AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0560300


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560300 MtrunA17_Chr4g0050341 88.382 482 13 1 1 439 13 494 0.0 871
Msa0560300 MtrunA17_Chr5g0426431 51.392 467 182 6 7 432 12 474 1.12e-166 477
Msa0560300 MtrunA17_Chr3g0092641 50.321 467 187 6 6 431 11 473 4.85e-163 468
Msa0560300 MtrunA17_Chr3g0118671 47.558 471 202 4 7 435 6 473 4.17e-160 460
Msa0560300 MtrunA17_Chr6g0454191 49.682 471 193 4 5 432 8 477 1.53e-159 459
Msa0560300 MtrunA17_Chr3g0118771 47.992 473 201 4 5 435 19 488 6.69e-158 455
Msa0560300 MtrunA17_Chr6g0454341 47.872 470 200 4 5 432 8 474 4.98e-157 452
Msa0560300 MtrunA17_Chr3g0078841 46.444 478 211 4 4 439 7 481 7.18e-156 450
Msa0560300 MtrunA17_Chr8g0359821 49.145 468 197 3 5 432 8 474 1.46e-155 449
Msa0560300 MtrunA17_Chr3g0118691 45.798 476 215 2 5 439 13 486 4.85e-155 448
Msa0560300 MtrunA17_Chr3g0118711 46.526 475 211 2 5 438 11 483 1.73e-154 446
Msa0560300 MtrunA17_Chr8g0336331 47.122 469 204 4 5 432 8 473 9.43e-154 444
Msa0560300 MtrunA17_Chr6g0454181 47.234 470 205 4 5 432 8 476 1.30e-151 439
Msa0560300 MtrunA17_Chr3g0118701 44.989 469 215 2 5 432 13 479 2.24e-151 438
Msa0560300 MtrunA17_Chr6g0454401 48.517 472 197 7 5 432 8 477 3.16e-151 438
Msa0560300 MtrunA17_Chr6g0454301 48.511 470 197 4 5 432 261 727 1.15e-150 445
Msa0560300 MtrunA17_Chr6g0454301 59.184 196 79 1 237 432 32 226 2.95e-76 252
Msa0560300 MtrunA17_Chr6g0454331 46.429 476 210 4 1 432 1 475 5.54e-150 435
Msa0560300 MtrunA17_Chr6g0453951 45.912 477 215 4 5 439 55 530 5.33e-149 434
Msa0560300 MtrunA17_Chr2g0278711 45.435 471 208 5 5 432 9 473 3.50e-148 430
Msa0560300 MtrunA17_Chr6g0454261 46.203 474 212 4 1 432 4 476 2.18e-147 428
Msa0560300 MtrunA17_Chr6g0454361 48.511 470 199 4 5 432 9 477 5.26e-147 427
Msa0560300 MtrunA17_Chr6g0454291 48.101 474 203 4 1 432 1 473 6.07e-146 424
Msa0560300 MtrunA17_Chr6g0454321 46.436 463 203 5 5 425 8 467 4.44e-145 428
Msa0560300 MtrunA17_Chr6g0454321 43.919 148 80 2 1 145 498 645 1.35e-27 115
Msa0560300 MtrunA17_Chr3g0118751 45.551 472 185 4 5 435 4 444 1.27e-144 420
Msa0560300 MtrunA17_Chr6g0454211 48.101 474 203 4 1 432 291 763 6.28e-144 429
Msa0560300 MtrunA17_Chr6g0454211 33.333 348 108 6 125 432 1 264 4.82e-51 184
Msa0560300 MtrunA17_Chr6g0454201 48.085 470 201 4 5 432 9 477 1.82e-143 418
Msa0560300 MtrunA17_Chr6g0454141 45.745 470 212 4 5 432 8 476 7.07e-143 417
Msa0560300 MtrunA17_Chr6g0453961 46.072 471 210 5 5 432 17 486 2.42e-141 413
Msa0560300 MtrunA17_Chr3g0118661 45.416 469 212 3 5 432 11 476 5.91e-140 409
Msa0560300 MtrunA17_Chr6g0454351 46.272 456 213 7 5 432 10 461 3.14e-136 399
Msa0560300 MtrunA17_Chr6g0454151 46.316 475 208 7 1 432 4 474 6.85e-136 399
Msa0560300 MtrunA17_Chr6g0454121 45.319 470 215 4 4 432 7 475 1.06e-135 398
Msa0560300 MtrunA17_Chr6g0452771 46.383 470 209 4 5 432 8 476 1.37e-135 398
Msa0560300 MtrunA17_Chr6g0454131 44.654 477 222 4 4 439 7 482 3.89e-134 394
Msa0560300 MtrunA17_Chr7g0217881 44.654 477 203 5 5 439 8 465 1.07e-129 382
Msa0560300 MtrunA17_Chr5g0423981 43.096 478 192 7 5 439 8 448 2.16e-124 368
Msa0560300 MtrunA17_Chr8g0355011 49.541 327 161 3 113 439 43 365 1.75e-113 337
Msa0560300 MtrunA17_Chr6g0454251 44.192 396 178 4 1 354 1 395 9.91e-113 337
Msa0560300 MtrunA17_Chr5g0426401 49.026 308 113 4 167 432 2 307 4.67e-98 296
Msa0560300 MtrunA17_Chr3g0118721 47.279 294 112 3 188 439 1 293 9.99e-91 276
Msa0560300 MtrunA17_Chr3g0112771 34.707 461 240 9 8 432 13 448 3.64e-89 278
Msa0560300 MtrunA17_Chr6g0454271 48.239 284 107 2 188 432 1 283 2.35e-87 268
Msa0560300 MtrunA17_Chr3g0112761 33.761 468 245 10 7 435 8 449 1.83e-86 271
Msa0560300 MtrunA17_Chr5g0412131 33.888 481 243 12 4 432 9 466 2.07e-83 264
Msa0560300 MtrunA17_Chr6g0454221 61.224 196 75 1 237 432 33 227 3.78e-83 258
Msa0560300 MtrunA17_Chr5g0412101 32.854 487 253 11 2 436 7 471 8.40e-81 257
Msa0560300 MtrunA17_Chr6g0454171 40.294 340 151 5 125 439 1 313 4.14e-79 248
Msa0560300 MtrunA17_Chr4g0032331 33.691 466 246 12 5 432 6 446 7.69e-78 249
Msa0560300 MtrunA17_Chr5g0412111 31.743 482 255 12 6 436 4 462 2.89e-72 234
Msa0560300 MtrunA17_Chr8g0336271 44.017 234 128 2 5 237 8 239 1.52e-64 209
Msa0560300 MtrunA17_Chr6g0454371 56.000 175 76 1 265 439 1 174 3.23e-64 204
