AlfalfaGEDB | Msa0540670

M. sativa cultivar zhongmu-4 / Msa0540670

KEGG: -
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0005911 GO:0006457 GO:0006950 GO:0006986 GO:0008150 GO:0009266 GO:0009408 GO:0009409 GO:0009506 GO:0009605 GO:0009607 GO:0009628 GO:0009987 GO:0010033 GO:0012505 GO:0016020 GO:0030054 GO:0033554 GO:0034605 GO:0034620 GO:0035966 GO:0035967 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0055044 GO:0070417 GO:0070887 GO:0071310 GO:0071944
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0540670	XP_013455361.1	90.709	409	20	5	1	407	1	393	0.0	669

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0540670	sp\|Q9LVA0\|BAG7_ARATH	41.631	466	190	13	1	405	1	445	3.22e-86	272

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0540670	A0A072UIC5	90.709	409	20	5	1	407	1	393	0.0	669

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0368640	Msa0540670	0.808078	3.696187e-50	-8.615850e-47
Msa0480280	Msa0540670	0.817478	3.229478e-52	-8.615850e-47
Msa0521510	Msa0540670	0.806050	9.927661e-50	-8.615850e-47
Msa0540670	Msa0579080	0.846834	1.693470e-59	-8.615850e-47
Msa0540670	Msa0579160	0.811181	7.960485e-51	-8.615850e-47
Msa0540670	Msa0579220	0.809330	1.996306e-50	-8.615850e-47
Msa0540670	Msa0596630	0.827589	1.439100e-54	-8.615850e-47
Msa0540670	Msa0635810	0.850109	2.099510e-60	-8.615850e-47
Msa0540670	Msa0882370	0.809789	1.590351e-50	-8.615850e-47
Msa0540670	Msa1128810	0.811772	5.923797e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0540670	MtrunA17_Chr4g0018451	90.709	409	20	5	1	407	1	393	0.0	669
Msa0540670	MtrunA17_Chr8g0347891	30.508	118	80	1	249	364	467	584	9.45e-11	63.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0540670	AT5G62390.1	41.631	466	190	13	1	405	1	445	3.28e-87	272

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Find 127 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAGCGGATGGAATGCGG+TGG	0.662985	4_1:-23349528	None:intergenic
AAATGGACGGCTGAGATTAA+AGG	0.362663	4_1:+23346489	Msa0540670:CDS
AAGAAGAAGAAGAATGACGG+CGG	0.714249	4_1:+23346321	Msa0540670:CDS
AAGAAGAAGAATGACGGCGG+CGG	0.564842	4_1:+23346324	Msa0540670:CDS
AAGAAGAATGACGGCGGCGG+CGG	0.472075	4_1:+23346327	Msa0540670:CDS
AAGAATGACGGCGGCGGCGG+TGG	0.443306	4_1:+23346330	Msa0540670:CDS
AAGGACAGTGATCTTCCGGC+AGG	0.560848	4_1:-23349348	None:intergenic
AAGGCATTTGCAAAGAGGTT+TGG	0.379969	4_1:+23348383	Msa0540670:intron
AATGGGAGGTACTACCTCAA+TGG	0.582597	4_1:-23348669	None:intergenic
ACAACTTTATGATCATCATC+AGG	0.501579	4_1:-23346690	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGATTTCGTATCTTCTGAAT+CGG	-	chr4_1:23346008-23346027	None:intergenic	30.0%
AAGAAGAAGAAGAAGAATGA+CGG	+	chr4_1:23346318-23346337	Msa0540670:CDS	30.0%
ATTAAAGATGGAGAGAAGAA+TGG	+	chr4_1:23346378-23346397	Msa0540670:CDS	30.0%
TTAAAGATGGAGAGAAGAAT+GGG	+	chr4_1:23346379-23346398	Msa0540670:CDS	30.0%
GTATAAATGGATAGCTGAAT+TGG	+	chr4_1:23346413-23346432	Msa0540670:CDS	30.0%
CTGTATTGAAGAATGTGAAA+TGG	+	chr4_1:23346472-23346491	Msa0540670:CDS	30.0%
ATTGAAGAATGTGAAATGGA+CGG	+	chr4_1:23346476-23346495	Msa0540670:CDS	30.0%
GAATGTGAATGAAAAAGAGA+AGG	+	chr4_1:23346593-23346612	Msa0540670:CDS	30.0%
ACAACTTTATGATCATCATC+AGG	-	chr4_1:23346693-23346712	None:intergenic	30.0%
TCAGAATGAGTAGGTATATA+AGG	+	chr4_1:23347763-23347782	Msa0540670:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_1	gene	23345841	23349787	23345841	ID=Msa0540670;Name=Msa0540670
chr4_1	mRNA	23345841	23349787	23345841	ID=Msa0540670-mRNA-1;Parent=Msa0540670;Name=Msa0540670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=159\|1\|1\|1\|1\|1\|3\|314\|407
chr4_1	exon	23345841	23346725	23345841	ID=Msa0540670-mRNA-1:exon:6429;Parent=Msa0540670-mRNA-1
chr4_1	exon	23348386	23348676	23348386	ID=Msa0540670-mRNA-1:exon:6430;Parent=Msa0540670-mRNA-1
chr4_1	exon	23349267	23349787	23349267	ID=Msa0540670-mRNA-1:exon:6431;Parent=Msa0540670-mRNA-1
chr4_1	five_prime_UTR	23345841	23345999	23345841	ID=Msa0540670-mRNA-1:five_prime_utr;Parent=Msa0540670-mRNA-1
chr4_1	CDS	23346000	23346725	23346000	ID=Msa0540670-mRNA-1:cds;Parent=Msa0540670-mRNA-1
chr4_1	CDS	23348386	23348676	23348386	ID=Msa0540670-mRNA-1:cds;Parent=Msa0540670-mRNA-1
chr4_1	CDS	23349267	23349473	23349267	ID=Msa0540670-mRNA-1:cds;Parent=Msa0540670-mRNA-1
chr4_1	three_prime_UTR	23349474	23349787	23349474	ID=Msa0540670-mRNA-1:three_prime_utr;Parent=Msa0540670-mRNA-1

