Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635810 | XP_013455361.1 | 90.024 | 411 | 20 | 7 | 1 | 408 | 1 | 393 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635810 | sp|Q9LVA0|BAG7_ARATH | 43.133 | 466 | 184 | 14 | 1 | 406 | 1 | 445 | 5.64e-87 | 274 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635810 | A0A072UIC5 | 90.024 | 411 | 20 | 7 | 1 | 408 | 1 | 393 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0540670 | Msa0635810 | 0.850109 | 2.099510e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635810 | MtrunA17_Chr4g0018451 | 90.024 | 411 | 20 | 7 | 1 | 408 | 1 | 393 | 0.0 | 662 |
| Msa0635810 | MtrunA17_Chr8g0347891 | 30.508 | 118 | 80 | 1 | 250 | 365 | 467 | 584 | 9.27e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635810 | AT5G62390.1 | 43.133 | 466 | 184 | 14 | 1 | 406 | 1 | 445 | 5.73e-88 | 274 |
Find 123 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGGTGTGGTGGGGTTTA+AGG | 0.141201 | 4_3:+25187991 | None:intergenic |
| TTGCAATAGCCAGCTCTCTA+AGG | 0.271737 | 4_3:+25185381 | None:intergenic |
| AAATGGACGGCTGAGATTAA+AGG | 0.275024 | 4_3:-25187377 | Msa0635810:CDS |
| CACCTTGTTCGATTTCCTTC+CGG | 0.302889 | 4_3:+25184489 | None:intergenic |
| GGCTTTCATATTTCATCTAA+TGG | 0.317196 | 4_3:-25184292 | Msa0635810:three_prime_UTR |
| CAGTGATCTTCCAGCAGGTT+GGG | 0.323133 | 4_3:+25184553 | None:intergenic |
| TATTGCAAAATCCAAGTTAA+AGG | 0.339832 | 4_3:-25185366 | Msa0635810:CDS |
| AGTGTTGTTGTGATTTGATT+TGG | 0.361968 | 4_3:+25187924 | None:intergenic |
| CAATGTTTACTACTAAATAA+TGG | 0.363754 | 4_3:+25184171 | None:intergenic |
| GAAGTATCCCAGTGAGATTA+AGG | 0.367966 | 4_3:-25184422 | Msa0635810:three_prime_UTR |
| GTATAAATGGATAGCTGAAT+TGG | 0.374457 | 4_3:-25187453 | Msa0635810:CDS |
| GGTTTGATAGAAAGTATAAA+TGG | 0.378976 | 4_3:-25187466 | Msa0635810:CDS |
| GGGAAGATAGTGGGAATGAT+AGG | 0.379580 | 4_3:-25187349 | Msa0635810:CDS |
| AAGGCATTTGCAAAGAGGTT+TGG | 0.379969 | 4_3:-25185518 | Msa0635810:CDS |
| TGTTGTGATTTGATTTGGTT+TGG | 0.385732 | 4_3:+25187929 | None:intergenic |
| TCGAGGAAGGAAGGGAATAA+TGG | 0.405045 | 4_3:+25187773 | None:intergenic |
| AGCTCTGATTTCCTTTAACT+TGG | 0.408724 | 4_3:+25185355 | None:intergenic |
| ATTAAAGATGGAGAGAAGAA+TGG | 0.417845 | 4_3:-25187488 | Msa0635810:CDS |
| TGATTTCGTATCTTCTGAAT+CGG | 0.420862 | 4_3:+25187861 | None:intergenic |
| TATTGCTTCCTTAATCTCAC+TGG | 0.430273 | 4_3:+25184414 | None:intergenic |
| GTCGTAGATCCCCAACCTGC+TGG | 0.432813 | 4_3:-25184563 | Msa0635810:CDS |
| CAGATCGTCATCGGAGGAAA+GGG | 0.433313 | 4_3:-25187584 | Msa0635810:CDS |
| TCTGAATCGGGACATGGTTA+AGG | 0.434306 | 4_3:+25187874 | None:intergenic |
| AAGAATGACGGCGGCGGCGG+TGG | 0.443306 | 4_3:-25187536 | Msa0635810:CDS |
| TATACATTTGCTGTTGAAAG+TGG | 0.443436 | 4_3:-25187323 | Msa0635810:CDS |
| TTGAAAGGGAATGGTGTGGT+GGG | 0.448106 | 4_3:+25187983 | None:intergenic |
| TTAAAGATGGAGAGAAGAAT+GGG | 0.455656 | 4_3:-25187487 | Msa0635810:CDS |
| GAAATCAATGGTGGATGAGC+TGG | 0.456593 | 4_3:-25184600 | Msa0635810:CDS |
| TGAAATGAAATTGATAATGA+TGG | 0.471299 | 4_3:+25187955 | None:intergenic |
| TCCTTCCGGATGACTCCATC+AGG | 0.481251 | 4_3:+25184503 | None:intergenic |
| AGAGGAAGAAGAAGAGAACA+AGG | 0.483805 | 4_3:+25187823 | None:intergenic |
| AGAAAGAAAATTGCGTATTG+TGG | 0.486134 | 4_3:-25187207 | Msa0635810:CDS |
| AAGAAGAATGACGGCGGCGG+CGG | 0.488572 | 4_3:-25187539 | Msa0635810:CDS |
| CTGTATTGAAGAATTTGAAA+TGG | 0.490017 | 4_3:-25187394 | Msa0635810:CDS |
| TGGTGGGGTTTAAGGTGTGA+TGG | 0.490768 | 4_3:+25187999 | None:intergenic |
| GAAGATCACTGTCCTTCAAA+AGG | 0.497000 | 4_3:-25184541 | Msa0635810:CDS |
| ACAACTTTATGATCATCATC+AGG | 0.501579 | 4_3:+25187173 | None:intergenic |
| ACTAGCTATGCGACGTCGGA+AGG | 0.503431 | 4_3:+25185316 | None:intergenic |
| ACAGTGATCTTCCAGCAGGT+TGG | 0.507749 | 4_3:+25184552 | None:intergenic |
| GATTTCGTATCTTCTGAATC+GGG | 0.509757 | 4_3:+25187862 | None:intergenic |
| GTTGAAAGGGAATGGTGTGG+TGG | 0.513929 | 4_3:+25187982 | None:intergenic |
| ACTCAGCGACTCGGTCACTC+AGG | 0.521666 | 4_3:+25187624 | None:intergenic |
| CACGAAGAGCCTTTGACCTA+CGG | 0.522271 | 4_3:+25185405 | None:intergenic |
