Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677130 | XP_013443594.1 | 98.160 | 163 | 3 | 0 | 1 | 163 | 1 | 163 | 7.78e-110 | 319 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677130 | sp|B9RW00|CSPL6_RICCO | 66.871 | 163 | 54 | 0 | 1 | 163 | 1 | 163 | 1.05e-77 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677130 | A0A072TJ77 | 98.160 | 163 | 3 | 0 | 1 | 163 | 1 | 163 | 3.72e-110 | 319 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0024650 | Msa0677130 | 0.805044 | 1.614096e-49 | -8.615850e-47 |
| Msa0025560 | Msa0677130 | 0.823055 | 1.702163e-53 | -8.615850e-47 |
| Msa0025570 | Msa0677130 | 0.813602 | 2.355177e-51 | -8.615850e-47 |
| Msa0028690 | Msa0677130 | 0.819178 | 1.330786e-52 | -8.615850e-47 |
| Msa0060410 | Msa0677130 | 0.805703 | 1.174618e-49 | -8.615850e-47 |
| Msa0073110 | Msa0677130 | 0.814869 | 1.236609e-51 | -8.615850e-47 |
| Msa0637960 | Msa0677130 | 0.831400 | 1.705544e-55 | -8.615850e-47 |
| Msa0637980 | Msa0677130 | 0.822344 | 2.491476e-53 | -8.615850e-47 |
| Msa0647300 | Msa0677130 | 0.808622 | 2.828757e-50 | -8.615850e-47 |
| Msa0658150 | Msa0677130 | 0.803960 | 2.716479e-49 | -8.615850e-47 |
| Msa0677130 | Msa0686830 | 0.810600 | 1.063590e-50 | -8.615850e-47 |
| Msa0677130 | Msa0703000 | 0.803933 | 2.751886e-49 | -8.615850e-47 |
| Msa0677130 | Msa0709790 | 0.829505 | 4.958422e-55 | -8.615850e-47 |
| Msa0677130 | Msa0730890 | 0.809276 | 2.049303e-50 | -8.615850e-47 |
| Msa0677130 | Msa0773030 | 0.834088 | 3.669432e-56 | -8.615850e-47 |
| Msa0677130 | Msa0783580 | 0.800063 | 1.717971e-48 | -8.615850e-47 |
| Msa0677130 | Msa0792410 | 0.801202 | 1.006535e-48 | -8.615850e-47 |
| Msa0677130 | Msa0794100 | 0.813486 | 2.497551e-51 | -8.615850e-47 |
| Msa0677130 | Msa0812720 | 0.820111 | 8.149678e-53 | -8.615850e-47 |
| Msa0677130 | Msa0831310 | 0.819697 | 1.013573e-52 | -8.615850e-47 |
| Msa0677130 | Msa0831320 | 0.806538 | 7.834740e-50 | -8.615850e-47 |
| Msa0677130 | Msa0851760 | 0.800723 | 1.260465e-48 | -8.615850e-47 |
| Msa0677130 | Msa0853080 | 0.809313 | 2.012607e-50 | -8.615850e-47 |
| Msa0677130 | Msa1006030 | 0.800016 | 1.756181e-48 | -8.615850e-47 |
| Msa0677130 | Msa1029860 | 0.802664 | 5.040254e-49 | -8.615850e-47 |
| Msa0677130 | Msa1035880 | 0.818987 | 1.471414e-52 | -8.615850e-47 |
| Msa0677130 | Msa1062290 | 0.816547 | 5.228175e-52 | -8.615850e-47 |
| Msa0677130 | Msa1068730 | 0.806743 | 7.091832e-50 | -8.615850e-47 |
| Msa0677130 | Msa1087200 | 0.805901 | 1.067387e-49 | -8.615850e-47 |
| Msa0677130 | Msa1087210 | 0.823777 | 1.154004e-53 | -8.615850e-47 |
| Msa0677130 | Msa1155610 | 0.802806 | 4.710124e-49 | -8.615850e-47 |
| Msa0677130 | Msa1163300 | 0.820540 | 6.498658e-53 | -8.615850e-47 |
| Msa0677130 | Msa1211940 | 0.832605 | 8.591164e-56 | -8.615850e-47 |
| Msa0677130 | Msa1212080 | 0.824510 | 7.760972e-54 | -8.615850e-47 |
| Msa0677130 | Msa1223960 | 0.820627 | 6.207353e-53 | -8.615850e-47 |
| Msa0677130 | Msa1223990 | 0.804344 | 2.259296e-49 | -8.615850e-47 |
| Msa0677130 | Msa1241960 | 0.807561 | 4.758703e-50 | -8.615850e-47 |
| Msa0677130 | Msa1263110 | 0.806609 | 7.571016e-50 | -8.615850e-47 |
| Msa0677130 | Msa1269200 | 0.800279 | 1.552977e-48 | -8.615850e-47 |
| Msa0677130 | Msa1269500 | 0.800044 | 1.733054e-48 | -8.615850e-47 |
| Msa0677130 | Msa1273320 | 0.824668 | 7.126014e-54 | -8.615850e-47 |
| Msa0677130 | Msa1281780 | 0.810297 | 1.236407e-50 | -8.615850e-47 |
| Msa0677130 | Msa1322380 | 0.805651 | 1.204190e-49 | -8.615850e-47 |
| Msa0677130 | Msa1334700 | 0.818551 | 1.848135e-52 | -8.615850e-47 |
| Msa0677130 | Msa1344450 | 0.833528 | 5.065472e-56 | -8.615850e-47 |