Msa0560300 MtrunA17_Chr1g0207931 30.631 444 257 12 7 436 92 498 9.65e-64 213
Msa0560300 MtrunA17_Chr5g0393591 30.853 457 252 14 7 436 17 436 1.66e-61 206
Msa0560300 MtrunA17_Chr3g0098111 28.184 479 278 12 7 436 9 470 3.04e-61 206
Msa0560300 MtrunA17_Chr6g0464921 30.380 474 258 10 6 435 10 455 5.35e-61 205
Msa0560300 MtrunA17_Chr1g0207971 27.500 480 271 10 7 439 8 457 2.63e-60 203
Msa0560300 MtrunA17_Chr1g0207981 31.435 474 260 12 7 432 13 469 3.37e-60 203
Msa0560300 MtrunA17_Chr1g0161351 29.339 484 274 11 3 436 33 498 6.73e-60 203
Msa0560300 MtrunA17_Chr7g0250001 30.021 473 256 12 4 432 3 444 1.64e-59 201
Msa0560300 MtrunA17_Chr1g0207861 30.316 475 265 12 7 432 8 465 1.78e-59 201
Msa0560300 MtrunA17_Chr8g0380531 29.916 478 264 10 4 436 7 458 7.37e-59 199
Msa0560300 MtrunA17_Chr7g0249981 30.398 477 255 11 4 435 22 466 1.24e-58 199
Msa0560300 MtrunA17_Chr6g0464881 28.810 479 264 11 6 436 10 459 1.50e-57 196
Msa0560300 MtrunA17_Chr6g0454231 43.966 232 126 2 5 234 248 477 1.71e-57 196
Msa0560300 MtrunA17_Chr6g0454231 45.178 197 68 3 237 432 58 215 2.17e-47 169
Msa0560300 MtrunA17_Chr1g0207951 27.292 480 267 10 7 436 124 571 2.22e-57 204
Msa0560300 MtrunA17_Chr1g0207951 28.970 466 259 11 7 424 656 1097 3.09e-54 194
Msa0560300 MtrunA17_Chr8g0336261 63.504 137 49 1 265 401 1 136 4.64e-57 184
Msa0560300 MtrunA17_Chr5g0414331 28.870 478 248 9 7 432 13 450 5.77e-57 194
Msa0560300 MtrunA17_Chr8g0347281 31.211 487 249 14 6 436 17 473 1.11e-56 194
Msa0560300 MtrunA17_Chr6g0464841 29.810 473 259 10 7 435 11 454 2.05e-56 193
Msa0560300 MtrunA17_Chr6g0464861 29.747 474 259 11 6 435 10 453 3.24e-56 192
Msa0560300 MtrunA17_Chr4g0011051 31.493 489 249 16 7 427 9 479 3.67e-56 193
Msa0560300 MtrunA17_Chr5g0426411 54.217 166 73 2 4 168 9 172 4.01e-56 183
Msa0560300 MtrunA17_Chr7g0218811 30.568 458 257 13 6 429 14 444 4.13e-56 192
Msa0560300 MtrunA17_Chr7g0218831 29.130 460 265 13 6 432 5 436 4.97e-56 191
Msa0560300 MtrunA17_Chr8g0365811 27.366 486 281 11 8 439 496 963 2.79e-55 197
Msa0560300 MtrunA17_Chr8g0365811 26.531 490 286 14 7 439 9 481 2.99e-43 162
Msa0560300 MtrunA17_Chr7g0265041 31.515 495 252 14 6 432 10 485 3.82e-55 190
Msa0560300 MtrunA17_Chr4g0053501 28.807 486 267 13 2 435 6 464 9.93e-55 189
Msa0560300 MtrunA17_Chr5g0414321 28.571 476 252 9 7 432 11 448 2.22e-54 187
Msa0560300 MtrunA17_Chr3g0121991 30.498 482 261 16 7 432 79 542 5.05e-54 189
Msa0560300 MtrunA17_Chr4g0053321 29.498 478 262 13 8 435 27 479 5.50e-54 187
Msa0560300 MtrunA17_Chr6g0464871 28.541 473 265 10 7 435 23 466 5.69e-54 187
Msa0560300 MtrunA17_Chr7g0232401 28.692 474 259 14 7 424 6 456 9.49e-54 186
Msa0560300 MtrunA17_Chr1g0207831 28.306 484 264 10 8 436 9 464 2.40e-53 185
Msa0560300 MtrunA17_Chr7g0218841 28.918 453 276 12 6 432 5 437 2.41e-53 184
Msa0560300 MtrunA17_Chr7g0218791 27.133 457 279 12 6 428 4 440 2.63e-53 184
Msa0560300 MtrunA17_Chr4g0044511 28.131 487 272 15 7 436 40 505 2.75e-53 186
Msa0560300 MtrunA17_Chr7g0218821 30.022 453 261 14 6 419 4 439 2.81e-53 184
Msa0560300 MtrunA17_Chr8g0373301 30.081 492 263 19 1 436 1 467 3.41e-53 184
Msa0560300 MtrunA17_Chr8g0347271 30.328 488 252 15 6 436 18 474 4.28e-53 184
Msa0560300 MtrunA17_Chr6g0462571 28.810 479 260 16 8 431 5 457 1.01e-52 183
Msa0560300 MtrunA17_Chr5g0401721 29.424 469 261 14 8 424 9 459 1.15e-52 183
Msa0560300 MtrunA17_Chr7g0275511 30.658 486 255 16 6 434 14 474 1.25e-52 183
Msa0560300 MtrunA17_Chr6g0462531 28.211 475 273 12 8 432 5 461 1.74e-51 180
Msa0560300 MtrunA17_Chr7g0265101 31.185 481 274 13 5 432 7 483 1.81e-51 181
Msa0560300 MtrunA17_Chr7g0265151 30.938 501 256 17 1 432 1 480 5.43e-51 179
Msa0560300 MtrunA17_Chr6g0449931 30.847 496 250 19 4 436 3 468 6.44e-51 179
Msa0560300 MtrunA17_Chr5g0431441 27.941 476 262 12 7 432 18 462 1.30e-50 177
Msa0560300 MtrunA17_Chr7g0265051 30.600 500 246 18 7 432 9 481 3.29e-50 177
Msa0560300 MtrunA17_Chr7g0243771 28.659 492 274 12 4 436 3 476 4.46e-50 177
Msa0560300 MtrunA17_Chr8g0361371 29.317 498 259 15 1 434 1 469 6.66e-50 176
Msa0560300 MtrunA17_Chr5g0419761 28.717 491 268 15 7 432 9 482 1.28e-49 176
Msa0560300 MtrunA17_Chr7g0243931 29.615 493 266 12 7 436 17 491 1.76e-49 175
Msa0560300 MtrunA17_Chr5g0440421 28.893 488 250 17 5 418 8 472 8.41e-49 173
