AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0539880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539880 MtrunA17_Chr4g0014901 88.640 625 35 7 1 619 1 595 0.0 943
Msa0539880 MtrunA17_Chr3g0131071 57.627 531 181 10 79 603 64 556 0.0 564
Msa0539880 MtrunA17_Chr8g0385291 65.072 418 134 7 201 614 88 497 0.0 549
Msa0539880 MtrunA17_Chr4g0014911 63.689 347 121 2 276 619 121 465 6.04e-152 446
Msa0539880 MtrunA17_Chr2g0293201 52.770 343 154 5 277 614 124 463 6.21e-124 374
Msa0539880 MtrunA17_Chr4g0004981 49.258 337 160 6 277 608 107 437 3.81e-113 346
Msa0539880 MtrunA17_Chr1g0183881 39.578 379 204 9 245 614 101 463 2.28e-93 295
Msa0539880 MtrunA17_Chr7g0243541 41.141 333 143 6 280 608 101 384 9.56e-81 260
Msa0539880 MtrunA17_Chr3g0131581 28.899 218 131 6 289 501 64 262 8.58e-19 87.0
Msa0539880 MtrunA17_Chr8g0385681 32.407 216 126 7 289 501 47 245 1.52e-18 85.9
Msa0539880 MtrunA17_Chr8g0385691 31.019 216 129 7 289 501 44 242 7.02e-18 84.0
Msa0539880 MtrunA17_Chr3g0144911 30.180 222 130 9 294 501 110 320 1.69e-15 79.3
Msa0539880 MtrunA17_Chr1g0155521 27.706 231 143 8 285 501 102 322 5.69e-15 78.2
Msa0539880 MtrunA17_Chr5g0404711 25.877 228 151 6 285 501 66 286 1.05e-14 77.0
Msa0539880 MtrunA17_Chr4g0035391 27.602 221 137 7 294 501 107 317 1.70e-14 76.6
Msa0539880 MtrunA17_Chr4g0035381 25.984 254 163 8 265 501 49 294 3.67e-14 74.7
Msa0539880 MtrunA17_Chr8g0372651 26.695 236 153 7 285 508 69 296 6.73e-13 71.6
Msa0539880 MtrunA17_Chr5g0425421 27.805 205 121 8 291 487 45 230 1.41e-11 66.2
Msa0539880 MtrunA17_Chr3g0144891 25.339 221 142 7 294 501 97 307 3.94e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0539880 AT4G09160.2 66.082 342 111 2 280 618 302 641 1.37e-168 495
Msa0539880 AT4G09160.3 66.082 342 111 2 280 618 302 641 1.63e-168 495
Msa0539880 AT4G09160.1 66.082 342 111 2 280 618 327 666 1.84e-168 496
Msa0539880 AT1G72160.1 52.429 494 216 7 128 617 12 490 4.49e-163 476
Msa0539880 AT1G22530.2 54.962 393 155 7 224 614 275 647 5.62e-143 430
Msa0539880 AT1G22530.1 54.962 393 155 7 224 614 309 681 6.80e-143 431
Msa0539880 AT1G72150.1 54.067 418 177 8 202 614 165 572 3.31e-134 405
Msa0539880 AT3G51670.1 48.348 333 162 6 280 608 69 395 1.57e-108 333
Msa0539880 AT1G01630.1 28.372 215 136 7 289 501 47 245 4.37e-16 79.0
Msa0539880 AT4G08690.2 27.863 262 158 10 253 506 5 243 2.70e-15 77.4
Msa0539880 AT4G08690.1 27.863 262 158 10 253 506 5 243 2.70e-15 77.4
Msa0539880 AT4G08690.3 27.863 262 158 10 253 506 5 243 2.70e-15 77.4
Msa0539880 AT4G34580.2 26.484 219 142 6 294 501 88 298 3.67e-15 79.3
Msa0539880 AT4G34580.1 26.484 219 142 6 294 501 88 298 3.67e-15 79.3
Msa0539880 AT2G21520.1 28.151 238 147 8 285 508 100 327 4.82e-15 79.0
Msa0539880 AT2G21520.2 28.151 238 147 8 285 508 104 331 5.34e-15 79.0
Msa0539880 AT2G21520.3 28.151 238 147 8 285 508 104 331 5.34e-15 79.0
Msa0539880 AT2G16380.2 29.741 232 141 9 285 503 78 300 6.21e-15 78.6
Msa0539880 AT2G16380.1 29.741 232 141 9 285 503 78 300 6.21e-15 78.6
Msa0539880 AT4G39170.2 29.536 237 145 10 285 508 98 325 7.40e-15 78.6
Msa0539880 AT4G39170.1 29.536 237 145 10 285 508 98 325 7.62e-15 78.2
Msa0539880 AT2G21540.3 27.602 221 137 7 294 501 95 305 7.25e-14 75.1
Msa0539880 AT2G21540.5 27.602 221 137 7 294 501 95 305 7.25e-14 75.1
Msa0539880 AT2G21540.6 27.602 221 137 7 294 501 95 305 7.61e-14 75.1
Msa0539880 AT2G21540.2 27.602 221 137 7 294 501 95 305 7.61e-14 75.1
Msa0539880 AT2G21540.1 27.602 221 137 7 294 501 95 305 7.61e-14 75.1
Msa0539880 AT2G21540.4 27.602 221 137 7 294 501 95 305 7.61e-14 75.1
Msa0539880 AT1G19650.1 27.074 229 142 6 294 508 104 321 1.37e-13 74.3
Msa0539880 AT3G24840.1 26.941 219 139 7 295 501 104 313 6.66e-13 72.0
Msa0539880 AT3G24840.6 26.941 219 139 7 295 501 104 313 6.66e-13 72.0
Msa0539880 AT3G24840.4 26.941 219 139 7 295 501 104 313 6.66e-13 72.0
Msa0539880 AT3G24840.2 26.941 219 139 7 295 501 104 313 6.66e-13 72.0
Msa0539880 AT3G24840.7 26.941 219 139 7 295 501 104 313 7.09e-13 72.0
Msa0539880 AT3G24840.3 26.941 219 139 7 295 501 104 313 7.09e-13 72.0
Msa0539880 AT3G24840.5 26.941 219 139 7 295 501 104 313 7.09e-13 72.0
Msa0539880 AT1G19650.3 27.074 229 142 6 294 508 104 321 2.92e-12 69.7
Msa0539880 AT1G22180.2 26.222 225 142 7 291 510 45 250 8.41e-12 67.0
Msa0539880 AT1G22180.4 26.222 225 142 7 291 510 45 250 8.41e-12 67.0
Msa0539880 AT1G75370.1 27.523 218 141 5 294 501 113 323 7.46e-11 65.5

Find 155 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATTATTGTGAAGGTTAT+TGG 0.172143 4_1:+21225364 Msa0539880:three_prime_UTR
CCGTTGGTGGATTCAGTCTT+TGG 0.211381 4_1:+21223671 Msa0539880:CDS
CATACCCATTTCTGAGTAAA+AGG 0.214711 4_1:+21225291 Msa0539880:exon
ACCTGTTTGGCTACGAATTC+AGG 0.215816 4_1:-21223846 None:intergenic
ACTTTCTTCTCAGCAGCTTT+AGG 0.232800 4_1:-21222508 None:intergenic
CTTTCACATTGACAAGAAAA+AGG 0.255187 4_1:+21225314 Msa0539880:three_prime_UTR
GGTTGTTCACCTTCCGTAAC+TGG 0.274628 4_1:-21222712 None:intergenic