| Msa0677130 | Msa1361980 | 0.815420 | 9.331757e-52 | -8.615850e-47 |
| Msa0677130 | Msa1364690 | 0.806765 | 7.016093e-50 | -8.615850e-47 |
| Msa0677130 | Msa1376880 | 0.833308 | 5.747637e-56 | -8.615850e-47 |
| Msa0677130 | Msa1384130 | 0.852639 | 4.045582e-61 | -8.615850e-47 |
| Msa0677130 | Msa1386830 | 0.807150 | 5.816888e-50 | -8.615850e-47 |
| Msa0677130 | Msa1395080 | 0.804202 | 2.419002e-49 | -8.615850e-47 |
| Msa0677130 | Msa1407810 | 0.819992 | 8.680169e-53 | -8.615850e-47 |
| Msa0677130 | Msa1413450 | 0.800997 | 1.108078e-48 | -8.615850e-47 |
| Msa0677130 | Msa1433360 | 0.812763 | 3.598780e-51 | -8.615850e-47 |
| Msa0677130 | Msa1437590 | 0.806881 | 6.631983e-50 | -8.615850e-47 |
| Msa0677130 | Msa1437780 | 0.819559 | 1.089907e-52 | -8.615850e-47 |
| Msa0677130 | Msa1462610 | 0.800308 | 1.531882e-48 | -8.615850e-47 |
| Msa0677130 | Msa1464140 | 0.822421 | 2.390843e-53 | -8.615850e-47 |
| Msa0121300 | Msa0677130 | 0.808279 | 3.348897e-50 | -8.615850e-47 |
| Msa0150000 | Msa0677130 | 0.812776 | 3.575906e-51 | -8.615850e-47 |
| Msa0163690 | Msa0677130 | 0.802671 | 5.022807e-49 | -8.615850e-47 |
| Msa0166190 | Msa0677130 | 0.813884 | 2.041944e-51 | -8.615850e-47 |
| Msa0168750 | Msa0677130 | 0.809685 | 1.674601e-50 | -8.615850e-47 |
| Msa0189990 | Msa0677130 | 0.823226 | 1.552239e-53 | -8.615850e-47 |
| Msa0418230 | Msa0677130 | 0.856869 | 2.402445e-62 | -8.615850e-47 |
| Msa0434910 | Msa0677130 | 0.814694 | 1.352054e-51 | -8.615850e-47 |
| Msa0459930 | Msa0677130 | 0.811853 | 5.686036e-51 | -8.615850e-47 |
| Msa0464620 | Msa0677130 | 0.854908 | 8.995483e-62 | -8.615850e-47 |
| Msa0247780 | Msa0677130 | 0.842460 | 2.552039e-58 | -8.615850e-47 |
| Msa0318490 | Msa0677130 | 0.804604 | 1.994991e-49 | -8.615850e-47 |
| Msa0325260 | Msa0677130 | 0.842705 | 2.196093e-58 | -8.615850e-47 |
| Msa0510050 | Msa0677130 | 0.830881 | 2.287215e-55 | -8.615850e-47 |
| Msa0524710 | Msa0677130 | 0.805065 | 1.598216e-49 | -8.615850e-47 |
| Msa0549900 | Msa0677130 | 0.801219 | 9.983297e-49 | -8.615850e-47 |
| Msa0567330 | Msa0677130 | 0.811014 | 8.652686e-51 | -8.615850e-47 |
| Msa0567570 | Msa0677130 | 0.821078 | 4.886974e-53 | -8.615850e-47 |
| Msa0576320 | Msa0677130 | 0.808267 | 3.367591e-50 | -8.615850e-47 |
| Msa0598310 | Msa0677130 | 0.811768 | 5.936283e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677130 | MtrunA17_Chr4g0021111 | 98.160 | 163 | 3 | 0 | 1 | 163 | 1 | 163 | 7.16e-114 | 319 |
| Msa0677130 | MtrunA17_Chr7g0217691 | 32.704 | 159 | 98 | 3 | 1 | 150 | 21 | 179 | 8.74e-21 | 84.0 |
| Msa0677130 | MtrunA17_Chr5g0417761 | 36.601 | 153 | 88 | 2 | 7 | 150 | 27 | 179 | 3.31e-20 | 82.8 |
| Msa0677130 | MtrunA17_Chr4g0042551 | 37.736 | 159 | 90 | 3 | 1 | 150 | 52 | 210 | 3.94e-19 | 80.5 |
| Msa0677130 | MtrunA17_Chr8g0381001 | 34.568 | 162 | 90 | 3 | 10 | 155 | 28 | 189 | 1.79e-18 | 78.2 |
| Msa0677130 | MtrunA17_Chr2g0303151 | 33.858 | 127 | 77 | 2 | 38 | 157 | 66 | 192 | 1.22e-17 | 76.3 |
| Msa0677130 | MtrunA17_Chr7g0268681 | 28.931 | 159 | 103 | 3 | 3 | 151 | 24 | 182 | 2.77e-16 | 72.4 |
| Msa0677130 | MtrunA17_Chr7g0251531 | 32.000 | 125 | 77 | 1 | 11 | 127 | 33 | 157 | 4.79e-16 | 71.6 |
| Msa0677130 | MtrunA17_Chr1g0178161 | 36.364 | 143 | 78 | 4 | 7 | 138 | 37 | 177 | 8.73e-15 | 68.6 |
| Msa0677130 | MtrunA17_Chr3g0109681 | 29.730 | 148 | 94 | 4 | 6 | 148 | 43 | 185 | 9.41e-15 | 68.9 |
| Msa0677130 | MtrunA17_Chr2g0290281 | 30.464 | 151 | 89 | 3 | 1 | 138 | 4 | 151 | 4.36e-13 | 63.9 |
| Msa0677130 | MtrunA17_Chr1g0178181 | 37.762 | 143 | 76 | 4 | 7 | 138 | 36 | 176 | 7.32e-13 | 63.5 |
