Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637980 | XP_013443594.1 | 97.546 | 163 | 4 | 0 | 1 | 163 | 1 | 163 | 4.04e-109 | 318 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637980 | sp|B9RW00|CSPL6_RICCO | 66.258 | 163 | 55 | 0 | 1 | 163 | 1 | 163 | 6.70e-77 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0637980 | Msa0677130 | 0.822344 | 2.491476e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637980 | MtrunA17_Chr4g0021111 | 97.546 | 163 | 4 | 0 | 1 | 163 | 1 | 163 | 3.71e-113 | 318 |
| Msa0637980 | MtrunA17_Chr7g0217691 | 32.704 | 159 | 98 | 3 | 1 | 150 | 21 | 179 | 5.83e-21 | 84.7 |
| Msa0637980 | MtrunA17_Chr5g0417761 | 36.601 | 153 | 88 | 2 | 7 | 150 | 27 | 179 | 2.70e-20 | 82.8 |
| Msa0637980 | MtrunA17_Chr4g0042551 | 37.736 | 159 | 90 | 3 | 1 | 150 | 52 | 210 | 2.16e-19 | 81.3 |
| Msa0637980 | MtrunA17_Chr8g0381001 | 35.185 | 162 | 89 | 3 | 10 | 155 | 28 | 189 | 5.04e-19 | 79.7 |
| Msa0637980 | MtrunA17_Chr2g0303151 | 34.646 | 127 | 76 | 2 | 38 | 157 | 66 | 192 | 3.07e-18 | 77.8 |
| Msa0637980 | MtrunA17_Chr7g0251531 | 32.000 | 125 | 77 | 1 | 11 | 127 | 33 | 157 | 1.80e-16 | 72.8 |
| Msa0637980 | MtrunA17_Chr7g0268681 | 28.931 | 159 | 103 | 3 | 3 | 151 | 24 | 182 | 2.32e-16 | 72.8 |
| Msa0637980 | MtrunA17_Chr3g0109681 | 30.405 | 148 | 93 | 4 | 6 | 148 | 43 | 185 | 2.42e-15 | 70.5 |
| Msa0637980 | MtrunA17_Chr1g0178161 | 36.364 | 143 | 78 | 4 | 7 | 138 | 37 | 177 | 2.98e-14 | 67.0 |
| Msa0637980 | MtrunA17_Chr2g0290281 | 31.126 | 151 | 88 | 3 | 1 | 138 | 4 | 151 | 1.07e-13 | 65.5 |
| Msa0637980 | MtrunA17_Chr1g0178181 | 37.762 | 143 | 76 | 4 | 7 | 138 | 36 | 176 | 2.06e-12 | 62.4 |
| Msa0637980 | MtrunA17_Chr4g0066711 | 32.258 | 155 | 93 | 4 | 10 | 153 | 30 | 183 | 5.27e-12 | 60.8 |
| Msa0637980 | MtrunA17_Chr4g0066721 | 29.655 | 145 | 86 | 4 | 8 | 136 | 33 | 177 | 7.07e-12 | 60.8 |
| Msa0637980 | MtrunA17_Chr2g0286341 | 31.410 | 156 | 92 | 2 | 8 | 148 | 23 | 178 | 7.33e-12 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0637980 | AT1G03700.1 | 58.750 | 160 | 66 | 0 | 4 | 163 | 5 | 164 | 5.08e-68 | 204 |
| Msa0637980 | AT4G03540.1 | 60.625 | 160 | 63 | 0 | 4 | 163 | 5 | 164 | 3.10e-59 | 182 |
| Msa0637980 | AT5G44550.1 | 37.356 | 174 | 91 | 4 | 2 | 157 | 10 | 183 | 9.56e-26 | 97.8 |
| Msa0637980 | AT5G15290.1 | 35.616 | 146 | 85 | 2 | 1 | 137 | 21 | 166 | 1.21e-24 | 94.4 |
| Msa0637980 | AT4G15610.1 | 33.108 | 148 | 84 | 3 | 3 | 136 | 24 | 170 | 8.89e-18 | 76.6 |
| Msa0637980 | AT1G14160.1 | 32.450 | 151 | 89 | 4 | 11 | 150 | 54 | 202 | 5.11e-17 | 75.1 |
| Msa0637980 | AT2G36100.1 | 37.063 | 143 | 77 | 4 | 7 | 138 | 47 | 187 | 1.38e-16 | 73.9 |
| Msa0637980 | AT4G25040.1 | 38.129 | 139 | 82 | 2 | 12 | 146 | 21 | 159 | 2.26e-16 | 72.4 |
| Msa0637980 | AT2G27370.1 | 37.209 | 129 | 72 | 2 | 31 | 150 | 85 | 213 | 8.22e-16 | 72.0 |
