AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0635330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635330 MtrunA17_Chr4g0014901 89.760 625 31 6 1 622 1 595 0.0 947
Msa0635330 MtrunA17_Chr8g0385291 65.072 418 134 7 204 617 88 497 0.0 550
Msa0635330 MtrunA17_Chr3g0131071 66.933 375 116 5 234 606 188 556 5.07e-180 522
Msa0635330 MtrunA17_Chr4g0014911 63.689 347 121 2 279 622 121 465 3.12e-152 447
Msa0635330 MtrunA17_Chr2g0293201 52.770 343 154 5 280 617 124 463 7.34e-124 374
Msa0635330 MtrunA17_Chr4g0004981 49.258 337 160 6 280 611 107 437 2.73e-113 346
Msa0635330 MtrunA17_Chr1g0183881 39.578 379 204 9 248 617 101 463 2.36e-93 295
Msa0635330 MtrunA17_Chr7g0243541 41.141 333 143 6 283 611 101 384 8.67e-81 261
Msa0635330 MtrunA17_Chr3g0131581 28.899 218 131 6 292 504 64 262 9.14e-19 86.7
Msa0635330 MtrunA17_Chr8g0385681 32.407 216 126 7 292 504 47 245 1.34e-18 85.9
Msa0635330 MtrunA17_Chr8g0385691 31.019 216 129 7 292 504 44 242 5.69e-18 84.0
Msa0635330 MtrunA17_Chr3g0144911 30.180 222 130 9 297 504 110 320 1.74e-15 79.3
Msa0635330 MtrunA17_Chr1g0155521 27.706 231 143 8 288 504 102 322 5.50e-15 78.6
Msa0635330 MtrunA17_Chr5g0404711 25.877 228 151 6 288 504 66 286 1.27e-14 76.6
Msa0635330 MtrunA17_Chr4g0035391 27.706 231 143 8 288 504 97 317 1.70e-14 76.6
Msa0635330 MtrunA17_Chr4g0035381 25.984 254 163 8 268 504 49 294 3.64e-14 74.7
Msa0635330 MtrunA17_Chr8g0372651 26.695 236 153 7 288 511 69 296 6.79e-13 71.6
Msa0635330 MtrunA17_Chr5g0425421 27.805 205 121 8 294 490 45 230 1.16e-11 66.6
Msa0635330 MtrunA17_Chr3g0144891 25.339 221 142 7 297 504 97 307 3.55e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635330 AT4G09160.2 66.082 342 111 2 283 621 302 641 1.02e-168 496
Msa0635330 AT4G09160.1 66.082 342 111 2 283 621 327 666 1.25e-168 496
Msa0635330 AT4G09160.3 66.082 342 111 2 283 621 302 641 2.04e-168 495
Msa0635330 AT1G72160.1 52.227 494 217 7 131 620 12 490 8.45e-163 475
Msa0635330 AT1G22530.1 55.128 390 153 7 230 617 312 681 5.03e-143 431
Msa0635330 AT1G22530.2 54.962 393 155 7 227 617 275 647 5.09e-143 430
Msa0635330 AT1G72150.1 54.067 418 177 8 205 617 165 572 2.12e-134 405
Msa0635330 AT1G30690.1 47.977 346 167 7 276 617 198 534 1.15e-110 343
Msa0635330 AT1G30690.2 47.977 346 167 7 276 617 198 534 1.15e-110 343
Msa0635330 AT3G51670.1 48.348 333 162 6 283 611 69 395 1.44e-108 333
Msa0635330 AT1G01630.1 28.372 215 136 7 292 504 47 245 3.68e-16 79.3
Msa0635330 AT4G08690.2 27.863 262 158 10 256 509 5 243 2.28e-15 77.8
Msa0635330 AT4G08690.1 27.863 262 158 10 256 509 5 243 2.28e-15 77.8
Msa0635330 AT4G08690.3 27.863 262 158 10 256 509 5 243 2.28e-15 77.8
Msa0635330 AT4G34580.2 26.638 229 148 7 288 504 78 298 3.90e-15 79.0
Msa0635330 AT4G34580.1 26.638 229 148 7 288 504 78 298 3.90e-15 79.0
Msa0635330 AT2G21520.1 28.151 238 147 8 288 511 100 327 4.50e-15 79.0
Msa0635330 AT2G16380.2 29.741 232 141 9 288 506 78 300 5.74e-15 78.6
Msa0635330 AT2G16380.1 29.741 232 141 9 288 506 78 300 5.74e-15 78.6
Msa0635330 AT2G21520.2 28.151 238 147 8 288 511 104 331 5.78e-15 79.0
Msa0635330 AT2G21520.3 28.151 238 147 8 288 511 104 331 5.78e-15 79.0
Msa0635330 AT4G39170.1 29.536 237 145 10 288 511 98 325 6.93e-15 78.6
Msa0635330 AT4G39170.2 29.536 237 145 10 288 511 98 325 7.73e-15 78.2
Msa0635330 AT2G21540.3 27.602 221 137 7 297 504 95 305 6.59e-14 75.1
Msa0635330 AT2G21540.5 27.602 221 137 7 297 504 95 305 6.59e-14 75.1
Msa0635330 AT2G21540.6 27.602 221 137 7 297 504 95 305 7.88e-14 75.1
Msa0635330 AT2G21540.2 27.602 221 137 7 297 504 95 305 7.88e-14 75.1
Msa0635330 AT2G21540.1 27.602 221 137 7 297 504 95 305 7.88e-14 75.1
Msa0635330 AT2G21540.4 27.602 221 137 7 297 504 95 305 7.88e-14 75.1
Msa0635330 AT1G19650.1 27.074 229 142 6 297 511 104 321 1.89e-13 73.9
Msa0635330 AT3G24840.7 26.941 219 139 7 298 504 104 313 8.01e-13 72.0
Msa0635330 AT3G24840.3 26.941 219 139 7 298 504 104 313 8.01e-13 72.0
Msa0635330 AT3G24840.5 26.941 219 139 7 298 504 104 313 8.01e-13 72.0
Msa0635330 AT3G24840.1 26.941 219 139 7 298 504 104 313 8.07e-13 72.0
Msa0635330 AT3G24840.6 26.941 219 139 7 298 504 104 313 8.07e-13 72.0
Msa0635330 AT3G24840.4 26.941 219 139 7 298 504 104 313 8.07e-13 72.0
Msa0635330 AT3G24840.2 26.941 219 139 7 298 504 104 313 8.07e-13 72.0
Msa0635330 AT1G19650.3 27.074 229 142 6 297 511 104 321 3.57e-12 69.3
Msa0635330 AT1G22180.2 26.222 225 142 7 294 513 45 250 6.10e-12 67.8
Msa0635330 AT1G22180.4 26.222 225 142 7 294 513 45 250 6.10e-12 67.8
Msa0635330 AT1G75370.1 28.440 218 139 6 297 504 113 323 7.59e-11 65.5

Find 155 sgRNAs with CRISPR-Local

Find 271 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTATTGTGAAGGTTAT+TGG 0.172143 4_3:+23803219 Msa0635330:three_prime_UTR
AAAAGAGTGATATTAGTATT+AGG 0.199037 4_3:-23799768 None:intergenic
CCGTTGGTGGATTCAGTCTT+TGG 0.211381 4_3:+23801526 Msa0635330:CDS
CATACCCATTTCTGAGTAAA+AGG 0.214711 4_3:+23803146 Msa0635330:exon
ACCTGTTTGGCTACGAATTC+AGG 0.215816 4_3:-23801701 None:intergenic