| Msa0677130 | MtrunA17_Chr2g0286341 | 31.410 | 156 | 92 | 2 | 8 | 148 | 23 | 178 | 1.01e-11 | 60.5 |
| Msa0677130 | MtrunA17_Chr4g0066711 | 32.258 | 155 | 93 | 4 | 10 | 153 | 30 | 183 | 1.12e-11 | 60.1 |
| Msa0677130 | MtrunA17_Chr4g0066721 | 27.586 | 145 | 89 | 3 | 8 | 136 | 33 | 177 | 1.12e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0677130 | AT1G03700.1 | 59.375 | 160 | 65 | 0 | 4 | 163 | 5 | 164 | 7.74e-69 | 206 |
| Msa0677130 | AT4G03540.1 | 61.250 | 160 | 62 | 0 | 4 | 163 | 5 | 164 | 4.19e-60 | 184 |
| Msa0677130 | AT5G44550.1 | 36.782 | 174 | 92 | 4 | 2 | 157 | 10 | 183 | 4.38e-25 | 95.9 |
| Msa0677130 | AT5G15290.1 | 35.616 | 146 | 85 | 2 | 1 | 137 | 21 | 166 | 3.17e-24 | 93.6 |
| Msa0677130 | AT1G14160.1 | 32.450 | 151 | 89 | 4 | 11 | 150 | 54 | 202 | 9.75e-18 | 77.0 |
| Msa0677130 | AT4G15610.1 | 33.108 | 148 | 84 | 3 | 3 | 136 | 24 | 170 | 1.86e-17 | 75.9 |
| Msa0677130 | AT2G36100.1 | 37.063 | 143 | 77 | 4 | 7 | 138 | 47 | 187 | 1.44e-16 | 73.9 |
| Msa0677130 | AT2G27370.1 | 38.168 | 131 | 68 | 4 | 31 | 150 | 85 | 213 | 2.57e-16 | 73.6 |
| Msa0677130 | AT4G25040.1 | 37.410 | 139 | 83 | 2 | 12 | 146 | 21 | 159 | 9.49e-16 | 70.9 |
| Msa0677130 | AT5G06200.1 | 37.778 | 135 | 71 | 4 | 27 | 150 | 63 | 195 | 1.07e-12 | 63.5 |
| Msa0677130 | AT3G06390.1 | 31.884 | 138 | 80 | 4 | 6 | 129 | 35 | 172 | 2.71e-11 | 59.7 |
| Msa0677130 | AT1G17200.1 | 27.160 | 162 | 103 | 5 | 6 | 157 | 31 | 187 | 4.23e-11 | 59.3 |
| Msa0677130 | AT4G20390.1 | 33.125 | 160 | 91 | 3 | 12 | 155 | 22 | 181 | 4.88e-11 | 58.9 |
Find 31 sgRNAs with CRISPR-Local
Find 182 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTATTGTTAAGGTTCT+TGG | 0.122572 | 4_4:-29512638 | Msa0677130:CDS |
| TGTCATGTGATTGCAAAATT+TGG | 0.163683 | 4_4:+29511166 | None:intergenic |
| AACTCTATTGTAACTGTCTA+TGG | 0.255815 | 4_4:-29512177 | Msa0677130:CDS |
| ACTTGTGGTCGCCATGGATA+TGG | 0.315968 | 4_4:-29512112 | Msa0677130:intron |
| GCTTTAGTCGCTAGTTTCAT+TGG | 0.393377 | 4_4:-29511140 | Msa0677130:CDS |
| CTCAAGCATCTCTGCAGCTT+TGG | 0.400682 | 4_4:-29511255 | Msa0677130:CDS |
| GTTAAGGTTCTTGGCCTTCT+CGG | 0.405136 | 4_4:-29512629 | Msa0677130:CDS |
| CTTGTCAGCAGTTGTTGTCA+TGG | 0.429083 | 4_4:-29512602 | Msa0677130:CDS |
| GTCATGTGATTGCAAAATTT+GGG | 0.430792 | 4_4:+29511167 | None:intergenic |
| GAATCTGCCACCTATTGTTA+AGG | 0.432387 | 4_4:-29512645 | Msa0677130:CDS |
| CGCCAGAGCAAGCTTTCTGC+AGG | 0.458432 | 4_4:+29512135 | None:intergenic |
| AGGCCAAGAACCTTAACAAT+AGG | 0.459316 | 4_4:+29512635 | None:intergenic |
| GCTGCTTGGCTACCGATTTG+TGG | 0.463642 | 4_4:-29511197 | Msa0677130:CDS |
| TTCCTGCAGAAAGCTTGCTC+TGG | 0.469885 | 4_4:-29512137 | Msa0677130:CDS |
| TGCTGACAAGGTGGCCGAGA+AGG | 0.484142 | 4_4:+29512615 | None:intergenic |
| ATGGAAACAATTATGCTGCT+TGG | 0.504739 | 4_4:-29511211 | Msa0677130:CDS |
| ATAGCTCAAGTGGCAAAGAA+TGG | 0.508607 | 4_4:-29511230 | Msa0677130:CDS |
| TTGGGAACTGAACCACAAAT+CGG | 0.511633 | 4_4:+29511185 | None:intergenic |
| CATGACAACAACTGCTGACA+AGG | 0.513838 | 4_4:+29512603 | None:intergenic |
| AGGGTCAAGGACAGTATGAA+TGG | 0.516263 | 4_4:+29511085 | None:intergenic |
| AAGCTTGCTCTGGCGACTTG+TGG | 0.523109 | 4_4:-29512127 | Msa0677130:CDS |
| GAGTTCACTTACTTCAAGGC+AGG | 0.535265 | 4_4:+29512517 | None:intergenic |
| TTCTCAAAAGGAGAGGGTCA+AGG | 0.544463 | 4_4:+29511072 | None:intergenic |
| CTGGCGACTTGTGGTCGCCA+TGG | 0.548545 | 4_4:-29512118 | Msa0677130:CDS |
| GTGGCAGATTCTACTAGTCT+TGG | 0.560428 | 4_4:+29512657 | None:intergenic |
| GATTCTACTAGTCTTGGCCA+TGG | 0.580820 | 4_4:+29512663 | None:intergenic |
| AGCTTTGGCTATAGCTCAAG+TGG | 0.581117 | 4_4:-29511240 | Msa0677130:CDS |