| Msa0637980 | AT5G06200.1 | 37.778 | 135 | 71 | 4 | 27 | 150 | 63 | 195 | 3.63e-12 | 62.0 |
| Msa0637980 | AT3G06390.1 | 32.609 | 138 | 79 | 4 | 6 | 129 | 35 | 172 | 7.29e-12 | 61.2 |
| Msa0637980 | AT1G17200.1 | 27.778 | 162 | 102 | 5 | 6 | 157 | 31 | 187 | 1.01e-11 | 60.8 |
| Msa0637980 | AT4G20390.1 | 33.750 | 160 | 90 | 3 | 12 | 155 | 22 | 181 | 1.34e-11 | 60.5 |
| Msa0637980 | AT4G16442.1 | 31.081 | 148 | 82 | 4 | 6 | 136 | 9 | 153 | 3.62e-11 | 58.9 |
Find 32 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCACCTATTGTTAAGGTTCT+TGG | 0.122572 | 4_3:-31484667 | Msa0637980:CDS |
| TGTCATGTGATTGCAAAATT+TGG | 0.163683 | 4_3:+31483200 | None:intergenic |
| TGTAACTGTCTATGGATTAT+TGG | 0.250923 | 4_3:-31484198 | Msa0637980:CDS |
| AACTCTATTGTAACTGTCTA+TGG | 0.255815 | 4_3:-31484206 | Msa0637980:CDS |
| ACTTGTGGTCGCCATGGATA+TGG | 0.315968 | 4_3:-31484141 | Msa0637980:intron |
| GCTTTAGTCGCTAGTTTCAT+TGG | 0.393377 | 4_3:-31483174 | Msa0637980:CDS |
| GTTAAGGTTCTTGGCCTTCT+CGG | 0.405136 | 4_3:-31484658 | Msa0637980:CDS |
| CTTGTCAGCAGTTGTTGTCA+TGG | 0.429083 | 4_3:-31484631 | Msa0637980:CDS |
| GTCATGTGATTGCAAAATTT+GGG | 0.430792 | 4_3:+31483201 | None:intergenic |
| GAATCTGCCACCTATTGTTA+AGG | 0.432387 | 4_3:-31484674 | Msa0637980:CDS |
| CGCCAGAGCAAGCTTTCTGC+AGG | 0.458432 | 4_3:+31484164 | None:intergenic |
| AGGCCAAGAACCTTAACAAT+AGG | 0.459316 | 4_3:+31484664 | None:intergenic |
| GCTGCTTGGCTACCGATTTG+TGG | 0.463642 | 4_3:-31483231 | Msa0637980:CDS |
| TTCCTGCAGAAAGCTTGCTC+TGG | 0.469885 | 4_3:-31484166 | Msa0637980:CDS |
| TGCTGACAAGGTGGCCGAGA+AGG | 0.484142 | 4_3:+31484644 | None:intergenic |
| CTCAAGCATCTCTGCAGCAT+TGG | 0.496879 | 4_3:-31483289 | Msa0637980:CDS |
| ATGGAAACAATTATGCTGCT+TGG | 0.504739 | 4_3:-31483245 | Msa0637980:CDS |
| ATAGCTCAAGTGGCAAAGAA+TGG | 0.508607 | 4_3:-31483264 | Msa0637980:CDS |
| TTGGGAACTGAACCACAAAT+CGG | 0.511633 | 4_3:+31483219 | None:intergenic |
| CATGACAACAACTGCTGACA+AGG | 0.513838 | 4_3:+31484632 | None:intergenic |
| AGGGTCAAGGACAGTATGAA+TGG | 0.516263 | 4_3:+31483119 | None:intergenic |
| AAGCTTGCTCTGGCGACTTG+TGG | 0.523109 | 4_3:-31484156 | Msa0637980:CDS |
| GAGTTCACTTACTTCAAGGC+AGG | 0.535265 | 4_3:+31484546 | None:intergenic |
| TTCTCAAAAGGAGAGGGTCA+AGG | 0.544463 | 4_3:+31483106 | None:intergenic |
| CTGGCGACTTGTGGTCGCCA+TGG | 0.548545 | 4_3:-31484147 | Msa0637980:CDS |
| GTGGCAGATTCTACTAGTCT+TGG | 0.560428 | 4_3:+31484686 | None:intergenic |
| GATTCTACTAGTCTTGGCCA+TGG | 0.580820 | 4_3:+31484692 | None:intergenic |
| TTAGGACATTACCATATCCA+TGG | 0.585943 | 4_3:+31484130 | None:intergenic |
| AGCTTTCTGCAGGAAGAAAG+AGG | 0.586262 | 4_3:+31484174 | None:intergenic |
| CCAAGAACCTTAACAATAGG+TGG | 0.592009 | 4_3:+31484667 | None:intergenic |
| AGCATTGGCTATAGCTCAAG+TGG | 0.592259 | 4_3:-31483274 | Msa0637980:CDS |