ACTTTCTTCTCAGCAGCTTT+AGG 0.232800 4_3:-23800363 None:intergenic
CTTTCACATTGACAAGAAAA+AGG 0.255187 4_3:+23803169 Msa0635330:three_prime_UTR
GGTTGTTCACCTTCCGTAAC+TGG 0.274628 4_3:-23800567 None:intergenic
AGCAGTAGTTGAAGAGAAAA+AGG 0.282779 4_3:+23800308 Msa0635330:CDS
TTGTTTCGCACCTCAGAAAC+TGG 0.292375 4_3:-23802662 None:intergenic
GAAAAGGGTTTCAGCAGATT+TGG 0.294256 4_3:-23801934 None:intergenic
GTTGGAGACAATTGGGCTTT+GGG 0.295539 4_3:-23799657 None:intergenic
TACCAGAGGAAGTTGAAATA+TGG 0.296782 4_3:+23800631 Msa0635330:CDS
AAGAGCAAATTTGTATTTGC+TGG 0.298998 4_3:+23801906 Msa0635330:CDS
AGTTGGAGACAATTGGGCTT+TGG 0.313363 4_3:-23799658 None:intergenic
TTTGGGGTTCAGCAGCCATT+AGG 0.316396 4_3:-23799798 None:intergenic
ACATTATTGTGAAGGTTATT+GGG 0.322782 4_3:+23803220 Msa0635330:three_prime_UTR
AAAGAGTGATATTAGTATTA+GGG 0.325236 4_3:-23799767 None:intergenic
TATCTGTAATTTAAGGAATT+CGG 0.328551 4_3:+23801332 Msa0635330:intron
TGCAGAAAAGCACTTTGGTT+TGG 0.329632 4_3:+23802905 Msa0635330:intron
GAGCAAGTGCCGGTTAAATA+TGG 0.332028 4_3:+23802545 Msa0635330:CDS
TGATATTAGTATTAGGGTTA+AGG 0.332351 4_3:-23799761 None:intergenic
TCAGGTTCAGCTACTTTGAC+TGG 0.347361 4_3:-23800195 None:intergenic
CTCAGAAATGGGTATGGTCT+TGG 0.350428 4_3:-23803139 None:intergenic
TGCTCGATGGAGAACACAAT+TGG 0.352362 4_3:+23803414 Msa0635330:three_prime_UTR
GAGAGAGAGTGAGATGGGTT+TGG 0.360020 4_3:-23799681 None:intergenic
AAGAAGATCTTGGAACTGAT+TGG 0.360586 4_3:+23801372 Msa0635330:CDS
ATATTAGGGTAATGAGAAAA+TGG 0.364859 4_3:-23799718 None:intergenic
AAGAAAGGACTTACTTGAAA+AGG 0.368124 4_3:-23801950 None:intergenic
TGATCAAACAAACCGTGATT+TGG 0.374965 4_3:+23800745 Msa0635330:CDS
CCCCATATTTCAACTTCCTC+TGG 0.377231 4_3:-23800633 None:intergenic
GCAGAAAAGCACTTTGGTTT+GGG 0.378301 4_3:+23802906 Msa0635330:intron
ACTCCTTTCATCAGCTAGTA+AGG 0.378846 4_3:-23800661 None:intergenic
TGCTCTTAGTCCTTTGTGTC+AGG 0.380418 4_3:-23801890 None:intergenic
TTGGGGTTCAGCAGCCATTA+GGG 0.381348 4_3:-23799797 None:intergenic
GCGCTTCTTCAAGAAGATCT+TGG 0.381509 4_3:+23801362 Msa0635330:CDS
ATGGTGAGTATAACCTTTCC+AGG 0.382838 4_3:-23803075 None:intergenic
ACCTTCAAAGTCGGCGAACC+TGG 0.382877 4_3:+23803057 Msa0635330:CDS
AATTCTCCTGGACTTCTTGT+TGG 0.387753 4_3:+23801620 Msa0635330:CDS
GAGTGAGATGGGTTTGGAGT+TGG 0.388809 4_3:-23799675 None:intergenic
AGTCTTTGGAGAAAAGTGTT+AGG 0.391795 4_3:+23801540 Msa0635330:CDS
GGTTTGGAGTTGGAGACAAT+TGG 0.397114 4_3:-23799665 None:intergenic
TCAGCAACGGGTTCCGCAAC+AGG 0.400035 4_3:-23800588 None:intergenic
GTTGTGGCCACTTCTTCAGC+AGG 0.401875 4_3:-23799823 None:intergenic
CTCAGTCCTCCATATTTAAC+CGG 0.412116 4_3:-23802554 None:intergenic
CTCAGCAGCTTTAGGTTCCT+CGG 0.416167 4_3:-23800355 None:intergenic
GCTCGATGGAGAACACAATT+GGG 0.418706 4_3:+23803415 Msa0635330:three_prime_UTR
AAGGAGAATTCAAACCTGTT+TGG 0.420405 4_3:-23801714 None:intergenic
CCTTAAAATCCCTTGCTCTC+AGG 0.422195 4_3:-23800704 None:intergenic
ACCAGAGGAAGTTGAAATAT+GGG 0.422351 4_3:+23800632 Msa0635330:CDS
CTTGGATGTTTGGTTATCAA+TGG 0.426352 4_3:-23803094 None:intergenic
CTGTGATAATCCAGAAGAAC+AGG 0.427354 4_3:+23802998 Msa0635330:CDS
TCCAGGTTCGCCGACTTTGA+AGG 0.428840 4_3:-23803058 None:intergenic
TCAGCTACTTTGACTGGGGC+AGG 0.435003 4_3:-23800189 None:intergenic
TGCTGATGAGGCGGAGAAGC+CGG 0.438723 4_3:+23799963 Msa0635330:CDS
TTTGTTTCAAGTATGGGGTT+GGG 0.439847 4_3:+23803300 Msa0635330:three_prime_UTR
CATAGTATCTGTTCCAGTTA+CGG 0.441670 4_3:+23800554 Msa0635330:CDS
GGGAAGTAAGAGTTGTGGAT+TGG 0.444817 4_3:+23802926 Msa0635330:CDS
AGAAGATCTTGGAACTGATT+GGG 0.446509 4_3:+23801373 Msa0635330:CDS
TTCTCCGCCTCATCAGCAAC+AGG 0.448387 4_3:-23799958 None:intergenic
GTTTGGAGTTGGAGACAATT+GGG 0.448544 4_3:-23799664 None:intergenic
TATTTAACCGGCACTTGCTC+AGG 0.449531 4_3:-23802542 None:intergenic
AACTGTTGTAGAACCTGAAA+AGG 0.454487 4_3:+23800392 Msa0635330:CDS
AACTGTTGTAGAACCTGAAA+AGG 0.454487 4_3:+23800434 Msa0635330:CDS
TTGATAGTAACCTCAGTAGC+AGG 0.455020 4_3:-23802611 None:intergenic
GTAACCTCCACTTCAGCAAC+GGG 0.461927 4_3:-23800600 None:intergenic
TCCTGAATTCGTAGCCAAAC+AGG 0.462520 4_3:+23801700 Msa0635330:CDS
ATATAGAGAGAGAGTGAGAT+GGG 0.462828 4_3:-23799686 None:intergenic
AAACTCGACTTTGCTCCATC+TGG 0.468423 4_3:+23801563 Msa0635330:CDS
GAACCAAGTTTGTCCGTTGG+TGG 0.478851 4_3:+23801513 Msa0635330:CDS
AGAAAGGACTTACTTGAAAA+GGG 0.480833 4_3:-23801949 None:intergenic
ATCAGTGGTGGCAGCGGTAA+CGG 0.481703 4_3:-23799917 None:intergenic
CAGGTTCAGCTACTTTGACT+GGG 0.483049 4_3:-23800194 None:intergenic
TTCTTACCAACAAGAAGTCC+AGG 0.484320 4_3:-23801626 None:intergenic
TACCGCTGCCACCACTGATA+AGG 0.488762 4_3:+23799921 Msa0635330:CDS
CGAAGAAAAGAAAGAAGAAG+TGG 0.488934 4_3:+23800266 Msa0635330:CDS
GGCGGAGAAGCCGGCAGAAG+TGG 0.492001 4_3:+23799972 Msa0635330:CDS
TGTTGTTGAGAAAGAACAAC+AGG 0.496108 4_3:+23799858 Msa0635330:CDS
TTCTCAAATTCCTGAGAGCA+AGG 0.496214 4_3:+23800694 Msa0635330:CDS
AGGACTGATCATCCTAGAAA+AGG 0.500229 4_3:-23801865 None:intergenic
AATCCACCAACGGACAAACT+TGG 0.510917 4_3:-23801516 None:intergenic