AGCAGTAGTTGAAGAGAAAA+AGG 0.282779 4_1:+21222453 Msa0539880:CDS
TTGTTTCGCACCTCAGAAAC+TGG 0.292375 4_1:-21224807 None:intergenic
GAAAAGGGTTTCAGCAGATT+TGG 0.294256 4_1:-21224079 None:intergenic
TACCAGAGGAAGTTGAAATA+TGG 0.296782 4_1:+21222776 Msa0539880:CDS
AAGAGCAAATTTGTATTTGC+TGG 0.298998 4_1:+21224051 Msa0539880:CDS
TCAGGTTCAGGTGCTTTGAC+TGG 0.302986 4_1:-21222340 None:intergenic
ACATTATTGTGAAGGTTATT+GGG 0.322782 4_1:+21225365 Msa0539880:three_prime_UTR
TATCTGTAATTTAAGGAATT+CGG 0.328551 4_1:+21223477 Msa0539880:intron
TGCAGAAAAGCACTTTGGTT+TGG 0.329632 4_1:+21225050 Msa0539880:intron
GAGCAAGTGCCGGTTAAATA+TGG 0.332028 4_1:+21224690 Msa0539880:CDS
TTTGCAGCTACTTCAGGTTC+AGG 0.340124 4_1:-21222352 None:intergenic
CAGGTTCAGGTGCTTTGACT+GGG 0.342256 4_1:-21222339 None:intergenic
CTCAGAAATGGGTATGGTCT+TGG 0.350428 4_1:-21225284 None:intergenic
TGCTCGATGGAGAACACAAT+TGG 0.352362 4_1:+21225559 Msa0539880:three_prime_UTR
TGATATTAGGGTTAAGGTTA+AGG 0.356176 4_1:-21221906 None:intergenic
AAGAAGATCTTGGAACTGAT+TGG 0.360586 4_1:+21223517 Msa0539880:CDS
AAAAGAGTGATATGATATTA+GGG 0.361161 4_1:-21221918 None:intergenic
GCTTTGACTGGGGCGGGTGG+AGG 0.361603 4_1:-21222328 None:intergenic
AAGAAAGGACTTACTTGAAA+AGG 0.368124 4_1:-21224095 None:intergenic
GTGATATGATATTAGGGTTA+AGG 0.369926 4_1:-21221912 None:intergenic
TGATCAAACAAACCGTGATT+TGG 0.374965 4_1:+21222890 Msa0539880:CDS
AGTTGGAGACAATTGGGCTT+TGG 0.375273 4_1:-21221808 None:intergenic
CCCCATATTTCAACTTCCTC+TGG 0.377231 4_1:-21222778 None:intergenic
GCAGAAAAGCACTTTGGTTT+GGG 0.378301 4_1:+21225051 Msa0539880:intron
ACTCCTTTCATCAGCTAGTA+AGG 0.378846 4_1:-21222806 None:intergenic
GTTGGAGACAATTGGGCTTT+GGG 0.379074 4_1:-21221807 None:intergenic
TGCTCTTAGTCCTTTGTGTC+AGG 0.380418 4_1:-21224035 None:intergenic
GCGCTTCTTCAAGAAGATCT+TGG 0.381509 4_1:+21223507 Msa0539880:CDS
ATGGTGAGTATAACCTTTCC+AGG 0.382838 4_1:-21225220 None:intergenic
ACCTTCAAAGTCGGCGAACC+TGG 0.382877 4_1:+21225202 Msa0539880:CDS
AATTCTCCTGGACTTCTTGT+TGG 0.387753 4_1:+21223765 Msa0539880:CDS
AGTCTTTGGAGAAAAGTGTT+AGG 0.391795 4_1:+21223685 Msa0539880:CDS
TCAGCAACGGGTTCCGCAAC+AGG 0.400035 4_1:-21222733 None:intergenic
GTTGTGGCCACTTCTTCAGC+AGG 0.401875 4_1:-21221977 None:intergenic
GGCAGCGGTAACGGCGGCAG+CGG 0.410369 4_1:-21222053 None:intergenic
CTCAGTCCTCCATATTTAAC+CGG 0.412116 4_1:-21224699 None:intergenic
GTGAGAGATGGGTTTGAAGT+TGG 0.414259 4_1:-21221825 None:intergenic
CTCAGCAGCTTTAGGTTCCT+CGG 0.416167 4_1:-21222500 None:intergenic
GCTCGATGGAGAACACAATT+GGG 0.418706 4_1:+21225560 Msa0539880:three_prime_UTR
AAGGAGAATTCAAACCTGTT+TGG 0.420405 4_1:-21223859 None:intergenic
CCTTAAAATCCCTTGCTCTC+AGG 0.422195 4_1:-21222849 None:intergenic
ACCAGAGGAAGTTGAAATAT+GGG 0.422351 4_1:+21222777 Msa0539880:CDS
GGTTTGAAGTTGGAGACAAT+TGG 0.425826 4_1:-21221815 None:intergenic
CTTGGATGTTTGGTTATCAA+TGG 0.426352 4_1:-21225239 None:intergenic
CTGTGATAATCCAGAAGAAC+AGG 0.427354 4_1:+21225143 Msa0539880:CDS
TCCAGGTTCGCCGACTTTGA+AGG 0.428840 4_1:-21225203 None:intergenic
ATCAGTGGTGGCAGCGGTAA+CGG 0.429611 4_1:-21222062 None:intergenic
ATAGAGAGAGTGTGAGAGAT+GGG 0.432070 4_1:-21221836 None:intergenic
TGCTGATGAGGCGGAGAAGC+CGG 0.438723 4_1:+21222108 Msa0539880:CDS
TTTGTTTCAAGTATGGGGTT+GGG 0.439847 4_1:+21225445 Msa0539880:three_prime_UTR
CATAGTATCTGTTCCAGTTA+CGG 0.441670 4_1:+21222699 Msa0539880:CDS
TCAGGTGCTTTGACTGGGGC+GGG 0.442030 4_1:-21222334 None:intergenic
GGGAAGTAAGAGTTGTGGAT+TGG 0.444817 4_1:+21225071 Msa0539880:CDS
AGAAGATCTTGGAACTGATT+GGG 0.446509 4_1:+21223518 Msa0539880:CDS
TTCTCCGCCTCATCAGCAAC+AGG 0.448387 4_1:-21222103 None:intergenic
TGAAAGCAAGGTTTCTCAAT+CGG 0.448952 4_1:+21222189 Msa0539880:CDS
TATTTAACCGGCACTTGCTC+AGG 0.449531 4_1:-21224687 None:intergenic
AACTGTTGTAGAACCTGAAA+AGG 0.454487 4_1:+21222537 Msa0539880:CDS
AACTGTTGTAGAACCTGAAA+AGG 0.454487 4_1:+21222579 Msa0539880:CDS
TTGATAGTAACCTCAGTAGC+AGG 0.455020 4_1:-21224756 None:intergenic
GTTTGAAGTTGGAGACAATT+GGG 0.455980 4_1:-21221814 None:intergenic
GTAACCTCCACTTCAGCAAC+GGG 0.461927 4_1:-21222745 None:intergenic
TCCTGAATTCGTAGCCAAAC+AGG 0.462520 4_1:+21223845 Msa0539880:CDS
AAACTCGACTTTGCTCCATC+TGG 0.468423 4_1:+21223708 Msa0539880:CDS
GACTGGGGCGGGTGGAGGAG+CGG 0.473624 4_1:-21222323 None:intergenic
GAACCAAGTTTGTCCGTTGG+TGG 0.478851 4_1:+21223658 Msa0539880:CDS
AGAAAGGACTTACTTGAAAA+GGG 0.480833 4_1:-21224094 None:intergenic
TATAGAGAGAGTGTGAGAGA+TGG 0.481174 4_1:-21221837 None:intergenic
TTCTTACCAACAAGAAGTCC+AGG 0.484320 4_1:-21223771 None:intergenic
TACCGCTGCCACCACTGATA+AGG 0.488762 4_1:+21222066 Msa0539880:CDS
CGAAGAAAAGAAAGAAGAAG+TGG 0.488934 4_1:+21222411 Msa0539880:CDS
GGCGGAGAAGCCGGCAGAAG+TGG 0.492001 4_1:+21222117 Msa0539880:CDS
TGTTGTTGAGAAAGAACAAC+AGG 0.496108 4_1:+21222012 Msa0539880:CDS
TTCTCAAATTCCTGAGAGCA+AGG 0.496214 4_1:+21222839 Msa0539880:CDS
AGGACTGATCATCCTAGAAA+AGG 0.500229 4_1:-21224010 None:intergenic
GGTGCTTTGACTGGGGCGGG+TGG 0.500992 4_1:-21222331 None:intergenic