| TTAGGACATTACCATATCCA+TGG | 0.585943 | 4_4:+29512101 | None:intergenic |
| AGCTTTCTGCAGGAAGAAAG+AGG | 0.586262 | 4_4:+29512145 | None:intergenic |
| CCAAGAACCTTAACAATAGG+TGG | 0.592009 | 4_4:+29512638 | None:intergenic |
| GACAACAACTGCTGACAAGG+TGG | 0.675764 | 4_4:+29512606 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGCTAAATTATTA+TGG | - | chr4_4:29512375-29512394 | Msa0677130:intron | 10.0% |
| !! | AAAAAAATGCTAAATTATTA+TGG | - | chr4_4:29512375-29512394 | Msa0677130:intron | 10.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | + | chr4_4:29512067-29512086 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | + | chr4_4:29512137-29512156 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | + | chr4_4:29512138-29512157 | None:intergenic | 15.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | + | chr4_4:29512067-29512086 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | + | chr4_4:29512137-29512156 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | + | chr4_4:29512138-29512157 | None:intergenic | 15.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | + | chr4_4:29511738-29511757 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | - | chr4_4:29511751-29511770 | Msa0677130:intron | 20.0% |
| !! | AAATGCTAAAATTGTAAAGT+CGG | + | chr4_4:29511809-29511828 | None:intergenic | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | + | chr4_4:29511868-29511887 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | + | chr4_4:29512063-29512082 | None:intergenic | 20.0% |
| !!! | CTAACCAATGTATTATTTTT+TGG | - | chr4_4:29512250-29512269 | Msa0677130:intron | 20.0% |
| !!! | TTTTCGTTTTTTCATTTCAT+TGG | + | chr4_4:29512329-29512348 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | - | chr4_4:29512381-29512400 | Msa0677130:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | - | chr4_4:29512428-29512447 | Msa0677130:intron | 20.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | + | chr4_4:29511738-29511757 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | - | chr4_4:29511751-29511770 | Msa0677130:intron | 20.0% |
| !! | AAATGCTAAAATTGTAAAGT+CGG | + | chr4_4:29511809-29511828 | None:intergenic | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | + | chr4_4:29511868-29511887 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | + | chr4_4:29512063-29512082 | None:intergenic | 20.0% |
| !!! | CTAACCAATGTATTATTTTT+TGG | - | chr4_4:29512250-29512269 | Msa0677130:intron | 20.0% |
| !!! | TTTTCGTTTTTTCATTTCAT+TGG | + | chr4_4:29512329-29512348 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | - | chr4_4:29512381-29512400 | Msa0677130:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | - | chr4_4:29512428-29512447 | Msa0677130:intron | 20.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | + | chr4_4:29511185-29511204 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | + | chr4_4:29511491-29511510 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | + | chr4_4:29511645-29511664 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | - | chr4_4:29511754-29511773 | Msa0677130:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | + | chr4_4:29511910-29511929 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | - | chr4_4:29511912-29511931 | Msa0677130:intron | 25.0% |
| !!! | ATGAGGTGGTTTTATTTTTA+TGG | + | chr4_4:29512075-29512094 | None:intergenic | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | + | chr4_4:29512182-29512201 | None:intergenic | 25.0% |