ACTTTGACTGGGGCAGGTGG+AGG 0.511688 4_3:-23800183 None:intergenic
CACTGCTGACCCTGCTACTG+AGG 0.513798 4_3:+23802601 Msa0635330:CDS
TATTGTGAAGGTTATTGGGT+GGG 0.521406 4_3:+23803224 Msa0635330:three_prime_UTR
AAGGGTTTCAGCAGATTTGG+AGG 0.522395 4_3:-23801931 None:intergenic
GAATGTGCAGAAAAGCACTT+TGG 0.525162 4_3:+23802900 Msa0635330:intron
ACATCAGCCACCACTTCTGC+CGG 0.527114 4_3:-23799982 None:intergenic
CAAAGTCGGCGAACCTGGAA+AGG 0.527982 4_3:+23803062 Msa0635330:CDS
AATATAGAGAGAGAGTGAGA+TGG 0.530357 4_3:-23799687 None:intergenic
TGCGGAACCCGTTGCTGAAG+TGG 0.531376 4_3:+23800593 Msa0635330:CDS
TGAATGAAACCTTTGCTCGA+TGG 0.532359 4_3:+23803401 Msa0635330:three_prime_UTR
TCAATATTCTTAAATTAATG+TGG 0.536779 4_3:+23803354 Msa0635330:three_prime_UTR
TGCTGATCCTGTTGCTGATG+AGG 0.538781 4_3:+23799951 Msa0635330:CDS
GCTACTTTGACTGGGGCAGG+TGG 0.540574 4_3:-23800186 None:intergenic
GACTGGGGCAGGTGGAGGAG+CGG 0.542120 4_3:-23800178 None:intergenic
TTCCTTATCAGTGGTGGCAG+CGG 0.542972 4_3:-23799923 None:intergenic
TCTCAAATTCCTGAGAGCAA+GGG 0.545066 4_3:+23800695 Msa0635330:CDS
GGCAGAAGTGGTGGCTGATG+TGG 0.552175 4_3:+23799984 Msa0635330:CDS
GCTTTCTTGAATAGCTTCAA+CGG 0.554411 4_3:-23800532 None:intergenic
GGCAGCGGTAACGGCAGCAG+CGG 0.557182 4_3:-23799908 None:intergenic
TAAAGCTGCTGAGAAGAAAG+TGG 0.559749 4_3:+23800365 Msa0635330:CDS
CTCGATGGAGAACACAATTG+GGG 0.564076 4_3:+23803416 Msa0635330:three_prime_UTR
TGAAAAGGAGGAGAAGAAAG+TGG 0.565300 4_3:+23800407 Msa0635330:CDS
TCAACTTCCTCTGGTACAGT+AGG 0.566190 4_3:-23800624 None:intergenic
ACCTGAAAAGGAGAAGAAAG+TGG 0.567059 4_3:+23800446 Msa0635330:CDS
TTCCCTTACTAGCTGATGAA+AGG 0.567165 4_3:+23800658 Msa0635330:CDS
GGTCAATAACATTATTGTGA+AGG 0.567851 4_3:+23803212 Msa0635330:three_prime_UTR
TTAGTCCTTTGTGTCAGGAA+AGG 0.568368 4_3:-23801885 None:intergenic
CTCCTTTCATCAGCTAGTAA+GGG 0.569186 4_3:-23800660 None:intergenic
AGTAACCTCCACTTCAGCAA+CGG 0.570780 4_3:-23800601 None:intergenic
GGAGAAGCCGGCAGAAGTGG+TGG 0.572616 4_3:+23799975 Msa0635330:CDS
AGGTTCAGCTACTTTGACTG+GGG 0.574128 4_3:-23800193 None:intergenic
TAATACCTTTCGCCAAATCA+CGG 0.574327 4_3:-23800757 None:intergenic
TATGGAGGACTGAGCAGAGA+GGG 0.576578 4_3:+23802563 Msa0635330:CDS
GTGTATCCATCTTCAGCACT+AGG 0.577666 4_3:-23802976 None:intergenic
AACAGTTTCAGAGCTTGTTG+TGG 0.578262 4_3:-23799839 None:intergenic
GAGAAAGAACAACAGGCTGA+TGG 0.581051 4_3:+23799865 Msa0635330:CDS
ACAAACCGTGATTTGGCGAA+AGG 0.583208 4_3:+23800752 Msa0635330:CDS
TTGTGTTCTCCATCGAGCAA+AGG 0.583320 4_3:-23803410 None:intergenic
TATAGCTCCTGAGCAAGTGC+CGG 0.584482 4_3:+23802535 Msa0635330:CDS
TGTTGAGTTCCCAGTTTCTG+AGG 0.586778 4_3:+23802652 Msa0635330:CDS
AGAGAACCAAGTTTGTCCGT+TGG 0.587433 4_3:+23801510 Msa0635330:CDS
TGTTGTTGTTGATGAAAGCA+AGG 0.593245 4_3:+23800032 Msa0635330:CDS
TTATTGTGAAGGTTATTGGG+TGG 0.594403 4_3:+23803223 Msa0635330:three_prime_UTR
AAAGGAGGAGAAGAAAGTGG+AGG 0.596371 4_3:+23800410 Msa0635330:CDS
TTTGTGCCTAGTGCTGAAGA+TGG 0.598417 4_3:+23802970 Msa0635330:CDS
AACAGCTTCCTTATCAGTGG+TGG 0.602369 4_3:-23799929 None:intergenic
TGTTGTAGAACCTGAAAAGG+AGG 0.605095 4_3:+23800395 Msa0635330:CDS
GTGGATTGGAATGTGAGCTA+TGG 0.605535 4_3:+23802940 Msa0635330:CDS
TGTTTCGCACCTCAGAAACT+GGG 0.606381 4_3:-23802661 None:intergenic
GGTTTGGGAAGTAAGAGTTG+TGG 0.609162 4_3:+23802921 Msa0635330:CDS
ACTGATGGTACTGACAAAGA+AGG 0.609286 4_3:+23801410 Msa0635330:CDS
ATTAGCAACACCTTCAAAGT+CGG 0.613493 4_3:+23803048 Msa0635330:CDS
ACAAGAGTAGAGATACCAGA+TGG 0.618415 4_3:-23801578 None:intergenic
CCAGAGGAAGTTGAAATATG+GGG 0.622025 4_3:+23800633 Msa0635330:CDS
AGCAACAGCTTCCTTATCAG+TGG 0.627494 4_3:-23799932 None:intergenic
TGATAGTAACCTCAGTAGCA+GGG 0.629245 4_3:-23802610 None:intergenic
CTCAGTAGCAGGGTCAGCAG+TGG 0.635942 4_3:-23802600 None:intergenic
AACGGCAGCAGCGGTAACAG+CGG 0.636299 4_3:-23799899 None:intergenic
TGATCATCCTAGAAAAGGCA+AGG 0.637343 4_3:-23801860 None:intergenic
CAAGTGCCGGTTAAATATGG+AGG 0.638383 4_3:+23802548 Msa0635330:CDS
AGCTGCTGAGAAGAAAGTGG+AGG 0.643861 4_3:+23800368 Msa0635330:CDS
TGATCCTGTTGCTGATGAGG+CGG 0.646157 4_3:+23799954 Msa0635330:CDS
GTATCTGTTCCAGTTACGGA+AGG 0.647645 4_3:+23800558 Msa0635330:CDS
GGAACCCGTTGCTGAAGTGG+AGG 0.658824 4_3:+23800596 Msa0635330:CDS
TCAGTCCTTTCCTGACACAA+AGG 0.662629 4_3:+23801880 Msa0635330:CDS
GGTTACTCCTACTGTACCAG+AGG 0.664697 4_3:+23800617 Msa0635330:CDS
TGAAAAGGAGAAGAAAGTGG+AGG 0.666714 4_3:+23800449 Msa0635330:CDS
GGAAGGTGAACAACCTGTTG+CGG 0.668549 4_3:+23800575 Msa0635330:CDS
GCTGCAAGTACCGAAGAAGA+CGG 0.668808 4_3:+23800501 Msa0635330:CDS
CCAAAGACTGAATCCACCAA+CGG 0.675567 4_3:-23801526 None:intergenic
AGTCAAAGTAGCTGAACCTG+AGG 0.676379 4_3:+23800197 Msa0635330:CDS
AGCAGCTTTAGGTTCCTCGG+AGG 0.718138 4_3:-23800352 None:intergenic
ATATGGAGGACTGAGCAGAG+AGG 0.746849 4_3:+23802562 Msa0635330:CDS
GAAAAGGCAAGGTACCACCA+AGG 0.749307 4_3:-23801849 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATATAAGCAAAA+AGG - chr4_3:23801231-23801250 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTACTGA+AGG + chr4_3:23801264-23801283 Msa0635330:intron 10.0%