TTCAGGTGCTTTGACTGGGG+CGG 0.502005 4_1:-21222335 None:intergenic
AATCCACCAACGGACAAACT+TGG 0.510917 4_1:-21223661 None:intergenic
CACTGCTGACCCTGCTACTG+AGG 0.513798 4_1:+21224746 Msa0539880:CDS
TATTGTGAAGGTTATTGGGT+GGG 0.521406 4_1:+21225369 Msa0539880:three_prime_UTR
AAGGGTTTCAGCAGATTTGG+AGG 0.522395 4_1:-21224076 None:intergenic
GAATGTGCAGAAAAGCACTT+TGG 0.525162 4_1:+21225045 Msa0539880:intron
CAAAGTCGGCGAACCTGGAA+AGG 0.527982 4_1:+21225207 Msa0539880:CDS
TGCGGAACCCGTTGCTGAAG+TGG 0.531376 4_1:+21222738 Msa0539880:CDS
TGAATGAAACCTTTGCTCGA+TGG 0.532359 4_1:+21225546 Msa0539880:three_prime_UTR
TCAATATTCTTAAATTAATG+TGG 0.536779 4_1:+21225499 Msa0539880:three_prime_UTR
TGCTGATCCTGTTGCTGATG+AGG 0.538781 4_1:+21222096 Msa0539880:CDS
GGCAGAAGTGGTGGCTGATG+TGG 0.542195 4_1:+21222129 Msa0539880:CDS
TTCCTTATCAGTGGTGGCAG+CGG 0.542972 4_1:-21222068 None:intergenic
TCTCAAATTCCTGAGAGCAA+GGG 0.545066 4_1:+21222840 Msa0539880:CDS
ACATCAGCCACCACTTCTGC+CGG 0.546778 4_1:-21222127 None:intergenic
GCTTTCTTGAATAGCTTCAA+CGG 0.554411 4_1:-21222677 None:intergenic
TAAAGCTGCTGAGAAGAAAG+TGG 0.559749 4_1:+21222510 Msa0539880:CDS
AGGTTCAGGTGCTTTGACTG+GGG 0.560022 4_1:-21222338 None:intergenic
CTCGATGGAGAACACAATTG+GGG 0.564076 4_1:+21225561 Msa0539880:three_prime_UTR
TGAAAAGGAGGAGAAGAAAG+TGG 0.565300 4_1:+21222552 Msa0539880:CDS
TCAACTTCCTCTGGTACAGT+AGG 0.566190 4_1:-21222769 None:intergenic
ACCTGAAAAGGAGAAGAAAG+TGG 0.567059 4_1:+21222591 Msa0539880:CDS
TTCCCTTACTAGCTGATGAA+AGG 0.567165 4_1:+21222803 Msa0539880:CDS
GGTCAATAACATTATTGTGA+AGG 0.567851 4_1:+21225357 Msa0539880:three_prime_UTR
TTAGTCCTTTGTGTCAGGAA+AGG 0.568368 4_1:-21224030 None:intergenic
CTCCTTTCATCAGCTAGTAA+GGG 0.569186 4_1:-21222805 None:intergenic
AGTAACCTCCACTTCAGCAA+CGG 0.570780 4_1:-21222746 None:intergenic
GGAGAAGCCGGCAGAAGTGG+TGG 0.572616 4_1:+21222120 Msa0539880:CDS
TAATACCTTTCGCCAAATCA+CGG 0.574327 4_1:-21222902 None:intergenic
TATGGAGGACTGAGCAGAGA+GGG 0.576578 4_1:+21224708 Msa0539880:CDS
GTGTATCCATCTTCAGCACT+AGG 0.577666 4_1:-21225121 None:intergenic
AACAGTTTCAGAGCTTGTTG+TGG 0.578262 4_1:-21221993 None:intergenic
GAGAAAGAACAACAGGCTGA+TGG 0.581051 4_1:+21222019 Msa0539880:CDS
ACAAACCGTGATTTGGCGAA+AGG 0.583208 4_1:+21222897 Msa0539880:CDS
TTGTGTTCTCCATCGAGCAA+AGG 0.583320 4_1:-21225555 None:intergenic
TATAGCTCCTGAGCAAGTGC+CGG 0.584482 4_1:+21224680 Msa0539880:CDS
TGTTGAGTTCCCAGTTTCTG+AGG 0.586778 4_1:+21224797 Msa0539880:CDS
AGAGAACCAAGTTTGTCCGT+TGG 0.587433 4_1:+21223655 Msa0539880:CDS
TTATTGTGAAGGTTATTGGG+TGG 0.594403 4_1:+21225368 Msa0539880:three_prime_UTR
AAAGGAGGAGAAGAAAGTGG+AGG 0.596371 4_1:+21222555 Msa0539880:CDS
TTTGTGCCTAGTGCTGAAGA+TGG 0.598417 4_1:+21225115 Msa0539880:CDS
AACAGCTTCCTTATCAGTGG+TGG 0.602369 4_1:-21222074 None:intergenic
TGTTGTAGAACCTGAAAAGG+AGG 0.605095 4_1:+21222540 Msa0539880:CDS
GTGGATTGGAATGTGAGCTA+TGG 0.605535 4_1:+21225085 Msa0539880:CDS
TGTTTCGCACCTCAGAAACT+GGG 0.606381 4_1:-21224806 None:intergenic
GGTTTGGGAAGTAAGAGTTG+TGG 0.609162 4_1:+21225066 Msa0539880:CDS
ACTGATGGTACTGACAAAGA+AGG 0.609286 4_1:+21223555 Msa0539880:CDS
ATTAGCAACACCTTCAAAGT+CGG 0.613493 4_1:+21225193 Msa0539880:CDS
ACAAGAGTAGAGATACCAGA+TGG 0.618415 4_1:-21223723 None:intergenic
CCAGAGGAAGTTGAAATATG+GGG 0.622025 4_1:+21222778 Msa0539880:CDS
GGCTGATGTGGAGAAAGAAA+AGG 0.623341 4_1:+21222141 Msa0539880:CDS
TGTTGTTGTTGATGAAAGCA+AGG 0.624542 4_1:+21222177 Msa0539880:CDS
AGCAACAGCTTCCTTATCAG+TGG 0.627494 4_1:-21222077 None:intergenic
TGATAGTAACCTCAGTAGCA+GGG 0.629245 4_1:-21224755 None:intergenic
CTCAGTAGCAGGGTCAGCAG+TGG 0.635942 4_1:-21224745 None:intergenic
TGATCATCCTAGAAAAGGCA+AGG 0.637343 4_1:-21224005 None:intergenic
CAAGTGCCGGTTAAATATGG+AGG 0.638383 4_1:+21224693 Msa0539880:CDS
AGCTGCTGAGAAGAAAGTGG+AGG 0.643861 4_1:+21222513 Msa0539880:CDS
TGATCCTGTTGCTGATGAGG+CGG 0.646157 4_1:+21222099 Msa0539880:CDS
GTATCTGTTCCAGTTACGGA+AGG 0.647645 4_1:+21222703 Msa0539880:CDS
GGAACCCGTTGCTGAAGTGG+AGG 0.658824 4_1:+21222741 Msa0539880:CDS
AGTGGTGGCAGCGGTAACGG+CGG 0.658833 4_1:-21222059 None:intergenic
TCAGTCCTTTCCTGACACAA+AGG 0.662629 4_1:+21224025 Msa0539880:CDS
GGTTACTCCTACTGTACCAG+AGG 0.664697 4_1:+21222762 Msa0539880:CDS
TGAAAAGGAGAAGAAAGTGG+AGG 0.666714 4_1:+21222594 Msa0539880:CDS
GGAAGGTGAACAACCTGTTG+CGG 0.668549 4_1:+21222720 Msa0539880:CDS
GCTGCAAGTACCGAAGAAGA+CGG 0.668808 4_1:+21222646 Msa0539880:CDS
CCAAAGACTGAATCCACCAA+CGG 0.675567 4_1:-21223671 None:intergenic
TGATGTGGAGAAAGAAAAGG+TGG 0.713400 4_1:+21222144 Msa0539880:CDS
AGCAGCTTTAGGTTCCTCGG+AGG 0.718138 4_1:-21222497 None:intergenic
ATATGGAGGACTGAGCAGAG+AGG 0.746849 4_1:+21224707 Msa0539880:CDS
GAAAAGGCAAGGTACCACCA+AGG 0.749307 4_1:-21223994 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAATAAAATATAAGCAAAA+AGG - chr4_1:21223376-21223395 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTACTGA+AGG + chr4_1:21223409-21223428 Msa0539880:intron 10.0%
!!! TTTTTTTTTTTTTTACTGAA+GGG + chr4_1:21223410-21223429 Msa0539880:intron 10.0%
