Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540670 | XP_013455361.1 | 90.709 | 409 | 20 | 5 | 1 | 407 | 1 | 393 | 0.0 | 669 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540670 | sp|Q9LVA0|BAG7_ARATH | 41.631 | 466 | 190 | 13 | 1 | 405 | 1 | 445 | 3.22e-86 | 272 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540670 | A0A072UIC5 | 90.709 | 409 | 20 | 5 | 1 | 407 | 1 | 393 | 0.0 | 669 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0368640 | Msa0540670 | 0.808078 | 3.696187e-50 | -8.615850e-47 |
| Msa0480280 | Msa0540670 | 0.817478 | 3.229478e-52 | -8.615850e-47 |
| Msa0521510 | Msa0540670 | 0.806050 | 9.927661e-50 | -8.615850e-47 |
| Msa0540670 | Msa0579080 | 0.846834 | 1.693470e-59 | -8.615850e-47 |
| Msa0540670 | Msa0579160 | 0.811181 | 7.960485e-51 | -8.615850e-47 |
| Msa0540670 | Msa0579220 | 0.809330 | 1.996306e-50 | -8.615850e-47 |
| Msa0540670 | Msa0596630 | 0.827589 | 1.439100e-54 | -8.615850e-47 |
| Msa0540670 | Msa0635810 | 0.850109 | 2.099510e-60 | -8.615850e-47 |
| Msa0540670 | Msa0882370 | 0.809789 | 1.590351e-50 | -8.615850e-47 |
| Msa0540670 | Msa1128810 | 0.811772 | 5.923797e-51 | -8.615850e-47 |
| Msa0540670 | Msa1190770 | 0.800070 | 1.712716e-48 | -8.615850e-47 |
| Msa0540670 | Msa1210040 | 0.835724 | 1.420278e-56 | -8.615850e-47 |
| Msa0540670 | Msa1219930 | 0.806162 | 9.404388e-50 | -8.615850e-47 |
| Msa0540670 | Msa1259160 | 0.836212 | 1.068388e-56 | -8.615850e-47 |
| Msa0540670 | Msa1299650 | 0.838872 | 2.221886e-57 | -8.615850e-47 |
| Msa0540670 | Msa1462780 | 0.802511 | 5.419449e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540670 | MtrunA17_Chr4g0018451 | 90.709 | 409 | 20 | 5 | 1 | 407 | 1 | 393 | 0.0 | 669 |
| Msa0540670 | MtrunA17_Chr8g0347891 | 30.508 | 118 | 80 | 1 | 249 | 364 | 467 | 584 | 9.45e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0540670 | AT5G62390.1 | 41.631 | 466 | 190 | 13 | 1 | 405 | 1 | 445 | 3.28e-87 | 272 |
Find 127 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATGGTGTGGTGGGGTTTA+AGG | 0.141201 | 4_1:-23345856 | None:intergenic |
| TTGCAATAGCCAGCTCTCTA+AGG | 0.271737 | 4_1:-23348520 | None:intergenic |
| CACCTTCTTCGATTTCCTTC+CGG | 0.276264 | 4_1:-23349407 | None:intergenic |
| TGGTGTGGTGGGGTTTAAGG+TGG | 0.284883 | 4_1:-23345853 | None:intergenic |
| CAGTGATCTTCCGGCAGGTT+GGG | 0.312745 | 4_1:-23349343 | None:intergenic |
| GGCTTTCATATTTCATCTAA+TGG | 0.317196 | 4_1:+23349604 | Msa0540670:three_prime_UTR |
| TATTGCAAAATCCAAGTTAA+AGG | 0.339832 | 4_1:+23348535 | Msa0540670:CDS |
| AGTGTTGTTGTGATTTGATT+TGG | 0.361968 | 4_1:-23345918 | None:intergenic |
| AAATGGACGGCTGAGATTAA+AGG | 0.362663 | 4_1:+23346489 | Msa0540670:CDS |
| CAATGTTTACTACTAAATAA+TGG | 0.363754 | 4_1:-23349725 | None:intergenic |
| GAAGTATCCCAGTGAGATTA+AGG | 0.367966 | 4_1:+23349474 | Msa0540670:three_prime_UTR |
| GTATAAATGGATAGCTGAAT+TGG | 0.374457 | 4_1:+23346413 | Msa0540670:CDS |
| GGTTTGATAGAAAGTATAAA+TGG | 0.378976 | 4_1:+23346400 | Msa0540670:CDS |
| GGGAAGATAGTGGGAATGAT+AGG | 0.379580 | 4_1:+23346517 | Msa0540670:CDS |
| AAGGCATTTGCAAAGAGGTT+TGG | 0.379969 | 4_1:+23348383 | Msa0540670:intron |
| TTTGAAGGACAGTGATCTTC+CGG | 0.393824 | 4_1:-23349352 | None:intergenic |
| AGGGAATAATGGAAGGGTTT+CGG | 0.395041 | 4_1:-23346085 | None:intergenic |
| GTTTAAGGTGGGGAAGCACT+TGG | 0.397274 | 4_1:-23345841 | None:intergenic |
| TCGAGGAAGGAAGGGAATAA+TGG | 0.405045 | 4_1:-23346096 | None:intergenic |
| AGCTCTGATTTCCTTTAACT+TGG | 0.408724 | 4_1:-23348546 | None:intergenic |
| ATCTTCGTCGGCGGAGGAAA+GGG | 0.409438 | 4_1:+23346282 | Msa0540670:CDS |
| ATTAAAGATGGAGAGAAGAA+TGG | 0.417845 | 4_1:+23346378 | Msa0540670:CDS |
| TGATTTCGTATCTTCTGAAT+CGG | 0.420862 | 4_1:-23346005 | None:intergenic |
| GGAGATTGTTCGAGGAAGGA+AGG | 0.429643 | 4_1:-23346105 | None:intergenic |
| TATTGCTTCCTTAATCTCAC+TGG | 0.430273 | 4_1:-23349482 | None:intergenic |
| AAGAATGACGGCGGCGGCGG+TGG | 0.443306 | 4_1:+23346330 | Msa0540670:CDS |
| TATACATTTGCTGTTGAAAG+TGG | 0.443436 | 4_1:+23346543 | Msa0540670:CDS |
| TTGAAAGGGAATGGTGTGGT+GGG | 0.448106 | 4_1:-23345864 | None:intergenic |
| TTAAAGATGGAGAGAAGAAT+GGG | 0.455656 | 4_1:+23346379 | Msa0540670:CDS |
| GAAATCAATGGTGGATGAGC+TGG | 0.456593 | 4_1:+23349296 | Msa0540670:CDS |