| GGAGATTGTTCGAGGAAGGA+AGG | 0.523689 | 4_3:+25187764 | None:intergenic |
| GCAGATCGTCATCGGAGGAA+AGG | 0.527239 | 4_3:-25187585 | Msa0635810:CDS |
| AAGGACAGTGATCTTCCAGC+AGG | 0.527636 | 4_3:+25184548 | None:intergenic |
| ACGGATCAAATACGCTCTAA+AGG | 0.532420 | 4_3:+25185424 | None:intergenic |
| TGCAATAGCCAGCTCTCTAA+GGG | 0.534983 | 4_3:+25185382 | None:intergenic |
| AGTGATCTTCCAGCAGGTTG+GGG | 0.536862 | 4_3:+25184554 | None:intergenic |
| ACGGCTGAGATTAAAGGAAA+GGG | 0.537277 | 4_3:-25187371 | Msa0635810:CDS |
| ATCAAATACGCAGCATCTTG+AGG | 0.539023 | 4_3:+25185455 | None:intergenic |
| GGTTTAAGGTGTGATGGAGA+TGG | 0.539515 | 4_3:+25188005 | None:intergenic |
| GCGCAGTAGATCTGCATGGA+AGG | 0.539620 | 4_3:+25187694 | None:intergenic |
| TGGACGGCTGAGATTAAAGA+TGG | 0.545423 | 4_3:-25187500 | Msa0635810:CDS |
| TTAGAGCGTATTTGATCCGT+AGG | 0.545775 | 4_3:-25185421 | Msa0635810:CDS |
| AGATCGAGATCGAACGGTAA+CGG | 0.546311 | 4_3:+25187740 | None:intergenic |
| AGTAATGAAGAAATGTGAAG+AGG | 0.546341 | 4_3:+25187805 | None:intergenic |
| AAGTGATGATGAAAAGAAGA+AGG | 0.547043 | 4_3:-25187300 | Msa0635810:CDS |
| TAGATCTGCAAAGAAATCAA+TGG | 0.548595 | 4_3:-25184612 | Msa0635810:CDS |
| TGATGAAGCCGAGAGTACTT+AGG | 0.549452 | 4_3:-25184444 | Msa0635810:exon |
| CGATTCGAGCAGATCGTCAT+CGG | 0.549464 | 4_3:-25187593 | Msa0635810:CDS |
| CAACAAACTAAAACAGCGGA+TGG | 0.549712 | 4_3:+25184358 | None:intergenic |
| TGAAAGGGAATGGTGTGGTG+GGG | 0.551329 | 4_3:+25187984 | None:intergenic |
| CCTCACTGTTGATGCCATTG+AGG | 0.551515 | 4_3:-25185246 | Msa0635810:intron |
| GTATCTTCTGAATCGGGACA+TGG | 0.553972 | 4_3:+25187868 | None:intergenic |
| ATGACGGCGGCGGCGGTGGT+CGG | 0.554558 | 4_3:-25187532 | Msa0635810:CDS |
| TCTTCGTGCCCTTAGAGAGC+TGG | 0.556613 | 4_3:-25185390 | Msa0635810:CDS |
| AGATCTGCATGGAAGGGAGA+TGG | 0.558123 | 4_3:+25187701 | None:intergenic |
| ATAATGATGGTGATGTTGAA+AGG | 0.562541 | 4_3:+25187968 | None:intergenic |
| GAGATTGTTCGAGGAAGGAA+GGG | 0.562842 | 4_3:+25187765 | None:intergenic |
| TAATGATGGTGATGTTGAAA+GGG | 0.563091 | 4_3:+25187969 | None:intergenic |
| GAAGAAGAGAACAAGGGTAA+TGG | 0.567431 | 4_3:+25187830 | None:intergenic |
| ATATGCCTGATGGAGTCATC+CGG | 0.568869 | 4_3:-25184508 | Msa0635810:CDS |
| ATTGCTTCCTTAATCTCACT+GGG | 0.569391 | 4_3:+25184415 | None:intergenic |
| GCTTTGAAGCAACAACAACT+CGG | 0.571232 | 4_3:-25187656 | Msa0635810:CDS |
| GAAAGAGAAAGAGAGTGTGA+AGG | 0.571631 | 4_3:-25187240 | Msa0635810:CDS |
| GGATACTTCCTAAGTACTCT+CGG | 0.572032 | 4_3:+25184436 | None:intergenic |
| CGGTGGAGATTGTTCGAGGA+AGG | 0.573092 | 4_3:+25187760 | None:intergenic |
| CGCAGTAGATCTGCATGGAA+GGG | 0.575195 | 4_3:+25187695 | None:intergenic |
| GACGGCTGAGATTAAAGGAA+AGG | 0.576560 | 4_3:-25187372 | Msa0635810:CDS |
| TCAAATCTTAGACTAAGATC+CGG | 0.581767 | 4_3:+25184331 | None:intergenic |
| AATGGGAGGTACTACCTCAA+TGG | 0.582597 | 4_3:+25185232 | None:intergenic |
| TGATGAAGGCATTTGCAAAG+AGG | 0.583010 | 4_3:-25185523 | Msa0635810:intron |
| ATTGAAGAATTTGAAATGGA+CGG | 0.583443 | 4_3:-25187390 | Msa0635810:CDS |
| CTTAACTTAGATTAAAACCA+TGG | 0.586963 | 4_3:+25184213 | None:intergenic |
| CGACGTCGCATAGCTAGTGA+TGG | 0.590161 | 4_3:-25185311 | Msa0635810:CDS |
| CATCACTAGCTATGCGACGT+CGG | 0.592506 | 4_3:+25185312 | None:intergenic |
| AGGACCTTTGATATGCCTGA+TGG | 0.594745 | 4_3:-25184518 | Msa0635810:CDS |
| GTATTTGATCCGTAGGTCAA+AGG | 0.598182 | 4_3:-25185414 | Msa0635810:CDS |
| ACAAAGTGTTGAACGGAACG+AGG | 0.605941 | 4_3:+25188036 | None:intergenic |
| ATCCGGAAGGAAATCGAACA+AGG | 0.606185 | 4_3:-25184491 | Msa0635810:CDS |
| GACTCCATCAGGCATATCAA+AGG | 0.607706 | 4_3:+25184514 | None:intergenic |
| CTTTGAAGCAACAACAACTC+GGG | 0.611081 | 4_3:-25187655 | Msa0635810:CDS |
| GGAAGGAAGGGAATAATGGA+AGG | 0.611992 | 4_3:+25187777 | None:intergenic |
| ATGGTGATGTTGAAAGGGAA+TGG | 0.612547 | 4_3:+25187974 | None:intergenic |
| GTAACGGTGGAGATTGTTCG+AGG | 0.613194 | 4_3:+25187756 | None:intergenic |
| GAGGAAGAAGAAGAGAACAA+GGG | 0.617295 | 4_3:+25187824 | None:intergenic |
| TCGCATAGCTAGTGATGGAG+TGG | 0.617584 | 4_3:-25185306 | Msa0635810:CDS |
| TGTGTAGGGAGTTGATCTGA+TGG | 0.617974 | 4_3:-25184636 | Msa0635810:intron |