!!! TTTTTTCATATCAAATCAAA+TGG + chr4_1:21221937-21221956 Msa0539880:exon 15.0%
!! TTAACTCATATTAGAAATTT+AGG + chr4_1:21222980-21222999 Msa0539880:intron 15.0%
!! TTTATAGATCATACAAAAAA+AGG - chr4_1:21223117-21223136 None:intergenic 15.0%
!! TTCTTATATTTCATTCTAAA+GGG - chr4_1:21223296-21223315 None:intergenic 15.0%
!! TTTCTTATATTTCATTCTAA+AGG - chr4_1:21223297-21223316 None:intergenic 15.0%
!! AAAAAAAATTCATATGTACT+TGG - chr4_1:21223349-21223368 None:intergenic 15.0%
!!! TTTTTTTTTTTTTACTGAAG+GGG + chr4_1:21223411-21223430 Msa0539880:intron 15.0%
!! ATTAATATGATTGCTTAATT+TGG + chr4_1:21223927-21223946 Msa0539880:intron 15.0%
!!! GTTACTTATATTCTTTTATA+GGG + chr4_1:21225391-21225410 Msa0539880:three_prime_UTR 15.0%
!!! ATTATATTTTGTTTCAAGTA+TGG + chr4_1:21225438-21225457 Msa0539880:three_prime_UTR 15.0%
!!! TTATATTTTGTTTCAAGTAT+GGG + chr4_1:21225439-21225458 Msa0539880:three_prime_UTR 15.0%
!! TCAATATTCTTAAATTAATG+TGG + chr4_1:21225499-21225518 Msa0539880:three_prime_UTR 15.0%
!! AGAAAGAAAAAGTGATATTA+GGG - chr4_1:21221880-21221899 None:intergenic 20.0%
!! AAGAAAGAAAAAGTGATATT+AGG - chr4_1:21221881-21221900 None:intergenic 20.0%
!! AAAAGAGTGATATGATATTA+GGG - chr4_1:21221921-21221940 None:intergenic 20.0%
!! AAAAAGAGTGATATGATATT+AGG - chr4_1:21221922-21221941 None:intergenic 20.0%
!!! TCATACAAAAAAAGGTTTTA+CGG - chr4_1:21223109-21223128 None:intergenic 20.0%
!!! ACTCTTTTCATAAGTTATAT+TGG + chr4_1:21223136-21223155 Msa0539880:intron 20.0%
!! TATATAAGTTTCTTACAAAC+AGG + chr4_1:21223195-21223214 Msa0539880:intron 20.0%
!!! GTTTGTTAATAATTTGTTAC+TGG + chr4_1:21223436-21223455 Msa0539880:intron 20.0%
!! CTTATTGTATCTGTAATTTA+AGG + chr4_1:21223470-21223489 Msa0539880:intron 20.0%
!! TATCTGTAATTTAAGGAATT+CGG + chr4_1:21223477-21223496 Msa0539880:intron 20.0%
!! CAAAAACATTGTAATAAACA+GGG - chr4_1:21223584-21223603 None:intergenic 20.0%
!! ATTATTATTACCAACTTACA+AGG + chr4_1:21224199-21224218 Msa0539880:intron 20.0%
!!! AAATTTAAAACCTTGTAAGT+TGG - chr4_1:21224212-21224231 None:intergenic 20.0%
!!! ATCAATTTTTCTCAATATCA+GGG - chr4_1:21224320-21224339 None:intergenic 20.0%
!! AGCTCTTATTGATAAATATT+TGG + chr4_1:21224646-21224665 Msa0539880:intron 20.0%
!! ATAAGATTGTATATCAAACA+AGG - chr4_1:21224833-21224852 None:intergenic 20.0%
!! AATTATGAATATAAGAATCG+TGG - chr4_1:21225005-21225024 None:intergenic 20.0%
!!! GGTTACTTATATTCTTTTAT+AGG + chr4_1:21225390-21225409 Msa0539880:three_prime_UTR 20.0%
!!! TATATTTTGTTTCAAGTATG+GGG + chr4_1:21225440-21225459 Msa0539880:three_prime_UTR 20.0%
! AAAAAGGTTGAAGAAGAAAA+AGG + chr4_1:21222469-21222488 Msa0539880:CDS 25.0%
! CCAAAAACATTGTAATAAAC+AGG - chr4_1:21223585-21223604 None:intergenic 25.0%
!! CCTGTTTATTACAATGTTTT+TGG + chr4_1:21223582-21223601 Msa0539880:CDS 25.0%
! AATGATCTTAAAAATTCTCC+TGG + chr4_1:21223753-21223772 Msa0539880:CDS 25.0%
!!! TATGATGAAAGCACTAAAAA+AGG - chr4_1:21224123-21224142 None:intergenic 25.0%
!! AAGCAATTTAAAACTTCATG+TGG - chr4_1:21224274-21224293 None:intergenic 25.0%
!! CATCAATTTTTCTCAATATC+AGG - chr4_1:21224321-21224340 None:intergenic 25.0%
!! TAAGATTTTATAGGAAGTCT+AGG - chr4_1:21224496-21224515 None:intergenic 25.0%
!! AGTATCTCGTAAGATTTTAT+AGG - chr4_1:21224505-21224524 None:intergenic 25.0%
!! TACTACTACAATTGTAGTTT+TGG + chr4_1:21224521-21224540 Msa0539880:intron 25.0%
!!! GTATTTGCAGACAATTTTTT+TGG + chr4_1:21224569-21224588 Msa0539880:intron 25.0%
! CTTAAATATGATCCTTATGA+TGG + chr4_1:21224856-21224875 Msa0539880:intron 25.0%
!! CACAATTTAAAACCATCATA+AGG - chr4_1:21224871-21224890 None:intergenic 25.0%
!!! CTTATGATGGTTTTAAATTG+TGG + chr4_1:21224869-21224888 Msa0539880:intron 25.0%
! TTTCACATTGACAAGAAAAA+GGG + chr4_1:21225315-21225334 Msa0539880:three_prime_UTR 25.0%
! AACATTATTGTGAAGGTTAT+TGG + chr4_1:21225364-21225383 Msa0539880:three_prime_UTR 25.0%
! ACATTATTGTGAAGGTTATT+GGG + chr4_1:21225365-21225384 Msa0539880:three_prime_UTR 25.0%
!! ATAGGGATATTTTCTTCATT+TGG + chr4_1:21225408-21225427 Msa0539880:three_prime_UTR 25.0%
!! GGTATTTTGTTCTTTTGTAT+TGG + chr4_1:21225520-21225539 Msa0539880:three_prime_UTR 25.0%
TGATATTAGGGTTAAGGTTA+AGG - chr4_1:21221909-21221928 None:intergenic 30.0%
GTGATATGATATTAGGGTTA+AGG - chr4_1:21221915-21221934 None:intergenic 30.0%
!! TTCTCAATCGGTTTCTTTTA+AGG + chr4_1:21222201-21222220 Msa0539880:CDS 30.0%
!! TTTTAAGGAAGAAACTAACG+TGG + chr4_1:21222216-21222235 Msa0539880:CDS 30.0%
! CACTTCTTCTTTCTTTTCTT+CGG - chr4_1:21222413-21222432 None:intergenic 30.0%
GAAATTTAGGCATGTTTGAA+TGG + chr4_1:21222993-21223012 Msa0539880:intron 30.0%
! TAAGTTATATTGGAGTGCTT+AGG + chr4_1:21223146-21223165 Msa0539880:intron 30.0%
! AAGTTATATTGGAGTGCTTA+GGG + chr4_1:21223147-21223166 Msa0539880:intron 30.0%
TTCCAAAAATCGATGAAGAA+AGG - chr4_1:21223881-21223900 None:intergenic 30.0%
! AGATTTTCATCAATGTTCCT+TGG + chr4_1:21223977-21223996 Msa0539880:intron 30.0%
AAGAGCAAATTTGTATTTGC+TGG + chr4_1:21224051-21224070 Msa0539880:CDS 30.0%