Msa0560300 MtrunA17_Chr8g0366391 27.664 488 277 13 7 436 9 478 9.17e-49 173
Msa0560300 MtrunA17_Chr7g0243801 28.283 495 278 11 1 436 1 477 1.24e-48 173
Msa0560300 MtrunA17_Chr6g0453981 38.865 229 100 2 125 314 1 228 1.35e-48 166
Msa0560300 MtrunA17_Chr8g0335141 29.472 492 258 18 5 436 7 469 1.99e-48 172
Msa0560300 MtrunA17_Chr7g0232391 29.498 478 264 16 7 432 6 462 2.21e-48 172
Msa0560300 MtrunA17_Chr6g0462541 28.266 467 266 12 8 424 5 452 4.99e-48 171
Msa0560300 MtrunA17_Chr7g0249931 29.362 470 249 14 7 427 40 475 6.13e-48 171
Msa0560300 MtrunA17_Chr7g0243681 27.439 492 273 12 7 436 11 480 7.31e-48 171
Msa0560300 MtrunA17_Chr4g0044501 28.542 487 269 14 7 435 10 475 8.33e-48 171
Msa0560300 MtrunA17_Chr6g0462521 27.521 476 261 13 8 432 5 447 9.30e-48 170
Msa0560300 MtrunA17_Chr7g0243951 28.195 493 272 13 7 436 11 484 1.24e-47 170
Msa0560300 MtrunA17_Chr7g0275681 30.461 499 243 19 6 432 11 477 2.83e-47 169
Msa0560300 MtrunA17_Chr3g0122001 28.455 492 258 16 7 432 486 949 3.62e-47 174
Msa0560300 MtrunA17_Chr3g0122001 28.169 497 254 15 7 432 6 470 1.65e-45 169
Msa0560300 MtrunA17_Chr5g0431361 28.931 477 250 15 7 432 12 450 3.65e-47 168
Msa0560300 MtrunA17_Chr8g0339461 31.608 367 189 9 115 429 109 465 4.51e-47 168
Msa0560300 MtrunA17_Chr8g0336741 28.454 485 267 13 5 434 11 470 4.57e-47 168
Msa0560300 MtrunA17_Chr4g0060511 29.400 500 261 15 7 436 11 488 5.63e-47 169
Msa0560300 MtrunA17_Chr8g0336731 29.730 481 263 16 7 434 31 489 5.97e-47 168
Msa0560300 MtrunA17_Chr7g0243631 26.477 491 284 9 7 436 13 487 7.23e-47 168
Msa0560300 MtrunA17_Chr5g0431371 29.263 475 248 14 7 432 10 445 7.87e-47 167
Msa0560300 MtrunA17_Chr5g0419771 29.352 494 267 16 4 432 33 509 7.92e-47 169
Msa0560300 MtrunA17_Chr6g0486251 28.630 489 255 18 8 434 7 463 2.46e-46 166
Msa0560300 MtrunA17_Chr6g0486201 28.630 489 255 18 8 434 7 463 2.46e-46 166
Msa0560300 MtrunA17_Chr8g0377941 28.361 476 269 12 1 427 1 453 2.81e-46 166
Msa0560300 MtrunA17_Chr7g0232411 28.216 482 265 15 7 432 6 462 4.75e-46 166
Msa0560300 MtrunA17_Chr5g0431401 28.810 479 245 14 7 432 10 445 6.64e-46 164
Msa0560300 MtrunA17_Chr8g0339441 30.317 442 255 14 7 424 6 418 1.08e-45 164
Msa0560300 MtrunA17_Chr8g0334851 28.257 499 261 16 4 436 3 470 1.24e-45 164
Msa0560300 MtrunA17_Chr8g0339631 29.455 404 221 12 72 424 67 457 1.25e-45 164
Msa0560300 MtrunA17_Chr8g0336651 28.750 480 268 14 7 434 6 463 1.27e-45 169
Msa0560300 MtrunA17_Chr8g0336651 28.834 489 264 15 7 436 781 1244 4.21e-44 165
Msa0560300 MtrunA17_Chr8g0336651 36.866 217 113 3 225 436 578 775 2.54e-34 136
Msa0560300 MtrunA17_Chr7g0232331 27.778 486 271 17 7 436 6 467 1.45e-45 164
Msa0560300 MtrunA17_Chr8g0377921 27.273 484 270 16 6 432 2 460 1.72e-45 164
Msa0560300 MtrunA17_Chr6g0462551 25.949 474 283 13 8 431 5 460 2.28e-45 164
Msa0560300 MtrunA17_Chr7g0265141 28.144 501 258 16 2 427 4 477 3.10e-45 164
Msa0560300 MtrunA17_Chr8g0339451 31.401 414 203 13 72 424 59 452 4.90e-45 162
Msa0560300 MtrunA17_Chr8g0336691 28.252 492 261 14 7 436 13 474 5.45e-45 167
Msa0560300 MtrunA17_Chr8g0336691 29.328 491 257 19 7 436 919 1380 2.43e-43 163
Msa0560300 MtrunA17_Chr8g0336691 28.330 473 257 17 7 436 480 913 9.30e-39 149
Msa0560300 MtrunA17_Chr4g0066281 27.902 491 256 15 11 439 16 470 7.82e-45 162
Msa0560300 MtrunA17_Chr6g0459311 28.834 489 254 18 8 434 14 470 1.04e-44 162
Msa0560300 MtrunA17_Chr1g0153451 28.067 481 273 15 7 436 6 464 1.46e-44 161
Msa0560300 MtrunA17_Chr8g0335161 28.310 491 264 15 5 435 4 466 1.71e-44 161
Msa0560300 MtrunA17_Chr5g0442561 27.000 500 260 17 5 432 3 469 1.95e-44 161
Msa0560300 MtrunA17_Chr5g0448521 28.687 495 247 17 8 432 6 464 2.58e-44 160
Msa0560300 MtrunA17_Chr5g0429711 28.216 482 254 15 8 432 12 458 2.68e-44 160
Msa0560300 MtrunA17_Chr6g0454281 44.149 188 102 3 5 189 8 195 5.46e-44 153
Msa0560300 MtrunA17_Chr7g0243871 28.283 495 270 15 2 436 4 473 1.34e-43 159
Msa0560300 MtrunA17_Chr5g0431421 28.512 484 240 15 7 432 10 445 1.49e-43 158
Msa0560300 MtrunA17_Chr5g0442541 27.912 498 251 16 5 432 3 462 2.26e-43 158
Msa0560300 MtrunA17_Chr4g0066221 28.926 484 269 17 11 436 15 481 3.71e-43 158
Msa0560300 MtrunA17_Chr7g0243861 28.195 493 273 10 7 436 14 488 5.31e-43 158
Msa0560300 MtrunA17_Chr1g0159551 26.464 461 282 17 12 435 19 459 6.23e-43 157