| ! | TCAGCCAAAAAATAATACAT+TGG | + | chr4_4:29512257-29512276 | None:intergenic | 25.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | + | chr4_4:29511185-29511204 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | + | chr4_4:29511491-29511510 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | + | chr4_4:29511645-29511664 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | - | chr4_4:29511754-29511773 | Msa0677130:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | + | chr4_4:29511910-29511929 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | - | chr4_4:29511912-29511931 | Msa0677130:intron | 25.0% |
| !!! | ATGAGGTGGTTTTATTTTTA+TGG | + | chr4_4:29512075-29512094 | None:intergenic | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | + | chr4_4:29512182-29512201 | None:intergenic | 25.0% |
| ! | TCAGCCAAAAAATAATACAT+TGG | + | chr4_4:29512257-29512276 | None:intergenic | 25.0% |
| TACATAAATGCTATGAAGCA+TGG | - | chr4_4:29511252-29511271 | Msa0677130:CDS | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr4_4:29511341-29511360 | None:intergenic | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | - | chr4_4:29511510-29511529 | Msa0677130:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | - | chr4_4:29511548-29511567 | Msa0677130:intron | 30.0% | |
| ! | TGTAACTGTCTATGGATTTT+TGG | - | chr4_4:29511556-29511575 | Msa0677130:intron | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | + | chr4_4:29511656-29511675 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAAAATGGAGGTGT+TGG | - | chr4_4:29511760-29511779 | Msa0677130:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | - | chr4_4:29511823-29511842 | Msa0677130:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | + | chr4_4:29511906-29511925 | None:intergenic | 30.0% | |
| AACACGTCAAACAATAAACT+TGG | + | chr4_4:29512289-29512308 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | + | chr4_4:29512561-29512580 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | + | chr4_4:29512562-29512581 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | - | chr4_4:29512561-29512580 | Msa0677130:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | + | chr4_4:29512662-29512681 | None:intergenic | 30.0% |
| TACATAAATGCTATGAAGCA+TGG | - | chr4_4:29511252-29511271 | Msa0677130:CDS | 30.0% | |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr4_4:29511341-29511360 | None:intergenic | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | - | chr4_4:29511510-29511529 | Msa0677130:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | - | chr4_4:29511548-29511567 | Msa0677130:intron | 30.0% | |
| ! | TGTAACTGTCTATGGATTTT+TGG | - | chr4_4:29511556-29511575 | Msa0677130:intron | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | + | chr4_4:29511656-29511675 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAAAATGGAGGTGT+TGG | - | chr4_4:29511760-29511779 | Msa0677130:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | - | chr4_4:29511823-29511842 | Msa0677130:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | + | chr4_4:29511906-29511925 | None:intergenic | 30.0% | |
| AACACGTCAAACAATAAACT+TGG | + | chr4_4:29512289-29512308 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | + | chr4_4:29512561-29512580 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | + | chr4_4:29512562-29512581 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | - | chr4_4:29512561-29512580 | Msa0677130:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | + | chr4_4:29512662-29512681 | None:intergenic | 30.