AGAAAGGACTTACTTGAAAA+GGG - chr4_1:21224097-21224116 None:intergenic 30.0%
AAGAAAGGACTTACTTGAAA+AGG - chr4_1:21224098-21224117 None:intergenic 30.0%
!!! ATGTTTTTTAGCCCATAAGA+AGG + chr4_1:21224153-21224172 Msa0539880:intron 30.0%
AATAGCAATATGTGTGTTTG+TGG - chr4_1:21224182-21224201 None:intergenic 30.0%
CAAATATGTGTGTACGTTTA+TGG - chr4_1:21224235-21224254 None:intergenic 30.0%
ATATCAGGGATCATAACAAA+AGG - chr4_1:21224306-21224325 None:intergenic 30.0%
CAAGCAAAACTACAATATCA+AGG - chr4_1:21224469-21224488 None:intergenic 30.0%
!!! GACAATTTTTTTGGACCTTT+AGG + chr4_1:21224578-21224597 Msa0539880:intron 30.0%
ACTGCAAACCTTTATATTGT+GGG + chr4_1:21224908-21224927 Msa0539880:intron 30.0%
! CACATTTTCCCACAATATAA+AGG - chr4_1:21224919-21224938 None:intergenic 30.0%
CTTTATATTGTGGGAAAATG+TGG + chr4_1:21224917-21224936 Msa0539880:intron 30.0%
! AAAGCCTTTTACTCAGAAAT+GGG - chr4_1:21225298-21225317 None:intergenic 30.0%
CTTTCACATTGACAAGAAAA+AGG + chr4_1:21225314-21225333 Msa0539880:three_prime_UTR 30.0%
! GGTGTTTTGTATTCATTACA+AGG + chr4_1:21225336-21225355 Msa0539880:three_prime_UTR 30.0%
GGTCAATAACATTATTGTGA+AGG + chr4_1:21225357-21225376 Msa0539880:three_prime_UTR 30.0%
! GTTTGAAGTTGGAGACAATT+GGG - chr4_1:21221817-21221836 None:intergenic 35.0%
TGTTGTTGAGAAAGAACAAC+AGG + chr4_1:21222012-21222031 Msa0539880:CDS 35.0%
! TGTTGTTGTTGATGAAAGCA+AGG + chr4_1:21222177-21222196 Msa0539880:CDS 35.0%
TGAAAGCAAGGTTTCTCAAT+CGG + chr4_1:21222189-21222208 Msa0539880:CDS 35.0%
!!! AGTGCTTTTTTCTGAACTTC+TGG - chr4_1:21222253-21222272 None:intergenic 35.0%
! GTTTTCTTGTCATCTTCTTC+AGG - chr4_1:21222391-21222410 None:intergenic 35.0%
CGAAGAAAAGAAAGAAGAAG+TGG + chr4_1:21222411-21222430 Msa0539880:CDS 35.0%
AGCAGTAGTTGAAGAGAAAA+AGG + chr4_1:21222453-21222472 Msa0539880:CDS 35.0%
AACTGTTGTAGAACCTGAAA+AGG + chr4_1:21222537-21222556 Msa0539880:CDS 35.0%
AACTGTTGTAGAACCTGAAA+AGG + chr4_1:21222537-21222556 Msa0539880:CDS 35.0%
GCTTTCTTGAATAGCTTCAA+CGG - chr4_1:21222680-21222699 None:intergenic 35.0%
CATAGTATCTGTTCCAGTTA+CGG + chr4_1:21222699-21222718 Msa0539880:CDS 35.0%
TACCAGAGGAAGTTGAAATA+TGG + chr4_1:21222776-21222795 Msa0539880:CDS 35.0%
ACCAGAGGAAGTTGAAATAT+GGG + chr4_1:21222777-21222796 Msa0539880:CDS 35.0%
TGATCAAACAAACCGTGATT+TGG + chr4_1:21222890-21222909 Msa0539880:CDS 35.0%
TAATACCTTTCGCCAAATCA+CGG - chr4_1:21222905-21222924 None:intergenic 35.0%
AGGGATTGCTAACTAACTTT+GGG - chr4_1:21223277-21223296 None:intergenic 35.0%
AAGGGATTGCTAACTAACTT+TGG - chr4_1:21223278-21223297 None:intergenic 35.0%
AAGAAGATCTTGGAACTGAT+TGG + chr4_1:21223517-21223536 Msa0539880:CDS 35.0%
AGAAGATCTTGGAACTGATT+GGG + chr4_1:21223518-21223537 Msa0539880:CDS 35.0%
!! GACAAAGTTGTTTTCACTGA+TGG + chr4_1:21223540-21223559 Msa0539880:CDS 35.0%
!!! CAATGTTTTTGGTGAGTTTG+AGG + chr4_1:21223593-21223612 Msa0539880:CDS 35.0%
! TTTTGGTGAGTTTGAGGATA+AGG + chr4_1:21223599-21223618 Msa0539880:CDS 35.0%
!! AGTCTTTGGAGAAAAGTGTT+AGG + chr4_1:21223685-21223704 Msa0539880:CDS 35.0%
AAGGAGAATTCAAACCTGTT+TGG - chr4_1:21223862-21223881 None:intergenic 35.0%
!!! CTCCTTTCTTCATCGATTTT+TGG + chr4_1:21223876-21223895 Msa0539880:intron 35.0%
!!! TCGATTTTTGGAACATGTTG+TGG + chr4_1:21223888-21223907 Msa0539880:intron 35.0%
! TTTTCATCAATGTTCCTTGG+TGG + chr4_1:21223980-21223999 Msa0539880:CDS 35.0%
GCACTAAAAAAGGTGAAGAA+AGG - chr4_1:21224113-21224132 None:intergenic 35.0%
TTAATAGCGTATGCTCCTAA+AGG - chr4_1:21224596-21224615 None:intergenic 35.0%
!! TCAACAGCATGTTTTGTTGT+TGG - chr4_1:21224783-21224802 None:intergenic 35.0%
TTAAATTGTGGTCTATGTCG+TGG + chr4_1:21224881-21224900 Msa0539880:intron 35.0%
CACTGCAAACCTTTATATTG+TGG + chr4_1:21224907-21224926 Msa0539880:intron 35.0%
ATTAGCAACACCTTCAAAGT+CGG + chr4_1:21225193-21225212 Msa0539880:CDS 35.0%
CTTGGATGTTTGGTTATCAA+TGG - chr4_1:21225242-21225261 None:intergenic 35.0%
! GCTTCTTTTTCTTGGATGTT+TGG - chr4_1:21225252-21225271 None:intergenic 35.0%
! GTAAAGCAGCTTCTTTTTCT+TGG - chr4_1:21225260-21225279 None:intergenic 35.0%
! AGAAAAAGAAGCTGCTTTAC+AGG + chr4_1:21225260-21225279 Msa0539880:CDS 35.0%
! CTTTTACTCAGAAATGGGTA+TGG - chr4_1:21225293-21225312 None:intergenic 35.0%
CATACCCATTTCTGAGTAAA+AGG + chr4_1:21225291-21225310 Msa0539880:exon 35.0%
! GAAAGCCTTTTACTCAGAAA+TGG - chr4_1:21225299-21225318 None:intergenic 35.0%
TTATTGTGAAGGTTATTGGG+TGG + chr4_1:21225368-21225387 Msa0539880:three_prime_UTR 35.0%
TATTGTGAAGGTTATTGGGT+GGG + chr4_1:21225369-21225388 Msa0539880:three_prime_UTR 35.0%
!! TTTTGTTTCAAGTATGGGGT+TGG + chr4_1:21225444-21225463 Msa0539880:three_prime_UTR 35.0%
! TTTGTTTCAAGTATGGGGTT+GGG + chr4_1:21225445-21225464 Msa0539880:three_prime_UTR 35.0%
! GGTTTGAAGTTGGAGACAAT+TGG - chr4_1:21221818-21221837 None:intergenic 40.0%
! ATAGAGAGAGTGTGAGAGAT+GGG - chr4_1:21221839-21221858 None:intergenic 40.0%
! TATAGAGAGAGTGTGAGAGA+TGG - chr4_1:21221840-21221859 None:intergenic 40.0%
! ACTTCTTCAGCAGGTTTTTG+GGG - chr4_1:21221971-21221990 None:intergenic 40.0%
