Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637960 | XP_013443594.1 | 74.847 | 163 | 2 | 1 | 1 | 124 | 1 | 163 | 1.25e-73 | 226 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637960 | sp|B9RW00|CSPL6_RICCO | 69.912 | 113 | 34 | 0 | 12 | 124 | 51 | 163 | 3.66e-54 | 169 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637960 | Msa0677130 | 0.831400 | 1.705544e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637960 | MtrunA17_Chr4g0021111 | 74.847 | 163 | 2 | 1 | 1 | 124 | 1 | 163 | 1.15e-77 | 226 |
| Msa0637960 | MtrunA17_Chr4g0042551 | 44.762 | 105 | 51 | 2 | 14 | 111 | 106 | 210 | 8.12e-15 | 67.8 |
| Msa0637960 | MtrunA17_Chr2g0303151 | 33.929 | 112 | 67 | 2 | 14 | 118 | 81 | 192 | 8.32e-14 | 64.7 |
| Msa0637960 | MtrunA17_Chr7g0268681 | 36.111 | 72 | 46 | 0 | 41 | 112 | 111 | 182 | 2.61e-11 | 58.2 |
| Msa0637960 | MtrunA17_Chr8g0381001 | 34.545 | 110 | 65 | 2 | 14 | 116 | 80 | 189 | 3.74e-11 | 57.8 |
| Msa0637960 | MtrunA17_Chr7g0217691 | 32.710 | 107 | 65 | 2 | 12 | 111 | 73 | 179 | 6.40e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637960 | AT1G03700.1 | 62.832 | 113 | 42 | 0 | 12 | 124 | 52 | 164 | 1.05e-50 | 158 |
| Msa0637960 | AT4G03540.1 | 63.717 | 113 | 41 | 0 | 12 | 124 | 52 | 164 | 3.27e-47 | 149 |
| Msa0637960 | AT5G44550.1 | 36.607 | 112 | 64 | 2 | 14 | 118 | 72 | 183 | 1.32e-13 | 64.7 |
| Msa0637960 | AT1G14160.1 | 34.862 | 109 | 60 | 3 | 12 | 111 | 96 | 202 | 1.31e-12 | 62.0 |
| Msa0637960 | AT5G15290.1 | 36.170 | 94 | 53 | 1 | 12 | 98 | 73 | 166 | 1.03e-11 | 59.3 |
| Msa0637960 | AT2G27370.1 | 38.679 | 106 | 54 | 3 | 15 | 111 | 110 | 213 | 6.12e-11 | 57.8 |
Find 25 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATGTGATTGCAAAATT+TGG | 0.163683 | 4_3:-31375268 | None:intergenic |
| AACTCTATTGTAACTGTCTA+TGG | 0.255815 | 4_3:+31374292 | Msa0637960:CDS |
| ACTTGTGGTCGCCATGGATA+TGG | 0.315968 | 4_3:+31374357 | Msa0637960:CDS |
| GCTTTAGTCGCTAGTTTCAT+TGG | 0.393377 | 4_3:+31375294 | Msa0637960:CDS |
| CTCAAGCATCTCTGCAGCTT+TGG | 0.400682 | 4_3:+31375179 | Msa0637960:CDS |
| GTCATGTGATTGCAAAATTT+GGG | 0.430792 | 4_3:-31375267 | None:intergenic |
| GAATCTGCCACCTATTGTTA+AGG | 0.432387 | 4_3:+31373824 | Msa0637960:CDS |
| CGCCAGAGCAAGCTTTCTGC+AGG | 0.458432 | 4_3:-31374334 | None:intergenic |
| AGGCCAAGAACCTTAACAAT+AGG | 0.459316 | 4_3:-31373834 | None:intergenic |
| GCTGCCTGGCTACCGATTTG+TGG | 0.463642 | 4_3:+31375237 | Msa0637960:CDS |
| TTCCTGCAGAAAGCTTGCTC+TGG | 0.469885 | 4_3:+31374332 | Msa0637960:CDS |
| ATAGCTCAAGTGGCAAAGAA+TGG | 0.508607 | 4_3:+31375204 | Msa0637960:CDS |
| TTGGGAACTGAACCACAAAT+CGG | 0.511633 | 4_3:-31375249 | None:intergenic |
| AGGGTCAAGGACAGTATGAA+TGG | 0.516263 | 4_3:-31375349 | None:intergenic |
| AAGCTTGCTCTGGCGACTTG+TGG | 0.523109 | 4_3:+31374342 | Msa0637960:CDS |
| ATGGAAACAATTATGCTGCC+TGG | 0.537088 | 4_3:+31375223 | Msa0637960:CDS |
| TTCTCAAAAGGAGAGGGTCA+AGG | 0.544463 | 4_3:-31375362 | None:intergenic |
| TGAACCACAAATCGGTAGCC+AGG | 0.545474 | 4_3:-31375241 | None:intergenic |
| CTGGCGACTTGTGGTCGCCA+TGG | 0.548545 | 4_3:+31374351 | Msa0637960:CDS |
| GTGGCAGATTCTACTAGTCT+TGG | 0.560428 | 4_3:-31373812 | None:intergenic |
| GATTCTACTAGTCTTGGCCA+TGG | 0.580820 | 4_3:-31373806 | None:intergenic |
| AGCTTTGGCTATAGCTCAAG+TGG | 0.581117 | 4_3:+31375194 | Msa0637960:CDS |
| TTAGGACATTACCATATCCA+TGG | 0.585943 | 4_3:-31374368 | None:intergenic |
| AGCTTTCTGCAGGAAGAAAG+AGG | 0.586262 | 4_3:-31374324 | None:intergenic |
| CCAAGAACCTTAACAATAGG+TGG | 0.592009 | 4_3:-31373831 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTATTTTTATGGATTTA+AGG | - | chr4_3:31374809-31374828 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | - | chr4_3:31374879-31374898 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | - | chr4_3:31374880-31374899 | None:intergenic | 15.0% |
| !! | AAAGAAATGCTAAATTATTA+TGG | + | chr4_3:31375087-31375106 | Msa0637960:intron | 15.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | - | chr4_3:31374809-31374828 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | - | chr4_3:31374879-31374898 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | - | chr4_3:31374880-31374899 | None:intergenic | 15.0% |