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | + | chr4_4:29511156-29511175 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | + | chr4_4:29511215-29511234 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | + | chr4_4:29511523-29511542 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | + | chr4_4:29511627-29511646 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | + | chr4_4:29512057-29512076 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | - | chr4_4:29512186-29512205 | Msa0677130:CDS | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | + | chr4_4:29512241-29512260 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | + | chr4_4:29512242-29512261 | None:intergenic | 35.0% |
| ATGGAAACAATTATGCTGCT+TGG | - | chr4_4:29512514-29512533 | Msa0677130:intron | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | + | chr4_4:29512663-29512682 | None:intergenic | 35.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | + | chr4_4:29511156-29511175 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | + | chr4_4:29511215-29511234 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | + | chr4_4:29511523-29511542 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | + | chr4_4:29511627-29511646 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | + | chr4_4:29512057-29512076 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | - | chr4_4:29512186-29512205 | Msa0677130:CDS | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | + | chr4_4:29512241-29512260 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | + | chr4_4:29512242-29512261 | None:intergenic | 35.0% |
| ATGGAAACAATTATGCTGCT+TGG | - | chr4_4:29512514-29512533 | Msa0677130:intron | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | + | chr4_4:29512663-29512682 | None:intergenic | 35.0% |
| GAATCTGCCACCTATTGTTA+AGG | - | chr4_4:29511080-29511099 | Msa0677130:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | + | chr4_4:29511090-29511109 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | - | chr4_4:29511087-29511106 | Msa0677130:CDS | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | + | chr4_4:29511093-29511112 | None:intergenic | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | + | chr4_4:29511432-29511451 | None:intergenic | 40.0% | |
| TAAAGTCGGACGTTATGATC+GGG | + | chr4_4:29511795-29511814 | None:intergenic | 40.0% | |
| GTAAAGTCGGACGTTATGAT+CGG | + | chr4_4:29511796-29511815 | None:intergenic | 40.0% | |
| TTAAGCGTGTTTGAGAGATG+AGG | + | chr4_4:29512092-29512111 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | - | chr4_4:29512495-29512514 | Msa0677130:intron | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | + | chr4_4:29512543-29512562 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTCAT+TGG | - | chr4_4:29512585-29512604 | Msa0677130:CDS | 40.0% |
| GAATCTGCCACCTATTGTTA+AGG | - | chr4_4:29511080-29511099 | Msa0677130:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | + | chr4_4:29511090-29511109 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | - | chr4_4:29511087-29511106 | Msa0677130:CDS | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | + | chr4_4:29511093-29511112 | None:intergenic | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | + | chr4_4:29511432-29511451 | None:intergenic | 40.0% | |
| TAAAGTCGGACGTTATGATC+GGG | + | chr4_4:29511795-29511814 | None:intergenic | 40.0% | |
| GTAAAGTCGGACGTTATGAT+CGG | + | chr4_4:29511796-29511815 | None:intergenic | 40.0% | |
| TTAAGCGTGTTTGAGAGATG+AGG | + | chr4_4:29512092-29512111 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | - | chr4_4:29512495-29512514 | Msa0677130:intron | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | + | chr4_4:29512543-29512562 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTCAT+TGG | - | chr4_4:29512585-29512604 | Msa0677130:CDS | 40.0% |