| AGTGAGTGAAATCGGTGTTA+AGG | 0.467927 | 4_1:-23345968 | None:intergenic |
| GGTGTGGTGGGGTTTAAGGT+GGG | 0.470212 | 4_1:-23345852 | None:intergenic |
| TGAAATGAAATTGATAATGA+TGG | 0.471299 | 4_1:-23345892 | None:intergenic |
| AAGAAGAATGACGGCGGCGG+CGG | 0.472075 | 4_1:+23346327 | Msa0540670:CDS |
| TCCTTCCGGATGACTCCATC+AGG | 0.481251 | 4_1:-23349393 | None:intergenic |
| AGTGATCTTCCGGCAGGTTG+GGG | 0.481594 | 4_1:-23349342 | None:intergenic |
| AGAGGAAGATGAAGAGAACA+AGG | 0.497268 | 4_1:-23346046 | None:intergenic |
| AGAAAGAAGATTGCGTATTG+TGG | 0.500097 | 4_1:+23346656 | Msa0540670:CDS |
| ACAACTTTATGATCATCATC+AGG | 0.501579 | 4_1:-23346690 | None:intergenic |
| ACAGTGATCTTCCGGCAGGT+TGG | 0.504320 | 4_1:-23349344 | None:intergenic |
| ACTCGGTGACTCGGTCACTC+AGG | 0.505003 | 4_1:-23346239 | None:intergenic |
| GATTTCGTATCTTCTGAATC+GGG | 0.509757 | 4_1:-23346004 | None:intergenic |
| GAAGATCACTGTCCTTCAAA+AGG | 0.510812 | 4_1:+23349355 | Msa0540670:CDS |
| GAGCAGATCTTCGTCGGCGG+AGG | 0.512060 | 4_1:+23346276 | Msa0540670:CDS |
| CTGTATTGAAGAATGTGAAA+TGG | 0.512640 | 4_1:+23346472 | Msa0540670:CDS |
| GTTGAAAGGGAATGGTGTGG+TGG | 0.513929 | 4_1:-23345865 | None:intergenic |
| GTTGAGTGAGTGAGTGAAAT+CGG | 0.517926 | 4_1:-23345976 | None:intergenic |
| GATCTTCGTCGGCGGAGGAA+AGG | 0.518501 | 4_1:+23346281 | Msa0540670:CDS |
| CACGAAGAGCCTTTGACCTA+CGG | 0.522271 | 4_1:-23348496 | None:intergenic |
| ATCTCACTGGGATACTTCCT+AGG | 0.523827 | 4_1:-23349469 | None:intergenic |
| ACTAGCTATGCGGCGTCGGA+AGG | 0.530788 | 4_1:-23348585 | None:intergenic |
| ACGGATCAAATACGCTCTAA+AGG | 0.532420 | 4_1:-23348477 | None:intergenic |
| GTATCTTCTGAATCGGGACA+TGG | 0.533901 | 4_1:-23345998 | None:intergenic |
| TGGACAGCTGAGATTAAAGA+TGG | 0.534198 | 4_1:+23346366 | Msa0540670:CDS |
| TGCAATAGCCAGCTCTCTAA+GGG | 0.534983 | 4_1:-23348519 | None:intergenic |
| ACGGCTGAGATTAAAGGAAA+GGG | 0.537277 | 4_1:+23346495 | Msa0540670:CDS |
| CATCACTAGCTATGCGGCGT+CGG | 0.538516 | 4_1:-23348589 | None:intergenic |
| ATCAAATACGCAGCATCTTG+AGG | 0.539023 | 4_1:-23348446 | None:intergenic |
| TTTAAGGTGGGGAAGCACTT+GGG | 0.541537 | 4_1:-23345840 | None:intergenic |
| TTAGAGCGTATTTGATCCGT+AGG | 0.545775 | 4_1:+23348480 | Msa0540670:CDS |
| AGATCTACGTGGAAAGGAGA+TGG | 0.548283 | 4_1:-23346162 | None:intergenic |
| TAGATCTGCAAAGAAATCAA+TGG | 0.548595 | 4_1:+23349284 | Msa0540670:CDS |
| CAACAAACTAAAACAGCGGA+TGG | 0.549712 | 4_1:-23349538 | None:intergenic |
| CGCAGTAGATCTACGTGGAA+AGG | 0.549790 | 4_1:-23346168 | None:intergenic |
| TGAAAGGGAATGGTGTGGTG+GGG | 0.551329 | 4_1:-23345863 | None:intergenic |
| CCTCACTGTTGATGCCATTG+AGG | 0.551515 | 4_1:+23348655 | Msa0540670:CDS |
| ATCCGGAAGGAAATCGAAGA+AGG | 0.554549 | 4_1:+23349405 | Msa0540670:CDS |
| ATGACGGCGGCGGCGGTGGT+CGG | 0.554558 | 4_1:+23346334 | Msa0540670:CDS |
| TCTTCGTGCCCTTAGAGAGC+TGG | 0.556613 | 4_1:+23348511 | Msa0540670:CDS |
| AAGGACAGTGATCTTCCGGC+AGG | 0.560848 | 4_1:-23349348 | None:intergenic |
| ATAATGATGGTGATGTTGAA+AGG | 0.562541 | 4_1:-23345879 | None:intergenic |
| GAGATTGTTCGAGGAAGGAA+GGG | 0.562842 | 4_1:-23346104 | None:intergenic |
| TAATGATGGTGATGTTGAAA+GGG | 0.563091 | 4_1:-23345878 | None:intergenic |
| AAGAAGAAGAATGACGGCGG+CGG | 0.564842 | 4_1:+23346324 | Msa0540670:CDS |
| CTCGGTGACTCGGTCACTCA+GGG | 0.565064 | 4_1:-23346238 | None:intergenic |
| ATATGCCTGATGGAGTCATC+CGG | 0.568869 | 4_1:+23349388 | Msa0540670:CDS |
| ATTGCTTCCTTAATCTCACT+GGG | 0.569391 | 4_1:-23349481 | None:intergenic |
| GAAAGAGAAAGAGAGTGTGA+AGG | 0.571631 | 4_1:+23346623 | Msa0540670:CDS |
| GATGAAGAGAACAAGGGTAA+TGG | 0.572576 | 4_1:-23346039 | None:intergenic |
| GTGTGGTGGGGTTTAAGGTG+GGG | 0.574190 | 4_1:-23345851 | None:intergenic |
| GGGTGGAGATTGTTCGAGGA+AGG | 0.575668 | 4_1:-23346109 | None:intergenic |
| GACGGCTGAGATTAAAGGAA+AGG | 0.576560 | 4_1:+23346494 | Msa0540670:CDS |
| GTGACTCTAACTCGGTGACT+CGG | 0.577648 | 4_1:-23346248 | None:intergenic |
| CGAAGGGTGGAGATTGTTCG+AGG | 0.580007 | 4_1:-23346113 | None:intergenic |
| TCTTCGTCGGCGGAGGAAAG+GGG | 0.580980 | 4_1:+23346283 | Msa0540670:CDS |
| TCAAATCTTAGACTAAGATC+CGG | 0.581767 | 4_1:-23349565 | None:intergenic |
| AATGGGAGGTACTACCTCAA+TGG | 0.582597 | 4_1:-23348669 | None:intergenic |
| TGATGAAGGCATTTGCAAAG+AGG | 0.583010 | 4_1:+23348378 | Msa0540670:intron |