!!! TTTTTTTTTTTTTTACTGAA+GGG + chr4_3:23801265-23801284 Msa0635330:intron 10.0%
!! TTAACTCATATTAGAAATTT+AGG + chr4_3:23800835-23800854 Msa0635330:intron 15.0%
!! TTTATAGATCATACAAAAAA+AGG - chr4_3:23800972-23800991 None:intergenic 15.0%
!! TTCTTATATTTCATTCTAAA+GGG - chr4_3:23801151-23801170 None:intergenic 15.0%
!! TTTCTTATATTTCATTCTAA+AGG - chr4_3:23801152-23801171 None:intergenic 15.0%
!! AAAAAAAATTCATATGTACT+TGG - chr4_3:23801204-23801223 None:intergenic 15.0%
!!! TTTTTTTTTTTTTACTGAAG+GGG + chr4_3:23801266-23801285 Msa0635330:intron 15.0%
!! ATTAATATGATTGCTTAATT+TGG + chr4_3:23801782-23801801 Msa0635330:intron 15.0%
!!! GTTACTTATATTCTTTTATA+GGG + chr4_3:23803246-23803265 Msa0635330:three_prime_UTR 15.0%
!!! ATTATATTTTGTTTCAAGTA+TGG + chr4_3:23803293-23803312 Msa0635330:three_prime_UTR 15.0%
!!! TTATATTTTGTTTCAAGTAT+GGG + chr4_3:23803294-23803313 Msa0635330:three_prime_UTR 15.0%
!! TCAATATTCTTAAATTAATG+TGG + chr4_3:23803354-23803373 Msa0635330:three_prime_UTR 15.0%
!! AGAAAGAAAAAGTGATATTA+GGG - chr4_3:23799735-23799754 None:intergenic 20.0%
!! AAGAAAGAAAAAGTGATATT+AGG - chr4_3:23799736-23799755 None:intergenic 20.0%
!! AAAGAGTGATATTAGTATTA+GGG - chr4_3:23799770-23799789 None:intergenic 20.0%
!! AAAAGAGTGATATTAGTATT+AGG - chr4_3:23799771-23799790 None:intergenic 20.0%
!!! TCATACAAAAAAAGGTTTTA+CGG - chr4_3:23800964-23800983 None:intergenic 20.0%
!!! ACTCTTTTCATAAGTTATAT+TGG + chr4_3:23800991-23801010 Msa0635330:intron 20.0%
!! TATATAAGTTTCTTACAAAC+AGG + chr4_3:23801050-23801069 Msa0635330:intron 20.0%
!!! GTTTGTTAATAATTTGTTAC+TGG + chr4_3:23801291-23801310 Msa0635330:intron 20.0%
!! CTTATTGTATCTGTAATTTA+AGG + chr4_3:23801325-23801344 Msa0635330:intron 20.0%
!! TATCTGTAATTTAAGGAATT+CGG + chr4_3:23801332-23801351 Msa0635330:intron 20.0%
!! CAAAAACATTGTAATAAACA+GGG - chr4_3:23801439-23801458 None:intergenic 20.0%
!! ATTATTATTACCAACTTACA+AGG + chr4_3:23802054-23802073 Msa0635330:intron 20.0%
!!! AAATTTAAAACCTTGTAAGT+TGG - chr4_3:23802067-23802086 None:intergenic 20.0%
!!! ATCAATTTTTCTCAATATCA+GGG - chr4_3:23802175-23802194 None:intergenic 20.0%
!! AGCTCTTATTGATAAATATT+TGG + chr4_3:23802501-23802520 Msa0635330:intron 20.0%
!! ATAAGATTGTATATCAAACA+AGG - chr4_3:23802688-23802707 None:intergenic 20.0%
!! AATTATGAATATAAGAATCG+TGG - chr4_3:23802860-23802879 None:intergenic 20.0%
!!! GGTTACTTATATTCTTTTAT+AGG + chr4_3:23803245-23803264 Msa0635330:three_prime_UTR 20.0%
!!! TATATTTTGTTTCAAGTATG+GGG + chr4_3:23803295-23803314 Msa0635330:three_prime_UTR 20.0%
! ATATTAGGGTAATGAGAAAA+TGG - chr4_3:23799721-23799740 None:intergenic 25.0%
! TGATATTAGTATTAGGGTTA+AGG - chr4_3:23799764-23799783 None:intergenic 25.0%
!!! TTTTAAAGAAGAAACTAACG+TGG + chr4_3:23800071-23800090 Msa0635330:CDS 25.0%
! AAAAAGGTTGAAGAAGAAAA+AGG + chr4_3:23800324-23800343 Msa0635330:CDS 25.0%
! CCAAAAACATTGTAATAAAC+AGG - chr4_3:23801440-23801459 None:intergenic 25.0%
!! CCTGTTTATTACAATGTTTT+TGG + chr4_3:23801437-23801456 Msa0635330:CDS 25.0%
! AATGATCTTAAAAATTCTCC+TGG + chr4_3:23801608-23801627 Msa0635330:CDS 25.0%
!!! TATGATGAAAGCACTAAAAA+AGG - chr4_3:23801978-23801997 None:intergenic 25.0%
!! AAGCAATTTAAAACTTCATG+TGG - chr4_3:23802129-23802148 None:intergenic 25.0%
!! CATCAATTTTTCTCAATATC+AGG - chr4_3:23802176-23802195 None:intergenic 25.0%
!! TAAGATTTTATAGGAAGTCT+AGG - chr4_3:23802351-23802370 None:intergenic 25.0%
!! AGTATCTCGTAAGATTTTAT+AGG - chr4_3:23802360-23802379 None:intergenic 25.0%
!! TACTACTACAATTGTAGTTT+TGG + chr4_3:23802376-23802395 Msa0635330:intron 25.0%
!!! GTATTTGCAGACAATTTTTT+TGG + chr4_3:23802424-23802443 Msa0635330:intron 25.0%
! CTTAAATATGATCCTTATGA+TGG + chr4_3:23802711-23802730 Msa0635330:intron 25.0%
!! CACAATTTAAAACCATCATA+AGG - chr4_3:23802726-23802745 None:intergenic 25.0%
!!! CTTATGATGGTTTTAAATTG+TGG + chr4_3:23802724-23802743 Msa0635330:intron 25.0%
! TTTCACATTGACAAGAAAAA+GGG + chr4_3:23803170-23803189 Msa0635330:three_prime_UTR 25.0%
! AACATTATTGTGAAGGTTAT+TGG + chr4_3:23803219-23803238 Msa0635330:three_prime_UTR 25.0%
! ACATTATTGTGAAGGTTATT+GGG + chr4_3:23803220-23803239 Msa0635330:three_prime_UTR 25.0%
!! ATAGGGATATTTTCTTCATT+TGG + chr4_3:23803263-23803282 Msa0635330:three_prime_UTR 25.0%
!! GGTATTTTGTTCTTTTGTAT+TGG + chr4_3:23803375-23803394 Msa0635330:three_prime_UTR 25.0%
!!! ACTCTTTTTTCATACCCTAA+TGG + chr4_3:23799783-23799802 Msa0635330:exon 30.0%
! CACTTCTTCTTTCTTTTCTT+CGG - chr4_3:23800268-23800287 None:intergenic 30.0%
GAAATTTAGGCATGTTTGAA+TGG + chr4_3:23800848-23800867 Msa0635330:intron 30.0%
! TAAGTTATATTGGAGTGCTT+AGG + chr4_3:23801001-23801020 Msa0635330:intron 30.0%
! AAGTTATATTGGAGTGCTTA+GGG + chr4_3:23801002-23801021 Msa0635330:intron 30.0%
TTCCAAAAATCGATGAAGAA+AGG - chr4_3:23801736-23801755 None:intergenic 30.0%
! AGATTTTCATCAATGTTCCT+TGG + chr4_3:23801832-23801851 Msa0635330:intron 30.0%
AAGAGCAAATTTGTATTTGC+TGG + chr4_3:23801906-23801925 Msa0635330:CDS 30.0%