| !! | AAAGAAATGCTAAATTATTA+TGG | + | chr4_3:31375087-31375106 | Msa0637960:intron | 15.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | - | chr4_3:31374482-31374501 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | + | chr4_3:31374495-31374514 | Msa0637960:intron | 20.0% |
| !! | AAATGCTAAAATTGTAAAGT+CGG | - | chr4_3:31374553-31374572 | None:intergenic | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | - | chr4_3:31374612-31374631 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | - | chr4_3:31374805-31374824 | None:intergenic | 20.0% |
| !!! | ATGAGAAGGTTTTATTTTTA+TGG | - | chr4_3:31374817-31374836 | None:intergenic | 20.0% |
| !!! | TTTTCGTTTTTTCATTTCAT+TGG | - | chr4_3:31375069-31375088 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | + | chr4_3:31375093-31375112 | Msa0637960:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | + | chr4_3:31375137-31375156 | Msa0637960:intron | 20.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | - | chr4_3:31374482-31374501 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | + | chr4_3:31374495-31374514 | Msa0637960:intron | 20.0% |
| !! | AAATGCTAAAATTGTAAAGT+CGG | - | chr4_3:31374553-31374572 | None:intergenic | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | - | chr4_3:31374612-31374631 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | - | chr4_3:31374805-31374824 | None:intergenic | 20.0% |
| !!! | ATGAGAAGGTTTTATTTTTA+TGG | - | chr4_3:31374817-31374836 | None:intergenic | 20.0% |
| !!! | TTTTCGTTTTTTCATTTCAT+TGG | - | chr4_3:31375069-31375088 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | + | chr4_3:31375093-31375112 | Msa0637960:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | + | chr4_3:31375137-31375156 | Msa0637960:intron | 20.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | - | chr4_3:31373929-31373948 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | - | chr4_3:31374235-31374254 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | - | chr4_3:31374389-31374408 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | + | chr4_3:31374498-31374517 | Msa0637960:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | - | chr4_3:31374654-31374673 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | + | chr4_3:31374656-31374675 | Msa0637960:intron | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | - | chr4_3:31374924-31374943 | None:intergenic | 25.0% |
| !!! | CTAACCAATGTATGATTTTT+TGG | + | chr4_3:31374992-31375011 | Msa0637960:intron | 25.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | - | chr4_3:31373929-31373948 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | - | chr4_3:31374235-31374254 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | - | chr4_3:31374389-31374408 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | + | chr4_3:31374498-31374517 | Msa0637960:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | - | chr4_3:31374654-31374673 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | + | chr4_3:31374656-31374675 | Msa0637960:intron | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | - | chr4_3:31374924-31374943 | None:intergenic | 25.0% |
| !!! | CTAACCAATGTATGATTTTT+TGG | + | chr4_3:31374992-31375011 | Msa0637960:intron | 25.0% |
| TACATAAATGCTATGAAGCA+TGG | + | chr4_3:31373996-31374015 | Msa0637960:intron | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr4_3:31374085-31374104 | None:intergenic | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | + | chr4_3:31374254-31374273 | Msa0637960:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | + | chr4_3:31374292-31374311 | Msa0637960:CDS | 30.0% | |
| ! | TGTAACTGTCTATGGATTTT+TGG | + | chr4_3:31374300-31374319 | Msa0637960:CDS | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | - | chr4_3:31374400-31374419 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAAAATGGAGGTGT+TGG | + | chr4_3:31374504-31374523 | Msa0637960:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | + | chr4_3:31374567-31374586 | Msa0637960:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | - | chr4_3:31374650-31374669 | None:intergenic | 30.0% | |