! CACTTCTTCAGCAGGTTTTT+GGG - chr4_1:21221972-21221991 None:intergenic 40.0%
!! AACAGTTTCAGAGCTTGTTG+TGG - chr4_1:21221996-21222015 None:intergenic 40.0%
TGATGTGGAGAAAGAAAAGG+TGG + chr4_1:21222144-21222163 Msa0539880:CDS 40.0%
! TCTTCTTTTGCAGCTACTTC+AGG - chr4_1:21222361-21222380 None:intergenic 40.0%
ACTTTCTTCTCAGCAGCTTT+AGG - chr4_1:21222511-21222530 None:intergenic 40.0%
TAAAGCTGCTGAGAAGAAAG+TGG + chr4_1:21222510-21222529 Msa0539880:CDS 40.0%
TGTTGTAGAACCTGAAAAGG+AGG + chr4_1:21222540-21222559 Msa0539880:CDS 40.0%
! ACTTTCTTCTCCTCCTTTTC+AGG - chr4_1:21222553-21222572 None:intergenic 40.0%
TGAAAAGGAGGAGAAGAAAG+TGG + chr4_1:21222552-21222571 Msa0539880:CDS 40.0%
ACCTGAAAAGGAGAAGAAAG+TGG + chr4_1:21222591-21222610 Msa0539880:CDS 40.0%
! TCCACTTTCTTCTCCTTTTC+AGG - chr4_1:21222595-21222614 None:intergenic 40.0%
TGAAAAGGAGAAGAAAGTGG+AGG + chr4_1:21222594-21222613 Msa0539880:CDS 40.0%
CCAGAGGAAGTTGAAATATG+GGG + chr4_1:21222778-21222797 Msa0539880:CDS 40.0%
TTCCCTTACTAGCTGATGAA+AGG + chr4_1:21222803-21222822 Msa0539880:CDS 40.0%
CTCCTTTCATCAGCTAGTAA+GGG - chr4_1:21222808-21222827 None:intergenic 40.0%
ACTCCTTTCATCAGCTAGTA+AGG - chr4_1:21222809-21222828 None:intergenic 40.0%
TTCTCAAATTCCTGAGAGCA+AGG + chr4_1:21222839-21222858 Msa0539880:CDS 40.0%
TCTCAAATTCCTGAGAGCAA+GGG + chr4_1:21222840-21222859 Msa0539880:CDS 40.0%
!!! AGCAAGGGATTTTAAGGTGA+AGG + chr4_1:21222855-21222874 Msa0539880:CDS 40.0%
!!! AAGGGATTTTAAGGTGAAGG+AGG + chr4_1:21222858-21222877 Msa0539880:CDS 40.0%
!! ACTGATGGTACTGACAAAGA+AGG + chr4_1:21223555-21223574 Msa0539880:CDS 40.0%
ACAAGAGTAGAGATACCAGA+TGG - chr4_1:21223726-21223745 None:intergenic 40.0%
AATTCTCCTGGACTTCTTGT+TGG + chr4_1:21223765-21223784 Msa0539880:CDS 40.0%
TTCTTACCAACAAGAAGTCC+AGG - chr4_1:21223774-21223793 None:intergenic 40.0%
TGATCATCCTAGAAAAGGCA+AGG - chr4_1:21224008-21224027 None:intergenic 40.0%
AGGACTGATCATCCTAGAAA+AGG - chr4_1:21224013-21224032 None:intergenic 40.0%
TTAGTCCTTTGTGTCAGGAA+AGG - chr4_1:21224033-21224052 None:intergenic 40.0%
GAAAAGGGTTTCAGCAGATT+TGG - chr4_1:21224082-21224101 None:intergenic 40.0%
GTTTGTGGCAACCTTCTTAT+GGG - chr4_1:21224167-21224186 None:intergenic 40.0%
TGTTTGTGGCAACCTTCTTA+TGG - chr4_1:21224168-21224187 None:intergenic 40.0%
CTCAGTCCTCCATATTTAAC+CGG - chr4_1:21224702-21224721 None:intergenic 40.0%
TGATAGTAACCTCAGTAGCA+GGG - chr4_1:21224758-21224777 None:intergenic 40.0%
! TTGATAGTAACCTCAGTAGC+AGG - chr4_1:21224759-21224778 None:intergenic 40.0%
! CCACAATATTGCGGATTTTG+AGG - chr4_1:21224963-21224982 None:intergenic 40.0%
CCTCAAAATCCGCAATATTG+TGG + chr4_1:21224960-21224979 Msa0539880:intron 40.0%
!! GAATGTGCAGAAAAGCACTT+TGG + chr4_1:21225045-21225064 Msa0539880:intron 40.0%
!! TGCAGAAAAGCACTTTGGTT+TGG + chr4_1:21225050-21225069 Msa0539880:intron 40.0%
!! GCAGAAAAGCACTTTGGTTT+GGG + chr4_1:21225051-21225070 Msa0539880:intron 40.0%
CTGTGATAATCCAGAAGAAC+AGG + chr4_1:21225143-21225162 Msa0539880:CDS 40.0%
! CAGCAATTTTCCTGTTCTTC+TGG - chr4_1:21225156-21225175 None:intergenic 40.0%
ATGGTGAGTATAACCTTTCC+AGG - chr4_1:21225223-21225242 None:intergenic 40.0%
TGAATGAAACCTTTGCTCGA+TGG + chr4_1:21225546-21225565 Msa0539880:three_prime_UTR 40.0%
GTTGGAGACAATTGGGCTTT+GGG - chr4_1:21221810-21221829 None:intergenic 45.0%
AGTTGGAGACAATTGGGCTT+TGG - chr4_1:21221811-21221830 None:intergenic 45.0%
! GTGAGAGATGGGTTTGAAGT+TGG - chr4_1:21221828-21221847 None:intergenic 45.0%
! CCACTTCTTCAGCAGGTTTT+TGG - chr4_1:21221973-21221992 None:intergenic 45.0%
CCAAAAACCTGCTGAAGAAG+TGG + chr4_1:21221970-21221989 Msa0539880:CDS 45.0%
GAGAAAGAACAACAGGCTGA+TGG + chr4_1:21222019-21222038 Msa0539880:CDS 45.0%
AACAGCTTCCTTATCAGTGG+TGG - chr4_1:21222077-21222096 None:intergenic 45.0%
AGCAACAGCTTCCTTATCAG+TGG - chr4_1:21222080-21222099 None:intergenic 45.0%
GGCTGATGTGGAGAAAGAAA+AGG + chr4_1:21222141-21222160 Msa0539880:CDS 45.0%
! TTTGCAGCTACTTCAGGTTC+AGG - chr4_1:21222355-21222374 None:intergenic 45.0%
AGAAAAAGGTTCTACCTCCG+AGG + chr4_1:21222483-21222502 Msa0539880:CDS 45.0%
AAAGGAGGAGAAGAAAGTGG+AGG + chr4_1:21222555-21222574 Msa0539880:CDS 45.0%
GTATCTGTTCCAGTTACGGA+AGG + chr4_1:21222703-21222722 Msa0539880:CDS 45.0%
AGTAACCTCCACTTCAGCAA+CGG - chr4_1:21222749-21222768 None:intergenic 45.0%
TCAACTTCCTCTGGTACAGT+AGG - chr4_1:21222772-21222791 None:intergenic 45.0%
CCCCATATTTCAACTTCCTC+TGG - chr4_1:21222781-21222800 None:intergenic 45.0%
CCTTAAAATCCCTTGCTCTC+AGG - chr4_1:21222852-21222871 None:intergenic 45.0%
! CCTGAGAGCAAGGGATTTTA+AGG + chr4_1:21222849-21222868 Msa0539880:CDS 45.0%
! ACAAACCGTGATTTGGCGAA+AGG + chr4_1:21222897-21222916 Msa0539880:CDS 45.0%
GCGCTTCTTCAAGAAGATCT+TGG + chr4_1:21223507-21223526 Msa0539880:CDS 45.0%
AGAGAACCAAGTTTGTCCGT+TGG + chr4_1:21223655-21223674 Msa0539880:CDS 45.0%
AATCCACCAACGGACAAACT+TGG - chr4_1:21223664-21223683 None:intergenic 45.0%
CCAAAGACTGAATCCACCAA+CGG - chr4_1:21223674-21223693 None:intergenic 45.0%
AAACTCGACTTTGCTCCATC+TGG + chr4_1:21223708-21223727 Msa0539880:CDS 45.0%
