Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638950 | AES90646.1 | 97.156 | 211 | 6 | 0 | 1 | 211 | 1 | 211 | 6.23e-148 | 430 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638950 | sp|F8WKW1|UGT2_GARJA | 55.122 | 205 | 92 | 0 | 3 | 207 | 7 | 211 | 2.18e-80 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0560300 | Msa0638950 | 0.863660 | 2.123753e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638950 | MtrunA17_Chr4g0050341 | 97.156 | 211 | 6 | 0 | 1 | 211 | 13 | 223 | 5.94e-152 | 431 |
| Msa0638950 | MtrunA17_Chr3g0092641 | 54.187 | 203 | 90 | 2 | 6 | 207 | 11 | 211 | 4.11e-74 | 231 |
| Msa0638950 | MtrunA17_Chr5g0426431 | 53.960 | 202 | 90 | 2 | 7 | 207 | 12 | 211 | 4.29e-73 | 229 |
| Msa0638950 | MtrunA17_Chr3g0118671 | 52.239 | 201 | 94 | 1 | 7 | 207 | 6 | 204 | 8.26e-70 | 220 |
| Msa0638950 | MtrunA17_Chr3g0118751 | 50.739 | 203 | 98 | 1 | 5 | 207 | 4 | 204 | 3.10e-69 | 218 |
| Msa0638950 | MtrunA17_Chr3g0118771 | 49.261 | 203 | 101 | 1 | 5 | 207 | 19 | 219 | 2.61e-65 | 209 |
| Msa0638950 | MtrunA17_Chr2g0278711 | 46.341 | 205 | 103 | 2 | 5 | 208 | 9 | 207 | 3.85e-63 | 203 |
| Msa0638950 | MtrunA17_Chr3g0118691 | 48.276 | 203 | 103 | 1 | 5 | 207 | 13 | 213 | 2.48e-62 | 201 |
| Msa0638950 | MtrunA17_Chr3g0118661 | 45.854 | 205 | 109 | 1 | 5 | 209 | 11 | 213 | 3.48e-62 | 201 |
| Msa0638950 | MtrunA17_Chr6g0454181 | 48.544 | 206 | 103 | 2 | 5 | 207 | 8 | 213 | 5.38e-62 | 200 |
| Msa0638950 | MtrunA17_Chr3g0118711 | 47.826 | 207 | 106 | 1 | 5 | 211 | 11 | 215 | 1.32e-61 | 199 |
| Msa0638950 | MtrunA17_Chr6g0454191 | 49.275 | 207 | 101 | 2 | 5 | 207 | 8 | 214 | 1.83e-61 | 199 |
| Msa0638950 | MtrunA17_Chr3g0078841 | 47.087 | 206 | 105 | 2 | 4 | 207 | 7 | 210 | 1.11e-60 | 197 |
| Msa0638950 | MtrunA17_Chr6g0454341 | 47.317 | 205 | 104 | 2 | 5 | 207 | 8 | 210 | 1.70e-60 | 196 |
| Msa0638950 | MtrunA17_Chr8g0336271 | 45.588 | 204 | 108 | 2 | 5 | 207 | 8 | 209 | 2.04e-60 | 191 |
| Msa0638950 | MtrunA17_Chr3g0118701 | 46.305 | 203 | 107 | 1 | 5 | 207 | 13 | 213 | 2.39e-60 | 196 |
| Msa0638950 | MtrunA17_Chr5g0426411 | 54.217 | 166 | 73 | 2 | 4 | 168 | 9 | 172 | 1.45e-58 | 182 |
| Msa0638950 | MtrunA17_Chr8g0336331 | 45.588 | 204 | 108 | 2 | 5 | 207 | 8 | 209 | 3.19e-58 | 190 |
| Msa0638950 | MtrunA17_Chr6g0454301 | 47.847 | 209 | 105 | 2 | 5 | 211 | 261 | 467 | 1.31e-57 | 193 |
| Msa0638950 | MtrunA17_Chr8g0359821 | 48.293 | 205 | 105 | 1 | 5 | 208 | 8 | 212 | 4.82e-57 | 187 |
| Msa0638950 | MtrunA17_Chr6g0454401 | 48.558 | 208 | 101 | 5 | 5 | 207 | 8 | 214 | 2.34e-56 | 186 |
| Msa0638950 | MtrunA17_Chr6g0454251 | 42.654 | 211 | 118 | 2 | 1 | 208 | 1 | 211 | 6.20e-55 | 180 |
| Msa0638950 | MtrunA17_Chr6g0453951 | 45.894 | 207 | 109 | 2 | 5 | 208 | 55 | 261 | 9.03e-55 | 182 |
| Msa0638950 | MtrunA17_Chr6g0454321 | 45.854 | 205 | 107 | 3 | 5 | 207 | 8 | 210 | 1.31e-54 | 184 |
| Msa0638950 | MtrunA17_Chr6g0454321 | 43.919 | 148 | 80 | 2 | 1 | 145 | 498 | 645 | 1.63e-29 | 115 |
| Msa0638950 | MtrunA17_Chr6g0454331 | 43.868 | 212 | 114 | 2 | 1 | 207 | 1 | 212 | 4.04e-53 | 177 |
| Msa0638950 | MtrunA17_Chr6g0454231 | 45.854 | 205 | 107 | 2 | 5 | 207 | 248 | 450 | 8.40e-53 | 176 |
| Msa0638950 | MtrunA17_Chr6g0454351 | 44.928 | 207 | 111 | 2 | 5 | 208 | 10 | 216 | 4.93e-52 | 174 |
| Msa0638950 | MtrunA17_Chr6g0454211 | 46.919 | 211 | 109 | 2 | 1 | 208 | 291 | 501 | 2.32e-51 | 177 |
| Msa0638950 | MtrunA17_Chr6g0454211 | 39.535 | 86 | 50 | 2 | 125 | 209 | 1 | 85 | 5.14e-13 | 67.4 |
| Msa0638950 | MtrunA17_Chr6g0454261 | 43.602 | 211 | 116 | 2 | 2 | 209 | 5 | 215 | 2.52e-51 | 172 |
| Msa0638950 | MtrunA17_Chr6g0454361 | 47.826 | 207 | 105 | 2 | 5 | 208 | 9 | 215 | 4.28e-51 | 172 |
| Msa0638950 | MtrunA17_Chr6g0454291 | 46.919 | 211 | 109 | 2 | 1 | 208 | 1 | 211 | 8.72e-51 | 171 |
| Msa0638950 | MtrunA17_Chr6g0453961 | 43.478 | 207 | 113 | 3 | 5 | 207 | 17 | 223 | 3.44e-48 | 164 |
| Msa0638950 | MtrunA17_Chr6g0454141 | 43.415 | 205 | 113 | 2 | 5 | 206 | 8 | 212 | 4.31e-48 | 164 |
| Msa0638950 | MtrunA17_Chr6g0454281 | 44.681 | 188 | 101 | 3 | 5 | 189 | 8 | 195 | 8.15e-47 | 154 |
| Msa0638950 | MtrunA17_Chr6g0452771 | 46.602 | 206 | 107 | 2 | 5 | 207 | 8 | 213 | 1.17e-45 | 157 |
| Msa0638950 | MtrunA17_Chr6g0454201 | 46.411 | 209 | 109 | 2 | 2 | 207 | 6 | 214 | 4.60e-45 | 156 |
| Msa0638950 | MtrunA17_Chr6g0454151 | 43.689 | 206 | 113 | 2 | 2 | 204 | 5 | 210 | 4.68e-42 | 148 |
| Msa0638950 | MtrunA17_Chr6g0454121 | 42.233 | 206 | 117 | 2 | 4 | 207 | 7 | 212 | 9.63e-41 | 144 |
| Msa0638950 | MtrunA17_Chr6g0454131 | 42.718 | 206 | 116 | 2 | 4 | 207 | 7 | 212 | 1.92e-40 | 144 |
| Msa0638950 | MtrunA17_Chr7g0217881 | 40.291 | 206 | 102 | 3 | 5 | 207 | 8 | 195 | 2.89e-35 | 129 |
| Msa0638950 | MtrunA17_Chr5g0423981 | 39.614 | 207 | 85 | 5 | 5 | 207 | 8 | 178 | 5.03e-33 | 123 |