Msa0560300 MtrunA17_Chr8g0339601 34.185 313 151 9 164 423 8 318 7.13e-43 154
Msa0560300 MtrunA17_Chr5g0442521 25.749 501 268 15 5 432 3 472 8.39e-43 157
Msa0560300 MtrunA17_Chr3g0106231 27.521 476 250 16 7 432 18 448 1.01e-42 156
Msa0560300 MtrunA17_Chr5g0442581 27.400 500 274 15 5 438 3 479 1.21e-42 157
Msa0560300 MtrunA17_Chr4g0072771 26.087 460 284 12 7 432 25 462 1.24e-42 156
Msa0560300 MtrunA17_Chr7g0243761 27.310 487 255 13 7 436 11 455 2.25e-42 155
Msa0560300 MtrunA17_Chr4g0014061 27.439 492 267 16 4 432 5 469 2.27e-42 155
Msa0560300 MtrunA17_Chr5g0442601 26.559 497 270 14 5 432 402 872 2.41e-42 159
Msa0560300 MtrunA17_Chr5g0442601 29.329 283 167 5 116 376 62 333 4.18e-28 117
Msa0560300 MtrunA17_Chr7g0232311 29.253 482 262 17 5 432 4 460 2.83e-42 155
Msa0560300 MtrunA17_Chr8g0370941 27.291 502 253 16 7 426 8 479 3.13e-42 156
Msa0560300 MtrunA17_Chr5g0420801 28.033 478 283 15 1 436 1 459 3.22e-42 155
Msa0560300 MtrunA17_Chr5g0442491 27.383 493 253 17 5 424 3 463 4.33e-42 155
Msa0560300 MtrunA17_Chr2g0302961 28.719 484 265 15 8 435 6 465 4.74e-42 154
Msa0560300 MtrunA17_Chr4g0066201 27.813 471 278 17 11 436 22 475 5.67e-42 155
Msa0560300 MtrunA17_Chr5g0429681 29.645 479 262 18 5 432 42 496 6.75e-42 155
Msa0560300 MtrunA17_Chr3g0079731 28.310 491 266 13 8 432 7 477 8.29e-42 154
Msa0560300 MtrunA17_Chr7g0243781 27.273 484 282 11 7 436 9 476 9.67e-42 154
Msa0560300 MtrunA17_Chr7g0235051 29.348 460 261 18 7 427 11 445 1.07e-41 154
Msa0560300 MtrunA17_Chr1g0173121 26.115 471 282 15 8 435 15 462 1.12e-41 153
Msa0560300 MtrunA17_Chr2g0302991 34.256 289 139 6 196 435 176 462 1.25e-41 153
Msa0560300 MtrunA17_Chr5g0448551 25.227 440 270 10 1 403 1 418 1.34e-41 153
Msa0560300 MtrunA17_Chr8g0334831 29.352 494 259 17 8 434 7 477 1.44e-41 154
Msa0560300 MtrunA17_Chr7g0249961 36.742 264 140 6 176 435 19 259 1.72e-41 148
Msa0560300 MtrunA17_Chr1g0179901 27.455 499 271 17 4 432 13 490 1.83e-41 154
Msa0560300 MtrunA17_Chr7g0232341 27.198 489 270 18 7 436 6 467 1.85e-41 153
Msa0560300 MtrunA17_Chr4g0044521 39.535 215 107 5 238 432 252 463 3.15e-41 152
Msa0560300 MtrunA17_Chr4g0042931 28.689 488 260 18 7 436 7 464 4.48e-41 152
Msa0560300 MtrunA17_Chr1g0165701 27.044 477 292 12 8 436 16 484 5.67e-41 152
Msa0560300 MtrunA17_Chr8g0374901 32.056 287 134 5 211 436 193 479 1.82e-40 150
Msa0560300 MtrunA17_Chr1g0207881 27.578 446 239 14 7 436 8 385 3.18e-40 148
Msa0560300 MtrunA17_Chr2g0294921 29.065 492 280 20 1 436 153 631 3.36e-40 152
Msa0560300 MtrunA17_Chr5g0401851 26.253 499 271 12 9 436 12 484 4.14e-40 150
Msa0560300 MtrunA17_Chr6g0463851 27.218 496 264 16 11 436 15 483 4.44e-40 149
Msa0560300 MtrunA17_Chr7g0241801 28.505 428 264 14 2 412 4 406 6.12e-40 148
Msa0560300 MtrunA17_Chr1g0153461 38.028 213 116 4 240 436 1 213 6.23e-40 142
Msa0560300 MtrunA17_Chr4g0066131 27.234 470 287 15 11 436 17 475 1.13e-39 148
Msa0560300 MtrunA17_Chr4g0066261 28.958 480 275 19 11 436 15 482 3.50e-39 147
Msa0560300 MtrunA17_Chr6g0453941 35.211 213 98 1 131 303 59 271 5.28e-39 142
Msa0560300 MtrunA17_Chr8g0334861 27.721 487 267 19 5 434 4 462 6.65e-39 146
Msa0560300 MtrunA17_Chr8g0382021 27.837 467 271 18 12 432 39 485 7.62e-39 146
Msa0560300 MtrunA17_Chr4g0072761 27.851 456 278 17 7 432 15 449 2.62e-38 144
Msa0560300 MtrunA17_Chr8g0374941 38.333 240 118 7 226 436 1180 1418 3.90e-38 147
Msa0560300 MtrunA17_Chr8g0374941 30.712 267 124 5 212 417 660 926 5.89e-33 132
Msa0560300 MtrunA17_Chr8g0374941 36.036 222 112 8 226 418 242 462 5.09e-31 126
Msa0560300 MtrunA17_Chr7g0241781 28.111 434 256 15 3 412 5 406 4.33e-38 143
Msa0560300 MtrunA17_Chr5g0416741 24.409 508 268 10 8 436 14 484 6.69e-38 144
Msa0560300 MtrunA17_Chr5g0428081 26.105 475 293 13 11 436 15 480 8.48e-38 143
Msa0560300 MtrunA17_Chr4g0066151 26.931 479 279 16 11 437 22 481 9.66e-38 143
Msa0560300 MtrunA17_Chr5g0403641 37.864 206 107 3 243 427 289 494 1.08e-37 143
Msa0560300 MtrunA17_Chr4g0066171 24.846 487 271 13 11 436 25 477 1.42e-37 142
Msa0560300 MtrunA17_Chr2g0294931 25.407 492 283 11 8 436 12 482 2.06e-37 142
Msa0560300 MtrunA17_Chr8g0374931 26.423 492 272 14 11 436 15 482 2.12e-37 142
Msa0560300 MtrunA17_Chr4g0044481 30.366 382 219 11 7 364 27 385 5.83e-37 140
Msa0560300 MtrunA17_Chr8g0355221 35.246 244 126 6 213 436 256 487 7.71e-37 141