TCCTGAATTCGTAGCCAAAC+AGG + chr4_1:21223845-21223864 Msa0539880:CDS 45.0%
ACCTGTTTGGCTACGAATTC+AGG - chr4_1:21223849-21223868 None:intergenic 45.0%
TCAGTCCTTTCCTGACACAA+AGG + chr4_1:21224025-21224044 Msa0539880:CDS 45.0%
TGCTCTTAGTCCTTTGTGTC+AGG - chr4_1:21224038-21224057 None:intergenic 45.0%
AAGGGTTTCAGCAGATTTGG+AGG - chr4_1:21224079-21224098 None:intergenic 45.0%
CTCCGCAATATCAAGGATTG+CGG - chr4_1:21224378-21224397 None:intergenic 45.0%
CATGACTCTCCGCAATATCA+AGG - chr4_1:21224385-21224404 None:intergenic 45.0%
CTTGATATTGCGGAGAGTCA+TGG + chr4_1:21224383-21224402 Msa0539880:intron 45.0%
TATTTAACCGGCACTTGCTC+AGG - chr4_1:21224690-21224709 None:intergenic 45.0%
!! GAGCAAGTGCCGGTTAAATA+TGG + chr4_1:21224690-21224709 Msa0539880:CDS 45.0%
!! CAAGTGCCGGTTAAATATGG+AGG + chr4_1:21224693-21224712 Msa0539880:CDS 45.0%
TGTTGAGTTCCCAGTTTCTG+AGG + chr4_1:21224797-21224816 Msa0539880:CDS 45.0%
TGTTTCGCACCTCAGAAACT+GGG - chr4_1:21224809-21224828 None:intergenic 45.0%
TTGTTTCGCACCTCAGAAAC+TGG - chr4_1:21224810-21224829 None:intergenic 45.0%
TAACTGCGGCCACAATATTG+CGG - chr4_1:21224972-21224991 None:intergenic 45.0%
CAATATTGTGGCCGCAGTTA+CGG + chr4_1:21224972-21224991 Msa0539880:intron 45.0%
GGTTTGGGAAGTAAGAGTTG+TGG + chr4_1:21225066-21225085 Msa0539880:CDS 45.0%
GGGAAGTAAGAGTTGTGGAT+TGG + chr4_1:21225071-21225090 Msa0539880:CDS 45.0%
!! GTGGATTGGAATGTGAGCTA+TGG + chr4_1:21225085-21225104 Msa0539880:CDS 45.0%
! TTTGTGCCTAGTGCTGAAGA+TGG + chr4_1:21225115-21225134 Msa0539880:CDS 45.0%
GTGTATCCATCTTCAGCACT+AGG - chr4_1:21225124-21225143 None:intergenic 45.0%
CTCAGAAATGGGTATGGTCT+TGG - chr4_1:21225287-21225306 None:intergenic 45.0%
TTGTGTTCTCCATCGAGCAA+AGG - chr4_1:21225558-21225577 None:intergenic 45.0%
TGCTCGATGGAGAACACAAT+TGG + chr4_1:21225559-21225578 Msa0539880:three_prime_UTR 45.0%
GCTCGATGGAGAACACAATT+GGG + chr4_1:21225560-21225579 Msa0539880:three_prime_UTR 45.0%
CTCGATGGAGAACACAATTG+GGG + chr4_1:21225561-21225580 Msa0539880:three_prime_UTR 45.0%
TTCCTTATCAGTGGTGGCAG+CGG - chr4_1:21222071-21222090 None:intergenic 50.0%
TGCTGATCCTGTTGCTGATG+AGG + chr4_1:21222096-21222115 Msa0539880:CDS 50.0%
TGATCCTGTTGCTGATGAGG+CGG + chr4_1:21222099-21222118 Msa0539880:CDS 50.0%
AGGTTCAGGTGCTTTGACTG+GGG - chr4_1:21222341-21222360 None:intergenic 50.0%
CAGGTTCAGGTGCTTTGACT+GGG - chr4_1:21222342-21222361 None:intergenic 50.0%
TCAGGTTCAGGTGCTTTGAC+TGG - chr4_1:21222343-21222362 None:intergenic 50.0%
!! CTCAGCAGCTTTAGGTTCCT+CGG - chr4_1:21222503-21222522 None:intergenic 50.0%
AGCTGCTGAGAAGAAAGTGG+AGG + chr4_1:21222513-21222532 Msa0539880:CDS 50.0%
!! GCTGCAAGTACCGAAGAAGA+CGG + chr4_1:21222646-21222665 Msa0539880:CDS 50.0%
! GGTTTTTGCGCCGTCTTCTT+CGG - chr4_1:21222659-21222678 None:intergenic 50.0%
GGTTGTTCACCTTCCGTAAC+TGG - chr4_1:21222715-21222734 None:intergenic 50.0%
GGAAGGTGAACAACCTGTTG+CGG + chr4_1:21222720-21222739 Msa0539880:CDS 50.0%
GTAACCTCCACTTCAGCAAC+GGG - chr4_1:21222748-21222767 None:intergenic 50.0%
GGTTACTCCTACTGTACCAG+AGG + chr4_1:21222762-21222781 Msa0539880:CDS 50.0%
GAACCAAGTTTGTCCGTTGG+TGG + chr4_1:21223658-21223677 Msa0539880:CDS 50.0%
!! CCGTTGGTGGATTCAGTCTT+TGG + chr4_1:21223671-21223690 Msa0539880:CDS 50.0%
! GAAAAGGCAAGGTACCACCA+AGG - chr4_1:21223997-21224016 None:intergenic 50.0%
! GGTGGTACCTTGCCTTTTCT+AGG + chr4_1:21223998-21224017 Msa0539880:CDS 50.0%
CGCCGCAATCCTTGATATTG+CGG + chr4_1:21224373-21224392 Msa0539880:intron 50.0%
CGGAGAGTCATGGTCAAATG+CGG + chr4_1:21224393-21224412 Msa0539880:intron 50.0%
TATAGCTCCTGAGCAAGTGC+CGG + chr4_1:21224680-21224699 Msa0539880:CDS 50.0%
ATATGGAGGACTGAGCAGAG+AGG + chr4_1:21224707-21224726 Msa0539880:CDS 50.0%
TATGGAGGACTGAGCAGAGA+GGG + chr4_1:21224708-21224727 Msa0539880:CDS 50.0%
ATGTGGTTGCAATGCCGTTG+CGG + chr4_1:21224934-21224953 Msa0539880:intron 50.0%
!!! GGATTTTGAGGTCTCCGCAA+CGG - chr4_1:21224951-21224970 None:intergenic 50.0%
GTGGTCAACAACCGTAACTG+CGG - chr4_1:21224986-21225005 None:intergenic 50.0%
GTTGTGGCCACTTCTTCAGC+AGG - chr4_1:21221980-21221999 None:intergenic 55.0%
ATCAGTGGTGGCAGCGGTAA+CGG - chr4_1:21222065-21222084 None:intergenic 55.0%
TACCGCTGCCACCACTGATA+AGG + chr4_1:21222066-21222085 Msa0539880:CDS 55.0%
TTCTCCGCCTCATCAGCAAC+AGG - chr4_1:21222106-21222125 None:intergenic 55.0%
ACATCAGCCACCACTTCTGC+CGG - chr4_1:21222130-21222149 None:intergenic 55.0%
TTCAGGTGCTTTGACTGGGG+CGG - chr4_1:21222338-21222357 None:intergenic 55.0%
!! AGCAGCTTTAGGTTCCTCGG+AGG - chr4_1:21222500-21222519 None:intergenic 55.0%
TGCGGCGCGACTTAAAGCTT+TGG - chr4_1:21224360-21224379 None:intergenic 55.0%
ACCTTCAAAGTCGGCGAACC+TGG + chr4_1:21225202-21225221 Msa0539880:CDS 55.0%
!! TCCAGGTTCGCCGACTTTGA+AGG - chr4_1:21225206-21225225 None:intergenic 55.0%
CAAAGTCGGCGAACCTGGAA+AGG + chr4_1:21225207-21225226 Msa0539880:CDS 55.0%
TGCTGATGAGGCGGAGAAGC+CGG + chr4_1:21222108-21222127 Msa0539880:CDS 60.0%
GGCAGAAGTGGTGGCTGATG+TGG + chr4_1:21222129-21222148 Msa0539880:CDS 60.0%