| GACAACAACTGCTGACAAGG+TGG | 0.675764 | 4_3:+31484635 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAATTTAAATGAAACAAA+TGG | + | chr4_3:31483267-31483286 | None:intergenic | 10.0% |
| !! | AAAAAAATGCTAAATTATTA+TGG | - | chr4_3:31484404-31484423 | Msa0637980:intron | 10.0% |
| !! | AATAATTTAAATGAAACAAA+TGG | + | chr4_3:31483267-31483286 | None:intergenic | 10.0% |
| !! | AAAAAAATGCTAAATTATTA+TGG | - | chr4_3:31484404-31484423 | Msa0637980:intron | 10.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | + | chr4_3:31484097-31484116 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | + | chr4_3:31484167-31484186 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | + | chr4_3:31484168-31484187 | None:intergenic | 15.0% |
| !!! | GTTTTATTTTTATGGATTTA+AGG | + | chr4_3:31484097-31484116 | None:intergenic | 15.0% |
| !!! | ATTTTATATGATCAAACTTA+GGG | + | chr4_3:31484167-31484186 | None:intergenic | 15.0% |
| !!! | TATTTTATATGATCAAACTT+AGG | + | chr4_3:31484168-31484187 | None:intergenic | 15.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | + | chr4_3:31483772-31483791 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | - | chr4_3:31483785-31483804 | Msa0637980:intron | 20.0% |
| !! | AAATGCTAAAATTGTAAAGT+CGG | + | chr4_3:31483843-31483862 | None:intergenic | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | + | chr4_3:31483902-31483921 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | + | chr4_3:31484093-31484112 | None:intergenic | 20.0% |
| !!! | ATGAGAAGGTTTTATTTTTA+TGG | + | chr4_3:31484105-31484124 | None:intergenic | 20.0% |
| !!! | CTAACCAATGTATTATTTTT+TGG | - | chr4_3:31484280-31484299 | Msa0637980:intron | 20.0% |
| !!! | TTTTCGTTTTTTCATTTCAT+TGG | + | chr4_3:31484358-31484377 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | - | chr4_3:31484410-31484429 | Msa0637980:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | - | chr4_3:31484457-31484476 | Msa0637980:intron | 20.0% |
| !! | AAGAACAAATGTTTCAAATT+TGG | + | chr4_3:31483772-31483791 | None:intergenic | 20.0% |
| !!! | TGTTCTTCATGTTTTTAAAA+TGG | - | chr4_3:31483785-31483804 | Msa0637980:intron | 20.0% |
| !! | AAATGCTAAAATTGTAAAGT+CGG | + | chr4_3:31483843-31483862 | None:intergenic | 20.0% |
| !! | CAAACATTATATGACTTAAA+TGG | + | chr4_3:31483902-31483921 | None:intergenic | 20.0% |
| !!! | TATTTTTATGGATTTAAGGT+TGG | + | chr4_3:31484093-31484112 | None:intergenic | 20.0% |
| !!! | ATGAGAAGGTTTTATTTTTA+TGG | + | chr4_3:31484105-31484124 | None:intergenic | 20.0% |
| !!! | CTAACCAATGTATTATTTTT+TGG | - | chr4_3:31484280-31484299 | Msa0637980:intron | 20.0% |
| !!! | TTTTCGTTTTTTCATTTCAT+TGG | + | chr4_3:31484358-31484377 | None:intergenic | 20.0% |
| !! | ATGCTAAATTATTATGGTTA+TGG | - | chr4_3:31484410-31484429 | Msa0637980:intron | 20.0% |