Msa0560300 MtrunA17_Chr5g0416821 29.474 475 274 19 8 436 15 474 8.74e-37 140
Msa0560300 MtrunA17_Chr2g0329111 27.887 459 286 16 5 421 4 459 2.06e-36 139
Msa0560300 MtrunA17_Chr7g0265111 27.309 498 266 18 7 432 39 512 3.67e-36 139
Msa0560300 MtrunA17_Chr8g0374971 30.345 290 141 6 208 436 192 481 5.12e-36 138
Msa0560300 MtrunA17_Chr7g0243711 39.189 222 117 4 231 436 98 317 1.53e-35 134
Msa0560300 MtrunA17_Chr4g0042891 27.536 483 274 15 7 436 7 466 3.81e-35 135
Msa0560300 MtrunA17_Chr6g0463861 25.895 475 286 16 11 435 15 473 7.18e-35 135
Msa0560300 MtrunA17_Chr5g0442511 24.843 479 286 14 5 438 47 496 9.81e-35 135
Msa0560300 MtrunA17_Chr7g0243851 37.674 215 108 5 243 436 234 443 1.31e-33 131
Msa0560300 MtrunA17_Chr8g0350881 33.891 239 130 6 226 436 243 481 1.61e-33 131
Msa0560300 MtrunA17_Chr7g0218311 25.349 501 284 13 1 436 9 484 6.47e-33 130
Msa0560300 MtrunA17_Chr8g0369341 25.988 481 299 14 1 436 1 469 1.44e-32 128
Msa0560300 MtrunA17_Chr7g0243911 38.350 206 110 4 221 410 1 205 1.50e-32 123
Msa0560300 MtrunA17_Chr8g0361411 25.259 483 270 17 7 435 8 453 2.46e-32 127
Msa0560300 MtrunA17_Chr2g0307961 26.458 480 282 13 5 435 11 468 7.82e-32 126
Msa0560300 MtrunA17_Chr5g0432731 34.826 201 109 4 243 432 104 293 1.96e-31 122
Msa0560300 MtrunA17_Chr3g0079711 38.251 183 94 4 269 432 3 185 2.23e-31 119
Msa0560300 MtrunA17_Chr5g0410941 24.297 498 292 12 1 436 16 490 3.77e-31 125
Msa0560300 MtrunA17_Chr6g0463891 25.610 492 284 14 8 436 13 485 8.93e-31 124
Msa0560300 MtrunA17_Chr7g0243611 40.909 154 87 2 232 383 127 278 9.18e-31 120
Msa0560300 MtrunA17_Chr7g0243811 28.389 391 207 13 19 364 1 363 2.58e-29 118
Msa0560300 MtrunA17_Chr2g0294941 36.041 197 105 4 242 417 165 361 5.65e-29 117
Msa0560300 MtrunA17_Chr3g0106251 27.273 297 159 8 179 432 8 290 4.36e-28 113
Msa0560300 MtrunA17_Chr5g0409591 35.204 196 103 5 237 413 271 461 4.69e-27 113
Msa0560300 MtrunA17_Chr2g0278721 25.870 460 267 16 7 413 517 955 1.81e-26 112
Msa0560300 MtrunA17_Chr2g0278721 22.907 454 277 15 7 412 15 443 1.78e-23 103
Msa0560300 MtrunA17_Chr6g0482061 24.274 482 275 14 7 423 11 467 1.59e-25 108
Msa0560300 MtrunA17_Chr5g0431431 27.807 374 188 15 7 364 10 317 1.82e-25 106
Msa0560300 MtrunA17_Chr7g0232351 26.196 397 217 13 7 352 6 377 2.73e-25 106
Msa0560300 MtrunA17_Chr8g0337381 44.094 127 65 2 314 436 2 126 6.01e-25 99.4
Msa0560300 MtrunA17_Chr8g0336251 36.257 171 103 3 244 409 270 439 1.10e-24 105
Msa0560300 MtrunA17_Chr6g0464091 24.681 470 261 18 7 409 18 461 1.26e-24 105
Msa0560300 MtrunA17_Chr8g0336321 36.257 171 103 3 244 409 270 439 2.03e-24 105
Msa0560300 MtrunA17_Chr3g0118731 44.737 114 61 1 59 172 28 139 3.06e-24 98.6
Msa0560300 MtrunA17_Chr7g0231631 33.824 204 129 4 236 436 60 260 3.48e-24 101
Msa0560300 MtrunA17_Chr6g0466841 23.026 456 269 17 7 412 18 441 3.64e-24 104
Msa0560300 MtrunA17_Chr6g0466831 23.465 456 267 17 7 412 18 441 7.11e-24 103
Msa0560300 MtrunA17_Chr5g0427561 48.864 88 45 0 352 439 1 88 1.43e-23 94.4
Msa0560300 MtrunA17_Chr5g0427571 34.884 172 106 3 243 409 103 273 2.62e-23 99.8
Msa0560300 MtrunA17_Chr8g0367221 25.561 446 278 13 7 411 798 1230 3.79e-23 102
Msa0560300 MtrunA17_Chr8g0367221 35.772 123 77 2 245 365 271 393 1.42e-17 85.9
Msa0560300 MtrunA17_Chr8g0367221 30.508 177 109 4 245 411 1548 1720 3.34e-17 84.7
Msa0560300 MtrunA17_Chr6g0454391 66.129 62 21 0 330 391 13 74 1.08e-22 92.8
Msa0560300 MtrunA17_Chr4g0066141 38.732 142 72 3 310 436 211 352 2.63e-22 97.8
Msa0560300 MtrunA17_Chr8g0357361 37.662 154 82 4 212 364 97 237 4.73e-22 95.1
Msa0560300 MtrunA17_Chr6g0454381 41.441 111 65 0 125 235 1 111 6.17e-22 91.7
Msa0560300 MtrunA17_Chr6g0454111 31.847 157 67 2 169 285 27 183 1.42e-20 89.0
Msa0560300 MtrunA17_Chr2g0302851 21.995 441 292 14 7 412 16 439 2.37e-20 93.2
Msa0560300 MtrunA17_Chr3g0118741 61.404 57 22 0 5 61 4 60 1.85e-19 82.4
Msa0560300 MtrunA17_Chr3g0092031 30.952 168 102 6 245 404 6 167 7.33e-18 81.6
Msa0560300 MtrunA17_Chr2g0278741 29.474 190 116 7 235 412 342 525 2.70e-17 84.3
Msa0560300 MtrunA17_Chr4g0069611 29.670 182 112 6 240 412 264 438 2.24e-16 80.9
Msa0560300 MtrunA17_Chr4g0029151 22.323 439 286 16 4 405 17 437 3.77e-16 80.5
Msa0560300 MtrunA17_Chr4g0040691 24.570 407 272 15 1 381 1 398 5.86e-16 79.7