| CGTTTCGAGCAGATCTTCGT+CGG | 0.583140 | 4_1:+23346270 | Msa0540670:CDS |
| GTGGTAGATCCCCAACCTGC+CGG | 0.585760 | 4_1:+23349333 | Msa0540670:CDS |
| CTTAACTTAGATTAAAACCA+TGG | 0.586963 | 4_1:-23349683 | None:intergenic |
| CGACGCCGCATAGCTAGTGA+TGG | 0.590161 | 4_1:+23348590 | Msa0540670:CDS |
| CTCGAAACGTGACTCTAACT+CGG | 0.591258 | 4_1:-23346256 | None:intergenic |
| AGGACCTTTGATATGCCTGA+TGG | 0.594745 | 4_1:+23349378 | Msa0540670:CDS |
| GTATTTGATCCGTAGGTCAA+AGG | 0.598182 | 4_1:+23348487 | Msa0540670:CDS |
| AGATCGAGATCGAGATCGAA+GGG | 0.599548 | 4_1:-23346129 | None:intergenic |
| TAGATCGAGATCGAGATCGA+AGG | 0.607072 | 4_1:-23346130 | None:intergenic |
| GACTCCATCAGGCATATCAA+AGG | 0.607706 | 4_1:-23349382 | None:intergenic |
| GGTAATGAAGAAATGTGAAG+AGG | 0.610557 | 4_1:-23346064 | None:intergenic |
| CCGCATAGCTAGTGATGGAG+TGG | 0.610682 | 4_1:+23348595 | Msa0540670:CDS |
| GAGGAAGATGAAGAGAACAA+GGG | 0.611726 | 4_1:-23346045 | None:intergenic |
| GGAAGGAAGGGAATAATGGA+AGG | 0.611992 | 4_1:-23346092 | None:intergenic |
| ATGGTGATGTTGAAAGGGAA+TGG | 0.612547 | 4_1:-23345873 | None:intergenic |
| TGTGTAGGGAGTTGATCTGA+TGG | 0.617974 | 4_1:+23349260 | Msa0540670:intron |
| ATCTGCAAAGAAATCAATGG+TGG | 0.618866 | 4_1:+23349287 | Msa0540670:CDS |
| CTAAAACAGCGGATGGAATG+CGG | 0.634340 | 4_1:-23349531 | None:intergenic |
| TGATGAAGCTGAGTGTACCT+AGG | 0.644579 | 4_1:+23349452 | Msa0540670:CDS |
| GCCTGATGGAGTCATCCGGA+AGG | 0.646491 | 4_1:+23349392 | Msa0540670:CDS |
| TTCGAGCAGATCTTCGTCGG+CGG | 0.651230 | 4_1:+23346273 | Msa0540670:CDS |
| CTAGCAACAAACTAAAACAG+CGG | 0.652177 | 4_1:-23349542 | None:intergenic |
| GATCACTGTCCTTCAAAAGG+AGG | 0.656472 | 4_1:+23349358 | Msa0540670:CDS |
| CGGCTGAGATTAAAGGAAAG+GGG | 0.661383 | 4_1:+23346496 | Msa0540670:CDS |
| AAACAGCGGATGGAATGCGG+TGG | 0.662985 | 4_1:-23349528 | None:intergenic |
| GCGGTGGTCGGAAGTACACG+TGG | 0.667489 | 4_1:+23346346 | Msa0540670:CDS |
| GCTGTGAAGCAACAACAACT+CGG | 0.672377 | 4_1:+23346207 | Msa0540670:CDS |
| GTGATGGAGTGGAACACCAG+AGG | 0.676023 | 4_1:+23348606 | Msa0540670:CDS |
| GGCTGAGATTAAAGGAAAGG+GGG | 0.679055 | 4_1:+23346497 | Msa0540670:CDS |
| TCGAGATCGAGATCGAAGGG+TGG | 0.680840 | 4_1:-23346126 | None:intergenic |
| GAAGGAAGGGAATAATGGAA+GGG | 0.689303 | 4_1:-23346091 | None:intergenic |
| GATGTTGAAAGGGAATGGTG+TGG | 0.691504 | 4_1:-23345868 | None:intergenic |
| ATTGAAGAATGTGAAATGGA+CGG | 0.700450 | 4_1:+23346476 | Msa0540670:CDS |
| AAGAAGAAGAAGAATGACGG+CGG | 0.714249 | 4_1:+23346321 | Msa0540670:CDS |
| CCTCAATGGCATCAACAGTG+AGG | 0.722927 | 4_1:-23348655 | None:intergenic |
| CCACTCCATCACTAGCTATG+CGG | 0.726532 | 4_1:-23348595 | None:intergenic |
| GGAGCAGTTCAAAATCAGAG+AGG | 0.727584 | 4_1:+23348404 | Msa0540670:CDS |
| GCTGGAAGCAATGCTTGATG+TGG | 0.729343 | 4_1:+23349314 | Msa0540670:CDS |
| TCACGCGCAGTAGATCTACG+TGG | 0.776368 | 4_1:-23346173 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATATTCTAATATTTCAT+TGG | - | chr4_1:23349168-23349187 | None:intergenic | 15.0% |
| !!! | TGAAATGAAATTGATAATGA+TGG | - | chr4_1:23345895-23345914 | None:intergenic | 20.0% |
| !!! | ACAAGTTGAATAAATTCTAA+AGG | - | chr4_1:23346819-23346838 | None:intergenic | 20.0% |
| !!! | ACAAGTTGAATAAATTCTAA+AGG | - | chr4_1:23346819-23346838 | None:intergenic | 20.0% |
| !!! | CTAACTTGTAATTTTATGTT+TGG | - | chr4_1:23347231-23347250 | None:intergenic | 20.0% |
| !!! | GTCATTTATCTTTTGAAAAA+TGG | - | chr4_1:23347266-23347285 | None:intergenic | 20.0% |
| !! | ACGTTTCAACATAAATAAAT+TGG | + | chr4_1:23347284-23347303 | Msa0540670:intron | 20.0% |
| !!! | AAATAAATTGGTGTCTTATA+CGG | + | chr4_1:23347296-23347315 | Msa0540670:intron | 20.0% |
| !! | AAATCCTCATAATTAACAAA+TGG | - | chr4_1:23347514-23347533 | None:intergenic | 20.0% |
| !! | TGTAAAACAATTCAAAAGTT+TGG | - | chr4_1:23348698-23348717 | None:intergenic | 20.0% |
| !!! | ATTCCTATATTTCCTTTTTT+TGG | - | chr4_1:23349135-23349154 | None:intergenic | 20.0% |
| !! | ATTAGAATATTGTTCGATAT+TGG | + | chr4_1:23349175-23349194 | Msa0540670:intron | 20.0% |
| !! | TTAGAATATTGTTCGATATT+GGG | + | chr4_1:23349176-23349195 | Msa0540670:intron | 20.0% |
| !!! | TTTGAGTACTTTTATATGTT+AGG | + | chr4_1:23349583-23349602 | Msa0540670:three_prime_UTR | 20.0% |
| !! | CAATGTTTACTACTAAATAA+TGG | - | chr4_1:23349728-23349747 | None:intergenic | 20.0% |