AGAAAGGACTTACTTGAAAA+GGG - chr4_3:23801952-23801971 None:intergenic 30.0%
AAGAAAGGACTTACTTGAAA+AGG - chr4_3:23801953-23801972 None:intergenic 30.0%
!!! ATGTTTTTTAGCCCATAAGA+AGG + chr4_3:23802008-23802027 Msa0635330:intron 30.0%
AATAGCAATATGTGTGTTTG+TGG - chr4_3:23802037-23802056 None:intergenic 30.0%
CAAATATGTGTGTACGTTTA+TGG - chr4_3:23802090-23802109 None:intergenic 30.0%
ATATCAGGGATCATAACAAA+AGG - chr4_3:23802161-23802180 None:intergenic 30.0%
CAAGCAAAACTACAATATCA+AGG - chr4_3:23802324-23802343 None:intergenic 30.0%
!!! GACAATTTTTTTGGACCTTT+AGG + chr4_3:23802433-23802452 Msa0635330:intron 30.0%
ACTGCAAACCTTTATATTGT+GGG + chr4_3:23802763-23802782 Msa0635330:intron 30.0%
! CACATTTTCCCACAATATAA+AGG - chr4_3:23802774-23802793 None:intergenic 30.0%
CTTTATATTGTGGGAAAATG+TGG + chr4_3:23802772-23802791 Msa0635330:intron 30.0%
! AAAGCCTTTTACTCAGAAAT+GGG - chr4_3:23803153-23803172 None:intergenic 30.0%
CTTTCACATTGACAAGAAAA+AGG + chr4_3:23803169-23803188 Msa0635330:three_prime_UTR 30.0%
! GGTGTTTTGTATTCATTACA+AGG + chr4_3:23803191-23803210 Msa0635330:three_prime_UTR 30.0%
GGTCAATAACATTATTGTGA+AGG + chr4_3:23803212-23803231 Msa0635330:three_prime_UTR 30.0%
ATATAGAGAGAGAGTGAGAT+GGG - chr4_3:23799689-23799708 None:intergenic 35.0%
AATATAGAGAGAGAGTGAGA+TGG - chr4_3:23799690-23799709 None:intergenic 35.0%
TGTTGTTGAGAAAGAACAAC+AGG + chr4_3:23799858-23799877 Msa0635330:CDS 35.0%
TGATGTGGAAAAAGAAAAGG+TGG + chr4_3:23799999-23800018 Msa0635330:CDS 35.0%
! TGTTGTTGTTGATGAAAGCA+AGG + chr4_3:23800032-23800051 Msa0635330:CDS 35.0%
!!! AGTGCTTTTTTCTGAACTTC+TGG - chr4_3:23800108-23800127 None:intergenic 35.0%
CGAAGAAAAGAAAGAAGAAG+TGG + chr4_3:23800266-23800285 Msa0635330:CDS 35.0%
AGCAGTAGTTGAAGAGAAAA+AGG + chr4_3:23800308-23800327 Msa0635330:CDS 35.0%
AACTGTTGTAGAACCTGAAA+AGG + chr4_3:23800392-23800411 Msa0635330:CDS 35.0%
AACTGTTGTAGAACCTGAAA+AGG + chr4_3:23800392-23800411 Msa0635330:CDS 35.0%
GCTTTCTTGAATAGCTTCAA+CGG - chr4_3:23800535-23800554 None:intergenic 35.0%
CATAGTATCTGTTCCAGTTA+CGG + chr4_3:23800554-23800573 Msa0635330:CDS 35.0%
TACCAGAGGAAGTTGAAATA+TGG + chr4_3:23800631-23800650 Msa0635330:CDS 35.0%
ACCAGAGGAAGTTGAAATAT+GGG + chr4_3:23800632-23800651 Msa0635330:CDS 35.0%
TGATCAAACAAACCGTGATT+TGG + chr4_3:23800745-23800764 Msa0635330:CDS 35.0%
TAATACCTTTCGCCAAATCA+CGG - chr4_3:23800760-23800779 None:intergenic 35.0%
AGGGATTGCTAACTAACTTT+GGG - chr4_3:23801132-23801151 None:intergenic 35.0%
AAGGGATTGCTAACTAACTT+TGG - chr4_3:23801133-23801152 None:intergenic 35.0%
AAGAAGATCTTGGAACTGAT+TGG + chr4_3:23801372-23801391 Msa0635330:CDS 35.0%
AGAAGATCTTGGAACTGATT+GGG + chr4_3:23801373-23801392 Msa0635330:CDS 35.0%
!! GACAAAGTTGTTTTCACTGA+TGG + chr4_3:23801395-23801414 Msa0635330:CDS 35.0%
!!! CAATGTTTTTGGTGAGTTTG+AGG + chr4_3:23801448-23801467 Msa0635330:CDS 35.0%
! TTTTGGTGAGTTTGAGGATA+AGG + chr4_3:23801454-23801473 Msa0635330:CDS 35.0%
!! AGTCTTTGGAGAAAAGTGTT+AGG + chr4_3:23801540-23801559 Msa0635330:CDS 35.0%
AAGGAGAATTCAAACCTGTT+TGG - chr4_3:23801717-23801736 None:intergenic 35.0%
!!! CTCCTTTCTTCATCGATTTT+TGG + chr4_3:23801731-23801750 Msa0635330:intron 35.0%
!!! TCGATTTTTGGAACATGTTG+TGG + chr4_3:23801743-23801762 Msa0635330:intron 35.0%
! TTTTCATCAATGTTCCTTGG+TGG + chr4_3:23801835-23801854 Msa0635330:CDS 35.0%
GCACTAAAAAAGGTGAAGAA+AGG - chr4_3:23801968-23801987 None:intergenic 35.0%
TTAATAGCGTATGCTCCTAA+AGG - chr4_3:23802451-23802470 None:intergenic 35.0%
!! TCAACAGCATGTTTTGTTGT+TGG - chr4_3:23802638-23802657 None:intergenic 35.0%
TTAAATTGTGGTCTATGTCG+TGG + chr4_3:23802736-23802755 Msa0635330:intron 35.0%
CACTGCAAACCTTTATATTG+TGG + chr4_3:23802762-23802781 Msa0635330:intron 35.0%
ATTAGCAACACCTTCAAAGT+CGG + chr4_3:23803048-23803067 Msa0635330:CDS 35.0%
CTTGGATGTTTGGTTATCAA+TGG - chr4_3:23803097-23803116 None:intergenic 35.0%
! GCTTCTTTTTCTTGGATGTT+TGG - chr4_3:23803107-23803126 None:intergenic 35.0%
! GTAAAGCAGCTTCTTTTTCT+TGG - chr4_3:23803115-23803134 None:intergenic 35.0%
! AGAAAAAGAAGCTGCTTTAC+AGG + chr4_3:23803115-23803134 Msa0635330:CDS 35.0%
! CTTTTACTCAGAAATGGGTA+TGG - chr4_3:23803148-23803167 None:intergenic 35.0%
CATACCCATTTCTGAGTAAA+AGG + chr4_3:23803146-23803165 Msa0635330:exon 35.0%
! GAAAGCCTTTTACTCAGAAA+TGG - chr4_3:23803154-23803173 None:intergenic 35.0%
TTATTGTGAAGGTTATTGGG+TGG + chr4_3:23803223-23803242 Msa0635330:three_prime_UTR 35.0%
TATTGTGAAGGTTATTGGGT+GGG + chr4_3:23803224-23803243 Msa0635330:three_prime_UTR 35.0%
!! TTTTGTTTCAAGTATGGGGT+TGG + chr4_3:23803299-23803318 Msa0635330:three_prime_UTR 35.0%
! TTTGTTTCAAGTATGGGGTT+GGG + chr4_3:23803300-23803319 Msa0635330:three_prime_UTR 35.0%
! GTTTGGAGTTGGAGACAATT+GGG - chr4_3:23799667-23799686 None:intergenic 40.0%
! ACTTCTTCAGCAGGTTTTTG+GGG - chr4_3:23799817-23799836 None:intergenic 40.0%
! CACTTCTTCAGCAGGTTTTT+GGG - chr4_3:23799818-23799837 None:intergenic 40.0%
!! AACAGTTTCAGAGCTTGTTG+TGG - chr4_3:23799842-23799861 None:intergenic 40.0%