| ! | GTGGCAGATTCTACTAGTCT+TGG | + | chr4_4:29511071-29511090 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | - | chr4_4:29511096-29511115 | Msa0677130:CDS | 45.0% |
| CATGACAACAACTGCTGACA+AGG | + | chr4_4:29511125-29511144 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | - | chr4_4:29511123-29511142 | Msa0677130:CDS | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | + | chr4_4:29511211-29511230 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | - | chr4_4:29511263-29511282 | Msa0677130:CDS | 45.0% | |
| !! | TACAAGTGTCGGTGTCGTAT+CGG | + | chr4_4:29511330-29511349 | None:intergenic | 45.0% |
| ATGAAGCGAGGATACAGACA+CGG | + | chr4_4:29511420-29511439 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | + | chr4_4:29511583-29511602 | None:intergenic | 45.0% | |
| AAAGTCGGACGTTATGATCG+GGG | + | chr4_4:29511794-29511813 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | - | chr4_4:29512202-29512221 | Msa0677130:intron | 45.0% | |
| ! | AGCTTTGGCTATAGCTCAAG+TGG | - | chr4_4:29512485-29512504 | Msa0677130:intron | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | + | chr4_4:29512643-29512662 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | + | chr4_4:29512656-29512675 | None:intergenic | 45.0% | |
| ! | GTGGCAGATTCTACTAGTCT+TGG | + | chr4_4:29511071-29511090 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | - | chr4_4:29511096-29511115 | Msa0677130:CDS | 45.0% |
| CATGACAACAACTGCTGACA+AGG | + | chr4_4:29511125-29511144 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | - | chr4_4:29511123-29511142 | Msa0677130:CDS | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | + | chr4_4:29511211-29511230 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | - | chr4_4:29511263-29511282 | Msa0677130:CDS | 45.0% | |
| !! | TACAAGTGTCGGTGTCGTAT+CGG | + | chr4_4:29511330-29511349 | None:intergenic | 45.0% |
| ATGAAGCGAGGATACAGACA+CGG | + | chr4_4:29511420-29511439 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | + | chr4_4:29511583-29511602 | None:intergenic | 45.0% | |
| AAAGTCGGACGTTATGATCG+GGG | + | chr4_4:29511794-29511813 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | - | chr4_4:29512202-29512221 | Msa0677130:intron | 45.0% | |
| ! | AGCTTTGGCTATAGCTCAAG+TGG | - | chr4_4:29512485-29512504 | Msa0677130:intron | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | + | chr4_4:29512643-29512662 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | + | chr4_4:29512656-29512675 | None:intergenic | 45.0% | |
| !! | AATAATTTAAATAAAACAAA+TGG | + | chr4_4:29511233-29511252 | None:intergenic | 5.0% |
| !! | AATAATTTAAATAAAACAAA+TGG | + | chr4_4:29511233-29511252 | None:intergenic | 5.0% |
| GACAACAACTGCTGACAAGG+TGG | + | chr4_4:29511122-29511141 | None:intergenic | 50.0% | |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | - | chr4_4:29511588-29511607 | Msa0677130:intron | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | - | chr4_4:29511613-29511632 | Msa0677130:intron | 50.0% | |
| AGCGTGTTTGAGAGATGAGG+TGG | + | chr4_4:29512089-29512108 | None:intergenic | 50.0% | |
| CTCAAGCATCTCTGCAGCTT+TGG | - | chr4_4:29512470-29512489 | Msa0677130:intron | 50.0% | |
| GACAACAACTGCTGACAAGG+TGG | + | chr4_4:29511122-29511141 | None:intergenic | 50.0% | |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | - | chr4_4:29511588-29511607 | Msa0677130:intron | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | - | chr4_4:29511613-29511632 | Msa0677130:intron | 50.0% | |