| !!! | TTTAATTGATTTTTATGAGC+AGG | - | chr4_3:31484457-31484476 | Msa0637980:intron | 20.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | + | chr4_3:31483219-31483238 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | + | chr4_3:31483525-31483544 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | + | chr4_3:31483679-31483698 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | - | chr4_3:31483788-31483807 | Msa0637980:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | + | chr4_3:31483944-31483963 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | - | chr4_3:31483946-31483965 | Msa0637980:intron | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | + | chr4_3:31484212-31484231 | None:intergenic | 25.0% |
| ! | TCAGCCAAAAAATAATACAT+TGG | + | chr4_3:31484287-31484306 | None:intergenic | 25.0% |
| !! | GTTAGTATATTTTGCTTCAA+AGG | + | chr4_3:31483219-31483238 | None:intergenic | 25.0% |
| ! | ATCAGTTTAGAGATGAATTA+AGG | + | chr4_3:31483525-31483544 | None:intergenic | 25.0% |
| ! | ATGATAAAGAGGTTAACTTT+AGG | + | chr4_3:31483679-31483698 | None:intergenic | 25.0% |
| !!! | TCTTCATGTTTTTAAAATGG+AGG | - | chr4_3:31483788-31483807 | Msa0637980:intron | 25.0% |
| ! | TATGAACTCTTTAACATAGT+TGG | + | chr4_3:31483944-31483963 | None:intergenic | 25.0% |
| ! | TATGTTAAAGAGTTCATACA+TGG | - | chr4_3:31483946-31483965 | Msa0637980:intron | 25.0% |
| ! | GACATAACTAGTATTCTAAT+AGG | + | chr4_3:31484212-31484231 | None:intergenic | 25.0% |
| ! | TCAGCCAAAAAATAATACAT+TGG | + | chr4_3:31484287-31484306 | None:intergenic | 25.0% |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr4_3:31483375-31483394 | None:intergenic | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | - | chr4_3:31483544-31483563 | Msa0637980:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | - | chr4_3:31483582-31483601 | Msa0637980:intron | 30.0% | |
| ! | TGTAACTGTCTATGGATTAT+TGG | - | chr4_3:31483590-31483609 | Msa0637980:intron | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | + | chr4_3:31483690-31483709 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAAAATGGAGGTGT+TGG | - | chr4_3:31483794-31483813 | Msa0637980:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | - | chr4_3:31483857-31483876 | Msa0637980:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | + | chr4_3:31483940-31483959 | None:intergenic | 30.0% | |
| AACACGTCAAACAATAAACT+TGG | + | chr4_3:31484319-31484338 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | + | chr4_3:31484590-31484609 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | + | chr4_3:31484591-31484610 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | - | chr4_3:31484590-31484609 | Msa0637980:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | + | chr4_3:31484691-31484710 | None:intergenic | 30.0% |
| TTCAGTGTAATTACAAGTGT+CGG | + | chr4_3:31483375-31483394 | None:intergenic | 30.0% | |
| TCAAACAATTCCTACTTTCT+AGG | - | chr4_3:31483544-31483563 | Msa0637980:intron | 30.0% | |