| Msa0638950 | MtrunA17_Chr3g0118731 | 44.737 | 114 | 61 | 1 | 59 | 172 | 28 | 139 | 4.53e-26 | 99.0 |
| Msa0638950 | MtrunA17_Chr3g0112761 | 33.508 | 191 | 104 | 5 | 7 | 197 | 8 | 175 | 1.80e-25 | 102 |
| Msa0638950 | MtrunA17_Chr8g0355011 | 44.792 | 96 | 53 | 0 | 113 | 208 | 43 | 138 | 3.39e-24 | 98.2 |
| Msa0638950 | MtrunA17_Chr4g0032331 | 32.195 | 205 | 117 | 6 | 5 | 207 | 6 | 190 | 3.25e-23 | 96.7 |
| Msa0638950 | MtrunA17_Chr5g0412131 | 30.660 | 212 | 127 | 8 | 2 | 208 | 7 | 203 | 6.84e-22 | 92.8 |
| Msa0638950 | MtrunA17_Chr5g0412101 | 29.524 | 210 | 129 | 7 | 2 | 206 | 7 | 202 | 2.66e-21 | 91.3 |
| Msa0638950 | MtrunA17_Chr3g0112771 | 30.729 | 192 | 111 | 5 | 8 | 199 | 13 | 182 | 3.30e-21 | 90.9 |
| Msa0638950 | MtrunA17_Chr3g0118741 | 60.345 | 58 | 23 | 0 | 4 | 61 | 3 | 60 | 2.40e-18 | 76.3 |
| Msa0638950 | MtrunA17_Chr6g0454381 | 43.373 | 83 | 47 | 0 | 125 | 207 | 1 | 83 | 1.28e-16 | 73.6 |
| Msa0638950 | MtrunA17_Chr6g0464921 | 28.718 | 195 | 116 | 5 | 6 | 200 | 10 | 181 | 1.79e-16 | 77.4 |
| Msa0638950 | MtrunA17_Chr6g0453981 | 40.476 | 84 | 50 | 0 | 125 | 208 | 1 | 84 | 5.48e-16 | 73.9 |
| Msa0638950 | MtrunA17_Chr5g0412111 | 28.230 | 209 | 127 | 8 | 6 | 207 | 4 | 196 | 7.45e-15 | 72.8 |
| Msa0638950 | MtrunA17_Chr6g0464881 | 26.168 | 214 | 131 | 7 | 6 | 215 | 10 | 200 | 1.78e-14 | 71.6 |
| Msa0638950 | MtrunA17_Chr5g0431441 | 27.979 | 193 | 121 | 6 | 7 | 197 | 18 | 194 | 3.63e-14 | 70.5 |
| Msa0638950 | MtrunA17_Chr5g0414331 | 25.871 | 201 | 110 | 5 | 7 | 201 | 13 | 180 | 4.13e-13 | 67.4 |
| Msa0638950 | MtrunA17_Chr3g0106231 | 29.108 | 213 | 113 | 9 | 7 | 216 | 18 | 195 | 8.40e-13 | 66.6 |
| Msa0638950 | MtrunA17_Chr6g0453941 | 32.231 | 121 | 77 | 2 | 91 | 208 | 18 | 136 | 2.29e-12 | 64.7 |
| Msa0638950 | MtrunA17_Chr1g0161351 | 26.437 | 174 | 113 | 5 | 3 | 170 | 33 | 197 | 2.41e-12 | 65.5 |
| Msa0638950 | MtrunA17_Chr7g0267931 | 69.231 | 39 | 11 | 1 | 10 | 47 | 23 | 61 | 7.52e-12 | 58.9 |
| Msa0638950 | MtrunA17_Chr8g0380531 | 31.206 | 141 | 89 | 3 | 4 | 144 | 7 | 139 | 7.69e-12 | 63.9 |
| Msa0638950 | MtrunA17_Chr6g0464861 | 31.206 | 141 | 86 | 3 | 6 | 146 | 10 | 139 | 1.02e-11 | 63.5 |
| Msa0638950 | MtrunA17_Chr7g0218811 | 29.530 | 149 | 89 | 4 | 6 | 150 | 14 | 150 | 1.08e-11 | 63.5 |
| Msa0638950 | MtrunA17_Chr5g0393591 | 28.846 | 156 | 95 | 6 | 7 | 156 | 17 | 162 | 1.21e-11 | 63.2 |
| Msa0638950 | MtrunA17_Chr1g0207971 | 26.190 | 168 | 105 | 4 | 7 | 170 | 8 | 160 | 2.57e-11 | 62.4 |
| Msa0638950 | MtrunA17_Chr7g0249981 | 25.854 | 205 | 125 | 6 | 3 | 206 | 21 | 199 | 2.77e-11 | 62.4 |
| Msa0638950 | MtrunA17_Chr5g0414321 | 24.876 | 201 | 112 | 5 | 7 | 201 | 11 | 178 | 5.43e-11 | 61.2 |
| Msa0638950 | MtrunA17_Chr1g0207861 | 26.744 | 172 | 113 | 6 | 4 | 170 | 5 | 168 | 5.85e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0638950 | AT1G22380.1 | 52.174 | 207 | 97 | 1 | 5 | 211 | 11 | 215 | 1.64e-72 | 228 |
| Msa0638950 | AT1G22370.2 | 50.725 | 207 | 95 | 2 | 5 | 211 | 11 | 210 | 7.85e-72 | 226 |
| Msa0638950 | AT1G22400.1 | 52.195 | 205 | 95 | 2 | 5 | 208 | 11 | 213 | 2.07e-71 | 225 |
| Msa0638950 | AT1G22360.2 | 49.275 | 207 | 103 | 1 | 5 | 211 | 8 | 212 | 2.46e-69 | 219 |
| Msa0638950 | AT1G22360.1 | 49.275 | 207 | 103 | 1 | 5 | 211 | 8 | 212 | 2.91e-69 | 219 |
| Msa0638950 | AT1G22340.1 | 47.343 | 207 | 107 | 1 | 5 | 211 | 11 | 215 | 6.34e-66 | 211 |
| Msa0638950 | AT1G78270.1 | 48.276 | 203 | 102 | 2 | 5 | 207 | 11 | 210 | 6.63e-63 | 203 |
| Msa0638950 | AT3G11340.1 | 29.798 | 198 | 111 | 7 | 4 | 199 | 6 | 177 | 1.38e-20 | 89.4 |
| Msa0638950 | AT5G05870.1 | 32.020 | 203 | 116 | 5 | 7 | 206 | 8 | 191 | 3.19e-20 | 88.6 |
| Msa0638950 | AT5G38040.1 | 31.937 | 191 | 98 | 6 | 15 | 198 | 18 | 183 | 3.00e-19 | 85.5 |
| Msa0638950 | AT3G46660.1 | 31.068 | 206 | 107 | 6 | 2 | 198 | 9 | 188 | 3.09e-19 | 85.5 |
| Msa0638950 | AT5G05900.1 | 32.941 | 170 | 100 | 3 | 7 | 172 | 8 | 167 | 4.67e-19 | 85.1 |
| Msa0638950 | AT3G46690.1 | 29.897 | 194 | 118 | 4 | 5 | 198 | 7 | 182 | 1.80e-18 | 83.6 |
| Msa0638950 | AT3G46650.1 | 32.164 | 171 | 98 | 6 | 1 | 168 | 5 | 160 | 9.05e-18 | 81.3 |
| Msa0638950 | AT5G38010.1 | 31.707 | 205 | 104 | 9 | 5 | 198 | 8 | 187 | 1.07e-17 | 81.3 |
| Msa0638950 | AT5G59590.1 | 30.500 | 200 | 105 | 8 | 7 | 198 | 10 | 183 | 1.31e-17 | 80.9 |
| Msa0638950 | AT3G46670.1 | 27.778 | 198 | 123 | 5 | 2 | 198 | 4 | 182 | 1.46e-17 | 80.9 |
| Msa0638950 | AT2G36970.1 | 25.688 | 218 | 139 | 6 | 2 | 209 | 5 | 209 | 4.27e-17 | 79.7 |
| Msa0638950 | AT4G15490.1 | 27.143 | 210 | 130 | 7 | 1 | 204 | 1 | 193 | 4.81e-17 | 79.3 |
| Msa0638950 | AT5G05860.1 | 32.530 | 166 | 98 | 4 | 7 | 171 | 9 | 161 | 7.71e-17 | 79.0 |
| Msa0638950 | AT5G59580.1 | 27.500 | 200 | 114 | 6 | 5 | 198 | 7 | 181 | 1.03e-16 | 78.6 |
| Msa0638950 | AT3G21560.1 | 29.268 | 164 | 97 | 3 | 3 | 156 | 8 | 162 | 2.57e-16 | 77.4 |