| !! | GGTTTGATAGAAAGTATAAA+TGG | + | chr4_1:23346400-23346419 | Msa0540670:CDS | 25.0% |
| !!! | TAAAGTTGTTGTTTTAAGAC+AGG | + | chr4_1:23346704-23346723 | Msa0540670:CDS | 25.0% |
| !! | TCAGTTAGAATCAATTTTTG+AGG | + | chr4_1:23347118-23347137 | Msa0540670:intron | 25.0% |
| !!! | AGAATTGATTTTGACATGTT+TGG | - | chr4_1:23347169-23347188 | None:intergenic | 25.0% |
| !! | TACTCTTCTCAAATCAATTT+TGG | + | chr4_1:23347188-23347207 | Msa0540670:intron | 25.0% |
| ! | ATTTGAAAACAGCTGTTATT+TGG | - | chr4_1:23347339-23347358 | None:intergenic | 25.0% |
| !!! | AGCTGTTTTCAAATTATTAC+CGG | + | chr4_1:23347345-23347364 | Msa0540670:intron | 25.0% |
| !! | TCTTCCATTTGTTAATTATG+AGG | + | chr4_1:23347507-23347526 | Msa0540670:intron | 25.0% |
| ! | ATTATGAGGATTTATGATCT+TGG | + | chr4_1:23347521-23347540 | Msa0540670:intron | 25.0% |
| ! | AGTTGGAAACAAAAAAAGAT+AGG | + | chr4_1:23347545-23347564 | Msa0540670:intron | 25.0% |
| ! | AAAATATGACGACTTGAATT+TGG | + | chr4_1:23347604-23347623 | Msa0540670:intron | 25.0% |
| ! | TTAAATTATGAGTCACAAGT+TGG | - | chr4_1:23347727-23347746 | None:intergenic | 25.0% |
| ! | TTTAATAAGTCAGAATGAGT+AGG | + | chr4_1:23347754-23347773 | Msa0540670:intron | 25.0% |
| !!! | TAGGTATATAAGGTTTTGAA+AGG | + | chr4_1:23347773-23347792 | Msa0540670:intron | 25.0% |
| ! | AGATCCTTACAATTCAAATT+TGG | + | chr4_1:23348096-23348115 | Msa0540670:intron | 25.0% |
| ! | GATTCCAAATTTGAATTGTA+AGG | - | chr4_1:23348103-23348122 | None:intergenic | 25.0% |
| ! | TATTAAGATTTAGATGCCAA+TGG | + | chr4_1:23348145-23348164 | Msa0540670:intron | 25.0% |
| ! | AAAATTTATCTCACTATGTG+AGG | - | chr4_1:23348231-23348250 | None:intergenic | 25.0% |
| ! | TATTGCAAAATCCAAGTTAA+AGG | + | chr4_1:23348535-23348554 | Msa0540670:CDS | 25.0% |
| ! | ATTCAAAAGTTTGGAGAAAT+GGG | - | chr4_1:23348689-23348708 | None:intergenic | 25.0% |
| ! | AATTCAAAAGTTTGGAGAAA+TGG | - | chr4_1:23348690-23348709 | None:intergenic | 25.0% |
| ! | TAGCCAAAAAAAGGAAATAT+AGG | + | chr4_1:23349129-23349148 | Msa0540670:intron | 25.0% |
| ! | AACAGAATATTACCATTCAT+CGG | + | chr4_1:23349208-23349227 | Msa0540670:intron | 25.0% |
| !! | TTTGTCTTTTGCTTAATGTT+TGG | + | chr4_1:23349628-23349647 | Msa0540670:three_prime_UTR | 25.0% |
| ! | ACTTCGATGAATGAAAAAAA+TGG | + | chr4_1:23349652-23349671 | Msa0540670:three_prime_UTR | 25.0% |
| ! | CTTCGATGAATGAAAAAAAT+GGG | + | chr4_1:23349653-23349672 | Msa0540670:three_prime_UTR | 25.0% |
| ! | CTTAACTTAGATTAAAACCA+TGG | - | chr4_1:23349686-23349705 | None:intergenic | 25.0% |
| !!! | CATGGTTTTAATCTAAGTTA+AGG | + | chr4_1:23349684-23349703 | Msa0540670:three_prime_UTR | 25.0% |
| !!! | GTTTTAATCTAAGTTAAGGT+AGG | + | chr4_1:23349688-23349707 | Msa0540670:three_prime_UTR | 25.0% |
| ! | TAATGATGGTGATGTTGAAA+GGG | - | chr4_1:23345881-23345900 | None:intergenic | 30.0% |
| ! | ATAATGATGGTGATGTTGAA+AGG | - | chr4_1:23345882-23345901 | None:intergenic | 30.0% |
| ! | AGTGTTGTTGTGATTTGATT+TGG | - | chr4_1:23345921-23345940 | None:intergenic | 30.0% |
| TGATTTCGTATCTTCTGAAT+CGG | - | chr4_1:23346008-23346027 | None:intergenic | 30.0% | |
| AAGAAGAAGAAGAAGAATGA+CGG | + | chr4_1:23346318-23346337 | Msa0540670:CDS | 30.0% | |
| ATTAAAGATGGAGAGAAGAA+TGG | + | chr4_1:23346378-23346397 | Msa0540670:CDS | 30.0% | |
| TTAAAGATGGAGAGAAGAAT+GGG | + | chr4_1:23346379-23346398 | Msa0540670:CDS | 30.0% | |
| GTATAAATGGATAGCTGAAT+TGG | + | chr4_1:23346413-23346432 | Msa0540670:CDS | 30.0% | |
| CTGTATTGAAGAATGTGAAA+TGG | + | chr4_1:23346472-23346491 | Msa0540670:CDS | 30.0% | |
| ATTGAAGAATGTGAAATGGA+CGG | + | chr4_1:23346476-23346495 | Msa0540670:CDS | 30.0% | |
| !! | TATACATTTGCTGTTGAAAG+TGG | + | chr4_1:23346543-23346562 | Msa0540670:CDS | 30.0% |
| GAATGTGAATGAAAAAGAGA+AGG | + | chr4_1:23346593-23346612 | Msa0540670:CDS | 30.0% | |
| ACAACTTTATGATCATCATC+AGG | - | chr4_1:23346693-23346712 | None:intergenic | 30.0% | |
| !! | TTTGGTTCTATGACAAGATT+TGG | - | chr4_1:23347019-23347038 | None:intergenic | 30.0% |
| !! | TTTATGTTTGGTTCCACTTT+TGG | - | chr4_1:23347219-23347238 | None:intergenic | 30.0% |
| ! | GTGTTGGTGTTTCATATATT+AGG | + | chr4_1:23347394-23347413 | Msa0540670:intron | 30.0% |
| !!! | AGATTTTTAAAACCCTAGCT+AGG | + | chr4_1:23347421-23347440 | Msa0540670:intron | 30.0% |