| AACTCTATTGTAACTGTCTA+TGG | - | chr4_3:31483582-31483601 | Msa0637980:intron | 30.0% | |
| ! | TGTAACTGTCTATGGATTAT+TGG | - | chr4_3:31483590-31483609 | Msa0637980:intron | 30.0% |
| AAAGTTCTTGCATGATAAAG+AGG | + | chr4_3:31483690-31483709 | None:intergenic | 30.0% | |
| !!! | TGTTTTTAAAATGGAGGTGT+TGG | - | chr4_3:31483794-31483813 | Msa0637980:intron | 30.0% |
| ! | GCATTTTTGTTAGTTGAGTT+AGG | - | chr4_3:31483857-31483876 | Msa0637980:intron | 30.0% |
| AACTCTTTAACATAGTTGGA+TGG | + | chr4_3:31483940-31483959 | None:intergenic | 30.0% | |
| AACACGTCAAACAATAAACT+TGG | + | chr4_3:31484319-31484338 | None:intergenic | 30.0% | |
| GTCATGTGATTGCAAAATTT+GGG | + | chr4_3:31484590-31484609 | None:intergenic | 30.0% | |
| TGTCATGTGATTGCAAAATT+TGG | + | chr4_3:31484591-31484610 | None:intergenic | 30.0% | |
| ! | AAATTTTGCAATCACATGAC+AGG | - | chr4_3:31484590-31484609 | Msa0637980:CDS | 30.0% |
| ! | AAGTTTTTCTCAAAAGGAGA+GGG | + | chr4_3:31484691-31484710 | None:intergenic | 30.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | + | chr4_3:31483190-31483209 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | + | chr4_3:31483249-31483268 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | + | chr4_3:31483557-31483576 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | + | chr4_3:31483661-31483680 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | + | chr4_3:31484087-31484106 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | - | chr4_3:31484216-31484235 | Msa0637980:CDS | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | + | chr4_3:31484271-31484290 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | + | chr4_3:31484272-31484291 | None:intergenic | 35.0% |
| ATGGAAACAATTATGCTGCT+TGG | - | chr4_3:31484543-31484562 | Msa0637980:intron | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | + | chr4_3:31484692-31484711 | None:intergenic | 35.0% |
| !!! | TGAAGAAGCTAGCTTTTTCA+TGG | + | chr4_3:31483190-31483209 | None:intergenic | 35.0% |
| AATGGAGTTCACTTACTTCA+AGG | + | chr4_3:31483249-31483268 | None:intergenic | 35.0% | |
| ! | TCACAAAGTACCTAGAAAGT+AGG | + | chr4_3:31483557-31483576 | None:intergenic | 35.0% |
| TTAGGACATTACCATATCCA+TGG | + | chr4_3:31483661-31483680 | None:intergenic | 35.0% | |
| !! | TATGGATTTAAGGTTGGTGA+TGG | + | chr4_3:31484087-31484106 | None:intergenic | 35.0% |
| GAATACTAGTTATGTCTCGA+TGG | - | chr4_3:31484216-31484235 | Msa0637980:CDS | 35.0% | |
| ! | ACATTGGTTAGTCACACATT+GGG | + | chr4_3:31484271-31484290 | None:intergenic | 35.0% |
| ! | TACATTGGTTAGTCACACAT+TGG | + | chr4_3:31484272-31484291 | None:intergenic | 35.0% |
| ATGGAAACAATTATGCTGCT+TGG | - | chr4_3:31484543-31484562 | Msa0637980:intron | 35.0% | |
| ! | CAAGTTTTTCTCAAAAGGAG+AGG | + | chr4_3:31484692-31484711 | None:intergenic | 35.0% |