| Msa0638950 | AT3G55700.1 | 30.151 | 199 | 110 | 6 | 7 | 198 | 8 | 184 | 7.84e-16 | 75.9 |
| Msa0638950 | AT5G05880.1 | 29.518 | 166 | 107 | 2 | 7 | 172 | 8 | 163 | 8.02e-16 | 75.9 |
| Msa0638950 | AT2G43820.1 | 28.986 | 207 | 114 | 6 | 1 | 205 | 1 | 176 | 1.01e-15 | 75.5 |
| Msa0638950 | AT2G43840.1 | 30.622 | 209 | 110 | 8 | 1 | 206 | 1 | 177 | 1.14e-15 | 75.5 |
| Msa0638950 | AT2G43840.2 | 30.622 | 209 | 110 | 8 | 1 | 206 | 1 | 177 | 1.22e-15 | 75.5 |
| Msa0638950 | AT4G15500.1 | 28.571 | 161 | 99 | 4 | 1 | 156 | 3 | 152 | 4.86e-15 | 73.6 |
| Msa0638950 | AT5G05890.1 | 30.000 | 170 | 105 | 3 | 7 | 172 | 8 | 167 | 2.25e-14 | 71.6 |
| Msa0638950 | AT3G46680.1 | 28.205 | 195 | 121 | 5 | 5 | 198 | 7 | 183 | 2.17e-13 | 68.9 |
| Msa0638950 | AT2G28080.1 | 24.272 | 206 | 137 | 4 | 11 | 210 | 22 | 214 | 1.22e-12 | 66.6 |
| Msa0638950 | AT4G15480.1 | 26.875 | 160 | 108 | 3 | 3 | 158 | 15 | 169 | 1.30e-12 | 66.6 |
| Msa0638950 | AT3G46700.1 | 28.866 | 194 | 115 | 6 | 5 | 198 | 7 | 177 | 1.58e-12 | 66.2 |
| Msa0638950 | AT2G36800.1 | 32.653 | 147 | 89 | 5 | 7 | 148 | 12 | 153 | 1.63e-12 | 66.2 |
| Msa0638950 | AT3G46720.1 | 26.289 | 194 | 124 | 4 | 5 | 198 | 7 | 181 | 1.81e-12 | 66.2 |
| Msa0638950 | AT2G30150.2 | 28.431 | 204 | 120 | 6 | 1 | 196 | 1 | 186 | 4.19e-12 | 65.1 |
| Msa0638950 | AT2G30140.2 | 29.442 | 197 | 114 | 7 | 7 | 200 | 13 | 187 | 7.80e-12 | 64.3 |
| Msa0638950 | AT3G55710.1 | 27.551 | 196 | 119 | 7 | 7 | 199 | 8 | 183 | 1.15e-11 | 63.5 |
| Msa0638950 | AT3G02100.1 | 28.758 | 153 | 97 | 6 | 5 | 151 | 11 | 157 | 1.18e-11 | 63.5 |
| Msa0638950 | AT2G30140.1 | 29.442 | 197 | 115 | 7 | 7 | 200 | 13 | 188 | 1.31e-11 | 63.5 |
| Msa0638950 | AT1G05560.2 | 26.108 | 203 | 120 | 8 | 6 | 206 | 54 | 228 | 1.57e-11 | 63.5 |
| Msa0638950 | AT1G05560.1 | 26.108 | 203 | 120 | 8 | 6 | 206 | 4 | 178 | 1.89e-11 | 63.2 |
| Msa0638950 | AT2G36790.1 | 30.818 | 159 | 100 | 4 | 2 | 155 | 8 | 161 | 2.97e-11 | 62.4 |
| Msa0638950 | AT2G26480.1 | 25.248 | 202 | 116 | 5 | 2 | 197 | 3 | 175 | 3.66e-11 | 62.4 |
Find 49 sgRNAs with CRISPR-Local
Find 246 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAATCTGGAAGGCCCTTTA+AGG | 0.186175 | 4_3:+34601085 | None:intergenic |
| GAAGGCCCTTTAAGGAATTT+TGG | 0.222666 | 4_3:+34601093 | None:intergenic |
| TAGTGGCCAAAATTCCTTAA+AGG | 0.259263 | 4_3:-34601099 | Msa0638950:CDS |
| AAGACCTTCCCACTTTCTTT+AGG | 0.305737 | 4_3:-34597448 | Msa0638950:CDS |
| AGTTTAACTCCTCTCATTGC+TGG | 0.329539 | 4_3:+34597473 | None:intergenic |
| AGAAAATCAACGTGGAATAA+TGG | 0.344126 | 4_3:-34601030 | Msa0638950:CDS |
| GGGTTTATGTGACCTTGTGC+TGG | 0.367590 | 4_3:+34601212 | None:intergenic |
| ATGGTCTCAAACCGAAAATC+TGG | 0.368637 | 4_3:+34601071 | None:intergenic |
| GGCATTGCATTGCACAAATC+TGG | 0.370579 | 4_3:+34601002 | None:intergenic |
| ATCTTGAAACTGAAGTTGAT+TGG | 0.388599 | 4_3:-34597499 | Msa0638950:CDS |
| CAAACCACATGGGGTCTTGA+TGG | 0.389949 | 4_3:+34601245 | None:intergenic |
| TCAGAAACTATGCATGTAAC+AGG | 0.403791 | 4_3:+34600909 | None:intergenic |
| AGTGGCCAAAATTCCTTAAA+GGG | 0.434964 | 4_3:-34601098 | Msa0638950:CDS |
| AAATAAATGGTACCTTTAAG+TGG | 0.441231 | 4_3:+34600756 | None:intergenic |
| AATGAAATCAACCCACCAAT+AGG | 0.446745 | 4_3:+34600981 | None:intergenic |
| CCTAGTGGATGTGGTATGTT+GGG | 0.447171 | 4_3:-34600819 | Msa0638950:CDS |
| TTTGATGAGCTTCAGAAAAG+AGG | 0.456109 | 4_3:-34600786 | Msa0638950:CDS |
| TCCTAGTGGATGTGGTATGT+TGG | 0.467606 | 4_3:-34600820 | Msa0638950:CDS |
| ATGTGACCTTGTGCTGGGAG+TGG | 0.474387 | 4_3:+34601218 | None:intergenic |
| TGGTGGCAAACCATCAGATA+TGG | 0.482278 | 4_3:+34601052 | None:intergenic |
| TGCAATGCAATGCCTATTGG+TGG | 0.493905 | 4_3:-34600993 | Msa0638950:CDS |
| TTGTGCAATGCAATGCCTAT+TGG | 0.504899 | 4_3:-34600996 | Msa0638950:CDS |
| TTATATACTCCTAGTGGATG+TGG | 0.516712 | 4_3:-34600828 | Msa0638950:CDS |
| ATTTGTAGTCCTAAAGAAAG+TGG | 0.519141 | 4_3:+34597439 | None:intergenic |
| CGGTTTGAGACCATATCTGA+TGG | 0.519613 | 4_3:-34601062 | Msa0638950:CDS |
| GGTTTATGTGACCTTGTGCT+GGG | 0.522722 | 4_3:+34601213 | None:intergenic |
| GATCGTTTGTTAGAATCTAG+TGG | 0.553615 | 4_3:-34601116 | Msa0638950:CDS |
| GTTACATGCATAGTTTCTGA+TGG | 0.554725 | 4_3:-34600906 | Msa0638950:CDS |
| GCAAAACTCCTTCATCATAG+TGG | 0.565427 | 4_3:-34601176 | Msa0638950:CDS |
| TTTGTAGTCCTAAAGAAAGT+GGG | 0.583892 | 4_3:+34597440 | None:intergenic |
| TTTATGTTATATACTCCTAG+TGG | 0.600689 | 4_3:-34600834 | Msa0638950:CDS |
| TGTGTTCCACTCCCAGCACA+AGG | 0.602729 | 4_3:-34601224 | Msa0638950:CDS |
| GGAGTATATAACATAAACTC+AGG | 0.613312 | 4_3:+34600840 | None:intergenic |
| ATGATACAACAGAGAATCAG+TGG | 0.615517 | 4_3:-34597412 | Msa0638950:CDS |
| GGAGTGGAACACAAACCACA+TGG | 0.616527 | 4_3:+34601234 | None:intergenic |
| GATGAGAAGAATGTGTGTGA+TGG | 0.616876 | 4_3:-34597524 | Msa0638950:CDS |