Msa0560300 MtrunA17_Chr4g0029131 23.596 445 281 17 4 409 9 433 7.97e-16 79.7
Msa0560300 MtrunA17_Chr4g0040711 24.450 409 266 18 1 379 1 396 8.04e-16 79.3
Msa0560300 MtrunA17_Chr4g0039881 27.228 202 127 7 225 412 220 415 1.01e-15 79.0
Msa0560300 MtrunA17_Chr2g0319801 27.891 441 262 22 3 404 4 427 1.44e-14 75.5
Msa0560300 MtrunA17_Chr1g0196851 22.926 458 271 19 7 412 49 476 2.12e-14 75.1
Msa0560300 MtrunA17_Chr2g0283041 27.059 170 116 3 243 404 256 425 2.52e-14 74.7
Msa0560300 MtrunA17_Chr7g0267931 69.231 39 11 1 10 47 23 61 1.85e-12 62.4
Msa0560300 MtrunA17_Chr7g0243731 38.356 73 45 0 306 378 1 73 4.74e-12 61.6
Msa0560300 MtrunA17_Chr2g0319731 25.285 439 276 20 3 404 21 444 8.56e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0560300 AT1G22380.1 49.266 477 197 4 5 439 11 484 6.56e-164 471
Msa0560300 AT1G22400.1 48.734 474 197 5 5 435 11 481 6.34e-163 468
Msa0560300 AT1G22360.1 49.049 473 196 4 5 435 8 477 8.60e-162 465
Msa0560300 AT1G22340.1 47.689 476 205 3 5 438 11 484 1.01e-158 457
Msa0560300 AT1G22370.2 50.106 473 186 5 5 435 11 475 5.51e-157 453
Msa0560300 AT1G22360.2 47.569 473 191 5 5 435 8 465 1.82e-152 441
Msa0560300 AT1G78270.1 47.046 474 204 6 5 435 11 480 3.65e-150 436
Msa0560300 AT1G22370.1 48.845 303 112 3 175 435 4 305 1.60e-86 267
Msa0560300 AT3G11340.1 32.762 467 245 13 4 432 6 441 6.93e-83 262
Msa0560300 AT3G46660.1 35.021 474 235 12 2 432 9 452 1.11e-81 259
Msa0560300 AT3G46670.1 34.542 469 250 10 2 436 4 449 1.28e-81 259
Msa0560300 AT5G38040.1 34.989 463 228 13 15 435 18 449 5.48e-81 257
Msa0560300 AT5G59590.1 34.549 466 236 13 7 432 10 446 1.92e-80 256
Msa0560300 AT5G59580.1 32.623 469 250 9 7 437 9 449 1.70e-79 253
Msa0560300 AT5G38010.1 34.591 477 235 17 5 435 8 453 6.84e-77 246
Msa0560300 AT3G46690.1 35.652 460 240 9 7 432 9 446 1.60e-76 246
Msa0560300 AT5G05870.1 33.333 468 256 7 7 437 8 456 5.62e-76 244
Msa0560300 AT3G46680.1 34.632 462 246 10 5 432 7 446 4.16e-75 242
Msa0560300 AT3G55700.1 33.906 466 242 12 7 432 8 447 2.13e-74 240
Msa0560300 AT3G46700.1 34.402 468 246 11 5 438 7 447 1.74e-73 238
Msa0560300 AT3G46650.1 34.416 462 226 11 1 427 5 424 2.22e-73 237
Msa0560300 AT5G05900.1 31.602 462 253 9 8 432 9 444 8.63e-73 236
Msa0560300 AT5G05880.1 31.087 460 261 8 7 432 8 445 4.35e-71 231
Msa0560300 AT3G46720.1 34.409 465 246 12 5 438 7 443 6.47e-71 231
Msa0560300 AT5G05860.1 32.104 461 253 10 7 432 9 444 1.15e-70 230
Msa0560300 AT3G21560.1 29.569 487 267 9 3 435 8 472 1.30e-68 226
Msa0560300 AT2G36970.1 28.721 477 282 9 5 436 8 471 2.15e-67 223
Msa0560300 AT2G43820.1 30.928 485 248 12 1 436 1 447 8.39e-67 220
Msa0560300 AT5G05890.1 30.621 467 258 9 7 432 8 449 2.49e-65 216
Msa0560300 AT2G43840.1 30.943 488 248 14 1 438 1 449 3.11e-65 216
Msa0560300 AT2G43840.2 30.738 488 249 14 1 438 1 449 6.45e-65 215
Msa0560300 AT3G55710.1 31.906 467 252 13 8 432 9 451 1.42e-64 215
Msa0560300 AT4G15500.1 28.778 483 273 9 1 435 3 462 7.11e-64 213
Msa0560300 AT4G15480.1 30.642 483 266 12 3 435 15 478 1.34e-63 213
Msa0560300 AT4G15490.1 29.630 486 271 12 1 435 1 466 1.58e-63 213
Msa0560300 AT2G26480.1 30.426 470 246 11 8 432 9 442 4.71e-63 211
Msa0560300 AT4G01070.1 31.187 497 258 13 1 439 1 471 2.02e-58 199
Msa0560300 AT1G05680.1 31.635 471 250 13 7 432 6 449 3.77e-58 197
Msa0560300 AT1G05675.1 31.381 478 242 12 7 432 6 449 1.29e-57 196
Msa0560300 AT2G28080.1 28.194 454 270 6 11 424 22 459 2.79e-56 193
Msa0560300 AT2G36800.1 31.717 495 247 15 7 432 12 484 3.45e-56 193
Msa0560300 AT2G31790.1 28.778 483 266 10 2 435 3 456 7.02e-56 192
Msa0560300 AT1G01420.2 32.383 491 242 18 6 436 10 470 9.99e-56 192
Msa0560300 AT1G01420.1 32.383 491 242 18 6 436 7 467 1.12e-55 192
Msa0560300 AT2G31750.1 29.938 481 261 13 2 435 3 454 1.14e-54 188
Msa0560300 AT2G23260.1 29.832 476 249 15 7 432 10 450 3.96e-54 187
Msa0560300 AT2G31750.2 29.938 481 261 13 2 435 3 454 4.96e-54 187
Msa0560300 AT2G36770.1 31.276 486 260 14 7 432 14 485 8.65e-54 187
Msa0560300 AT2G23250.1 30.043 466 247 17 11 432 2 432 5.70e-53 184
Msa0560300 AT5G66690.1 28.953 487 246 18 1 422 1 452 3.08e-52 182
Msa0560300 AT2G30140.2 29.274 468 256 13 7 432 13 447 7.89e-52 181
Msa0560300 AT2G30140.1 29.274 468 257 13 7 432 13 448 1.27e-51 180