| GAATCTGCCACCTATTGTTA+AGG | - | chr4_3:31483114-31483133 | Msa0637980:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | + | chr4_3:31483124-31483143 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | - | chr4_3:31483121-31483140 | Msa0637980:CDS | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | + | chr4_3:31483127-31483146 | None:intergenic | 40.0% | |
| TATGAAGCATGTACACTCCT+CGG | - | chr4_3:31483297-31483316 | Msa0637980:CDS | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | + | chr4_3:31483466-31483485 | None:intergenic | 40.0% | |
| TAAAGTCGGACGTTATGATC+GGG | + | chr4_3:31483829-31483848 | None:intergenic | 40.0% | |
| GTAAAGTCGGACGTTATGAT+CGG | + | chr4_3:31483830-31483849 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | - | chr4_3:31484524-31484543 | Msa0637980:intron | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | + | chr4_3:31484572-31484591 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTCAT+TGG | - | chr4_3:31484614-31484633 | Msa0637980:CDS | 40.0% |
| GAATCTGCCACCTATTGTTA+AGG | - | chr4_3:31483114-31483133 | Msa0637980:CDS | 40.0% | |
| CCAAGAACCTTAACAATAGG+TGG | + | chr4_3:31483124-31483143 | None:intergenic | 40.0% | |
| CCACCTATTGTTAAGGTTCT+TGG | - | chr4_3:31483121-31483140 | Msa0637980:CDS | 40.0% | |
| AGGCCAAGAACCTTAACAAT+AGG | + | chr4_3:31483127-31483146 | None:intergenic | 40.0% | |
| TATGAAGCATGTACACTCCT+CGG | - | chr4_3:31483297-31483316 | Msa0637980:CDS | 40.0% | |
| CACATATATGCTATGAAGCG+AGG | + | chr4_3:31483466-31483485 | None:intergenic | 40.0% | |
| TAAAGTCGGACGTTATGATC+GGG | + | chr4_3:31483829-31483848 | None:intergenic | 40.0% | |
| GTAAAGTCGGACGTTATGAT+CGG | + | chr4_3:31483830-31483849 | None:intergenic | 40.0% | |
| ATAGCTCAAGTGGCAAAGAA+TGG | - | chr4_3:31484524-31484543 | Msa0637980:intron | 40.0% | |
| TTGGGAACTGAACCACAAAT+CGG | + | chr4_3:31484572-31484591 | None:intergenic | 40.0% | |
| ! | GCTTTAGTCGCTAGTTTCAT+TGG | - | chr4_3:31484614-31484633 | Msa0637980:CDS | 40.0% |
| ! | GTGGCAGATTCTACTAGTCT+TGG | + | chr4_3:31483105-31483124 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | - | chr4_3:31483130-31483149 | Msa0637980:CDS | 45.0% |
| CATGACAACAACTGCTGACA+AGG | + | chr4_3:31483159-31483178 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | - | chr4_3:31483157-31483176 | Msa0637980:CDS | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | + | chr4_3:31483245-31483264 | None:intergenic | 45.0% | |
| !! | TACAAGTGTCGGTGTCGTAT+CGG | + | chr4_3:31483364-31483383 | None:intergenic | 45.0% |
| ATGAAGCGAGGATACAGACA+CGG | + | chr4_3:31483454-31483473 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | + | chr4_3:31483617-31483636 | None:intergenic | 45.0% | |
| AAAGTCGGACGTTATGATCG+GGG | + | chr4_3:31483828-31483847 | None:intergenic | 45.0% | |
| AGCGTGTTTGAGAGATGAGA+AGG | + | chr4_3:31484119-31484138 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | - | chr4_3:31484232-31484251 | Msa0637980:intron | 45.0% | |