| GCAATGCAATGCCTATTGGT+GGG | 0.634586 | 4_3:-34600992 | Msa0638950:CDS |
| TTGCATTGCACAAATCTGGT+AGG | 0.641964 | 4_3:+34601006 | None:intergenic |
| CCCAACATACCACATCCACT+AGG | 0.646468 | 4_3:+34600819 | None:intergenic |
| GATCAAAATTGAATTGTGTG+TGG | 0.652522 | 4_3:+34601135 | None:intergenic |
| TAGTCCTAAAGAAAGTGGGA+AGG | 0.653972 | 4_3:+34597444 | None:intergenic |
| GATTGGATACCAGCAATGAG+AGG | 0.659998 | 4_3:-34597482 | Msa0638950:CDS |
| GAGTGGAACACAAACCACAT+GGG | 0.660031 | 4_3:+34601235 | None:intergenic |
| ATTGAATTGTGTGTGGACAA+AGG | 0.668033 | 4_3:+34601142 | None:intergenic |
| GGAACCATCAAGACCCCATG+TGG | 0.677960 | 4_3:-34601249 | Msa0638950:CDS |
| TCTCAAACCGAAAATCTGGA+AGG | 0.678366 | 4_3:+34601075 | None:intergenic |
| AGTGGAACACAAACCACATG+GGG | 0.690416 | 4_3:+34601236 | None:intergenic |
| GAAACTATGCATGTAACAGG+AGG | 0.691482 | 4_3:+34600912 | None:intergenic |
| TTGCCACCAGAAAATCAACG+TGG | 0.779000 | 4_3:-34601038 | Msa0638950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATTATTAATTTAAATAAA+TGG | + | chr4_3:34597911-34597930 | None:intergenic | 0.0% |
| !! | TAATTTAATTAATTTATTAA+TGG | - | chr4_3:34598695-34598714 | Msa0638950:intron | 0.0% |
| !! | AATTTAATTAATTTATTAAT+GGG | - | chr4_3:34598696-34598715 | Msa0638950:intron | 0.0% |
| !!! | GTAAATTTTTTCAATATAAA+AGG | + | chr4_3:34597939-34597958 | None:intergenic | 10.0% |
| !!! | AACATTTTTTGTTAAATTTT+AGG | + | chr4_3:34598457-34598476 | None:intergenic | 10.0% |
| !!! | GTAACTTTTATATTTTATTA+AGG | - | chr4_3:34598663-34598682 | Msa0638950:intron | 10.0% |
| !! | TAAAAAAAAAGAAAATTGTT+TGG | + | chr4_3:34600939-34600958 | None:intergenic | 10.0% |
| !!! | TTCTTTTTTTTTAACAATAT+AGG | - | chr4_3:34600946-34600965 | Msa0638950:CDS | 10.0% |
| !!! | AAAGTTTAAAATCTAATTTT+TGG | + | chr4_3:34600973-34600992 | None:intergenic | 10.0% |
| !!! | ATTATAAATTTGTTATCTTT+AGG | - | chr4_3:34601001-34601020 | Msa0638950:CDS | 10.0% |
| !! | TATACAAATCTTATAATATA+AGG | - | chr4_3:34601048-34601067 | Msa0638950:CDS | 10.0% |
| !! | ATACAAATCTTATAATATAA+GGG | - | chr4_3:34601049-34601068 | Msa0638950:CDS | 10.0% |
| !!! | AATTTTTTCAATATAAAAGG+AGG | + | chr4_3:34597936-34597955 | None:intergenic | 15.0% |
| !!! | AATTAATTTATTAATGGGTT+TGG | - | chr4_3:34598701-34598720 | Msa0638950:intron | 15.0% |
| !! | AAATGATGTATCAAATTAAT+TGG | - | chr4_3:34598980-34598999 | Msa0638950:intron | 15.0% |
| !! | TATTTCATGTCAAAAATTAA+AGG | + | chr4_3:34599188-34599207 | None:intergenic | 15.0% |
| !!! | ATTTAACGTCTATTTTATTA+TGG | - | chr4_3:34599309-34599328 | Msa0638950:intron | 15.0% |
| !! | AACTATAAAGTAAAATATAC+CGG | + | chr4_3:34599646-34599665 | None:intergenic | 15.0% |
| !!! | TTGAAATCTTGATTTTTTTT+AGG | - | chr4_3:34599698-34599717 | Msa0638950:intron | 15.0% |
| !!! | GAACTTTATTGATTTTTTAA+GGG | - | chr4_3:34599883-34599902 | Msa0638950:intron | 15.0% |
| !!! | AACTTTATTGATTTTTTAAG+GGG | - | chr4_3:34599884-34599903 | Msa0638950:intron | 15.0% |
| !!! | ACATAATTTTTATTTTGGAT+CGG | - | chr4_3:34600495-34600514 | Msa0638950:intron | 15.0% |
| !! | AAAAAATTTACGTATTTCTC+TGG | - | chr4_3:34597948-34597967 | Msa0638950:intron | 20.0% |
| !! | CTTTAATAATTAGCTACATT+AGG | - | chr4_3:34598092-34598111 | Msa0638950:intron | 20.0% |
| !!! | CGCAATTAGTTATTTTTTAA+GGG | + | chr4_3:34598171-34598190 | None:intergenic | 20.0% |
| !! | CCTTAAAAAATAACTAATTG+CGG | - | chr4_3:34598169-34598188 | Msa0638950:intron | 20.0% |
| !! | CTTAAAAAATAACTAATTGC+GGG | - | chr4_3:34598170-34598189 | Msa0638950:intron | 20.0% |
| !!! | CTATGGATATTATTATGTTT+TGG | + | chr4_3:34598505-34598524 | None:intergenic | 20.0% |
| !!! | TTTTTTGGACTAAATCTAAA+AGG | - | chr4_3:34598641-34598660 | Msa0638950:intron | 20.0% |
| !! | ATATTTGTGAGCAAAATAAA+TGG | + | chr4_3:34598794-34598813 | None:intergenic | 20.0% |
| !! | TAATTGGATGTTAAACAATT+AGG | - | chr4_3:34598996-34599015 | Msa0638950:intron | 20.0% |
| !! | AAGGTTAATTTCTTTGAATT+TGG | + | chr4_3:34599467-34599486 | None:intergenic | 20.0% |
| !!! | CGAACTTTATTGATTTTTTA+AGG | - | chr4_3:34599882-34599901 | Msa0638950:intron | 20.0% |
| !!! | AGAATTAAAATCTACTTTTG+CGG | + | chr4_3:34600147-34600166 | None:intergenic | 20.0% |
| !! | AAAAATTAAATGTTGCACTT+TGG | - | chr4_3:34600379-34600398 | Msa0638950:intron | 20.0% |
| !! | TCCAAAATAAAAATTATGTG+CGG | + | chr4_3:34600494-34600513 | None:intergenic | 20.0% |
| !! | ATCATTATTTCATTACGTAA+TGG | + | chr4_3:34600583-34600602 | None:intergenic | 20.0% |
| !! | ATAAGATTTGTATAAAGTGA+GGG | + | chr4_3:34601042-34601061 | None:intergenic | 20.0% |
| !! | TATAAGATTTGTATAAAGTG+AGG | + | chr4_3:34601043-34601062 | None:intergenic | 20.0% |
| ! | TTTATGTTATATACTCCTAG+TGG | - | chr4_3:34597817-34597836 | Msa0638950:intron | 25.0% |
| ! | AAATAAATGGTACCTTTAAG+TGG | + | chr4_3:34597898-34597917 | None:intergenic | 25.0% |