| ATCTGCAAAGAAATCAATGG+TGG | 0.618866 | 4_3:-25184609 | Msa0635810:CDS |
| GAAGACGACAAAGTGTTGAA+CGG | 0.620800 | 4_3:+25188029 | None:intergenic |
| AGATCGAGATCGAGATCGAA+CGG | 0.633023 | 4_3:+25187734 | None:intergenic |
| CTAAAACAGCGGATGGAATG+CGG | 0.634340 | 4_3:+25184365 | None:intergenic |
| CTCAGCGACTCGGTCACTCA+GGG | 0.634703 | 4_3:+25187625 | None:intergenic |
| TGGTCGGAAGTACACGTGGA+CGG | 0.635567 | 4_3:-25187516 | Msa0635810:CDS |
| TTCGAGCAGATCGTCATCGG+AGG | 0.638433 | 4_3:-25187590 | Msa0635810:CDS |
| GCCTGATGGAGTCATCCGGA+AGG | 0.646491 | 4_3:-25184504 | Msa0635810:CDS |
| AGATCGTCATCGGAGGAAAG+GGG | 0.652003 | 4_3:-25187583 | Msa0635810:CDS |
| CTAGCAACAAACTAAAACAG+CGG | 0.652177 | 4_3:+25184354 | None:intergenic |
| GATCACTGTCCTTCAAAAGG+AGG | 0.656472 | 4_3:-25184538 | Msa0635810:CDS |
| GCGGTGGTCGGAAGTACACG+TGG | 0.657033 | 4_3:-25187520 | Msa0635810:CDS |
| TCACGCGCAGTAGATCTGCA+TGG | 0.658500 | 4_3:+25187690 | None:intergenic |
| CGGCTGAGATTAAAGGAAAG+GGG | 0.661383 | 4_3:-25187370 | Msa0635810:CDS |
| AAACAGCGGATGGAATGCGG+TGG | 0.662985 | 4_3:+25184368 | None:intergenic |
| TCGAGATCGAACGGTAACGG+TGG | 0.668277 | 4_3:+25187743 | None:intergenic |
| GTGATGGAGTGGAACACCAG+AGG | 0.676023 | 4_3:-25185295 | Msa0635810:CDS |
| GTGACTCTAACTCAGCGACT+CGG | 0.678594 | 4_3:+25187615 | None:intergenic |
| GGCTGAGATTAAAGGAAAGG+GGG | 0.679055 | 4_3:-25187369 | Msa0635810:CDS |
| GAAGGAAGGGAATAATGGAA+GGG | 0.689303 | 4_3:+25187778 | None:intergenic |
| GATGTTGAAAGGGAATGGTG+TGG | 0.691504 | 4_3:+25187979 | None:intergenic |
| AAGTGTTGAACGGAACGAGG+AGG | 0.719073 | 4_3:+25188039 | None:intergenic |
| CCTCAATGGCATCAACAGTG+AGG | 0.722927 | 4_3:+25185246 | None:intergenic |
| GGAGCAGTTCAAAATCAGAG+AGG | 0.727584 | 4_3:-25185497 | Msa0635810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCAATTCTTTAAAAAAAG+AGG | - | chr4_3:25185533-25185552 | Msa0635810:intron | 15.0% |
| !! | TCAATTATACATAAAGAAAT+TGG | - | chr4_3:25185614-25185633 | Msa0635810:intron | 15.0% |
| !! | AAAATATGATGAATTGAATT+TGG | - | chr4_3:25185942-25185961 | Msa0635810:intron | 15.0% |
| !! | ACAATATTCTAATATTTCAT+CGG | + | chr4_3:25187456-25187475 | None:intergenic | 15.0% |
| !! | ATTAGAATATTGTTCAATAT+TGG | - | chr4_3:25187463-25187482 | Msa0635810:CDS | 15.0% |
| !! | TTAGAATATTGTTCAATATT+GGG | - | chr4_3:25187464-25187483 | Msa0635810:CDS | 15.0% |
| !!! | TGAAATGAAATTGATAATGA+TGG | + | chr4_3:25184232-25184251 | None:intergenic | 20.0% |
| !!! | AGAATTGATTCTGATATATT+TGG | - | chr4_3:25185244-25185263 | Msa0635810:intron | 20.0% |
| !!! | GAATTGATTCTGATATATTT+GGG | - | chr4_3:25185245-25185264 | Msa0635810:intron | 20.0% |
| !!! | TAACAAGAATTGATTTAAAG+TGG | + | chr4_3:25185383-25185402 | None:intergenic | 20.0% |
| !!! | AACTTGTAAATTTTAACTTC+AGG | - | chr4_3:25185507-25185526 | Msa0635810:CDS | 20.0% |
| !!! | ATAATTGATTTTGACATGTT+TGG | + | chr4_3:25185602-25185621 | None:intergenic | 20.0% |
| !!! | AATAGGGATAAAATGTTTTT+TGG | - | chr4_3:25186006-25186025 | Msa0635810:intron | 20.0% |
| !! | TGTAAAACAATTCAAAAGTT+TGG | + | chr4_3:25186981-25187000 | None:intergenic | 20.0% |
| !!! | AATTCCTATATTTCCTTTTT+TGG | + | chr4_3:25187424-25187443 | None:intergenic | 20.0% |
| !!! | TTTGAGTACTTTTATATGTT+AGG | - | chr4_3:25187871-25187890 | Msa0635810:exon | 20.0% |
| !! | ACTTTGATGAATGAAAAAAA+TGG | - | chr4_3:25187940-25187959 | Msa0635810:five_prime_UTR | 20.0% |
| !! | CTTTGATGAATGAAAAAAAT+GGG | - | chr4_3:25187941-25187960 | Msa0635810:five_prime_UTR | 20.0% |
| !! | CAATGTTTACTACTAAATAA+TGG | + | chr4_3:25188016-25188035 | None:intergenic | 20.0% |
| ! | AAGAAGAAAAAGAAGAATGA+CGG | - | chr4_3:25184636-25184655 | Msa0635810:intron | 25.0% |
| !! | GGTTTGATAGAAAGTATAAA+TGG | - | chr4_3:25184718-25184737 | Msa0635810:intron | 25.0% |
| ! | CTGTATTGAAGAATTTGAAA+TGG | - | chr4_3:25184790-25184809 | Msa0635810:intron | 25.0% |
| !! | ATTGAAGAATTTGAAATGGA+CGG | - | chr4_3:25184794-25184813 | Msa0635810:intron | 25.0% |
| !!! | TAAAGTTGTTGTTTTAAGAC+AGG | - | chr4_3:25185025-25185044 | Msa0635810:intron | 25.0% |
| !!! | CGATAAACTAAAGTTGATTT+TGG | - | chr4_3:25185215-25185234 | Msa0635810:intron | 25.0% |