| TCAGAATGAGTAGGTATATA+AGG | + | chr4_1:23347763-23347782 | Msa0540670:intron | 30.0% | |
| !!! | GTATATAAGGTTTTGAAAGG+TGG | + | chr4_1:23347776-23347795 | Msa0540670:intron | 30.0% |
| !! | TGTGCATTACTTTTCCTTTT+GGG | + | chr4_1:23347981-23348000 | Msa0540670:intron | 30.0% |
| TTGTCGTTGTATATCTATAG+AGG | + | chr4_1:23348259-23348278 | Msa0540670:intron | 30.0% | |
| ! | TAATTTTCTCAGAAAACCTC+TGG | - | chr4_1:23348625-23348644 | None:intergenic | 30.0% |
| ! | AAACTGTAGTGCAATTTTTG+TGG | + | chr4_1:23348757-23348776 | Msa0540670:intron | 30.0% |
| CTGTATTTGCTTCAAGAATT+AGG | + | chr4_1:23348915-23348934 | Msa0540670:intron | 30.0% | |
| ACTCAAGAAATCAAACTTTG+TGG | - | chr4_1:23348995-23349014 | None:intergenic | 30.0% | |
| ! | TTGCAACAACAAAGTCTTTT+TGG | - | chr4_1:23349039-23349058 | None:intergenic | 30.0% |
| TAGATCTGCAAAGAAATCAA+TGG | + | chr4_1:23349284-23349303 | Msa0540670:CDS | 30.0% | |
| TCAAATCTTAGACTAAGATC+CGG | - | chr4_1:23349568-23349587 | None:intergenic | 30.0% | |
| GGCTTTCATATTTCATCTAA+TGG | + | chr4_1:23349604-23349623 | Msa0540670:three_prime_UTR | 30.0% | |
| GATTTCGTATCTTCTGAATC+GGG | - | chr4_1:23346007-23346026 | None:intergenic | 35.0% | |
| GGTAATGAAGAAATGTGAAG+AGG | - | chr4_1:23346067-23346086 | None:intergenic | 35.0% | |
| AGAAAGAAGATTGCGTATTG+TGG | + | chr4_1:23346656-23346675 | Msa0540670:CDS | 35.0% | |
| !! | ACCTTCAACTCACTTTTAGT+CGG | + | chr4_1:23346976-23346995 | Msa0540670:intron | 35.0% |
| !! | TTGACTCACTTTTAGACGTT+TGG | - | chr4_1:23347037-23347056 | None:intergenic | 35.0% |
| AACGTCTAAAAGTGAGTCAA+AGG | + | chr4_1:23347037-23347056 | Msa0540670:intron | 35.0% | |
| ! | TAAATTGGTGTCTTATACGG+TGG | + | chr4_1:23347299-23347318 | Msa0540670:intron | 35.0% |
| GCTAGTATCATGTAATGTGT+TGG | + | chr4_1:23347378-23347397 | Msa0540670:intron | 35.0% | |
| TAACAAATGGAAGAGTAACG+TGG | - | chr4_1:23347501-23347520 | None:intergenic | 35.0% | |
| GGATTTATGATCTTGGAAGT+TGG | + | chr4_1:23347528-23347547 | Msa0540670:intron | 35.0% | |
| !!! | TTTTTTGCTGTGACTTGATG+TGG | + | chr4_1:23347680-23347699 | Msa0540670:intron | 35.0% |
| !! | GTGTGCATTACTTTTCCTTT+TGG | + | chr4_1:23347980-23347999 | Msa0540670:intron | 35.0% |
| AGATTTAGATGCCAATGGTT+TGG | + | chr4_1:23348150-23348169 | Msa0540670:intron | 35.0% | |
| !! | ACTAACTTGCTTGATGATGA+AGG | + | chr4_1:23348364-23348383 | Msa0540670:intron | 35.0% |
| AAATCAGAGAGGCAAAAAGA+AGG | + | chr4_1:23348415-23348434 | Msa0540670:CDS | 35.0% | |
| ! | AGCTCTGATTTCCTTTAACT+TGG | - | chr4_1:23348549-23348568 | None:intergenic | 35.0% |
| TTGAAGCAAATACAGACATC+TGG | - | chr4_1:23348910-23348929 | None:intergenic | 35.0% | |
| CATTCAAATTTCAAACCGAC+TGG | - | chr4_1:23349064-23349083 | None:intergenic | 35.0% | |
| TTTGCTGCATTATCATAGTG+TGG | + | chr4_1:23349106-23349125 | Msa0540670:intron | 35.0% | |
| ATAGTGTGGTAGCCAAAAAA+AGG | + | chr4_1:23349120-23349139 | Msa0540670:intron | 35.0% | |
| CTGTTAGATAAACCGATGAA+TGG | - | chr4_1:23349223-23349242 | None:intergenic | 35.0% | |
| !! | CATTCATCGGTTTATCTAAC+AGG | + | chr4_1:23349221-23349240 | Msa0540670:intron | 35.0% |
| TTGTTCATTTCCTGTTGTGT+AGG | + | chr4_1:23349245-23349264 | Msa0540670:intron | 35.0% | |
| TGTTCATTTCCTGTTGTGTA+GGG | + | chr4_1:23349246-23349265 | Msa0540670:intron | 35.0% | |
| ATCTGCAAAGAAATCAATGG+TGG | + | chr4_1:23349287-23349306 | Msa0540670:CDS | 35.0% | |
| ATTGCTTCCTTAATCTCACT+GGG | - | chr4_1:23349484-23349503 | None:intergenic | 35.0% | |
| TATTGCTTCCTTAATCTCAC+TGG | - | chr4_1:23349485-23349504 | None:intergenic | 35.0% | |
| CTAGCAACAAACTAAAACAG+CGG | - | chr4_1:23349545-23349564 | None:intergenic | 35.0% | |
| !!! | TGTTTTAGTTTGTTGCTAGC+CGG | + | chr4_1:23349546-23349565 | Msa0540670:three_prime_UTR | 35.0% |
| ! | ATGGTGATGTTGAAAGGGAA+TGG | - | chr4_1:23345876-23345895 | None:intergenic | 40.0% |
| !! | AGTGAGTGAAATCGGTGTTA+AGG | - | chr4_1:23345971-23345990 | None:intergenic | 40.0% |
| GTTGAGTGAGTGAGTGAAAT+CGG | - | chr4_1:23345979-23345998 | None:intergenic | 40.0% | |
| GATGAAGAGAACAAGGGTAA+TGG | - | chr4_1:23346042-23346061 | None:intergenic | 40.0% | |
| GAGGAAGATGAAGAGAACAA+GGG | - | chr4_1:23346048-23346067 | None:intergenic | 40.0% | |
| AGAGGAAGATGAAGAGAACA+AGG | - | chr4_1:23346049-23346068 | None:intergenic | 40.0% | |