GGCTGATGTGGAAAAAGAAA+AGG + chr4_3:23799996-23800015 Msa0635330:CDS 40.0%
ACTTTCTTCTCAGCAGCTTT+AGG - chr4_3:23800366-23800385 None:intergenic 40.0%
TAAAGCTGCTGAGAAGAAAG+TGG + chr4_3:23800365-23800384 Msa0635330:CDS 40.0%
TGTTGTAGAACCTGAAAAGG+AGG + chr4_3:23800395-23800414 Msa0635330:CDS 40.0%
! ACTTTCTTCTCCTCCTTTTC+AGG - chr4_3:23800408-23800427 None:intergenic 40.0%
TGAAAAGGAGGAGAAGAAAG+TGG + chr4_3:23800407-23800426 Msa0635330:CDS 40.0%
ACCTGAAAAGGAGAAGAAAG+TGG + chr4_3:23800446-23800465 Msa0635330:CDS 40.0%
! TCCACTTTCTTCTCCTTTTC+AGG - chr4_3:23800450-23800469 None:intergenic 40.0%
TGAAAAGGAGAAGAAAGTGG+AGG + chr4_3:23800449-23800468 Msa0635330:CDS 40.0%
CCAGAGGAAGTTGAAATATG+GGG + chr4_3:23800633-23800652 Msa0635330:CDS 40.0%
TTCCCTTACTAGCTGATGAA+AGG + chr4_3:23800658-23800677 Msa0635330:CDS 40.0%
CTCCTTTCATCAGCTAGTAA+GGG - chr4_3:23800663-23800682 None:intergenic 40.0%
ACTCCTTTCATCAGCTAGTA+AGG - chr4_3:23800664-23800683 None:intergenic 40.0%
TTCTCAAATTCCTGAGAGCA+AGG + chr4_3:23800694-23800713 Msa0635330:CDS 40.0%
TCTCAAATTCCTGAGAGCAA+GGG + chr4_3:23800695-23800714 Msa0635330:CDS 40.0%
!!! AGCAAGGGATTTTAAGGTGA+AGG + chr4_3:23800710-23800729 Msa0635330:CDS 40.0%
!!! AAGGGATTTTAAGGTGAAGG+AGG + chr4_3:23800713-23800732 Msa0635330:CDS 40.0%
!! ACTGATGGTACTGACAAAGA+AGG + chr4_3:23801410-23801429 Msa0635330:CDS 40.0%
ACAAGAGTAGAGATACCAGA+TGG - chr4_3:23801581-23801600 None:intergenic 40.0%
AATTCTCCTGGACTTCTTGT+TGG + chr4_3:23801620-23801639 Msa0635330:CDS 40.0%
TTCTTACCAACAAGAAGTCC+AGG - chr4_3:23801629-23801648 None:intergenic 40.0%
TGATCATCCTAGAAAAGGCA+AGG - chr4_3:23801863-23801882 None:intergenic 40.0%
AGGACTGATCATCCTAGAAA+AGG - chr4_3:23801868-23801887 None:intergenic 40.0%
TTAGTCCTTTGTGTCAGGAA+AGG - chr4_3:23801888-23801907 None:intergenic 40.0%
GAAAAGGGTTTCAGCAGATT+TGG - chr4_3:23801937-23801956 None:intergenic 40.0%
GTTTGTGGCAACCTTCTTAT+GGG - chr4_3:23802022-23802041 None:intergenic 40.0%
TGTTTGTGGCAACCTTCTTA+TGG - chr4_3:23802023-23802042 None:intergenic 40.0%
CTCAGTCCTCCATATTTAAC+CGG - chr4_3:23802557-23802576 None:intergenic 40.0%
TGATAGTAACCTCAGTAGCA+GGG - chr4_3:23802613-23802632 None:intergenic 40.0%
! TTGATAGTAACCTCAGTAGC+AGG - chr4_3:23802614-23802633 None:intergenic 40.0%
! CCACAATATTGCGGATTTTG+AGG - chr4_3:23802818-23802837 None:intergenic 40.0%
CCTCAAAATCCGCAATATTG+TGG + chr4_3:23802815-23802834 Msa0635330:intron 40.0%
!! GAATGTGCAGAAAAGCACTT+TGG + chr4_3:23802900-23802919 Msa0635330:intron 40.0%
!! TGCAGAAAAGCACTTTGGTT+TGG + chr4_3:23802905-23802924 Msa0635330:intron 40.0%
!! GCAGAAAAGCACTTTGGTTT+GGG + chr4_3:23802906-23802925 Msa0635330:intron 40.0%
CTGTGATAATCCAGAAGAAC+AGG + chr4_3:23802998-23803017 Msa0635330:CDS 40.0%
! CAGCAATTTTCCTGTTCTTC+TGG - chr4_3:23803011-23803030 None:intergenic 40.0%
ATGGTGAGTATAACCTTTCC+AGG - chr4_3:23803078-23803097 None:intergenic 40.0%
TGAATGAAACCTTTGCTCGA+TGG + chr4_3:23803401-23803420 Msa0635330:three_prime_UTR 40.0%
GTTGGAGACAATTGGGCTTT+GGG - chr4_3:23799660-23799679 None:intergenic 45.0%
AGTTGGAGACAATTGGGCTT+TGG - chr4_3:23799661-23799680 None:intergenic 45.0%
! GGTTTGGAGTTGGAGACAAT+TGG - chr4_3:23799668-23799687 None:intergenic 45.0%
! CCACTTCTTCAGCAGGTTTT+TGG - chr4_3:23799819-23799838 None:intergenic 45.0%
CCAAAAACCTGCTGAAGAAG+TGG + chr4_3:23799816-23799835 Msa0635330:CDS 45.0%
GAGAAAGAACAACAGGCTGA+TGG + chr4_3:23799865-23799884 Msa0635330:CDS 45.0%
AACAGCTTCCTTATCAGTGG+TGG - chr4_3:23799932-23799951 None:intergenic 45.0%
AGCAACAGCTTCCTTATCAG+TGG - chr4_3:23799935-23799954 None:intergenic 45.0%
! AGGTTCAGCTACTTTGACTG+GGG - chr4_3:23800196-23800215 None:intergenic 45.0%
! CAGGTTCAGCTACTTTGACT+GGG - chr4_3:23800197-23800216 None:intergenic 45.0%
! TCAGGTTCAGCTACTTTGAC+TGG - chr4_3:23800198-23800217 None:intergenic 45.0%
AGTCAAAGTAGCTGAACCTG+AGG + chr4_3:23800197-23800216 Msa0635330:CDS 45.0%
! TCTTCTTTTGCAGCTACCTC+AGG - chr4_3:23800216-23800235 None:intergenic 45.0%
AGAAAAAGGTTCTACCTCCG+AGG + chr4_3:23800338-23800357 Msa0635330:CDS 45.0%
AAAGGAGGAGAAGAAAGTGG+AGG + chr4_3:23800410-23800429 Msa0635330:CDS 45.0%
GTATCTGTTCCAGTTACGGA+AGG + chr4_3:23800558-23800577 Msa0635330:CDS 45.0%
AGTAACCTCCACTTCAGCAA+CGG - chr4_3:23800604-23800623 None:intergenic 45.0%
TCAACTTCCTCTGGTACAGT+AGG - chr4_3:23800627-23800646 None:intergenic 45.0%
CCCCATATTTCAACTTCCTC+TGG - chr4_3:23800636-23800655 None:intergenic 45.0%
CCTTAAAATCCCTTGCTCTC+AGG - chr4_3:23800707-23800726 None:intergenic 45.0%
! CCTGAGAGCAAGGGATTTTA+AGG + chr4_3:23800704-23800723 Msa0635330:CDS 45.0%
! ACAAACCGTGATTTGGCGAA+AGG + chr4_3:23800752-23800771 Msa0635330:CDS 45.0%
GCGCTTCTTCAAGAAGATCT+TGG + chr4_3:23801362-23801381 Msa0635330:CDS 45.0%
AGAGAACCAAGTTTGTCCGT+TGG + chr4_3:23801510-23801529 Msa0635330:CDS 45.0%
AATCCACCAACGGACAAACT+TGG - chr4_3:23801519-23801538 None:intergenic 45.0%
CCAAAGACTGAATCCACCAA+CGG - chr4_3:23801529-23801548 None:intergenic 45.0%
AAACTCGACTTTGCTCCATC+TGG + chr4_3:23801563-23801582 Msa0635330:CDS 45.0%