| !!! | TAAACTAAAGTTGATTTTGG+AGG | - | chr4_3:25185218-25185237 | Msa0635810:intron | 25.0% |
| !!! | TTATAATACGACTCACTTTT+AGG | - | chr4_3:25185347-25185366 | Msa0635810:CDS | 25.0% |
| !!! | TTGTAAATTTTAACTTCAGG+TGG | - | chr4_3:25185510-25185529 | Msa0635810:CDS | 25.0% |
| ! | AAAAGAGGTAGAATCAATTA+TGG | - | chr4_3:25185548-25185567 | Msa0635810:intron | 25.0% |
| !!! | AGCTGTTTTCAAATTATTAC+CGG | - | chr4_3:25185672-25185691 | Msa0635810:intron | 25.0% |
| ! | TACTTCATATATTAGGATCA+AGG | - | chr4_3:25185762-25185781 | Msa0635810:intron | 25.0% |
| ! | TAACAAACAGAAGATTAATG+TGG | + | chr4_3:25185850-25185869 | None:intergenic | 25.0% |
| !! | TTCTGTTTGTTAATTAGATG+AGG | - | chr4_3:25185858-25185877 | Msa0635810:intron | 25.0% |
| !!! | GGATAAAATGTTTTTTGGTA+TGG | - | chr4_3:25186011-25186030 | Msa0635810:intron | 25.0% |
| ! | ACCTTATAAACCTACTAATT+CGG | + | chr4_3:25186108-25186127 | None:intergenic | 25.0% |
| !!! | TAGGTTTATAAGGTTTTGAA+AGG | - | chr4_3:25186114-25186133 | Msa0635810:intron | 25.0% |
| !!! | TATGTTATTTTCGATTCACA+TGG | + | chr4_3:25186248-25186267 | None:intergenic | 25.0% |
| ! | TGGAATCAAAGAAAAACTAT+AGG | - | chr4_3:25186442-25186461 | Msa0635810:intron | 25.0% |
| ! | TATTAAGATTTAGATGCCAA+TGG | - | chr4_3:25186471-25186490 | Msa0635810:intron | 25.0% |
| ! | AAAATTTATCTCACTATGTG+AGG | + | chr4_3:25186557-25186576 | None:intergenic | 25.0% |
| !!! | AACATTTTGTTTGATGATGA+AGG | - | chr4_3:25186647-25186666 | Msa0635810:intron | 25.0% |
| ! | TATTGCAAAATCCAAGTTAA+AGG | - | chr4_3:25186818-25186837 | Msa0635810:intron | 25.0% |
| ! | ATTCAAAAGTTTGGAGAAAT+GGG | + | chr4_3:25186972-25186991 | None:intergenic | 25.0% |
| ! | AATTCAAAAGTTTGGAGAAA+TGG | + | chr4_3:25186973-25186992 | None:intergenic | 25.0% |
| ! | AACAGAATATTACCATTCAT+CGG | - | chr4_3:25187496-25187515 | Msa0635810:CDS | 25.0% |
| !! | TTTGTCTTTTGCTTAATGTT+TGG | - | chr4_3:25187916-25187935 | Msa0635810:five_prime_UTR | 25.0% |
| ! | CTTAACTTAGATTAAAACCA+TGG | + | chr4_3:25187974-25187993 | None:intergenic | 25.0% |
| !!! | CATGGTTTTAATCTAAGTTA+AGG | - | chr4_3:25187972-25187991 | Msa0635810:five_prime_UTR | 25.0% |
| !!! | GTTTTAATCTAAGTTAAGGT+AGG | - | chr4_3:25187976-25187995 | Msa0635810:five_prime_UTR | 25.0% |
| ! | TAATGATGGTGATGTTGAAA+GGG | + | chr4_3:25184218-25184237 | None:intergenic | 30.0% |
| ! | ATAATGATGGTGATGTTGAA+AGG | + | chr4_3:25184219-25184238 | None:intergenic | 30.0% |
| !! | TGTTGTGATTTGATTTGGTT+TGG | + | chr4_3:25184258-25184277 | None:intergenic | 30.0% |
| ! | AGTGTTGTTGTGATTTGATT+TGG | + | chr4_3:25184263-25184282 | None:intergenic | 30.0% |
| !!! | ACATGGTTAAGGAGTTTTTT+TGG | + | chr4_3:25184302-25184321 | None:intergenic | 30.0% |
| TGATTTCGTATCTTCTGAAT+CGG | + | chr4_3:25184326-25184345 | None:intergenic | 30.0% | |
| AGTAATGAAGAAATGTGAAG+AGG | + | chr4_3:25184382-25184401 | None:intergenic | 30.0% | |
| ATTAAAGATGGAGAGAAGAA+TGG | - | chr4_3:25184696-25184715 | Msa0635810:intron | 30.0% | |
| TTAAAGATGGAGAGAAGAAT+GGG | - | chr4_3:25184697-25184716 | Msa0635810:intron | 30.0% | |
| GTATAAATGGATAGCTGAAT+TGG | - | chr4_3:25184731-25184750 | Msa0635810:intron | 30.0% | |
| !! | TATACATTTGCTGTTGAAAG+TGG | - | chr4_3:25184861-25184880 | Msa0635810:intron | 30.0% |
| ! | AAGTGATGATGAAAAGAAGA+AGG | - | chr4_3:25184884-25184903 | Msa0635810:intron | 30.0% |
| GAATGTGAATGAAAAAGAGA+AGG | - | chr4_3:25184914-25184933 | Msa0635810:intron | 30.0% | |
| AGAAAGAAAATTGCGTATTG+TGG | - | chr4_3:25184977-25184996 | Msa0635810:intron | 30.0% | |
| ACAACTTTATGATCATCATC+AGG | + | chr4_3:25185014-25185033 | None:intergenic | 30.0% | |
| !! | GTGTCACTTCATATTTATGA+AGG | - | chr4_3:25185099-25185118 | Msa0635810:intron | 30.0% |
| CAAAACAAAAACACATGCTT+GGG | + | chr4_3:25185171-25185190 | None:intergenic | 30.0% | |
| ACAAAACAAAAACACATGCT+TGG | + | chr4_3:25185172-25185191 | None:intergenic | 30.0% | |
| !!! | AAGCATGTGTTTTTGTTTTG+TGG | - | chr4_3:25185171-25185190 | Msa0635810:intron | 30.0% |
| ! | TCAACACACTTTTAGACATT+TGG | + | chr4_3:25185411-25185430 | None:intergenic | 30.0% |
| ! | AATGTCTAAAAGTGTGTTGA+AGG | - | chr4_3:25185411-25185430 | Msa0635810:CDS | 30.0% |