Msa0560300 AT2G30150.2 28.184 479 267 12 1 432 1 449 2.93e-51 179
Msa0560300 AT2G16890.2 31.340 485 251 20 7 435 9 467 8.51e-51 179
Msa0560300 AT2G36790.1 31.238 509 240 15 2 432 8 484 1.58e-50 178
Msa0560300 AT2G36780.1 30.754 491 256 16 7 432 14 485 2.90e-50 177
Msa0560300 AT4G15550.1 27.975 479 279 13 3 432 9 470 6.92e-50 176
Msa0560300 AT2G36750.1 31.667 480 271 18 5 432 6 480 1.01e-49 176
Msa0560300 AT1G05560.1 28.870 478 256 13 6 432 4 448 1.51e-49 175
Msa0560300 AT1G05560.2 28.870 478 256 13 6 432 54 498 2.04e-49 176
Msa0560300 AT5G26310.1 27.254 488 265 16 1 427 1 459 7.92e-49 174
Msa0560300 AT2G30150.1 27.862 463 263 11 11 432 1 433 9.79e-49 172
Msa0560300 AT2G36760.1 29.959 484 259 12 7 427 14 480 1.14e-48 173
Msa0560300 AT5G14860.1 28.778 483 281 13 4 435 5 475 1.31e-48 173
Msa0560300 AT3G02100.1 27.601 471 273 14 5 432 11 456 1.48e-48 172
Msa0560300 AT2G29740.1 28.926 484 252 15 7 425 8 464 3.03e-48 172
Msa0560300 AT1G10400.1 30.372 484 260 16 1 432 1 459 3.65e-48 171
Msa0560300 AT1G01390.2 29.532 491 265 14 2 436 20 485 1.24e-47 171
Msa0560300 AT1G01390.1 29.532 491 265 14 2 436 3 468 1.28e-47 170
Msa0560300 AT3G53160.1 28.834 489 268 13 7 432 8 479 1.79e-47 170
Msa0560300 AT2G15480.1 29.376 497 269 14 5 439 8 484 5.99e-47 169
Msa0560300 AT3G53150.1 29.234 431 233 13 5 382 20 431 9.63e-47 169
Msa0560300 AT4G14090.1 27.872 470 269 14 5 432 11 452 1.50e-46 167
Msa0560300 AT2G15490.3 28.685 502 274 13 1 439 1 481 9.63e-46 165
Msa0560300 AT2G15490.1 28.797 507 270 15 1 439 1 484 2.17e-45 164
Msa0560300 AT2G15480.2 29.191 507 267 16 5 439 8 494 2.60e-45 164
Msa0560300 AT3G50740.1 27.439 492 275 14 1 432 1 470 5.45e-45 163
Msa0560300 AT4G34131.1 27.381 504 262 16 2 432 4 476 9.83e-45 162
Msa0560300 AT1G05530.1 27.607 489 261 13 4 435 2 454 4.99e-44 160
Msa0560300 AT5G37950.1 29.839 372 190 14 22 352 1 342 1.81e-43 156
Msa0560300 AT1G24100.1 28.692 474 267 13 7 435 11 458 2.19e-43 158
Msa0560300 AT4G34138.1 28.235 510 263 14 1 439 5 482 2.27e-43 159
Msa0560300 AT3G21780.1 28.692 474 262 15 7 424 4 457 3.70e-43 158
Msa0560300 AT4G36770.1 28.998 469 248 14 7 417 4 445 6.40e-43 157
Msa0560300 AT2G29710.1 27.061 473 264 16 8 425 6 452 9.55e-43 157
Msa0560300 AT4G15280.1 26.891 476 271 12 8 424 5 462 1.07e-42 157
Msa0560300 AT5G37950.2 28.841 371 189 12 22 352 1 336 1.15e-42 154
Msa0560300 AT3G16520.3 30.833 360 190 13 116 432 113 456 1.32e-42 156
Msa0560300 AT4G15280.2 26.891 476 271 12 8 424 37 494 1.36e-42 157
Msa0560300 AT3G21790.1 26.800 500 262 17 8 432 5 475 9.21e-42 155
Msa0560300 AT3G21760.1 26.598 485 270 11 8 425 5 470 1.20e-41 154
Msa0560300 AT1G07250.1 28.481 474 263 15 8 424 7 461 1.29e-40 151
Msa0560300 AT5G03490.1 27.802 464 288 13 6 439 18 464 1.73e-40 150
Msa0560300 AT3G16520.2 30.725 345 184 12 116 419 113 443 2.24e-40 150
Msa0560300 AT3G16520.1 30.836 347 181 13 116 419 113 443 2.94e-40 150
Msa0560300 AT3G21800.1 27.917 480 262 15 8 424 6 464 5.20e-40 149
Msa0560300 AT2G16890.3 30.090 442 228 19 7 393 9 424 5.37e-40 148
Msa0560300 AT4G34135.1 27.968 497 258 15 7 432 11 478 1.98e-39 148
Msa0560300 AT1G07260.1 29.759 373 203 10 99 425 102 461 4.10e-39 147
Msa0560300 AT5G17050.1 26.170 470 286 13 2 432 6 453 4.46e-39 147
Msa0560300 AT2G29730.1 25.800 469 275 14 8 425 6 452 5.08e-39 147
Msa0560300 AT4G15260.1 28.242 347 204 9 129 432 7 351 1.60e-38 143
Msa0560300 AT1G73880.1 26.327 471 291 12 2 432 9 463 2.93e-38 144
Msa0560300 AT2G29750.1 26.439 469 282 17 7 425 8 463 2.28e-37 142
Msa0560300 AT2G18560.1 39.409 203 107 7 241 427 166 368 2.57e-36 137
Msa0560300 AT1G07240.1 28.779 344 184 9 129 424 134 464 5.23e-36 139
Msa0560300 AT1G30530.1 24.520 469 289 14 2 432 6 447 1.22e-35 137
Msa0560300 AT2G18570.1 36.986 219 120 6 225 427 242 458 1.43e-35 137
Msa0560300 AT3G21750.1 27.443 481 259 19 7 424 4 457 2.82e-34 134
Msa0560300 AT1G51210.1 26.386 451 251 15 5 410 18 432 1.42e-33 131
Msa0560300 AT5G17040.1 25.373 469 270 15 7 432 5 436 2.05e-33 130
Msa0560300 AT5G17040.2 27.575 301 176 6 167 432 41 334 1.39e-32 126
Msa0560300 AT5G12890.1 27.536 483 273 19 2 424 5 470 6.61e-32 127
Msa0560300 AT5G17030.1 23.529 476 293 14 2 432 3 452 1.50e-31 125
Msa0560300 AT3G22250.1 23.026 456 270 10 5 405 6 435 4.85e-31 124
Msa0560300 AT5G65550.1 23.179 453 281 12 7 413 9 440 6.33e-25 107