| ! | AGGGAATAATGGAAGGGTTT+CGG | - | chr4_1:23346088-23346107 | None:intergenic | 40.0% |
| ! | GAAGGAAGGGAATAATGGAA+GGG | - | chr4_1:23346094-23346113 | None:intergenic | 40.0% |
| AAGAAGAAGAAGAATGACGG+CGG | + | chr4_1:23346321-23346340 | Msa0540670:CDS | 40.0% | |
| TGGACAGCTGAGATTAAAGA+TGG | + | chr4_1:23346366-23346385 | Msa0540670:CDS | 40.0% | |
| AAATGGACGGCTGAGATTAA+AGG | + | chr4_1:23346489-23346508 | Msa0540670:CDS | 40.0% | |
| ACGGCTGAGATTAAAGGAAA+GGG | + | chr4_1:23346495-23346514 | Msa0540670:CDS | 40.0% | |
| ! | GAAAGAGAAAGAGAGTGTGA+AGG | + | chr4_1:23346623-23346642 | Msa0540670:CDS | 40.0% |
| ! | TCCGACTAAAAGTGAGTTGA+AGG | - | chr4_1:23346980-23346999 | None:intergenic | 40.0% |
| !!! | AATTTTGGCTCCTCCAAAAG+TGG | + | chr4_1:23347203-23347222 | Msa0540670:intron | 40.0% |
| !! | ATGTTTGGTTCCACTTTTGG+AGG | - | chr4_1:23347216-23347235 | None:intergenic | 40.0% |
| !! | GATACTAGCATTGACAACAC+CGG | - | chr4_1:23347367-23347386 | None:intergenic | 40.0% |
| ! | TTTAAAACCCTAGCTAGGAC+AGG | + | chr4_1:23347426-23347445 | Msa0540670:intron | 40.0% |
| TTAAAACCCTAGCTAGGACA+GGG | + | chr4_1:23347427-23347446 | Msa0540670:intron | 40.0% | |
| AAATATTTGCCTCCTATCCC+TGG | + | chr4_1:23347631-23347650 | Msa0540670:intron | 40.0% | |
| TCCCATGTAGAACTGTAACA+CGG | - | chr4_1:23348028-23348047 | None:intergenic | 40.0% | |
| !! | CATGTTGATAGCCAAACCAT+TGG | - | chr4_1:23348164-23348183 | None:intergenic | 40.0% |
| !! | TGATGAAGGCATTTGCAAAG+AGG | + | chr4_1:23348378-23348397 | Msa0540670:intron | 40.0% |
| ! | AAGGCATTTGCAAAGAGGTT+TGG | + | chr4_1:23348383-23348402 | Msa0540670:intron | 40.0% |
| ATCAAATACGCAGCATCTTG+AGG | - | chr4_1:23348449-23348468 | None:intergenic | 40.0% | |
| ACGGATCAAATACGCTCTAA+AGG | - | chr4_1:23348480-23348499 | None:intergenic | 40.0% | |
| TTAGAGCGTATTTGATCCGT+AGG | + | chr4_1:23348480-23348499 | Msa0540670:CDS | 40.0% | |
| GTATTTGATCCGTAGGTCAA+AGG | + | chr4_1:23348487-23348506 | Msa0540670:CDS | 40.0% | |
| CAAAAGTTTGGAGAAATGGG+AGG | - | chr4_1:23348686-23348705 | None:intergenic | 40.0% | |
| TATGATACAAGCTCTCGTCA+AGG | - | chr4_1:23348786-23348805 | None:intergenic | 40.0% | |
| AACAGTTGCAAAATCGACCT+TGG | + | chr4_1:23348875-23348894 | Msa0540670:intron | 40.0% | |
| !! | TTTGTTGTTGCAAGACCAGT+CGG | + | chr4_1:23349046-23349065 | Msa0540670:intron | 40.0% |
| GCAAAATTCTGAATGTCACG+TGG | - | chr4_1:23349091-23349110 | None:intergenic | 40.0% | |
| TTTGAAGGACAGTGATCTTC+CGG | - | chr4_1:23349355-23349374 | None:intergenic | 40.0% | |
| GAAGATCACTGTCCTTCAAA+AGG | + | chr4_1:23349355-23349374 | Msa0540670:CDS | 40.0% | |
| ! | ATCAAAGGTCCTCCTTTTGA+AGG | - | chr4_1:23349370-23349389 | None:intergenic | 40.0% |
| ! | GAAGTATCCCAGTGAGATTA+AGG | + | chr4_1:23349474-23349493 | Msa0540670:three_prime_UTR | 40.0% |
| CAACAAACTAAAACAGCGGA+TGG | - | chr4_1:23349541-23349560 | None:intergenic | 40.0% | |
| TTGAAAGGGAATGGTGTGGT+GGG | - | chr4_1:23345867-23345886 | None:intergenic | 45.0% | |
| GATGTTGAAAGGGAATGGTG+TGG | - | chr4_1:23345871-23345890 | None:intergenic | 45.0% | |
| GTATCTTCTGAATCGGGACA+TGG | - | chr4_1:23346001-23346020 | None:intergenic | 45.0% | |
| ! | GGAAGGAAGGGAATAATGGA+AGG | - | chr4_1:23346095-23346114 | None:intergenic | 45.0% |
| TCGAGGAAGGAAGGGAATAA+TGG | - | chr4_1:23346099-23346118 | None:intergenic | 45.0% | |
| GAGATTGTTCGAGGAAGGAA+GGG | - | chr4_1:23346107-23346126 | None:intergenic | 45.0% | |
| AGATCGAGATCGAGATCGAA+GGG | - | chr4_1:23346132-23346151 | None:intergenic | 45.0% | |
| TAGATCGAGATCGAGATCGA+AGG | - | chr4_1:23346133-23346152 | None:intergenic | 45.0% | |
| AGATCTACGTGGAAAGGAGA+TGG | - | chr4_1:23346165-23346184 | None:intergenic | 45.0% | |
| GCTGTGAAGCAACAACAACT+CGG | + | chr4_1:23346207-23346226 | Msa0540670:CDS | 45.0% | |
| CTCGAAACGTGACTCTAACT+CGG | - | chr4_1:23346259-23346278 | None:intergenic | 45.0% | |
| GACGGCTGAGATTAAAGGAA+AGG | + | chr4_1:23346494-23346513 | Msa0540670:CDS | 45.0% | |
| CGGCTGAGATTAAAGGAAAG+GGG | + | chr4_1:23346496-23346515 | Msa0540670:CDS | 45.0% | |
| GGCTGAGATTAAAGGAAAGG+GGG | + | chr4_1:23346497-23346516 | Msa0540670:CDS | 45.0% | |
| AAAGGAAAGGGGGAAGATAG+TGG | + | chr4_1:23346507-23346526 | Msa0540670:CDS | 45.0% | |
| AAGGAAAGGGGGAAGATAGT+GGG | + | chr4_1:23346508-23346527 | Msa0540670:CDS | 45.0% | |