| TCAGCCAAAAAATCATACAT+TGG | - | chr4_3:31374999-31375018 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | - | chr4_3:31375270-31375289 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | - | chr4_3:31375271-31375290 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | + | chr4_3:31375270-31375289 | Msa0637960:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | - | chr4_3:31375371-31375390 | None:intergenic | 30.0% |
| TACATAAATGCTATGAAGCA+TGG | + | chr4_3:31373996-31374015 | Msa0637960:intron | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | - | chr4_3:31374085-31374104 | None:intergenic | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | + | chr4_3:31374254-31374273 | Msa0637960:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | + | chr4_3:31374292-31374311 | Msa0637960:CDS | 30.0% | |
| ! | TGTAACTGTCTATGGATTTT+TGG | + | chr4_3:31374300-31374319 | Msa0637960:CDS | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | - | chr4_3:31374400-31374419 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAAAATGGAGGTGT+TGG | + | chr4_3:31374504-31374523 | Msa0637960:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | + | chr4_3:31374567-31374586 | Msa0637960:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | - | chr4_3:31374650-31374669 | None:intergenic | 30.0% | |
| TCAGCCAAAAAATCATACAT+TGG | - | chr4_3:31374999-31375018 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | - | chr4_3:31375270-31375289 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | - | chr4_3:31375271-31375290 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | + | chr4_3:31375270-31375289 | Msa0637960:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | - | chr4_3:31375371-31375390 | None:intergenic | 30.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | - | chr4_3:31373900-31373919 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | - | chr4_3:31373959-31373978 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | - | chr4_3:31374267-31374286 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | - | chr4_3:31374371-31374390 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | - | chr4_3:31374799-31374818 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | + | chr4_3:31374928-31374947 | Msa0637960:intron | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | - | chr4_3:31374983-31375002 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | - | chr4_3:31374984-31375003 | None:intergenic | 35.0% |
| AACACGTCATGCAATAAACT+TGG | - | chr4_3:31375031-31375050 | None:intergenic | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | - | chr4_3:31375372-31375391 | None:intergenic | 35.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | - | chr4_3:31373900-31373919 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | - | chr4_3:31373959-31373978 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | - | chr4_3:31374267-31374286 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | - | chr4_3:31374371-31374390 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | - | chr4_3:31374799-31374818 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | + | chr4_3:31374928-31374947 | Msa0637960:intron | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | - | chr4_3:31374983-31375002 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | - | chr4_3:31374984-31375003 | None:intergenic | 35.0% |
| AACACGTCATGCAATAAACT+TGG | - | chr4_3:31375031-31375050 | None:intergenic | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | - | chr4_3:31375372-31375391 | None:intergenic | 35.0% |
| GAATCTGCCACCTATTGTTA+AGG | + | chr4_3:31373824-31373843 | Msa0637960:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | - | chr4_3:31373834-31373853 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | + | chr4_3:31373831-31373850 | Msa0637960:intron | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | - | chr4_3:31373837-31373856 | None:intergenic | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | - | chr4_3:31374176-31374195 | None:intergenic | 40.0% | |
| TAAAGTCGGACGTTATGATC+GGG | - | chr4_3:31374539-31374558 | None:intergenic | 40.0% | |
| GTAAAGTCGGACGTTATGAT+CGG | - | chr4_3:31374540-31374559 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | + | chr4_3:31375204-31375223 | Msa0637960:CDS | 40.0% | |