| !! | AGCATTGGCTATAGCTCAAG+TGG | - | chr4_3:31484514-31484533 | Msa0637980:intron | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | + | chr4_3:31484672-31484691 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | + | chr4_3:31484685-31484704 | None:intergenic | 45.0% | |
| ! | GTGGCAGATTCTACTAGTCT+TGG | + | chr4_3:31483105-31483124 | None:intergenic | 45.0% |
| ! | GTTAAGGTTCTTGGCCTTCT+CGG | - | chr4_3:31483130-31483149 | Msa0637980:CDS | 45.0% |
| CATGACAACAACTGCTGACA+AGG | + | chr4_3:31483159-31483178 | None:intergenic | 45.0% | |
| CTTGTCAGCAGTTGTTGTCA+TGG | - | chr4_3:31483157-31483176 | Msa0637980:CDS | 45.0% | |
| GAGTTCACTTACTTCAAGGC+AGG | + | chr4_3:31483245-31483264 | None:intergenic | 45.0% | |
| !! | TACAAGTGTCGGTGTCGTAT+CGG | + | chr4_3:31483364-31483383 | None:intergenic | 45.0% |
| ATGAAGCGAGGATACAGACA+CGG | + | chr4_3:31483454-31483473 | None:intergenic | 45.0% | |
| AGCTTTCTGCAGGAAGAAAG+AGG | + | chr4_3:31483617-31483636 | None:intergenic | 45.0% | |
| AAAGTCGGACGTTATGATCG+GGG | + | chr4_3:31483828-31483847 | None:intergenic | 45.0% | |
| AGCGTGTTTGAGAGATGAGA+AGG | + | chr4_3:31484119-31484138 | None:intergenic | 45.0% | |
| TCGATGGAGATTGAGTCTAC+AGG | - | chr4_3:31484232-31484251 | Msa0637980:intron | 45.0% | |
| !! | AGCATTGGCTATAGCTCAAG+TGG | - | chr4_3:31484514-31484533 | Msa0637980:intron | 45.0% |
| AGGGTCAAGGACAGTATGAA+TGG | + | chr4_3:31484672-31484691 | None:intergenic | 45.0% | |
| TTCTCAAAAGGAGAGGGTCA+AGG | + | chr4_3:31484685-31484704 | None:intergenic | 45.0% | |
| GACAACAACTGCTGACAAGG+TGG | + | chr4_3:31483156-31483175 | None:intergenic | 50.0% | |
| GCATGTACACTCCTCGGATT+AGG | - | chr4_3:31483303-31483322 | Msa0637980:CDS | 50.0% | |
| GTCAGTGTCCATGTCGTGTT+TGG | - | chr4_3:31483425-31483444 | Msa0637980:intron | 50.0% | |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | - | chr4_3:31483622-31483641 | Msa0637980:intron | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | - | chr4_3:31483647-31483666 | Msa0637980:intron | 50.0% | |
| CTCAAGCATCTCTGCAGCAT+TGG | - | chr4_3:31484499-31484518 | Msa0637980:intron | 50.0% | |
| GACAACAACTGCTGACAAGG+TGG | + | chr4_3:31483156-31483175 | None:intergenic | 50.0% | |
| GCATGTACACTCCTCGGATT+AGG | - | chr4_3:31483303-31483322 | Msa0637980:CDS | 50.0% | |
| GTCAGTGTCCATGTCGTGTT+TGG | - | chr4_3:31483425-31483444 | Msa0637980:intron | 50.0% | |
| ! | TTCCTGCAGAAAGCTTGCTC+TGG | - | chr4_3:31483622-31483641 | Msa0637980:intron | 50.0% |
| ACTTGTGGTCGCCATGGATA+TGG | - | chr4_3:31483647-31483666 | Msa0637980:intron | 50.0% | |
| CTCAAGCATCTCTGCAGCAT+TGG | - | chr4_3:31484499-31484518 | Msa0637980:intron | 50.0% | |
| !! | TGTCGGTGTCGTATCGGTGT+CGG | + | chr4_3:31483358-31483377 | None:intergenic | 55.0% |
| CACGGACACCAAACACGACA+TGG | + | chr4_3:31483436-31483455 | None:intergenic | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | - | chr4_3:31483632-31483651 | Msa0637980:intron | 55.0% |
