-1 |
| chr4_3 | CDS | 22261996 | 22262160 | 22261996 | ID=Msa0634670-mRNA-1:cds;Parent=Msa0634670-mRNA-1 |
| chr4_3 | CDS | 22261024 | 22261188 | 22261024 | ID=Msa0634670-mRNA-1:cds;Parent=Msa0634670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