| !! | AAAGAAATTGGTGTCACAAA+TGG | - | chr4_3:25185626-25185645 | Msa0635810:intron | 30.0% |
| TAGATGAGGATTTATGATCT+TGG | - | chr4_3:25185872-25185891 | Msa0635810:intron | 30.0% | |
| ATCTTGGAAACGAAAAAGAT+AGG | - | chr4_3:25185888-25185907 | Msa0635810:intron | 30.0% | |
| TTAAATTATGAGTCGCAAGT+TGG | + | chr4_3:25186068-25186087 | None:intergenic | 30.0% | |
| TTTCATAAGTCCGAATTAGT+AGG | - | chr4_3:25186095-25186114 | Msa0635810:intron | 30.0% | |
| TCCGAATTAGTAGGTTTATA+AGG | - | chr4_3:25186104-25186123 | Msa0635810:intron | 30.0% | |
| !! | TGTGCATTACTTTTCCTTTT+GGG | - | chr4_3:25186306-25186325 | Msa0635810:intron | 30.0% |
| ! | GTCGTGTTATTGTTCTAAAT+GGG | - | chr4_3:25186349-25186368 | Msa0635810:intron | 30.0% |
| ATTCCAAATCTGAATCTGTA+AGG | + | chr4_3:25186428-25186447 | None:intergenic | 30.0% | |
| ! | TAATTTTCTCAGAAAACCTC+TGG | + | chr4_3:25186908-25186927 | None:intergenic | 30.0% |
| ! | AAACTGTAGTGCAATTTTTG+TGG | - | chr4_3:25187040-25187059 | Msa0635810:intron | 30.0% |
| ! | TTGCAACAACAAAGTCTTTT+TGG | + | chr4_3:25187328-25187347 | None:intergenic | 30.0% |
| CATTCAAATTTCAAACCGAT+TGG | + | chr4_3:25187353-25187372 | None:intergenic | 30.0% | |
| GTAGCCAAAAAAGGAAATAT+AGG | - | chr4_3:25187417-25187436 | Msa0635810:CDS | 30.0% | |
| TAGATCTGCAAAGAAATCAA+TGG | - | chr4_3:25187572-25187591 | Msa0635810:CDS | 30.0% | |
| TCAAATCTTAGACTAAGATC+CGG | + | chr4_3:25187856-25187875 | None:intergenic | 30.0% | |
| GGCTTTCATATTTCATCTAA+TGG | - | chr4_3:25187892-25187911 | Msa0635810:five_prime_UTR | 30.0% | |
| GATTTCGTATCTTCTGAATC+GGG | + | chr4_3:25184325-25184344 | None:intergenic | 35.0% | |
| AAGAAAAAGAAGAATGACGG+CGG | - | chr4_3:25184639-25184658 | Msa0635810:intron | 35.0% | |
| ! | AGCACTTTTAATGCTGAAGT+TGG | - | chr4_3:25185126-25185145 | Msa0635810:intron | 35.0% |
| ! | GCACTTTTAATGCTGAAGTT+GGG | - | chr4_3:25185127-25185146 | Msa0635810:intron | 35.0% |
| AGAGGTAGAATCAATTATGG+AGG | - | chr4_3:25185551-25185570 | Msa0635810:intron | 35.0% | |
| TGATACTACATTGACAACAC+CGG | + | chr4_3:25185694-25185713 | None:intergenic | 35.0% | |
| ATCATGTAATGTGTCTGTGT+TGG | - | chr4_3:25185710-25185729 | Msa0635810:intron | 35.0% | |
| ! | GTGTCGGTACTTCATATATT+AGG | - | chr4_3:25185755-25185774 | Msa0635810:intron | 35.0% |
| ! | AGGTTTTCAAAACTCTAGCT+AGG | - | chr4_3:25185782-25185801 | Msa0635810:intron | 35.0% |
| !! | CTGTGCATTACTTTTCCTTT+TGG | - | chr4_3:25186305-25186324 | Msa0635810:intron | 35.0% |
| ! | CAATAACACGACCAGATTTT+GGG | + | chr4_3:25186341-25186360 | None:intergenic | 35.0% |
| ! | ACAATAACACGACCAGATTT+TGG | + | chr4_3:25186342-25186361 | None:intergenic | 35.0% |
| ! | GGTCGTGTTATTGTTCTAAA+TGG | - | chr4_3:25186348-25186367 | Msa0635810:intron | 35.0% |
| GATCCTTACAGATTCAGATT+TGG | - | chr4_3:25186422-25186441 | Msa0635810:intron | 35.0% | |
| AGATTTAGATGCCAATGGTT+TGG | - | chr4_3:25186476-25186495 | Msa0635810:intron | 35.0% | |
| AAATCAGAGAGGCAAAAAGA+AGG | - | chr4_3:25186698-25186717 | Msa0635810:intron | 35.0% | |
| ! | AGCTCTGATTTCCTTTAACT+TGG | + | chr4_3:25186832-25186851 | None:intergenic | 35.0% |
| TATGATACAAGCTCTCATCA+AGG | + | chr4_3:25187069-25187088 | None:intergenic | 35.0% | |
| CTGCATTTGCTTCAAGAATT+AGG | - | chr4_3:25187204-25187223 | Msa0635810:CDS | 35.0% | |
| !! | TTTGTTGTTGCAAGACCAAT+CGG | - | chr4_3:25187335-25187354 | Msa0635810:CDS | 35.0% |
| TTTGCTGCATTATCATAGTG+TGG | - | chr4_3:25187395-25187414 | Msa0635810:CDS | 35.0% | |
| CTGTTAGATAAACCGATGAA+TGG | + | chr4_3:25187511-25187530 | None:intergenic | 35.0% | |
| !! | CATTCATCGGTTTATCTAAC+AGG | - | chr4_3:25187509-25187528 | Msa0635810:CDS | 35.0% |
| TTGTTCATTTCCTGTTGTGT+AGG | - | chr4_3:25187533-25187552 | Msa0635810:CDS | 35.0% | |
| TGTTCATTTCCTGTTGTGTA+GGG | - | chr4_3:25187534-25187553 | Msa0635810:CDS | 35.0% | |
| ATCTGCAAAGAAATCAATGG+TGG | - | chr4_3:25187575-25187594 | Msa0635810:CDS | 35.0% | |
| ATTGCTTCCTTAATCTCACT+GGG | + | chr4_3:25187772-25187791 | None:intergenic | 35.0% | |
| TATTGCTTCCTTAATCTCAC+TGG | + | chr4_3:25187773-25187792 | None:intergenic | 35.0% | |
| CTAGCAACAAACTAAAACAG+CGG | + | chr4_3:25187833-25187852 | None:intergenic | 35.0% | |