Gene Sequence

>Msa0540670

ATGTCCCGATTCAGAAGATACGAAATCATCGAAGAAGAGCCATTACCCTTGTTCTCTTCATCTTCCTCTTCACATTTCTTCATTACCGAAACCCTTCCATTATTCCCTTCCTTCCTCGAACAATCTCCACCCTTCGATCTCGATCTCGATCTATGTCTTCTTCCATCTCCTTTCCACGTAGATCTACTGCGCGTGAATCACACGCGAGCTGTGAAGCAACAACAACTCGGTTTACAAACCCTGAGTGACCGAGTCACCGAGTTAGAGTCACGTTTCGAGCAGATCTTCGTCGGCGGAGGAAAGGGGAAGAAGAACGAGAAGAAGAAGAAGAAGAATGACGGCGGCGGCGGTGGTCGGAAGTACACGTGGACAGCTGAGATTAAAGATGGAGAGAAGAATGGGTTTGATAGAAAGTATAAATGGATAGCTGAATTGGTTGAAGAAGAGAAGAAGAAAGAGAAGAAGAAAAGTGCTGTATTGAAGAATGTGAAATGGACGGCTGAGATTAAAGGAAAGGGGGAAGATAGTGGGAATGATAGGAAGTATACATTTGCTGTTGAAAGTGGAAGTGATGATGAAAAGAAGAAGAAAAAGAATGTGAATGAAAAAGAGAAGGTGAAAGAGAAAGAGAAAGAGAGTGTGAAGGAGAAGAAGAAAGAAAGAAGATTGCGTATTGTGGAAATTGAAGAACCTGATGATGATCATAAAGTTGTTGTTTTAAGACAGGCATTTGCAAAGAGGTTTGGAGCAGTTCAAAATCAGAGAGGCAAAAAGAAGGAATTATCTCCTCAAGATGCTGCGTATTTGATTCAGACAACCTTTAGAGCGTATTTGATCCGTAGGTCAAAGGCTCTTCGTGCCCTTAGAGAGCTGGCTATTGCAAAATCCAAGTTAAAGGAAATCAGAGCTCAGTTCAATAATTTTTCCTTCCGACGCCGCATAGCTAGTGATGGAGTGGAACACCAGAGGTTTTCTGAGAAAATTATTGTCTTGCTCCTCACTGTTGATGCCATTGAGGGAGTTGATCTGATGGTTAGATCTGCAAAGAAATCAATGGTGGATGAGCTGGAAGCAATGCTTGATGTGGTAGATCCCCAACCTGCCGGAAGATCACTGTCCTTCAAAAGGAGGACCTTTGATATGCCTGATGGAGTCATCCGGAAGGAAATCGAAGAAGGTGTTGCACAAGTTGTGCAAATGCTTGATGAAGCTGAGTGTACCTAG

Protein sequence

>Msa0540670

MSRFRRYEIIEEEPLPLFSSSSSSHFFITETLPLFPSFLEQSPPFDLDLDLCLLPSPFHVDLLRVNHTRAVKQQQLGLQTLSDRVTELESRFEQIFVGGGKGKKNEKKKKKNDGGGGGRKYTWTAEIKDGEKNGFDRKYKWIAELVEEEKKKEKKKSAVLKNVKWTAEIKGKGEDSGNDRKYTFAVESGSDDEKKKKKNVNEKEKVKEKEKESVKEKKKERRLRIVEIEEPDDDHKVVVLRQAFAKRFGAVQNQRGKKKELSPQDAAYLIQTTFRAYLIRRSKALRALRELAIAKSKLKEIRAQFNNFSFRRRIASDGVEHQRFSEKIIVLLLTVDAIEGVDLMVRSAKKSMVDELEAMLDVVDPQPAGRSLSFKRRTFDMPDGVIRKEIEEGVAQVVQMLDEAECT*