| ATGGAAACAATTATGCTGCC+TGG | + | chr4_3:31375223-31375242 | Msa0637960:CDS | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | - | chr4_3:31375252-31375271 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTCAT+TGG | + | chr4_3:31375294-31375313 | Msa0637960:CDS | 40.0% |
| GAATCTGCCACCTATTGTTA+AGG | + | chr4_3:31373824-31373843 | Msa0637960:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | - | chr4_3:31373834-31373853 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | + | chr4_3:31373831-31373850 | Msa0637960:intron | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | - | chr4_3:31373837-31373856 | None:intergenic | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | - | chr4_3:31374176-31374195 | None:intergenic | 40.0% | |
| TAAAGTCGGACGTTATGATC+GGG | - | chr4_3:31374539-31374558 | None:intergenic | 40.0% | |
| GTAAAGTCGGACGTTATGAT+CGG | - | chr4_3:31374540-31374559 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | + | chr4_3:31375204-31375223 | Msa0637960:CDS | 40.0% | |
| ATGGAAACAATTATGCTGCC+TGG | + | chr4_3:31375223-31375242 | Msa0637960:CDS | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | - | chr4_3:31375252-31375271 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTCAT+TGG | + | chr4_3:31375294-31375313 | Msa0637960:CDS | 40.0% |
| ! | GTGGCAGATTCTACTAGTCT+TGG | - | chr4_3:31373815-31373834 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | + | chr4_3:31373840-31373859 | Msa0637960:intron | 45.0% |
| CATGACAACAACTGCTGACA+AGG | - | chr4_3:31373869-31373888 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | + | chr4_3:31373867-31373886 | Msa0637960:intron | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | - | chr4_3:31373955-31373974 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | + | chr4_3:31374007-31374026 | Msa0637960:intron | 45.0% | |
| !! | TACAAGTGTCGGTGTCGTAT+CGG | - | chr4_3:31374074-31374093 | None:intergenic | 45.0% |
| ATGAAGCGAGGATACAGACA+CGG | - | chr4_3:31374164-31374183 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | - | chr4_3:31374327-31374346 | None:intergenic | 45.0% | |
| AAAGTCGGACGTTATGATCG+GGG | - | chr4_3:31374538-31374557 | None:intergenic | 45.0% | |
| AGCGTGTTTGAGAGATGAGA+AGG | - | chr4_3:31374831-31374850 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | + | chr4_3:31374944-31374963 | Msa0637960:intron | 45.0% | |
| ! | AGCTTTGGCTATAGCTCAAG+TGG | + | chr4_3:31375194-31375213 | Msa0637960:CDS | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | - | chr4_3:31375352-31375371 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | - | chr4_3:31375365-31375384 | None:intergenic | 45.0% | |
| ! | GTGGCAGATTCTACTAGTCT+TGG | - | chr4_3:31373815-31373834 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | + | chr4_3:31373840-31373859 | Msa0637960:intron | 45.0% |
| CATGACAACAACTGCTGACA+AGG | - | chr4_3:31373869-31373888 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | + | chr4_3:31373867-31373886 | Msa0637960:intron | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | - | chr4_3:31373955-31373974 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | + | chr4_3:31374007-31374026 | Msa0637960:intron | 45.0% | |
| !! | TACAAGTGTCGGTGTCGTAT+CGG | - | chr4_3:31374074-31374093 | None:intergenic | 45.0% |
| ATGAAGCGAGGATACAGACA+CGG | - | chr4_3:31374164-31374183 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | - | chr4_3:31374327-31374346 | None:intergenic | 45.0% | |
| AAAGTCGGACGTTATGATCG+GGG | - | chr4_3:31374538-31374557 | None:intergenic | 45.0% | |
| AGCGTGTTTGAGAGATGAGA+AGG | - | chr4_3:31374831-31374850 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | + | chr4_3:31374944-31374963 | Msa0637960:intron | 45.0% | |
| ! | AGCTTTGGCTATAGCTCAAG+TGG | + | chr4_3:31375194-31375213 | Msa0637960:CDS | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | - | chr4_3:31375352-31375371 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | - | chr4_3:31375365-31375384 | None:intergenic | 45.0% | |
| !! | AATAATTTAAATAAAACAAA+TGG | - | chr4_3:31373977-31373996 | None:intergenic | 5.0% |
| !! | AATAATTTAAATAAAACAAA+TGG | - | chr4_3:31373977-31373996 | None:intergenic | 5.0% |
| GACAACAACTGCTGACAAGG+TGG | - | chr4_3:31373866-31373885 | None:intergenic | 50.0% | |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | + | chr4_3:31374332-31374351 | Msa0637960:CDS | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | + | chr4_3:31374357-31374376 | Msa0637960:CDS | 50.0% | |