| !!! | TGTTTTAGTTTGTTGCTAGC+CGG | - | chr4_3:25187834-25187853 | Msa0635810:CDS | 35.0% |
| !! | GAAGACGACAAAGTGTTGAA+CGG | + | chr4_3:25184158-25184177 | None:intergenic | 40.0% |
| ! | ATGGTGATGTTGAAAGGGAA+TGG | + | chr4_3:25184213-25184232 | None:intergenic | 40.0% |
| GAAGAAGAGAACAAGGGTAA+TGG | + | chr4_3:25184357-25184376 | None:intergenic | 40.0% | |
| GAGGAAGAAGAAGAGAACAA+GGG | + | chr4_3:25184363-25184382 | None:intergenic | 40.0% | |
| AGAGGAAGAAGAAGAGAACA+AGG | + | chr4_3:25184364-25184383 | None:intergenic | 40.0% | |
| ! | GAAGGAAGGGAATAATGGAA+GGG | + | chr4_3:25184409-25184428 | None:intergenic | 40.0% |
| !! | GCTTTGAAGCAACAACAACT+CGG | - | chr4_3:25184528-25184547 | Msa0635810:CDS | 40.0% |
| !! | CTTTGAAGCAACAACAACTC+GGG | - | chr4_3:25184529-25184548 | Msa0635810:CDS | 40.0% |
| AAATGGACGGCTGAGATTAA+AGG | - | chr4_3:25184807-25184826 | Msa0635810:intron | 40.0% | |
| ACGGCTGAGATTAAAGGAAA+GGG | - | chr4_3:25184813-25184832 | Msa0635810:intron | 40.0% | |
| ! | GAAAGAGAAAGAGAGTGTGA+AGG | - | chr4_3:25184944-25184963 | Msa0635810:intron | 40.0% |
| TTTAATGCTGAAGTTGGGCA+CGG | - | chr4_3:25185132-25185151 | Msa0635810:intron | 40.0% | |
| !! | GAAATTGGTGTCACAAATGG+TGG | - | chr4_3:25185629-25185648 | Msa0635810:intron | 40.0% |
| ! | TGTCTGTGTTGGTGTTTCAT+AGG | - | chr4_3:25185721-25185740 | Msa0635810:intron | 40.0% |
| ATAGGTGTCCATGTTTGTGT+CGG | - | chr4_3:25185739-25185758 | Msa0635810:intron | 40.0% | |
| !! | ATGAAGTACCGACACAAACA+TGG | + | chr4_3:25185750-25185769 | None:intergenic | 40.0% |
| TCAAAACTCTAGCTAGGACA+AGG | - | chr4_3:25185788-25185807 | Msa0635810:intron | 40.0% | |
| CTATTTAGCCATACCACACA+GGG | + | chr4_3:25185991-25186010 | None:intergenic | 40.0% | |
| CTGTGTGGTATGGCTAAATA+GGG | - | chr4_3:25185990-25186009 | Msa0635810:intron | 40.0% | |
| !!! | TTTTTTGGTATGGCTTGCTG+TGG | - | chr4_3:25186021-25186040 | Msa0635810:intron | 40.0% |
| !! | CATGTTGATAGCCAAACCAT+TGG | + | chr4_3:25186490-25186509 | None:intergenic | 40.0% |
| !! | TGATGAAGGCATTTGCAAAG+AGG | - | chr4_3:25186661-25186680 | Msa0635810:intron | 40.0% |
| ! | AAGGCATTTGCAAAGAGGTT+TGG | - | chr4_3:25186666-25186685 | Msa0635810:intron | 40.0% |
| ATCAAATACGCAGCATCTTG+AGG | + | chr4_3:25186732-25186751 | None:intergenic | 40.0% | |
| ACGGATCAAATACGCTCTAA+AGG | + | chr4_3:25186763-25186782 | None:intergenic | 40.0% | |
| TTAGAGCGTATTTGATCCGT+AGG | - | chr4_3:25186763-25186782 | Msa0635810:intron | 40.0% | |
| GTATTTGATCCGTAGGTCAA+AGG | - | chr4_3:25186770-25186789 | Msa0635810:intron | 40.0% | |
| CAAAAGTTTGGAGAAATGGG+AGG | + | chr4_3:25186969-25186988 | None:intergenic | 40.0% | |
| CAAATGCAGACATATGTAGC+TGG | + | chr4_3:25187193-25187212 | None:intergenic | 40.0% | |
| ACTCAAGAAATCGAACTCTG+TGG | + | chr4_3:25187284-25187303 | None:intergenic | 40.0% | |
| GCAAAATTCTGAATGTCACG+TGG | + | chr4_3:25187380-25187399 | None:intergenic | 40.0% | |
| CATAGTGTGGTAGCCAAAAA+AGG | - | chr4_3:25187408-25187427 | Msa0635810:CDS | 40.0% | |
| GAAGATCACTGTCCTTCAAA+AGG | - | chr4_3:25187643-25187662 | Msa0635810:CDS | 40.0% | |
| ! | ATCAAAGGTCCTCCTTTTGA+AGG | + | chr4_3:25187658-25187677 | None:intergenic | 40.0% |
| GGATACTTCCTAAGTACTCT+CGG | + | chr4_3:25187751-25187770 | None:intergenic | 40.0% | |
| ! | GAAGTATCCCAGTGAGATTA+AGG | - | chr4_3:25187762-25187781 | Msa0635810:CDS | 40.0% |
| CAACAAACTAAAACAGCGGA+TGG | + | chr4_3:25187829-25187848 | None:intergenic | 40.0% | |
| !! | ACAAAGTGTTGAACGGAACG+AGG | + | chr4_3:25184151-25184170 | None:intergenic | 45.0% |
| ! | GGTTTAAGGTGTGATGGAGA+TGG | + | chr4_3:25184182-25184201 | None:intergenic | 45.0% |
| TTGAAAGGGAATGGTGTGGT+GGG | + | chr4_3:25184204-25184223 | None:intergenic | 45.0% | |
| GATGTTGAAAGGGAATGGTG+TGG | + | chr4_3:25184208-25184227 | None:intergenic | 45.0% | |
| TCTGAATCGGGACATGGTTA+AGG | + | chr4_3:25184313-25184332 | None:intergenic | 45.0% | |
| GTATCTTCTGAATCGGGACA+TGG | + | chr4_3:25184319-25184338 | None:intergenic | 45.0% | |
| ! | GGAAGGAAGGGAATAATGGA+AGG | + | chr4_3:25184410-25184429 | None:intergenic | 45.0% |
| TCGAGGAAGGAAGGGAATAA+TGG | + | chr4_3:25184414-25184433 | None:intergenic | 45.0% | |