| !! | GCTGCTTGGCTACCGATTTG+TGG | - | chr4_3:31484557-31484576 | Msa0637980:intron | 55.0% |
| !! | TGTCGGTGTCGTATCGGTGT+CGG | + | chr4_3:31483358-31483377 | None:intergenic | 55.0% |
| CACGGACACCAAACACGACA+TGG | + | chr4_3:31483436-31483455 | None:intergenic | 55.0% | |
| ! | AAGCTTGCTCTGGCGACTTG+TGG | - | chr4_3:31483632-31483651 | Msa0637980:intron | 55.0% |
| !! | GCTGCTTGGCTACCGATTTG+TGG | - | chr4_3:31484557-31484576 | Msa0637980:intron | 55.0% |
| TGCTGACAAGGTGGCCGAGA+AGG | + | chr4_3:31483147-31483166 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr4_3:31483313-31483332 | Msa0637980:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4_3:31483319-31483338 | Msa0637980:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr4_3:31483335-31483354 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | + | chr4_3:31483627-31483646 | None:intergenic | 60.0% | |
| TGCTGACAAGGTGGCCGAGA+AGG | + | chr4_3:31483147-31483166 | None:intergenic | 60.0% | |
| ! | TCCTCGGATTAGGCGTGTCC+CGG | - | chr4_3:31483313-31483332 | Msa0637980:intron | 60.0% |
| GATTAGGCGTGTCCCGGTGT+CGG | - | chr4_3:31483319-31483338 | Msa0637980:intron | 60.0% | |
| ACACGACACGTGTCCGACAC+CGG | + | chr4_3:31483335-31483354 | None:intergenic | 60.0% | |
| CGCCAGAGCAAGCTTTCTGC+AGG | + | chr4_3:31483627-31483646 | None:intergenic | 60.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr4_3:31483317-31483336 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr4_3:31483334-31483353 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | - | chr4_3:31483641-31483660 | Msa0637980:intron | 65.0% | |
| ACCGGGACACGCCTAATCCG+AGG | + | chr4_3:31483317-31483336 | None:intergenic | 65.0% | |
| CACGACACGTGTCCGACACC+GGG | + | chr4_3:31483334-31483353 | None:intergenic | 65.0% | |
| CTGGCGACTTGTGGTCGCCA+TGG | - | chr4_3:31483641-31483660 | Msa0637980:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 31483098 | 31484712 | 31483098 | ID=Msa0637980;Name=Msa0637980 |
| chr4_3 | mRNA | 31483098 | 31484712 | 31483098 | ID=Msa0637980-mRNA-1;Parent=Msa0637980;Name=Msa0637980-mRNA-1;_AED=0.04;_eAED=0.05;_QI=0|0|0|1|1|1|3|0|163 |
| chr4_3 | exon | 31484558 | 31484712 | 31484558 | ID=Msa0637980-mRNA-1:exon:7379;Parent=Msa0637980-mRNA-1 |
| chr4_3 | exon | 31484142 | 31484244 | 31484142 | ID=Msa0637980-mRNA-1:exon:7378;Parent=Msa0637980-mRNA-1 |
| chr4_3 | exon | 31483098 | 31483331 | 31483098 | ID=Msa0637980-mRNA-1:exon:7377;Parent=Msa0637980-mRNA-1 |
| chr4_3 | CDS | 31484558 | 31484712 | 31484558 | ID=Msa0637980-mRNA-1:cds;Parent=Msa0637980-mRNA-1 |
| chr4_3 | CDS | 31484142 | 31484244 | 31484142 | ID=Msa0637980-mRNA-1:cds;Parent=Msa0637980-mRNA-1 |
| chr4_3 | CDS | 31483098 | 31483331 | 31483098 | ID=Msa0637980-mRNA-1:cds;Parent=Msa0637980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