| ! | GAGAATCAAATCACATTATA+AGG | - | chr4_3:34598067-34598086 | Msa0638950:intron | 25.0% |
| !!! | CCGCAATTAGTTATTTTTTA+AGG | + | chr4_3:34598172-34598191 | None:intergenic | 25.0% |
| !!! | TAGATATTTTAGGATATCCA+TGG | - | chr4_3:34598391-34598410 | Msa0638950:intron | 25.0% |
| ! | TTAAAAGAAAATGTCATCCA+TGG | + | chr4_3:34598411-34598430 | None:intergenic | 25.0% |
| ! | TTCGTTAGAAATGATATCTA+TGG | + | chr4_3:34598522-34598541 | None:intergenic | 25.0% |
| !!! | AATAGTATCGAGGTTTTTTT+TGG | - | chr4_3:34598626-34598645 | Msa0638950:intron | 25.0% |
| !! | TATTCGTTACTTAATGGATA+TGG | + | chr4_3:34598761-34598780 | None:intergenic | 25.0% |
| ! | AATTCTTCAAAGGAATCAAA+GGG | - | chr4_3:34599121-34599140 | Msa0638950:intron | 25.0% |
| !!! | ATTAACCTTTTTTTTTTGCG+TGG | - | chr4_3:34599478-34599497 | Msa0638950:intron | 25.0% |
| !! | TTTTTAGATGCTTTGTGATT+TGG | - | chr4_3:34599562-34599581 | Msa0638950:intron | 25.0% |
| ! | TATCAACATGACACTTTATT+AGG | - | chr4_3:34599616-34599635 | Msa0638950:intron | 25.0% |
| ! | AATCAATAAAGTTCGAATCA+AGG | + | chr4_3:34599877-34599896 | None:intergenic | 25.0% |
| !!! | CAAAAATATTCGGTTTTTTG+CGG | + | chr4_3:34600036-34600055 | None:intergenic | 25.0% |
| ! | CAAACACATCCAAAAATATT+CGG | + | chr4_3:34600046-34600065 | None:intergenic | 25.0% |
| ! | CACATGCATAGAAAAATAAT+AGG | + | chr4_3:34600341-34600360 | None:intergenic | 25.0% |
| !! | CAAATATATGCGGTTTATTT+TGG | + | chr4_3:34600421-34600440 | None:intergenic | 25.0% |
| ! | CAAAATAAACCGCATATATT+TGG | - | chr4_3:34600419-34600438 | Msa0638950:intron | 25.0% |
| ! | AATAAAAATTATGTGCGGTT+CGG | + | chr4_3:34600489-34600508 | None:intergenic | 25.0% |
| !!! | ACCGCACATAATTTTTATTT+TGG | - | chr4_3:34600490-34600509 | Msa0638950:intron | 25.0% |
| ! | ACGTAATGAAATAATGATAG+TGG | - | chr4_3:34600585-34600604 | Msa0638950:intron | 25.0% |
| ! | CCTTGGTTATATAACAAAAA+TGG | + | chr4_3:34600779-34600798 | None:intergenic | 25.0% |
| !!! | CCATTTTTGTTATATAACCA+AGG | - | chr4_3:34600776-34600795 | Msa0638950:CDS | 25.0% |
| !! | TATAACCAAGGATATTTTGT+TGG | - | chr4_3:34600788-34600807 | Msa0638950:CDS | 25.0% |
| ! | TTTAACCAACAAAATATCCT+TGG | + | chr4_3:34600796-34600815 | None:intergenic | 25.0% |
| !! | ATCTTATAATATAAGGGTAC+TGG | - | chr4_3:34601055-34601074 | Msa0638950:CDS | 25.0% |
| ! | TCATCTAACAATACAACAAA+AGG | + | chr4_3:34601112-34601131 | None:intergenic | 25.0% |
| !!! | GTTTTGCTAGTTTTAGCATT+GGG | + | chr4_3:34597462-34597481 | None:intergenic | 30.0% |
| !!! | AGTTTTGCTAGTTTTAGCAT+TGG | + | chr4_3:34597463-34597482 | None:intergenic | 30.0% |
| GATCAAAATTGAATTGTGTG+TGG | + | chr4_3:34597519-34597538 | None:intergenic | 30.0% | |
| !!! | ATTATTCCACGTTGATTTTC+TGG | + | chr4_3:34597622-34597641 | None:intergenic | 30.0% |
| AGAAAATCAACGTGGAATAA+TGG | - | chr4_3:34597621-34597640 | Msa0638950:intron | 30.0% | |
| GGAGTATATAACATAAACTC+AGG | + | chr4_3:34597814-34597833 | None:intergenic | 30.0% | |
| ! | ATCGTTTGTTTGTTAGAAAC+TGG | - | chr4_3:34598132-34598151 | Msa0638950:intron | 30.0% |
| CTCATAGATATCCATATAAG+TGG | + | chr4_3:34598290-34598309 | None:intergenic | 30.0% | |
| AAACATGTGTATCATGCTAT+TGG | + | chr4_3:34598320-34598339 | None:intergenic | 30.0% | |
| ! | GGGTAATCAACAAAATTTTG+AGG | - | chr4_3:34598362-34598381 | Msa0638950:intron | 30.0% |
| CACATTGCTTCAATATAACT+CGG | + | chr4_3:34598580-34598599 | None:intergenic | 30.0% | |
| AGTTATATTGAAGCAATGTG+AGG | - | chr4_3:34598580-34598599 | Msa0638950:intron | 30.0% | |
| !! | TAATGGGTTTGGATAATTGT+TGG | - | chr4_3:34598712-34598731 | Msa0638950:intron | 30.0% |
| CTCAACTATTCGTTACTTAA+TGG | + | chr4_3:34598767-34598786 | None:intergenic | 30.0% | |
| GAATTCTTCAAAGGAATCAA+AGG | - | chr4_3:34599120-34599139 | Msa0638950:intron | 30.0% | |
| TTACTATGTGCTAACTAACT+CGG | + | chr4_3:34599398-34599417 | None:intergenic | 30.0% | |
| ACTATCCACGCAAAAAAAAA+AGG | + | chr4_3:34599486-34599505 | None:intergenic | 30.0% | |
| ! | AGGATTTGATAGTTTACAGT+AGG | - | chr4_3:34599950-34599969 | Msa0638950:intron | 30.0% |
| ! | GGATTTGATAGTTTACAGTA+GGG | - | chr4_3:34599951-34599970 | Msa0638950:intron | 30.0% |
| ! | GATTTGATAGTTTACAGTAG+GGG | - | chr4_3:34599952-34599971 | Msa0638950:intron | 30.0% |
| !!! | TTTGCGGTTTTATTTTGGAT+CGG | + | chr4_3:34599992-34600011 | None:intergenic | 30.0% |
| !!! | ATCGATTTGCGGTTTTATTT+TGG | + | chr4_3:34599997-34600016 | None:intergenic | 30.0% |
| ! | CGCAAAAAACCGAATATTTT+TGG | - | chr4_3:34600034-34600053 | Msa0638950:intron | 30.0% |
| !!! | CGAATATTTTTGGATGTGTT+TGG | - | chr4_3:34600044-34600063 | Msa0638950:intron | 30.0% |
| !! | TTTTGAAAAACCGCTATGAT+CGG | - | chr4_3:34600074-34600093 | Msa0638950:intron | 30.0% |
| !! | TAAAATCTACTTTTGCGGTT+CGG | + | chr4_3:34600142-34600161 | None:intergenic | 30.0% |
| !!! | GTTTATTTTGGATCGGTTTT+TGG | + | chr4_3:34600409-34600428 | None:intergenic | 30.0% |