| !! | GGGAAGATAGTGGGAATGAT+AGG | + | chr4_1:23346517-23346536 | Msa0540670:CDS | 45.0% |
| ACAAAACCCTGTCCTAGCTA+GGG | - | chr4_1:23347436-23347455 | None:intergenic | 45.0% | |
| ! | CCTATTTTGCCATACCACCA+GGG | - | chr4_1:23347651-23347670 | None:intergenic | 45.0% |
| CCTGGTGGTATGGCAAAATA+GGG | + | chr4_1:23347649-23347668 | Msa0540670:intron | 45.0% | |
| GGCTCATTTCTCCCCAAATT+CGG | + | chr4_1:23348002-23348021 | Msa0540670:intron | 45.0% | |
| ACTGTAACACGGCCGAATTT+GGG | - | chr4_1:23348017-23348036 | None:intergenic | 45.0% | |
| AACTGTAACACGGCCGAATT+TGG | - | chr4_1:23348018-23348037 | None:intergenic | 45.0% | |
| GCCGTGTTACAGTTCTACAT+GGG | + | chr4_1:23348024-23348043 | Msa0540670:intron | 45.0% | |
| GGAGCAGTTCAAAATCAGAG+AGG | + | chr4_1:23348404-23348423 | Msa0540670:CDS | 45.0% | |
| TGCAATAGCCAGCTCTCTAA+GGG | - | chr4_1:23348522-23348541 | None:intergenic | 45.0% | |
| TTGCAATAGCCAGCTCTCTA+AGG | - | chr4_1:23348523-23348542 | None:intergenic | 45.0% | |
| !! | AATGGGAGGTACTACCTCAA+TGG | - | chr4_1:23348672-23348691 | None:intergenic | 45.0% |
| ACATCTGGAAAGCAGTACCA+AGG | - | chr4_1:23348895-23348914 | None:intergenic | 45.0% | |
| AGATCAACTCCCTACACAAC+AGG | - | chr4_1:23349258-23349277 | None:intergenic | 45.0% | |
| ! | TGTGTAGGGAGTTGATCTGA+TGG | + | chr4_1:23349260-23349279 | Msa0540670:intron | 45.0% |
| !! | GAAATCAATGGTGGATGAGC+TGG | + | chr4_1:23349296-23349315 | Msa0540670:CDS | 45.0% |
| GATCACTGTCCTTCAAAAGG+AGG | + | chr4_1:23349358-23349377 | Msa0540670:CDS | 45.0% | |
| AGGACCTTTGATATGCCTGA+TGG | + | chr4_1:23349378-23349397 | Msa0540670:CDS | 45.0% | |
| GACTCCATCAGGCATATCAA+AGG | - | chr4_1:23349385-23349404 | None:intergenic | 45.0% | |
| ATATGCCTGATGGAGTCATC+CGG | + | chr4_1:23349388-23349407 | Msa0540670:CDS | 45.0% | |
| ATCCGGAAGGAAATCGAAGA+AGG | + | chr4_1:23349405-23349424 | Msa0540670:CDS | 45.0% | |
| CACCTTCTTCGATTTCCTTC+CGG | - | chr4_1:23349410-23349429 | None:intergenic | 45.0% | |
| TGATGAAGCTGAGTGTACCT+AGG | + | chr4_1:23349452-23349471 | Msa0540670:CDS | 45.0% | |
| ATCTCACTGGGATACTTCCT+AGG | - | chr4_1:23349472-23349491 | None:intergenic | 45.0% | |
| CTAAAACAGCGGATGGAATG+CGG | - | chr4_1:23349534-23349553 | None:intergenic | 45.0% | |
| ! | AAAAAATGGGCTTCGTGCCA+TGG | + | chr4_1:23349666-23349685 | Msa0540670:three_prime_UTR | 45.0% |
| !! | GTTTAAGGTGGGGAAGCACT+TGG | - | chr4_1:23345844-23345863 | None:intergenic | 50.0% |
| ! | GAATGGTGTGGTGGGGTTTA+AGG | - | chr4_1:23345859-23345878 | None:intergenic | 50.0% |
| TGAAAGGGAATGGTGTGGTG+GGG | - | chr4_1:23345866-23345885 | None:intergenic | 50.0% | |
| GTTGAAAGGGAATGGTGTGG+TGG | - | chr4_1:23345868-23345887 | None:intergenic | 50.0% | |
| GGAGATTGTTCGAGGAAGGA+AGG | - | chr4_1:23346108-23346127 | None:intergenic | 50.0% | |
| CGCAGTAGATCTACGTGGAA+AGG | - | chr4_1:23346171-23346190 | None:intergenic | 50.0% | |
| ! | GTGACTCTAACTCGGTGACT+CGG | - | chr4_1:23346251-23346270 | None:intergenic | 50.0% |
| CGTTTCGAGCAGATCTTCGT+CGG | + | chr4_1:23346270-23346289 | Msa0540670:CDS | 50.0% | |
| AAGAAGAAGAATGACGGCGG+CGG | + | chr4_1:23346324-23346343 | Msa0540670:CDS | 50.0% | |
| CACAAAACCCTGTCCTAGCT+AGG | - | chr4_1:23347437-23347456 | None:intergenic | 50.0% | |
| TATTTGCCTCCTATCCCTGG+TGG | + | chr4_1:23347634-23347653 | Msa0540670:intron | 50.0% | |
| TTTGCCATACCACCAGGGAT+AGG | - | chr4_1:23347646-23347665 | None:intergenic | 50.0% | |
| CCCTGGTGGTATGGCAAAAT+AGG | + | chr4_1:23347648-23347667 | Msa0540670:intron | 50.0% | |
| ! | CCCTATTTTGCCATACCACC+AGG | - | chr4_1:23347652-23347671 | None:intergenic | 50.0% |
| TGGGGAGAAATGAGCCCAAA+AGG | - | chr4_1:23347998-23348017 | None:intergenic | 50.0% | |
| CTGTAACACGGCCGAATTTG+GGG | - | chr4_1:23348016-23348035 | None:intergenic | 50.0% | |
| GGCCGTGTTACAGTTCTACA+TGG | + | chr4_1:23348023-23348042 | Msa0540670:intron | 50.0% | |
| CACGAAGAGCCTTTGACCTA+CGG | - | chr4_1:23348499-23348518 | None:intergenic | 50.0% | |
| CCACTCCATCACTAGCTATG+CGG | - | chr4_1:23348598-23348617 | None:intergenic | 50.0% | |
| CCTCAATGGCATCAACAGTG+AGG | - | chr4_1:23348658-23348677 | None:intergenic | 50.0% | |
| CCTCACTGTTGATGCCATTG+AGG | + | chr4_1:23348655-23348674 | Msa0540670:CDS | 50.0% | |
| GCTGGAAGCAATGCTTGATG+TGG | + | chr4_1:23349314-23349333 | Msa0540670:CDS | 50.0% | |