| AGCGTGTTTGAGAGATGAGG+TGG | + | chr4_4:29512089-29512108 | None:intergenic | 50.0% | |
| CTCAAGCATCTCTGCAGCTT+TGG | - | chr4_4:29512470-29512489 | Msa0677130:intron | 50.0% | |
| GCATGGACACTCCTCGGATT+AGG | - | chr4_4:29511269-29511288 | Msa0677130:CDS | 55.0% | |
| !! | TGTCGGTGTCGTATCGGTGT+CGG | + | chr4_4:29511324-29511343 | None:intergenic | 55.0% |
| GTCAGTGTCCATGTCGTGTC+TGG | - | chr4_4:29511391-29511410 | Msa0677130:intron | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | - | chr4_4:29511598-29511617 | Msa0677130:intron | 55.0% |
| !! | GCTGCTTGGCTACCGATTTG+TGG | - | chr4_4:29512528-29512547 | Msa0677130:intron | 55.0% |
| GCATGGACACTCCTCGGATT+AGG | - | chr4_4:29511269-29511288 | Msa0677130:CDS | 55.0% | |
| !! | TGTCGGTGTCGTATCGGTGT+CGG | + | chr4_4:29511324-29511343 | None:intergenic | 55.0% |
| GTCAGTGTCCATGTCGTGTC+TGG | - | chr4_4:29511391-29511410 | Msa0677130:intron | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | - | chr4_4:29511598-29511617 | Msa0677130:intron | 55.0% |
| !! | GCTGCTTGGCTACCGATTTG+TGG | - | chr4_4:29512528-29512547 | Msa0677130:intron | 55.0% |
| TGCTGACAAGGTGGCCGAGA+AGG | + | chr4_4:29511113-29511132 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr4_4:29511279-29511298 | Msa0677130:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4_4:29511285-29511304 | Msa0677130:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr4_4:29511301-29511320 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+TGG | + | chr4_4:29511402-29511421 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | + | chr4_4:29511593-29511612 | None:intergenic | 60.0% | |
| TGCTGACAAGGTGGCCGAGA+AGG | + | chr4_4:29511113-29511132 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr4_4:29511279-29511298 | Msa0677130:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4_4:29511285-29511304 | Msa0677130:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr4_4:29511301-29511320 | None:intergenic | 60.0% | |
| CACGGACACCAGACACGACA+TGG | + | chr4_4:29511402-29511421 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | + | chr4_4:29511593-29511612 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr4_4:29511283-29511302 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr4_4:29511300-29511319 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | - | chr4_4:29511607-29511626 | Msa0677130:intron | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr4_4:29511283-29511302 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr4_4:29511300-29511319 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | - | chr4_4:29511607-29511626 | Msa0677130:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 29511064 | 29512683 | 29511064 | ID=Msa0677130;Name=Msa0677130 |
| chr4_4 | mRNA | 29511064 | 29512683 | 29511064 | ID=Msa0677130-mRNA-1;Parent=Msa0677130;Name=Msa0677130-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|163 |
| chr4_4 | exon | 29512529 | 29512683 | 29512529 | ID=Msa0677130-mRNA-1:exon:7601;Parent=Msa0677130-mRNA-1 |
| chr4_4 | exon | 29512113 | 29512215 | 29512113 | ID=Msa0677130-mRNA-1:exon:7600;Parent=Msa0677130-mRNA-1 |
| chr4_4 | exon | 29511064 | 29511297 | 29511064 | ID=Msa0677130-mRNA-1:exon:7599;Parent=Msa0677130-mRNA-1 |
| chr4_4 | CDS | 29512529 | 29512683 | 29512529 | ID=Msa0677130-mRNA-1:cds;Parent=Msa0677130-mRNA-1 |
| chr4_4 | CDS | 29512113 | 29512215 | 29512113 | ID=Msa0677130-mRNA-1:cds;Parent=Msa0677130-mRNA-1 |
| chr4_4 | CDS | 29511064 | 29511297 | 29511064 | ID=Msa0677130-mRNA-1:cds;Parent=Msa0677130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