| !!! | ATATGCGGTTTATTTTGGAT+CGG | + | chr4_3:34600416-34600435 | None:intergenic | 30.0% |
| TAAACCGCATATATTTGGAT+CGG | - | chr4_3:34600424-34600443 | Msa0638950:intron | 30.0% | |
| AATGGAATGTCTGTAAACTA+GGG | + | chr4_3:34600565-34600584 | None:intergenic | 30.0% | |
| TAATGGAATGTCTGTAAACT+AGG | + | chr4_3:34600566-34600585 | None:intergenic | 30.0% | |
| !! | ATGAAATAATGATAGTGGTG+AGG | - | chr4_3:34600590-34600609 | Msa0638950:intron | 30.0% |
| TTAATCATTTCCCTTATCTG+CGG | + | chr4_3:34600748-34600767 | None:intergenic | 30.0% | |
| CAGATAAGGGAAATGATTAA+AGG | - | chr4_3:34600748-34600767 | Msa0638950:intron | 30.0% | |
| ! | ATCTTGAAACTGAAGTTGAT+TGG | - | chr4_3:34601152-34601171 | Msa0638950:CDS | 30.0% |
| TTTGTAGTCCTAAAGAAAGT+GGG | + | chr4_3:34601214-34601233 | None:intergenic | 30.0% | |
| ATTTGTAGTCCTAAAGAAAG+TGG | + | chr4_3:34601215-34601234 | None:intergenic | 30.0% | |
| TGAAAAAGCCACTATGATGA+AGG | + | chr4_3:34597486-34597505 | None:intergenic | 35.0% | |
| ATTGAATTGTGTGTGGACAA+AGG | + | chr4_3:34597512-34597531 | None:intergenic | 35.0% | |
| ! | GATCGTTTGTTAGAATCTAG+TGG | - | chr4_3:34597535-34597554 | Msa0638950:intron | 35.0% |
| TAGTGGCCAAAATTCCTTAA+AGG | - | chr4_3:34597552-34597571 | Msa0638950:intron | 35.0% | |
| AGTGGCCAAAATTCCTTAAA+GGG | - | chr4_3:34597553-34597572 | Msa0638950:intron | 35.0% | |
| AATGAAATCAACCCACCAAT+AGG | + | chr4_3:34597673-34597692 | None:intergenic | 35.0% | |
| TCAGAAACTATGCATGTAAC+AGG | + | chr4_3:34597745-34597764 | None:intergenic | 35.0% | |
| GTTACATGCATAGTTTCTGA+TGG | - | chr4_3:34597745-34597764 | Msa0638950:intron | 35.0% | |
| ! | TTATATACTCCTAGTGGATG+TGG | - | chr4_3:34597823-34597842 | Msa0638950:intron | 35.0% |
| TTTGATGAGCTTCAGAAAAG+AGG | - | chr4_3:34597865-34597884 | Msa0638950:intron | 35.0% | |
| !! | AGAGGCTATTTTCCACTTAA+AGG | - | chr4_3:34597883-34597902 | Msa0638950:intron | 35.0% |
| CTCATGCATGTGGAAAATAA+TGG | + | chr4_3:34598050-34598069 | None:intergenic | 35.0% | |
| TGATTTGATTCTCATGCATG+TGG | + | chr4_3:34598060-34598079 | None:intergenic | 35.0% | |
| ATATAAGTGGCATGAGATGT+TGG | + | chr4_3:34598277-34598296 | None:intergenic | 35.0% | |
| ! | AACATCTCATGCCACTTATA+TGG | - | chr4_3:34598276-34598295 | Msa0638950:intron | 35.0% |
| ATAAAATCCGTCATGGACAA+GGG | + | chr4_3:34598833-34598852 | None:intergenic | 35.0% | |
| TTAGGTTCAAGCAGTTATTC+AGG | - | chr4_3:34599014-34599033 | Msa0638950:intron | 35.0% | |
| GAGAACATGCATTCGATTAT+TGG | - | chr4_3:34599036-34599055 | Msa0638950:intron | 35.0% | |
| ! | GTGCATAGTAATCTGAAGTT+CGG | + | chr4_3:34599100-34599119 | None:intergenic | 35.0% |
| ACTATGCACGAATTCTTCAA+AGG | - | chr4_3:34599111-34599130 | Msa0638950:intron | 35.0% | |
| TACTATGTGCTAACTAACTC+GGG | + | chr4_3:34599397-34599416 | None:intergenic | 35.0% | |
| CATAGTAAACCCTTTGACAT+TGG | - | chr4_3:34599410-34599429 | Msa0638950:intron | 35.0% | |
| CGATTATGTCCAATGTCAAA+GGG | + | chr4_3:34599422-34599441 | None:intergenic | 35.0% | |
| ACGATTATGTCCAATGTCAA+AGG | + | chr4_3:34599423-34599442 | None:intergenic | 35.0% | |
| !! | TAGATGCTTTGTGATTTGGT+AGG | - | chr4_3:34599566-34599585 | Msa0638950:intron | 35.0% |
| !! | AGATGCTTTGTGATTTGGTA+GGG | - | chr4_3:34599567-34599586 | Msa0638950:intron | 35.0% |
| TGACACTTTATTAGGATGAC+CGG | - | chr4_3:34599624-34599643 | Msa0638950:intron | 35.0% | |
| !!! | GGTTTTATTTTGGATCGGTT+TGG | + | chr4_3:34599987-34600006 | None:intergenic | 35.0% |
| !!! | GGTTTTTTTGGATCGATTTG+CGG | + | chr4_3:34600008-34600027 | None:intergenic | 35.0% |
| ! | TTTGCGGTTTTCGGTTTTTT+TGG | + | chr4_3:34600020-34600039 | None:intergenic | 35.0% |
| !!! | ATTCGGTTTTTTGCGGTTTT+CGG | + | chr4_3:34600029-34600048 | None:intergenic | 35.0% |
| CTATCCGATCCAAATATATG+CGG | + | chr4_3:34600431-34600450 | None:intergenic | 35.0% | |
| ATATTTGGATCGGATAGGAT+CGG | - | chr4_3:34600434-34600453 | Msa0638950:intron | 35.0% | |
| ATGGAATGTCTGTAAACTAG+GGG | + | chr4_3:34600564-34600583 | None:intergenic | 35.0% | |
| GATGATGAAATTTGCAGCAT+GGG | + | chr4_3:34600664-34600683 | None:intergenic | 35.0% | |
| ! | TGATGATGAAATTTGCAGCA+TGG | + | chr4_3:34600665-34600684 | None:intergenic | 35.0% |
| AGTTAGTAGTGTGGTATAGT+GGG | + | chr4_3:34600716-34600735 | None:intergenic | 35.0% | |
| TAGTTAGTAGTGTGGTATAG+TGG | + | chr4_3:34600717-34600736 | None:intergenic | 35.0% | |
| TAATCATTTCCCTTATCTGC+GGG | + | chr4_3:34600747-34600766 | None:intergenic | 35.0% | |
| ! | ATTTTCCACTTCACAATGCT+TGG | + | chr4_3:34600846-34600865 | None:intergenic | 35.0% |
| AGCATTGTGAAGTGGAAAAT+TGG | - | chr4_3:34600846-34600865 | Msa0638950:CDS | 35.0% | |
| GTGAAGTGGAAAATTGGATT+TGG | - | chr4_3:34600852-34600871 | Msa0638950:CDS | 35.0% | |
| AAGTGGAAAATTGGATTTGG+AGG | - | chr4_3:34600855-34600874 | Msa0638950:CDS | 35.0% | |