TCCTGAATTCGTAGCCAAAC+AGG + chr4_3:23801700-23801719 Msa0635330:CDS 45.0%
ACCTGTTTGGCTACGAATTC+AGG - chr4_3:23801704-23801723 None:intergenic 45.0%
TCAGTCCTTTCCTGACACAA+AGG + chr4_3:23801880-23801899 Msa0635330:CDS 45.0%
TGCTCTTAGTCCTTTGTGTC+AGG - chr4_3:23801893-23801912 None:intergenic 45.0%
AAGGGTTTCAGCAGATTTGG+AGG - chr4_3:23801934-23801953 None:intergenic 45.0%
CTCCGCAATATCAAGGATTG+CGG - chr4_3:23802233-23802252 None:intergenic 45.0%
CATGACTCTCCGCAATATCA+AGG - chr4_3:23802240-23802259 None:intergenic 45.0%
CTTGATATTGCGGAGAGTCA+TGG + chr4_3:23802238-23802257 Msa0635330:intron 45.0%
TATTTAACCGGCACTTGCTC+AGG - chr4_3:23802545-23802564 None:intergenic 45.0%
!! GAGCAAGTGCCGGTTAAATA+TGG + chr4_3:23802545-23802564 Msa0635330:CDS 45.0%
!! CAAGTGCCGGTTAAATATGG+AGG + chr4_3:23802548-23802567 Msa0635330:CDS 45.0%
TGTTGAGTTCCCAGTTTCTG+AGG + chr4_3:23802652-23802671 Msa0635330:CDS 45.0%
TGTTTCGCACCTCAGAAACT+GGG - chr4_3:23802664-23802683 None:intergenic 45.0%
TTGTTTCGCACCTCAGAAAC+TGG - chr4_3:23802665-23802684 None:intergenic 45.0%
TAACTGCGGCCACAATATTG+CGG - chr4_3:23802827-23802846 None:intergenic 45.0%
CAATATTGTGGCCGCAGTTA+CGG + chr4_3:23802827-23802846 Msa0635330:intron 45.0%
GGTTTGGGAAGTAAGAGTTG+TGG + chr4_3:23802921-23802940 Msa0635330:CDS 45.0%
GGGAAGTAAGAGTTGTGGAT+TGG + chr4_3:23802926-23802945 Msa0635330:CDS 45.0%
!! GTGGATTGGAATGTGAGCTA+TGG + chr4_3:23802940-23802959 Msa0635330:CDS 45.0%
! TTTGTGCCTAGTGCTGAAGA+TGG + chr4_3:23802970-23802989 Msa0635330:CDS 45.0%
GTGTATCCATCTTCAGCACT+AGG - chr4_3:23802979-23802998 None:intergenic 45.0%
CTCAGAAATGGGTATGGTCT+TGG - chr4_3:23803142-23803161 None:intergenic 45.0%
TTGTGTTCTCCATCGAGCAA+AGG - chr4_3:23803413-23803432 None:intergenic 45.0%
TGCTCGATGGAGAACACAAT+TGG + chr4_3:23803414-23803433 Msa0635330:three_prime_UTR 45.0%
GCTCGATGGAGAACACAATT+GGG + chr4_3:23803415-23803434 Msa0635330:three_prime_UTR 45.0%
CTCGATGGAGAACACAATTG+GGG + chr4_3:23803416-23803435 Msa0635330:three_prime_UTR 45.0%
! GAGTGAGATGGGTTTGGAGT+TGG - chr4_3:23799678-23799697 None:intergenic 50.0%
! GAGAGAGAGTGAGATGGGTT+TGG - chr4_3:23799684-23799703 None:intergenic 50.0%
TTGGGGTTCAGCAGCCATTA+GGG - chr4_3:23799800-23799819 None:intergenic 50.0%
! TTTGGGGTTCAGCAGCCATT+AGG - chr4_3:23799801-23799820 None:intergenic 50.0%
TTCCTTATCAGTGGTGGCAG+CGG - chr4_3:23799926-23799945 None:intergenic 50.0%
TGCTGATCCTGTTGCTGATG+AGG + chr4_3:23799951-23799970 Msa0635330:CDS 50.0%
TGATCCTGTTGCTGATGAGG+CGG + chr4_3:23799954-23799973 Msa0635330:CDS 50.0%
!! CTCAGCAGCTTTAGGTTCCT+CGG - chr4_3:23800358-23800377 None:intergenic 50.0%
AGCTGCTGAGAAGAAAGTGG+AGG + chr4_3:23800368-23800387 Msa0635330:CDS 50.0%
!! GCTGCAAGTACCGAAGAAGA+CGG + chr4_3:23800501-23800520 Msa0635330:CDS 50.0%
! GGTTTTTGCGCCGTCTTCTT+CGG - chr4_3:23800514-23800533 None:intergenic 50.0%
GGTTGTTCACCTTCCGTAAC+TGG - chr4_3:23800570-23800589 None:intergenic 50.0%
GGAAGGTGAACAACCTGTTG+CGG + chr4_3:23800575-23800594 Msa0635330:CDS 50.0%
GTAACCTCCACTTCAGCAAC+GGG - chr4_3:23800603-23800622 None:intergenic 50.0%
GGTTACTCCTACTGTACCAG+AGG + chr4_3:23800617-23800636 Msa0635330:CDS 50.0%
GAACCAAGTTTGTCCGTTGG+TGG + chr4_3:23801513-23801532 Msa0635330:CDS 50.0%
!! CCGTTGGTGGATTCAGTCTT+TGG + chr4_3:23801526-23801545 Msa0635330:CDS 50.0%
! GAAAAGGCAAGGTACCACCA+AGG - chr4_3:23801852-23801871 None:intergenic 50.0%
! GGTGGTACCTTGCCTTTTCT+AGG + chr4_3:23801853-23801872 Msa0635330:CDS 50.0%
CGCCGCAATCCTTGATATTG+CGG + chr4_3:23802228-23802247 Msa0635330:intron 50.0%
CGGAGAGTCATGGTCAAATG+CGG + chr4_3:23802248-23802267 Msa0635330:intron 50.0%
TATAGCTCCTGAGCAAGTGC+CGG + chr4_3:23802535-23802554 Msa0635330:CDS 50.0%
ATATGGAGGACTGAGCAGAG+AGG + chr4_3:23802562-23802581 Msa0635330:CDS 50.0%
TATGGAGGACTGAGCAGAGA+GGG + chr4_3:23802563-23802582 Msa0635330:CDS 50.0%
ATGTGGTTGCAATGCCGTTG+CGG + chr4_3:23802789-23802808 Msa0635330:intron 50.0%
!!! GGATTTTGAGGTCTCCGCAA+CGG - chr4_3:23802806-23802825 None:intergenic 50.0%
GTGGTCAACAACCGTAACTG+CGG - chr4_3:23802841-23802860 None:intergenic 50.0%
GTTGTGGCCACTTCTTCAGC+AGG - chr4_3:23799826-23799845 None:intergenic 55.0%
ATCAGTGGTGGCAGCGGTAA+CGG - chr4_3:23799920-23799939 None:intergenic 55.0%
TACCGCTGCCACCACTGATA+AGG + chr4_3:23799921-23799940 Msa0635330:CDS 55.0%
TTCTCCGCCTCATCAGCAAC+AGG - chr4_3:23799961-23799980 None:intergenic 55.0%
ACATCAGCCACCACTTCTGC+CGG - chr4_3:23799985-23800004 None:intergenic 55.0%
! TCAGCTACTTTGACTGGGGC+AGG - chr4_3:23800192-23800211 None:intergenic 55.0%
!! AGCAGCTTTAGGTTCCTCGG+AGG - chr4_3:23800355-23800374 None:intergenic 55.0%
TGCGGCGCGACTTAAAGCTT+TGG - chr4_3:23802215-23802234 None:intergenic 55.0%
ACCTTCAAAGTCGGCGAACC+TGG + chr4_3:23803057-23803076 Msa0635330:CDS 55.0%
!! TCCAGGTTCGCCGACTTTGA+AGG - chr4_3:23803061-23803080 None:intergenic 55.0%
CAAAGTCGGCGAACCTGGAA+AGG + chr4_3:23803062-23803081 Msa0635330:CDS 55.0%
AACGGCAGCAGCGGTAACAG+CGG - chr4_3:23799902-23799921 None:intergenic 60.0%