TCAGGTGCTTTGACTGGGGC+GGG - chr4_1:21222337-21222356 None:intergenic 60.0%
! TCAGCAACGGGTTCCGCAAC+AGG - chr4_1:21222736-21222755 None:intergenic 60.0%
TGCGGAACCCGTTGCTGAAG+TGG + chr4_1:21222738-21222757 Msa0539880:CDS 60.0%
GGAACCCGTTGCTGAAGTGG+AGG + chr4_1:21222741-21222760 Msa0539880:CDS 60.0%
CTCAGTAGCAGGGTCAGCAG+TGG - chr4_1:21224748-21224767 None:intergenic 60.0%
CACTGCTGACCCTGCTACTG+AGG + chr4_1:21224746-21224765 Msa0539880:CDS 60.0%
! AGTGGTGGCAGCGGTAACGG+CGG - chr4_1:21222062-21222081 None:intergenic 65.0%
GGAGAAGCCGGCAGAAGTGG+TGG + chr4_1:21222120-21222139 Msa0539880:CDS 65.0%
GGCGGAGAAGCCGGCAGAAG+TGG + chr4_1:21222117-21222136 Msa0539880:CDS 70.0%
GCTTTGACTGGGGCGGGTGG+AGG - chr4_1:21222331-21222350 None:intergenic 70.0%
GGTGCTTTGACTGGGGCGGG+TGG - chr4_1:21222334-21222353 None:intergenic 70.0%
! GGCAGCGGTAACGGCGGCAG+CGG - chr4_1:21222056-21222075 None:intergenic 75.0%
GACTGGGGCGGGTGGAGGAG+CGG - chr4_1:21222326-21222345 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 21221777 21225633 21221777 ID=Msa0539880;Name=Msa0539880
chr4_1 mRNA 21221777 21225633 21221777 ID=Msa0539880-mRNA-1;Parent=Msa0539880;Name=Msa0539880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=179|1|1|1|1|1|5|324|619
chr4_1 exon 21221777 21222918 21221777 ID=Msa0539880-mRNA-1:exon:6065;Parent=Msa0539880-mRNA-1
chr4_1 exon 21223492 21223866 21223492 ID=Msa0539880-mRNA-1:exon:6066;Parent=Msa0539880-mRNA-1
chr4_1 exon 21223979 21224103 21223979 ID=Msa0539880-mRNA-1:exon:6067;Parent=Msa0539880-mRNA-1
chr4_1 exon 21224677 21224818 21224677 ID=Msa0539880-mRNA-1:exon:6068;Parent=Msa0539880-mRNA-1
chr4_1 exon 21225055 21225633 21225055 ID=Msa0539880-mRNA-1:exon:6069;Parent=Msa0539880-mRNA-1
chr4_1 five_prime_UTR 21221777 21221955 21221777 ID=Msa0539880-mRNA-1:five_prime_utr;Parent=Msa0539880-mRNA-1
chr4_1 CDS 21221956 21222918 21221956 ID=Msa0539880-mRNA-1:cds;Parent=Msa0539880-mRNA-1
chr4_1 CDS 21223492 21223866 21223492 ID=Msa0539880-mRNA-1:cds;Parent=Msa0539880-mRNA-1
chr4_1 CDS 21223979 21224103 21223979 ID=Msa0539880-mRNA-1:cds;Parent=Msa0539880-mRNA-1
chr4_1 CDS 21224677 21224818 21224677 ID=Msa0539880-mRNA-1:cds;Parent=Msa0539880-mRNA-1
chr4_1 CDS 21225055 21225309 21225055 ID=Msa0539880-mRNA-1:cds;Parent=Msa0539880-mRNA-1
chr4_1 three_prime_UTR 21225310 21225633 21225310 ID=Msa0539880-mRNA-1:three_prime_utr;Parent=Msa0539880-mRNA-1
Gene Sequence

>Msa0539880

ATGGCTGCTGAACCCCAAAAACCTGCTGAAGAAGTGGCCACAACAAGCTCTGAAACTGTTGTTGAGAAAGAACAACAGGCTGATGGAGTTGTAGCTGCCGCTGCCGCCGTTACCGCTGCCACCACTGATAAGGAAGCTGTTGCTGATCCTGTTGCTGATGAGGCGGAGAAGCCGGCAGAAGTGGTGGCTGATGTGGAGAAAGAAAAGGTGGCAGATGAAGCTGTTGTTGTTGATGAAAGCAAGGTTTCTCAATCGGTTTCTTTTAAGGAAGAAACTAACGTGGTTTCTGAACTTCCAGAAGTTCAGAAAAAAGCACTTGATGAACTTAAACAGCTTATTCAAGAAGCGCTTAACAAACATGAATTCTCCGCTCCTCCACCCGCCCCAGTCAAAGCACCTGAACCTGAAGTAGCTGCAAAAGAAGAGAAAAAACCTGAAGAAGATGACAAGAAAACCGAAGAAAAGAAAGAAGAAGTGGCAGAAGAGAAGAAAGATGAAGCAGTAGTTGAAGAGAAAAAGGTTGAAGAAGAAAAAGGTTCTACCTCCGAGGAACCTAAAGCTGCTGAGAAGAAAGTGGAGGAAACTGTTGTAGAACCTGAAAAGGAGGAGAAGAAAGTGGAGGAAACTGTTGTAGAACCTGAAAAGGAGAAGAAAGTGGAGGAAACTGTTGTAGAAGTTGTTGAGAAAATAGCTGCAAGTACCGAAGAAGACGGCGCAAAAACCGTTGAAGCTATTCAAGAAAGCATAGTATCTGTTCCAGTTACGGAAGGTGAACAACCTGTTGCGGAACCCGTTGCTGAAGTGGAGGTTACTCCTACTGTACCAGAGGAAGTTGAAATATGGGGAATTCCCTTACTAGCTGATGAAAGGAGTGATGTGATTCTTCTCAAATTCCTGAGAGCAAGGGATTTTAAGGTGAAGGAGGCTTTCACTATGATCAAACAAACCGTGATTTGGCGAAAGGAATTCGGAGTCGAAGCGCTTCTTCAAGAAGATCTTGGAACTGATTGGGACAAAGTTGTTTTCACTGATGGTACTGACAAAGAAGGTCACCCTGTTTATTACAATGTTTTTGGTGAGTTTGAGGATAAGGATTTGTATCAAAAAACTTTCTCTGATGAAGAGAAGAGAACCAAGTTTGTCCGTTGGTGGATTCAGTCTTTGGAGAAAAGTGTTAGGAAACTCGACTTTGCTCCATCTGGTATCTCTACTCTTGTTCAAATTAATGATCTTAAAAATTCTCCTGGACTTCTTGTTGGTAAGAAAGAGCTTAGACAATTGACTAAGCAGACTCTTCAGTTGCTTCAAGATAACTATCCTGAATTCGTAGCCAAACAGATTTTCATCAATGTTCCTTGGTGGTACCTTGCCTTTTCTAGGATGATCAGTCCTTTCCTGACACAAAGGACTAAGAGCAAATTTGTATTTGCTGGTTCCTCCAAATCTGCTGAAACCCTTTTCAAATATATAGCTCCTGAGCAAGTGCCGGTTAAATATGGAGGACTGAGCAGAGAGGGTGAACAGCAATTCACCACTGCTGACCCTGCTACTGAGGTTACTATCAAACCAACAACAAAACATGCTGTTGAGTTCCCAGTTTCTGAGAAAAGCACTTTGGTTTGGGAAGTAAGAGTTGTGGATTGGAATGTGAGCTATGGAGCAGAATTTGTGCCTAGTGCTGAAGATGGATACACTGTGATAATCCAGAAGAACAGGAAAATTGCTGCAGCTGATGAAACAGTAATTAGCAACACCTTCAAAGTCGGCGAACCTGGAAAGGTTATACTCACCATTGATAACCAAACATCCAAGAAAAAGAAGCTGCTTTACAGGTCCAAGACCATACCCATTTCTGAGTAA
Protein sequence

>Msa0539880

MAAEPQKPAEEVATTSSETVVEKEQQADGVVAAAAAVTAATTDKEAVADPVADEAEKPAEVVADVEKEKVADEAVVVDESKVSQSVSFKEETNVVSELPEVQKKALDELKQLIQEALNKHEFSAPPPAPVKAPEPEVAAKEEKKPEEDDKKTEEKKEEVAEEKKDEAVVEEKKVEEEKGSTSEEPKAAEKKVEETVVEPEKEEKKVEETVVEPEKEKKVEETVVEVVEKIAASTEEDGAKTVEAIQESIVSVPVTEGEQPVAEPVAEVEVTPTVPEEVEIWGIPLLADERSDVILLKFLRARDFKVKEAFTMIKQTVIWRKEFGVEALLQEDLGTDWDKVVFTDGTDKEGHPVYYNVFGEFEDKDLYQKTFSDEEKRTKFVRWWIQSLEKSVRKLDFAPSGISTLVQINDLKNSPGLLVGKKELRQLTKQTLQLLQDNYPEFVAKQIFINVPWWYLAFSRMISPFLTQRTKSKFVFAGSSKSAETLFKYIAPEQVPVKYGGLSREGEQQFTTADPATEVTIKPTTKHAVEFPVSEKSTLVWEVRVVDWNVSYGAEFVPSAEDGYTVIIQKNRKIAAADETVISNTFKVGEPGKVILTIDNQTSKKKKLLYRSKTIPISE*