| ACATTTGATATACTCAAGCG+CGG | + | chr4_3:34600894-34600913 | None:intergenic | 35.0% | |
| GTCACTCTGAGTATACTTAT+AGG | - | chr4_3:34600912-34600931 | Msa0638950:CDS | 35.0% | |
| ATGATACAACAGAGAATCAG+TGG | - | chr4_3:34601239-34601258 | Msa0638950:CDS | 35.0% | |
| GCAAAACTCCTTCATCATAG+TGG | - | chr4_3:34597475-34597494 | Msa0638950:CDS | 40.0% | |
| !! | GAAGGCCCTTTAAGGAATTT+TGG | + | chr4_3:34597561-34597580 | None:intergenic | 40.0% |
| AAAATCTGGAAGGCCCTTTA+AGG | + | chr4_3:34597569-34597588 | None:intergenic | 40.0% | |
| ! | TAAAGGGCCTTCCAGATTTT+CGG | - | chr4_3:34597569-34597588 | Msa0638950:intron | 40.0% |
| TCTCAAACCGAAAATCTGGA+AGG | + | chr4_3:34597579-34597598 | None:intergenic | 40.0% | |
| ATGGTCTCAAACCGAAAATC+TGG | + | chr4_3:34597583-34597602 | None:intergenic | 40.0% | |
| !!! | ATTCCACGTTGATTTTCTGG+TGG | + | chr4_3:34597619-34597638 | None:intergenic | 40.0% |
| TTGCATTGCACAAATCTGGT+AGG | + | chr4_3:34597648-34597667 | None:intergenic | 40.0% | |
| TTGTGCAATGCAATGCCTAT+TGG | - | chr4_3:34597655-34597674 | Msa0638950:intron | 40.0% | |
| GAAACTATGCATGTAACAGG+AGG | + | chr4_3:34597742-34597761 | None:intergenic | 40.0% | |
| TCACTTAACTCACCCACAAT+GGG | + | chr4_3:34598249-34598268 | None:intergenic | 40.0% | |
| TTCACTTAACTCACCCACAA+TGG | + | chr4_3:34598250-34598269 | None:intergenic | 40.0% | |
| TTACCCGCAGAGATACATAT+GGG | + | chr4_3:34598348-34598367 | None:intergenic | 40.0% | |
| ATTACCCGCAGAGATACATA+TGG | + | chr4_3:34598349-34598368 | None:intergenic | 40.0% | |
| !! | GAGGAGCGTGTAGATATTTT+AGG | - | chr4_3:34598381-34598400 | Msa0638950:intron | 40.0% |
| TGAAGCAATGTGAGGTTTGA+AGG | - | chr4_3:34598588-34598607 | Msa0638950:intron | 40.0% | |
| GAAGCAATGTGAGGTTTGAA+GGG | - | chr4_3:34598589-34598608 | Msa0638950:intron | 40.0% | |
| AATGTGAGGTTTGAAGGGAA+AGG | - | chr4_3:34598594-34598613 | Msa0638950:intron | 40.0% | |
| ! | GAAGGGTGTAAATAGTATCG+AGG | - | chr4_3:34598616-34598635 | Msa0638950:intron | 40.0% |
| ACAAGGGGTGAGTATCTTAA+TGG | + | chr4_3:34598817-34598836 | None:intergenic | 40.0% | |
| TAAAATCCGTCATGGACAAG+GGG | + | chr4_3:34598832-34598851 | None:intergenic | 40.0% | |
| GATAAAATCCGTCATGGACA+AGG | + | chr4_3:34598834-34598853 | None:intergenic | 40.0% | |
| TCTATATTTGCGTGCATTCG+CGG | + | chr4_3:34598856-34598875 | None:intergenic | 40.0% | |
| TAACTAACTCGGGTAAAGGT+CGG | + | chr4_3:34599387-34599406 | None:intergenic | 40.0% | |
| !! | GATGCTTTGTGATTTGGTAG+GGG | - | chr4_3:34599568-34599587 | Msa0638950:intron | 40.0% |
| TCGCAAGCACAATTCATGAT+AGG | - | chr4_3:34599930-34599949 | Msa0638950:intron | 40.0% | |
| AAAAACCGCTATGATCGGTT+CGG | - | chr4_3:34600079-34600098 | Msa0638950:intron | 40.0% | |
| !!! | GGTTTGGTTCGGTTTTGAAA+AGG | + | chr4_3:34600116-34600135 | None:intergenic | 40.0% |
| CGCATATATTTGGATCGGAT+AGG | - | chr4_3:34600429-34600448 | Msa0638950:intron | 40.0% | |
| !! | AAATTATGTGCGGTTCGGTT+CGG | + | chr4_3:34600484-34600503 | None:intergenic | 40.0% |
| ATGAAATTTGCAGCATGGGA+AGG | + | chr4_3:34600660-34600679 | None:intergenic | 40.0% | |
| TTAGTAGTGTGGTATAGTGG+GGG | + | chr4_3:34600714-34600733 | None:intergenic | 40.0% | |
| GTTAGTAGTGTGGTATAGTG+GGG | + | chr4_3:34600715-34600734 | None:intergenic | 40.0% | |
| GTACAAGGTAGTTAGTAGTG+TGG | + | chr4_3:34600725-34600744 | None:intergenic | 40.0% | |
| GCCTAACGACAAAACTCAAA+CGG | - | chr4_3:34600819-34600838 | Msa0638950:CDS | 40.0% | |
| !! | TCCGTTTGAGTTTTGTCGTT+AGG | + | chr4_3:34600823-34600842 | None:intergenic | 40.0% |
| CATTTGATATACTCAAGCGC+GGG | + | chr4_3:34600893-34600912 | None:intergenic | 40.0% | |
| GATGAGAAGAATGTGTGTGA+TGG | - | chr4_3:34601127-34601146 | Msa0638950:CDS | 40.0% | |
| AGTTTAACTCCTCTCATTGC+TGG | + | chr4_3:34601181-34601200 | None:intergenic | 40.0% | |
| AAGACCTTCCCACTTTCTTT+AGG | - | chr4_3:34601203-34601222 | Msa0638950:CDS | 40.0% | |
| TAGTCCTAAAGAAAGTGGGA+AGG | + | chr4_3:34601210-34601229 | None:intergenic | 40.0% | |
| AGTGGAACACAAACCACATG+GGG | + | chr4_3:34597418-34597437 | None:intergenic | 45.0% | |
| GAGTGGAACACAAACCACAT+GGG | + | chr4_3:34597419-34597438 | None:intergenic | 45.0% | |
| GGTTTATGTGACCTTGTGCT+GGG | + | chr4_3:34597441-34597460 | None:intergenic | 45.0% | |
| ! | CGGTTTGAGACCATATCTGA+TGG | - | chr4_3:34597589-34597608 | Msa0638950:intron | 45.0% |
| TGGTGGCAAACCATCAGATA+TGG | + | chr4_3:34597602-34597621 | None:intergenic | 45.0% | |
| TTGCCACCAGAAAATCAACG+TGG | - | chr4_3:34597613-34597632 | Msa0638950:intron | 45.0% | |
| GGCATTGCATTGCACAAATC+TGG | + | chr4_3:34597652-34597671 | None:intergenic | 45.0% | |
| TGCAATGCAATGCCTATTGG+TGG | - | chr4_3:34597658-34597677 | Msa0638950:intron | 45.0% | |
| GCAATGCAATGCCTATTGGT+GGG | - | chr4_3:34597659-34597678 | Msa0638950:intron | 45.0% | |
| ! | TCCTAGTGGATGTGGTATGT+TGG | - | chr4_3:34597831-34597850 | Msa0638950:intron | 45.0% |