| CTCAAGCATCTCTGCAGCTT+TGG | + | chr4_3:31375179-31375198 | Msa0637960:CDS | 50.0% | |
| TGAACCACAAATCGGTAGCC+AGG | - | chr4_3:31375244-31375263 | None:intergenic | 50.0% | |
| GACAACAACTGCTGACAAGG+TGG | - | chr4_3:31373866-31373885 | None:intergenic | 50.0% | |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | + | chr4_3:31374332-31374351 | Msa0637960:CDS | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | + | chr4_3:31374357-31374376 | Msa0637960:CDS | 50.0% | |
| CTCAAGCATCTCTGCAGCTT+TGG | + | chr4_3:31375179-31375198 | Msa0637960:CDS | 50.0% | |
| TGAACCACAAATCGGTAGCC+AGG | - | chr4_3:31375244-31375263 | None:intergenic | 50.0% | |
| GCATGGACACTCCTCGGATT+AGG | + | chr4_3:31374013-31374032 | Msa0637960:intron | 55.0% | |
| !! | TGTCGGTGTCGTATCGGTGT+CGG | - | chr4_3:31374068-31374087 | None:intergenic | 55.0% |
| GTCAGTGTCCATGTCGTGTC+TGG | + | chr4_3:31374135-31374154 | Msa0637960:intron | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | + | chr4_3:31374342-31374361 | Msa0637960:CDS | 55.0% |
| GCATGGACACTCCTCGGATT+AGG | + | chr4_3:31374013-31374032 | Msa0637960:intron | 55.0% | |
| !! | TGTCGGTGTCGTATCGGTGT+CGG | - | chr4_3:31374068-31374087 | None:intergenic | 55.0% |
| GTCAGTGTCCATGTCGTGTC+TGG | + | chr4_3:31374135-31374154 | Msa0637960:intron | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | + | chr4_3:31374342-31374361 | Msa0637960:CDS | 55.0% |
| TGCTGACAAGGTGGCCGAGA+AGG | - | chr4_3:31373857-31373876 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_3:31374023-31374042 | Msa0637960:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_3:31374029-31374048 | Msa0637960:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | - | chr4_3:31374045-31374064 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+TGG | - | chr4_3:31374146-31374165 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | - | chr4_3:31374337-31374356 | None:intergenic | 60.0% | |
| !! | GCTGCCTGGCTACCGATTTG+TGG | + | chr4_3:31375237-31375256 | Msa0637960:CDS | 60.0% |
| TGCTGACAAGGTGGCCGAGA+AGG | - | chr4_3:31373857-31373876 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | + | chr4_3:31374023-31374042 | Msa0637960:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | + | chr4_3:31374029-31374048 | Msa0637960:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | - | chr4_3:31374045-31374064 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+TGG | - | chr4_3:31374146-31374165 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | - | chr4_3:31374337-31374356 | None:intergenic | 60.0% | |
| !! | GCTGCCTGGCTACCGATTTG+TGG | + | chr4_3:31375237-31375256 | Msa0637960:CDS | 60.0% |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_3:31374027-31374046 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr4_3:31374044-31374063 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | + | chr4_3:31374351-31374370 | Msa0637960:CDS | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | - | chr4_3:31374027-31374046 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | - | chr4_3:31374044-31374063 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | + | chr4_3:31374351-31374370 | Msa0637960:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 31373808 | 31375392 | 31373808 | ID=Msa0637960;Name=Msa0637960 |
| chr4_3 | mRNA | 31373808 | 31375392 | 31373808 | ID=Msa0637960-mRNA-1;Parent=Msa0637960;Name=Msa0637960-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0|0|1|1|1|3|0|124 |
| chr4_3 | exon | 31373808 | 31373845 | 31373808 | ID=Msa0637960-mRNA-1:exon:7349;Parent=Msa0637960-mRNA-1 |
| chr4_3 | exon | 31374276 | 31374378 | 31374276 | ID=Msa0637960-mRNA-1:exon:7350;Parent=Msa0637960-mRNA-1 |
| chr4_3 | exon | 31375159 | 31375392 | 31375159 | ID=Msa0637960-mRNA-1:exon:7351;Parent=Msa0637960-mRNA-1 |
| chr4_3 | CDS | 31373808 | 31373845 | 31373808 | ID=Msa0637960-mRNA-1:cds;Parent=Msa0637960-mRNA-1 |
| chr4_3 | CDS | 31374276 | 31374378 | 31374276 | ID=Msa0637960-mRNA-1:cds;Parent=Msa0637960-mRNA-1 |
| chr4_3 | CDS | 31375159 | 31375392 | 31375159 | ID=Msa0637960-mRNA-1:cds;Parent=Msa0637960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