TGCTGATGAGGCGGAGAAGC+CGG + chr4_3:23799963-23799982 Msa0635330:CDS 60.0%
GGCAGAAGTGGTGGCTGATG+TGG + chr4_3:23799984-23800003 Msa0635330:CDS 60.0%
ACTTTGACTGGGGCAGGTGG+AGG - chr4_3:23800186-23800205 None:intergenic 60.0%
! GCTACTTTGACTGGGGCAGG+TGG - chr4_3:23800189-23800208 None:intergenic 60.0%
! TCAGCAACGGGTTCCGCAAC+AGG - chr4_3:23800591-23800610 None:intergenic 60.0%
TGCGGAACCCGTTGCTGAAG+TGG + chr4_3:23800593-23800612 Msa0635330:CDS 60.0%
GGAACCCGTTGCTGAAGTGG+AGG + chr4_3:23800596-23800615 Msa0635330:CDS 60.0%
CTCAGTAGCAGGGTCAGCAG+TGG - chr4_3:23802603-23802622 None:intergenic 60.0%
CACTGCTGACCCTGCTACTG+AGG + chr4_3:23802601-23802620 Msa0635330:CDS 60.0%
GGAGAAGCCGGCAGAAGTGG+TGG + chr4_3:23799975-23799994 Msa0635330:CDS 65.0%
! GGCAGCGGTAACGGCAGCAG+CGG - chr4_3:23799911-23799930 None:intergenic 70.0%
GGCGGAGAAGCCGGCAGAAG+TGG + chr4_3:23799972-23799991 Msa0635330:CDS 70.0%
GACTGGGGCAGGTGGAGGAG+CGG - chr4_3:23800181-23800200 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 23799635 23803488 23799635 ID=Msa0635330;Name=Msa0635330
chr4_3 mRNA 23799635 23803488 23799635 ID=Msa0635330-mRNA-1;Parent=Msa0635330;Name=Msa0635330-mRNA-1;_AED=0.02;_eAED=0.02;_QI=167|1|1|1|1|1|5|324|622
chr4_3 exon 23799635 23800773 23799635 ID=Msa0635330-mRNA-1:exon:6119;Parent=Msa0635330-mRNA-1
chr4_3 exon 23801347 23801721 23801347 ID=Msa0635330-mRNA-1:exon:6120;Parent=Msa0635330-mRNA-1
chr4_3 exon 23801834 23801958 23801834 ID=Msa0635330-mRNA-1:exon:6121;Parent=Msa0635330-mRNA-1
chr4_3 exon 23802532 23802673 23802532 ID=Msa0635330-mRNA-1:exon:6122;Parent=Msa0635330-mRNA-1
chr4_3 exon 23802910 23803488 23802910 ID=Msa0635330-mRNA-1:exon:6123;Parent=Msa0635330-mRNA-1
chr4_3 five_prime_UTR 23799635 23799801 23799635 ID=Msa0635330-mRNA-1:five_prime_utr;Parent=Msa0635330-mRNA-1
chr4_3 CDS 23799802 23800773 23799802 ID=Msa0635330-mRNA-1:cds;Parent=Msa0635330-mRNA-1
chr4_3 CDS 23801347 23801721 23801347 ID=Msa0635330-mRNA-1:cds;Parent=Msa0635330-mRNA-1
chr4_3 CDS 23801834 23801958 23801834 ID=Msa0635330-mRNA-1:cds;Parent=Msa0635330-mRNA-1
chr4_3 CDS 23802532 23802673 23802532 ID=Msa0635330-mRNA-1:cds;Parent=Msa0635330-mRNA-1
chr4_3 CDS 23802910 23803164 23802910 ID=Msa0635330-mRNA-1:cds;Parent=Msa0635330-mRNA-1
chr4_3 three_prime_UTR 23803165 23803488 23803165 ID=Msa0635330-mRNA-1:three_prime_utr;Parent=Msa0635330-mRNA-1
Gene Sequence

>Msa0635330

ATGGCTGCTGAACCCCAAAAACCTGCTGAAGAAGTGGCCACAACAAGCTCTGAAACTGTTGTTGAGAAAGAACAACAGGCTGATGGAGTTGTAGCTGCCGCTGTTACCGCTGCTGCCGTTACCGCTGCCACCACTGATAAGGAAGCTGTTGCTGATCCTGTTGCTGATGAGGCGGAGAAGCCGGCAGAAGTGGTGGCTGATGTGGAAAAAGAAAAGGTGGCAGACGAAACTGTTGTTGTTGATGAAAGCAAGGTTTCTCAATCAGTTTCTTTTAAAGAAGAAACTAACGTGGTTTCTGAACTTCCAGAAGTTCAGAAAAAAGCACTTGATGATTTTAAACAGCTTATTCAAGAAGCGCTTAACAAACATGAATTCACCGCTCCTCCACCTGCCCCAGTCAAAGTAGCTGAACCTGAGGTAGCTGCAAAAGAAGAGAAAAAAGCTGAAGAAGATGACAAGAAAACCGAAGAAAAGAAAGAAGAAGTGGCAGAAGAGAAGAAAGATGAAGCAGTAGTTGAAGAGAAAAAGGTTGAAGAAGAAAAAGGTTCTACCTCCGAGGAACCTAAAGCTGCTGAGAAGAAAGTGGAGGAAACTGTTGTAGAACCTGAAAAGGAGGAGAAGAAAGTGGAGGAAACTGTTGTAGAACCTGAAAAGGAGAAGAAAGTGGAGGAAACTGTTGTAGAAGTTGTTGAGAAAATAGCTGCAAGTACCGAAGAAGACGGCGCAAAAACCGTTGAAGCTATTCAAGAAAGCATAGTATCTGTTCCAGTTACGGAAGGTGAACAACCTGTTGCGGAACCCGTTGCTGAAGTGGAGGTTACTCCTACTGTACCAGAGGAAGTTGAAATATGGGGAATTCCCTTACTAGCTGATGAAAGGAGTGATGTGATTCTTCTCAAATTCCTGAGAGCAAGGGATTTTAAGGTGAAGGAGGCTTTCACTATGATCAAACAAACCGTGATTTGGCGAAAGGAATTCGGAGTCGAAGCGCTTCTTCAAGAAGATCTTGGAACTGATTGGGACAAAGTTGTTTTCACTGATGGTACTGACAAAGAAGGTCACCCTGTTTATTACAATGTTTTTGGTGAGTTTGAGGATAAGGATTTGTATCAAAAAACTTTCTCTGATGAAGAGAAGAGAACCAAGTTTGTCCGTTGGTGGATTCAGTCTTTGGAGAAAAGTGTTAGGAAACTCGACTTTGCTCCATCTGGTATCTCTACTCTTGTTCAAATTAATGATCTTAAAAATTCTCCTGGACTTCTTGTTGGTAAGAAAGAGCTTAGACAATTGACTAAGCAGACTCTTCAGTTGCTTCAAGATAACTATCCTGAATTCGTAGCCAAACAGATTTTCATCAATGTTCCTTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCTTTCCTGACACAAAGGACTAAGAGCAAATTTGTATTTGCTGGTTCCTCCAAATCTGCTGAAACCCTTTTCAAATATATAGCTCCTGAGCAAGTGCCGGTTAAATATGGAGGACTGAGCAGAGAGGGTGAACAGCAATTCACCACTGCTGACCCTGCTACTGAGGTTACTATCAAACCAACAACAAAACATGCTGTTGAGTTCCCAGTTTCTGAGAAAAGCACTTTGGTTTGGGAAGTAAGAGTTGTGGATTGGAATGTGAGCTATGGAGCAGAATTTGTGCCTAGTGCTGAAGATGGATACACTGTGATAATCCAGAAGAACAGGAAAATTGCTGCAGCTGATGAAACAGTAATTAGCAACACCTTCAAAGTCGGCGAACCTGGAAAGGTTATACTCACCATTGATAACCAAACATCCAAGAAAAAGAAGCTGCTTTACAGGTCCAAGACCATACCCATTTCTGAGTAA
Protein sequence

>Msa0635330

MAAEPQKPAEEVATTSSETVVEKEQQADGVVAAAVTAAAVTAATTDKEAVADPVADEAEKPAEVVADVEKEKVADETVVVDESKVSQSVSFKEETNVVSELPEVQKKALDDFKQLIQEALNKHEFTAPPPAPVKVAEPEVAAKEEKKAEEDDKKTEEKKEEVAEEKKDEAVVEEKKVEEEKGSTSEEPKAAEKKVEETVVEPEKEEKKVEETVVEPEKEKKVEETVVEVVEKIAASTEEDGAKTVEAIQESIVSVPVTEGEQPVAEPVAEVEVTPTVPEEVEIWGIPLLADERSDVILLKFLRARDFKVKEAFTMIKQTVIWRKEFGVEALLQEDLGTDWDKVVFTDGTDKEGHPVYYNVFGEFEDKDLYQKTFSDEEKRTKFVRWWIQSLEKSVRKLDFAPSGISTLVQINDLKNSPGLLVGKKELRQLTKQTLQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFLTQRTKSKFVFAGSSKSAETLFKYIAPEQVPVKYGGLSREGEQQFTTADPATEVTIKPTTKHAVEFPVSEKSTLVWEVRVVDWNVSYGAEFVPSAEDGYTVIIQKNRKIAAADETVISNTFKVGEPGKVILTIDNQTSKKKKLLYRSKTIPISE*