| ! | GTGTGGTGGGGTTTAAGGTG+GGG | - | chr4_1:23345854-23345873 | None:intergenic | 55.0% |
| ! | GGTGTGGTGGGGTTTAAGGT+GGG | - | chr4_1:23345855-23345874 | None:intergenic | 55.0% |
| ! | TGGTGTGGTGGGGTTTAAGG+TGG | - | chr4_1:23345856-23345875 | None:intergenic | 55.0% |
| GGGTGGAGATTGTTCGAGGA+AGG | - | chr4_1:23346112-23346131 | None:intergenic | 55.0% | |
| CGAAGGGTGGAGATTGTTCG+AGG | - | chr4_1:23346116-23346135 | None:intergenic | 55.0% | |
| TCGAGATCGAGATCGAAGGG+TGG | - | chr4_1:23346129-23346148 | None:intergenic | 55.0% | |
| TCACGCGCAGTAGATCTACG+TGG | - | chr4_1:23346176-23346195 | None:intergenic | 55.0% | |
| TTCGAGCAGATCTTCGTCGG+CGG | + | chr4_1:23346273-23346292 | Msa0540670:CDS | 55.0% | |
| ATCTTCGTCGGCGGAGGAAA+GGG | + | chr4_1:23346282-23346301 | Msa0540670:CDS | 55.0% | |
| TCTTCGTGCCCTTAGAGAGC+TGG | + | chr4_1:23348511-23348530 | Msa0540670:CDS | 55.0% | |
| CATCACTAGCTATGCGGCGT+CGG | - | chr4_1:23348592-23348611 | None:intergenic | 55.0% | |
| ! | CCGCATAGCTAGTGATGGAG+TGG | + | chr4_1:23348595-23348614 | Msa0540670:CDS | 55.0% |
| ! | GTGATGGAGTGGAACACCAG+AGG | + | chr4_1:23348606-23348625 | Msa0540670:CDS | 55.0% |
| AGTGATCTTCCGGCAGGTTG+GGG | - | chr4_1:23349345-23349364 | None:intergenic | 55.0% | |
| CAGTGATCTTCCGGCAGGTT+GGG | - | chr4_1:23349346-23349365 | None:intergenic | 55.0% | |
| ACAGTGATCTTCCGGCAGGT+TGG | - | chr4_1:23349347-23349366 | None:intergenic | 55.0% | |
| AAGGACAGTGATCTTCCGGC+AGG | - | chr4_1:23349351-23349370 | None:intergenic | 55.0% | |
| TCCTTCCGGATGACTCCATC+AGG | - | chr4_1:23349396-23349415 | None:intergenic | 55.0% | |
| AAACAGCGGATGGAATGCGG+TGG | - | chr4_1:23349531-23349550 | None:intergenic | 55.0% | |
| !! | CTCGGTGACTCGGTCACTCA+GGG | - | chr4_1:23346241-23346260 | None:intergenic | 60.0% |
| !! | ACTCGGTGACTCGGTCACTC+AGG | - | chr4_1:23346242-23346261 | None:intergenic | 60.0% |
| GATCTTCGTCGGCGGAGGAA+AGG | + | chr4_1:23346281-23346300 | Msa0540670:CDS | 60.0% | |
| TCTTCGTCGGCGGAGGAAAG+GGG | + | chr4_1:23346283-23346302 | Msa0540670:CDS | 60.0% | |
| AAGAAGAATGACGGCGGCGG+CGG | + | chr4_1:23346327-23346346 | Msa0540670:CDS | 60.0% | |
| GCCTCCTATCCCTGGTGGTA+TGG | + | chr4_1:23347639-23347658 | Msa0540670:intron | 60.0% | |
| GCCATACCACCAGGGATAGG+AGG | - | chr4_1:23347643-23347662 | None:intergenic | 60.0% | |
| ! | ACTAGCTATGCGGCGTCGGA+AGG | - | chr4_1:23348588-23348607 | None:intergenic | 60.0% |
| CGACGCCGCATAGCTAGTGA+TGG | + | chr4_1:23348590-23348609 | Msa0540670:CDS | 60.0% | |
| GTGGTAGATCCCCAACCTGC+CGG | + | chr4_1:23349333-23349352 | Msa0540670:CDS | 60.0% | |
| GCCTGATGGAGTCATCCGGA+AGG | + | chr4_1:23349392-23349411 | Msa0540670:CDS | 60.0% | |
| GAGCAGATCTTCGTCGGCGG+AGG | + | chr4_1:23346276-23346295 | Msa0540670:CDS | 65.0% | |
| ! | GCGGTGGTCGGAAGTACACG+TGG | + | chr4_1:23346346-23346365 | Msa0540670:CDS | 65.0% |
| AAGAATGACGGCGGCGGCGG+TGG | + | chr4_1:23346330-23346349 | Msa0540670:CDS | 70.0% | |
| ATGACGGCGGCGGCGGTGGT+CGG | + | chr4_1:23346334-23346353 | Msa0540670:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 23345841 | 23349787 | 23345841 | ID=Msa0540670;Name=Msa0540670 |
| chr4_1 | mRNA | 23345841 | 23349787 | 23345841 | ID=Msa0540670-mRNA-1;Parent=Msa0540670;Name=Msa0540670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=159|1|1|1|1|1|3|314|407 |
| chr4_1 | exon | 23345841 | 23346725 | 23345841 | ID=Msa0540670-mRNA-1:exon:6429;Parent=Msa0540670-mRNA-1 |
| chr4_1 | exon | 23348386 | 23348676 | 23348386 | ID=Msa0540670-mRNA-1:exon:6430;Parent=Msa0540670-mRNA-1 |
| chr4_1 | exon | 23349267 | 23349787 | 23349267 | ID=Msa0540670-mRNA-1:exon:6431;Parent=Msa0540670-mRNA-1 |
| chr4_1 | five_prime_UTR | 23345841 | 23345999 | 23345841 | ID=Msa0540670-mRNA-1:five_prime_utr;Parent=Msa0540670-mRNA-1 |
| chr4_1 | CDS | 23346000 | 23346725 | 23346000 | ID=Msa0540670-mRNA-1:cds;Parent=Msa0540670-mRNA-1 |
| chr4_1 | CDS | 23348386 | 23348676 | 23348386 | ID=Msa0540670-mRNA-1:cds;Parent=Msa0540670-mRNA-1 |
| chr4_1 | CDS | 23349267 | 23349473 | 23349267 | ID=Msa0540670-mRNA-1:cds;Parent=Msa0540670-mRNA-1 |
| chr4_1 | three_prime_UTR | 23349474 | 23349787 | 23349474 | ID=Msa0540670-mRNA-1:three_prime_utr;Parent=Msa0540670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