| GAGATTGTTCGAGGAAGGAA+GGG | + | chr4_3:25184422-25184441 | None:intergenic | 45.0% | |
| AGATCGAGATCGAACGGTAA+CGG | + | chr4_3:25184447-25184466 | None:intergenic | 45.0% | |
| AGATCGAGATCGAGATCGAA+CGG | + | chr4_3:25184453-25184472 | None:intergenic | 45.0% | |
| AAAAAGAAGAATGACGGCGG+CGG | - | chr4_3:25184642-25184661 | Msa0635810:intron | 45.0% | |
| TGGACGGCTGAGATTAAAGA+TGG | - | chr4_3:25184684-25184703 | Msa0635810:intron | 45.0% | |
| GACGGCTGAGATTAAAGGAA+AGG | - | chr4_3:25184812-25184831 | Msa0635810:intron | 45.0% | |
| CGGCTGAGATTAAAGGAAAG+GGG | - | chr4_3:25184814-25184833 | Msa0635810:intron | 45.0% | |
| GGCTGAGATTAAAGGAAAGG+GGG | - | chr4_3:25184815-25184834 | Msa0635810:intron | 45.0% | |
| AAAGGAAAGGGGGAAGATAG+TGG | - | chr4_3:25184825-25184844 | Msa0635810:intron | 45.0% | |
| AAGGAAAGGGGGAAGATAGT+GGG | - | chr4_3:25184826-25184845 | Msa0635810:intron | 45.0% | |
| !! | GGGAAGATAGTGGGAATGAT+AGG | - | chr4_3:25184835-25184854 | Msa0635810:intron | 45.0% |
| ATACCACACAGGGATATAGG+AGG | + | chr4_3:25185981-25186000 | None:intergenic | 45.0% | |
| TCCTATATCCCTGTGTGGTA+TGG | - | chr4_3:25185980-25185999 | Msa0635810:intron | 45.0% | |
| CCTATTTAGCCATACCACAC+AGG | + | chr4_3:25185992-25186011 | None:intergenic | 45.0% | |
| CCTGTGTGGTATGGCTAAAT+AGG | - | chr4_3:25185989-25186008 | Msa0635810:intron | 45.0% | |
| TTGGGAGAAATGAGCCCAAA+AGG | + | chr4_3:25186323-25186342 | None:intergenic | 45.0% | |
| GGCTCATTTCTCCCAAAATC+TGG | - | chr4_3:25186327-25186346 | Msa0635810:intron | 45.0% | |
| GGAGCAGTTCAAAATCAGAG+AGG | - | chr4_3:25186687-25186706 | Msa0635810:intron | 45.0% | |
| TGCAATAGCCAGCTCTCTAA+GGG | + | chr4_3:25186805-25186824 | None:intergenic | 45.0% | |
| TTGCAATAGCCAGCTCTCTA+AGG | + | chr4_3:25186806-25186825 | None:intergenic | 45.0% | |
| !! | AATGGGAGGTACTACCTCAA+TGG | + | chr4_3:25186955-25186974 | None:intergenic | 45.0% |
| GTAGCTGGAAAGCAGTAACA+AGG | + | chr4_3:25187178-25187197 | None:intergenic | 45.0% | |
| AGATCAACTCCCTACACAAC+AGG | + | chr4_3:25187546-25187565 | None:intergenic | 45.0% | |
| ! | TGTGTAGGGAGTTGATCTGA+TGG | - | chr4_3:25187548-25187567 | Msa0635810:CDS | 45.0% |
| !! | GAAATCAATGGTGGATGAGC+TGG | - | chr4_3:25187584-25187603 | Msa0635810:CDS | 45.0% |
| GATCACTGTCCTTCAAAAGG+AGG | - | chr4_3:25187646-25187665 | Msa0635810:CDS | 45.0% | |
| AGGACCTTTGATATGCCTGA+TGG | - | chr4_3:25187666-25187685 | Msa0635810:CDS | 45.0% | |
| GACTCCATCAGGCATATCAA+AGG | + | chr4_3:25187673-25187692 | None:intergenic | 45.0% | |
| ATATGCCTGATGGAGTCATC+CGG | - | chr4_3:25187676-25187695 | Msa0635810:CDS | 45.0% | |
| ATCCGGAAGGAAATCGAACA+AGG | - | chr4_3:25187693-25187712 | Msa0635810:CDS | 45.0% | |
| CACCTTGTTCGATTTCCTTC+CGG | + | chr4_3:25187698-25187717 | None:intergenic | 45.0% | |
| !! | TGATGAAGCCGAGAGTACTT+AGG | - | chr4_3:25187740-25187759 | Msa0635810:CDS | 45.0% |
| CTAAAACAGCGGATGGAATG+CGG | + | chr4_3:25187822-25187841 | None:intergenic | 45.0% | |
| ! | AAAAAATGGGCTTCGTGCCA+TGG | - | chr4_3:25187954-25187973 | Msa0635810:five_prime_UTR | 45.0% |
| !! | AAGTGTTGAACGGAACGAGG+AGG | + | chr4_3:25184148-25184167 | None:intergenic | 50.0% |
| ! | TGGTGGGGTTTAAGGTGTGA+TGG | + | chr4_3:25184188-25184207 | None:intergenic | 50.0% |
| ! | GAATGGTGTGGTGGGGTTTA+AGG | + | chr4_3:25184196-25184215 | None:intergenic | 50.0% |
| TGAAAGGGAATGGTGTGGTG+GGG | + | chr4_3:25184203-25184222 | None:intergenic | 50.0% | |
| GTTGAAAGGGAATGGTGTGG+TGG | + | chr4_3:25184205-25184224 | None:intergenic | 50.0% | |
| GGAGATTGTTCGAGGAAGGA+AGG | + | chr4_3:25184423-25184442 | None:intergenic | 50.0% | |
| GTAACGGTGGAGATTGTTCG+AGG | + | chr4_3:25184431-25184450 | None:intergenic | 50.0% | |
| AGATCTGCATGGAAGGGAGA+TGG | + | chr4_3:25184486-25184505 | None:intergenic | 50.0% | |
| CGCAGTAGATCTGCATGGAA+GGG | + | chr4_3:25184492-25184511 | None:intergenic | 50.0% | |
| GTGACTCTAACTCAGCGACT+CGG | + | chr4_3:25184572-25184591 | None:intergenic | 50.0% | |
| CGATTCGAGCAGATCGTCAT+CGG | - | chr4_3:25184591-25184610 | Msa0635810:CDS | 50.0% | |
| CAGATCGTCATCGGAGGAAA+GGG | - | chr4_3:25184600-25184619 | Msa0635810:CDS | 50.0% | |