| ! | CCTAGTGGATGTGGTATGTT+GGG | - | chr4_3:34597832-34597851 | Msa0638950:intron | 45.0% |
| !! | ACAATGGGTTGCATCACTGA+AGG | + | chr4_3:34598234-34598253 | None:intergenic | 45.0% |
| TTCAGTGATGCAACCCATTG+TGG | - | chr4_3:34598233-34598252 | Msa0638950:intron | 45.0% | |
| TCAGTGATGCAACCCATTGT+GGG | - | chr4_3:34598234-34598253 | Msa0638950:intron | 45.0% | |
| TAAGTGGCATGAGATGTTGG+AGG | + | chr4_3:34598274-34598293 | None:intergenic | 45.0% | |
| TCCACCCATATGTATCTCTG+CGG | - | chr4_3:34598341-34598360 | Msa0638950:intron | 45.0% | |
| TGAGGTTTGAAGGGAAAGGA+AGG | - | chr4_3:34598598-34598617 | Msa0638950:intron | 45.0% | |
| GAGGTTTGAAGGGAAAGGAA+GGG | - | chr4_3:34598599-34598618 | Msa0638950:intron | 45.0% | |
| TTCGCGGATAAAATCCGTCA+TGG | + | chr4_3:34598840-34598859 | None:intergenic | 45.0% | |
| GTGCTAACTAACTCGGGTAA+AGG | + | chr4_3:34599391-34599410 | None:intergenic | 45.0% | |
| GAAATCCGAACCGATCATAG+CGG | + | chr4_3:34600087-34600106 | None:intergenic | 45.0% | |
| !! | GCTATGATCGGTTCGGATTT+CGG | - | chr4_3:34600086-34600105 | Msa0638950:intron | 45.0% |
| !!! | TCTACTTTTGCGGTTCGGTT+CGG | + | chr4_3:34600137-34600156 | None:intergenic | 45.0% |
| ! | TAGTATGGTGTGTCGCTAAG+TGG | + | chr4_3:34600628-34600647 | None:intergenic | 45.0% |
| !! | GGAAGGCATCTAGTCTAGTA+TGG | + | chr4_3:34600643-34600662 | None:intergenic | 45.0% |
| ! | TAGTAGTGTGGTATAGTGGG+GGG | + | chr4_3:34600713-34600732 | None:intergenic | 45.0% |
| TACCTTGTACCCGCAGATAA+GGG | - | chr4_3:34600735-34600754 | Msa0638950:intron | 45.0% | |
| GATTGGATACCAGCAATGAG+AGG | - | chr4_3:34601169-34601188 | Msa0638950:CDS | 45.0% | |
| !!! | ATTCTTATTTATTATTTTAT+TGG | - | chr4_3:34600162-34600181 | Msa0638950:intron | 5.0% |
| CAAACCACATGGGGTCTTGA+TGG | + | chr4_3:34597409-34597428 | None:intergenic | 50.0% | |
| GGAGTGGAACACAAACCACA+TGG | + | chr4_3:34597420-34597439 | None:intergenic | 50.0% | |
| GGGTTTATGTGACCTTGTGC+TGG | + | chr4_3:34597442-34597461 | None:intergenic | 50.0% | |
| CCCAACATACCACATCCACT+AGG | + | chr4_3:34597835-34597854 | None:intergenic | 50.0% | |
| CCACCCATATGTATCTCTGC+GGG | - | chr4_3:34598342-34598361 | Msa0638950:intron | 50.0% | |
| TACTCACCCCTTGTCCATGA+CGG | - | chr4_3:34598823-34598842 | Msa0638950:intron | 50.0% | |
| !!! | TTTTGCGGTTCGGTTCGGTT+TGG | + | chr4_3:34600132-34600151 | None:intergenic | 50.0% |
| !!! | CGGTTTGGATCGGTTTTGAG+GGG | + | chr4_3:34600530-34600549 | None:intergenic | 50.0% |
| !!! | CCGGTTTGGATCGGTTTTGA+GGG | + | chr4_3:34600531-34600550 | None:intergenic | 50.0% |
| CCCTCAAAACCGATCCAAAC+CGG | - | chr4_3:34600528-34600547 | Msa0638950:intron | 50.0% | |
| !!! | TCCGGTTTGGATCGGTTTTG+AGG | + | chr4_3:34600532-34600551 | None:intergenic | 50.0% |
| !! | CTGTAAACTAGGGGTGTTCG+CGG | + | chr4_3:34600555-34600574 | None:intergenic | 50.0% |
| CTACCTTGTACCCGCAGATA+AGG | - | chr4_3:34600734-34600753 | Msa0638950:intron | 50.0% | |
| TTCCCTTATCTGCGGGTACA+AGG | + | chr4_3:34600740-34600759 | None:intergenic | 50.0% | |
| ! | ACGGACCAAGCATTGTGAAG+TGG | - | chr4_3:34600838-34600857 | Msa0638950:CDS | 50.0% |
| GGAACCATCAAGACCCCATG+TGG | - | chr4_3:34597402-34597421 | Msa0638950:CDS | 55.0% | |
| TGTGTTCCACTCCCAGCACA+AGG | - | chr4_3:34597427-34597446 | Msa0638950:CDS | 55.0% | |
| ATGTGACCTTGTGCTGGGAG+TGG | + | chr4_3:34597436-34597455 | None:intergenic | 55.0% | |
| CCCGCAGAGATACATATGGG+TGG | + | chr4_3:34598345-34598364 | None:intergenic | 55.0% | |
| !! | CGGTTCGGTTCGGTTTGGTT+CGG | + | chr4_3:34600127-34600146 | None:intergenic | 55.0% |
| !! | ATGTGCGGTTCGGTTCGGTT+TGG | + | chr4_3:34600479-34600498 | None:intergenic | 55.0% |
| !! | GTTCGCGGTCCGGTTTGGAT+CGG | + | chr4_3:34600540-34600559 | None:intergenic | 60.0% |
| !! | AACTAGGGGTGTTCGCGGTC+CGG | + | chr4_3:34600550-34600569 | None:intergenic | 60.0% |
| GGGGCGAATGTAGTGTGGTG+TGG | + | chr4_3:34600694-34600713 | None:intergenic | 60.0% | |
| AGTGGGGGGCGAATGTAGTG+TGG | + | chr4_3:34600699-34600718 | None:intergenic | 60.0% | |
| ! | GGGGTGTTCGCGGTCCGGTT+TGG | + | chr4_3:34600545-34600564 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34597400 | 34601273 | 34597400 | ID=Msa0638950;Name=Msa0638950 |
| chr4_3 | mRNA | 34597400 | 34601273 | 34597400 | ID=Msa0638950-mRNA-1;Parent=Msa0638950;Name=Msa0638950-mRNA-1;_AED=0.28;_eAED=0.30;_QI=0|0|0|1|1|1|2|0|216 |
| chr4_3 | exon | 34600769 | 34601273 | 34600769 | ID=Msa0638950-mRNA-1:exon:8079;Parent=Msa0638950-mRNA-1 |
| chr4_3 | exon | 34597400 | 34597545 | 34597400 | ID=Msa0638950-mRNA-1:exon:8078;Parent=Msa0638950-mRNA-1 |
| chr4_3 | CDS | 34600769 | 34601273 | 34600769 | ID=Msa0638950-mRNA-1:cds;Parent=Msa0638950-mRNA-1 |
| chr4_3 | CDS | 34597400 | 34597545 | 34597400 | ID=Msa0638950-mRNA-1:cds;Parent=Msa0638950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