| AGATCGTCATCGGAGGAAAG+GGG | - | chr4_3:25184601-25184620 | Msa0635810:CDS | 50.0% | |
| TTGCCTCCTATATCCCTGTG+TGG | - | chr4_3:25185975-25185994 | Msa0635810:intron | 50.0% | |
| GCCATACCACACAGGGATAT+AGG | + | chr4_3:25185984-25186003 | None:intergenic | 50.0% | |
| CACGAAGAGCCTTTGACCTA+CGG | + | chr4_3:25186782-25186801 | None:intergenic | 50.0% | |
| CATCACTAGCTATGCGACGT+CGG | + | chr4_3:25186875-25186894 | None:intergenic | 50.0% | |
| ! | TCGCATAGCTAGTGATGGAG+TGG | - | chr4_3:25186878-25186897 | Msa0635810:intron | 50.0% |
| CCTCAATGGCATCAACAGTG+AGG | + | chr4_3:25186941-25186960 | None:intergenic | 50.0% | |
| CCTCACTGTTGATGCCATTG+AGG | - | chr4_3:25186938-25186957 | Msa0635810:intron | 50.0% | |
| AGTGATCTTCCAGCAGGTTG+GGG | + | chr4_3:25187633-25187652 | None:intergenic | 50.0% | |
| CAGTGATCTTCCAGCAGGTT+GGG | + | chr4_3:25187634-25187653 | None:intergenic | 50.0% | |
| ACAGTGATCTTCCAGCAGGT+TGG | + | chr4_3:25187635-25187654 | None:intergenic | 50.0% | |
| AAGGACAGTGATCTTCCAGC+AGG | + | chr4_3:25187639-25187658 | None:intergenic | 50.0% | |
| CGGTGGAGATTGTTCGAGGA+AGG | + | chr4_3:25184427-25184446 | None:intergenic | 55.0% | |
| ! | TCGAGATCGAACGGTAACGG+TGG | + | chr4_3:25184444-25184463 | None:intergenic | 55.0% |
| GCGCAGTAGATCTGCATGGA+AGG | + | chr4_3:25184493-25184512 | None:intergenic | 55.0% | |
| TCACGCGCAGTAGATCTGCA+TGG | + | chr4_3:25184497-25184516 | None:intergenic | 55.0% | |
| TTCGAGCAGATCGTCATCGG+AGG | - | chr4_3:25184594-25184613 | Msa0635810:CDS | 55.0% | |
| GCAGATCGTCATCGGAGGAA+AGG | - | chr4_3:25184599-25184618 | Msa0635810:CDS | 55.0% | |
| ! | TGGTCGGAAGTACACGTGGA+CGG | - | chr4_3:25184668-25184687 | Msa0635810:intron | 55.0% |
| TCTTCGTGCCCTTAGAGAGC+TGG | - | chr4_3:25186794-25186813 | Msa0635810:intron | 55.0% | |
| ACTAGCTATGCGACGTCGGA+AGG | + | chr4_3:25186871-25186890 | None:intergenic | 55.0% | |
| CGACGTCGCATAGCTAGTGA+TGG | - | chr4_3:25186873-25186892 | Msa0635810:intron | 55.0% | |
| ! | GTGATGGAGTGGAACACCAG+AGG | - | chr4_3:25186889-25186908 | Msa0635810:intron | 55.0% |
| TCCTTCCGGATGACTCCATC+AGG | + | chr4_3:25187684-25187703 | None:intergenic | 55.0% | |
| AAACAGCGGATGGAATGCGG+TGG | + | chr4_3:25187819-25187838 | None:intergenic | 55.0% | |
| !! | CTCAGCGACTCGGTCACTCA+GGG | + | chr4_3:25184562-25184581 | None:intergenic | 60.0% |
| !! | ACTCAGCGACTCGGTCACTC+AGG | + | chr4_3:25184563-25184582 | None:intergenic | 60.0% |
| AAGAAGAATGACGGCGGCGG+CGG | - | chr4_3:25184645-25184664 | Msa0635810:intron | 60.0% | |
| GTCGTAGATCCCCAACCTGC+TGG | - | chr4_3:25187621-25187640 | Msa0635810:CDS | 60.0% | |
| GCCTGATGGAGTCATCCGGA+AGG | - | chr4_3:25187680-25187699 | Msa0635810:CDS | 60.0% | |
| ! | GCGGTGGTCGGAAGTACACG+TGG | - | chr4_3:25184664-25184683 | Msa0635810:intron | 65.0% |
| AAGAATGACGGCGGCGGCGG+TGG | - | chr4_3:25184648-25184667 | Msa0635810:intron | 70.0% | |
| ATGACGGCGGCGGCGGTGGT+CGG | - | chr4_3:25184652-25184671 | Msa0635810:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 25184133 | 25188073 | 25184133 | ID=Msa0635810;Name=Msa0635810 |
| chr4_3 | mRNA | 25184133 | 25188073 | 25184133 | ID=Msa0635810-mRNA-1;Parent=Msa0635810;Name=Msa0635810-mRNA-1;_AED=0.01;_eAED=0.01;_QI=185|1|1|1|1|1|3|312|408 |
| chr4_3 | exon | 25184133 | 25184651 | 25184133 | ID=Msa0635810-mRNA-1:exon:6358;Parent=Msa0635810-mRNA-1 |
| chr4_3 | exon | 25185247 | 25185537 | 25185247 | ID=Msa0635810-mRNA-1:exon:6357;Parent=Msa0635810-mRNA-1 |
| chr4_3 | exon | 25187160 | 25188073 | 25187160 | ID=Msa0635810-mRNA-1:exon:6356;Parent=Msa0635810-mRNA-1 |
| chr4_3 | five_prime_UTR | 25187889 | 25188073 | 25187889 | ID=Msa0635810-mRNA-1:five_prime_utr;Parent=Msa0635810-mRNA-1 |
| chr4_3 | CDS | 25187160 | 25187888 | 25187160 | ID=Msa0635810-mRNA-1:cds;Parent=Msa0635810-mRNA-1 |
| chr4_3 | CDS | 25185247 | 25185537 | 25185247 | ID=Msa0635810-mRNA-1:cds;Parent=Msa0635810-mRNA-1 |
| chr4_3 | CDS | 25184445 | 25184651 | 25184445 | ID=Msa0635810-mRNA-1:cds;Parent=Msa0635810-mRNA-1 |
| chr4_3 | three_prime_UTR | 25184133 | 25184444 | 25184133 | ID=Msa0635810-mRNA-1:three_prime_utr;Parent=Msa0635810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