Msa0560300 AT5G49690.1 34.831 178 102 4 240 411 262 431 1.09e-24 106
Msa0560300 AT4G01070.2 28.701 331 168 9 1 289 1 305 8.23e-24 102
Msa0560300 AT1G06000.1 25.877 456 283 18 5 435 8 433 9.95e-24 103
Msa0560300 AT2G22590.1 32.402 179 113 4 240 411 269 446 3.22e-17 84.0
Msa0560300 AT5G54010.1 22.727 418 282 13 4 395 3 405 2.92e-15 78.2
Msa0560300 AT1G64910.1 28.652 178 114 5 244 411 243 417 6.91e-15 76.6
Msa0560300 AT5G54060.1 29.439 214 142 5 201 405 223 436 7.42e-14 73.6
Msa0560300 AT5G53990.1 25.714 175 123 3 244 411 243 417 1.52e-13 72.8
Msa0560300 AT4G27570.1 21.868 439 275 11 7 405 7 417 2.79e-13 72.0
Msa0560300 AT3G29630.2 23.598 428 271 14 4 411 3 394 4.54e-13 71.2
Msa0560300 AT3G29630.1 27.841 176 119 3 244 411 245 420 1.67e-12 69.3
Msa0560300 AT4G27560.1 20.726 468 297 12 7 431 7 443 3.09e-12 68.6
Msa0560300 AT4G09500.1 22.989 435 268 18 1 411 1 392 4.04e-12 68.2
Msa0560300 AT4G09500.2 27.108 166 114 3 253 411 252 417 9.67e-12 67.0
Msa0560300 AT2G22930.1 22.096 439 292 14 1 411 1 417 3.30e-11 65.5
Msa0560300 AT2G23210.1 28.692 237 139 9 1 236 4 211 4.61e-11 63.9

Find 99 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAAATAGAGGGTTAATTT+TGG 0.161431 4_1:-59586963 Msa0560300:CDS
AAAATCTGGAAGGCCCTTTA+AGG 0.186175 4_1:+59590445 None:intergenic
TCAGTGGTTTATGTGAATTT+TGG 0.213318 4_1:-59587133 Msa0560300:CDS
GAAGGCCCTTTAAGGAATTT+TGG 0.222666 4_1:+59590453 None:intergenic
ATACCTCTTGCTCTAATTCT+TGG 0.239138 4_1:+59587326 None:intergenic
ATAGCAAATACAATTTCTTA+TGG 0.240882 4_1:-59587054 Msa0560300:CDS
TAGTGGCCAAAATTCCTTAA+AGG 0.259263 4_1:-59590459 Msa0560300:CDS
TTGAAAGAAATTGAAAATAG+AGG 0.290308 4_1:-59586974 Msa0560300:CDS
AAGACCTTCCCACTTTCTTT+AGG 0.305737 4_1:-59587438 Msa0560300:CDS
GTTCTAAGTCATTCGTCTAT+TGG 0.312394 4_1:-59586920 Msa0560300:CDS
TTATAATAACTACAATAGTT+TGG 0.323894 4_1:-59586618 Msa0560300:CDS
AGTTTAACTCCTCTCATTGC+TGG 0.329539 4_1:+59587463 None:intergenic
CTAATTCTTGGAAGGTGTTA+AGG 0.341959 4_1:+59587338 None:intergenic
AGGGTGTGCCAATGGCTTGC+TGG 0.342941 4_1:-59586847 Msa0560300:CDS
AGAAAATCAACGTGGAATAA+TGG 0.344126 4_1:-59590390 Msa0560300:CDS
ACAATTTCTTATGGGTCATT+AGG 0.359882 4_1:-59587045 Msa0560300:CDS
GGGTTTATGTGACCTTGTGC+TGG 0.367590 4_1:+59590572 None:intergenic
ATGGTCTCAAACCGAAAATC+TGG 0.368637 4_1:+59590431 None:intergenic
GGCATTGCATTGCACAAATC+TGG 0.370579 4_1:+59590362 None:intergenic
TAGCAAATACAATTTCTTAT+GGG 0.382328 4_1:-59587053 Msa0560300:CDS
CAAACCACATGGGGTCTTGA+TGG 0.389949 4_1:+59590605 None:intergenic
ATCTTGAAACTGAAGTTGAT+TGG 0.393322 4_1:-59587489 Msa0560300:CDS
GCTGAGGCTGCTACATCAAT+TGG 0.397775 4_1:-59586650 Msa0560300:CDS
TCAGAAACTATGCATGTAAC+AGG 0.403791 4_1:+59590269 None:intergenic
AGCAATTAAGAGAGTTTGCT+TGG 0.405478 4_1:-59587087 Msa0560300:CDS
GACTTAGAACTTTCTCTTGT+GGG 0.406758 4_1:+59586933 None:intergenic
GACAATGCAATGAAAGCAAA+AGG 0.408177 4_1:-59587367 Msa0560300:CDS
AGCAAACTCTCTTAATTGCT+TGG 0.418874 4_1:+59587090 None:intergenic
GAACTTATGAAGGGAGAAAA+GGG 0.419117 4_1:-59586713 Msa0560300:CDS
AGTGGCCAAAATTCCTTAAA+GGG 0.434964 4_1:-59590458 Msa0560300:CDS
AAATAAATGGTACCTTTAAG+TGG 0.441231 4_1:+59590116 None:intergenic
AATGAAATCAACCCACCAAT+AGG 0.446745 4_1:+59590341 None:intergenic
CCTAGTGGATGTGGTATGTT+GGG 0.447171 4_1:-59590179 Msa0560300:CDS
GTTAGTAGAGAGCAAGTTGA+AGG 0.447275 4_1:-59586746 Msa0560300:CDS
GTTAGTGAAGGAACTTATGA+AGG 0.454719 4_1:-59586723 Msa0560300:CDS
TTTGATGAGCTTCAGAAAAG+AGG 0.456109 4_1:-59590146 Msa0560300:CDS
GGAACTTATGAAGGGAGAAA+AGG 0.458127 4_1:-59586714 Msa0560300:CDS
TCTCCACAATCCACAAGATT+AGG 0.466903 4_1:+59587022 None:intergenic
TCCTAGTGGATGTGGTATGT+TGG 0.467606 4_1:-59590180 Msa0560300:CDS
GCAATTAAGAGAGTTTGCTT+GGG 0.473285 4_1:-59587086 Msa0560300:CDS
ATGTGACCTTGTGCTGGGAG+TGG 0.474387 4_1:+59590578 None:intergenic
AAGATGTTAACTGCATGAAT+TGG 0.478731 4_1:-59587177 Msa0560300:CDS
TGGTGGCAAACCATCAGATA+TGG 0.482278 4_1:+59590412 None:intergenic
CTAAGTCATTCGTCTATTGG+AGG 0.483525 4_1:-59586917 Msa0560300:CDS
TGAAAGAAATTGAAAATAGA+GGG 0.483790 4_1:-59586973 Msa0560300:CDS
TGCAATGCAATGCCTATTGG+TGG 0.493905 4_1:-59590353 Msa0560300:CDS
GGTCATTAGGCCTAATCTTG+TGG 0.503989 4_1:-59587032 Msa0560300:CDS
TTGTGCAATGCAATGCCTAT+TGG 0.504899 4_1:-59590356 Msa0560300:CDS
TTATATACTCCTAGTGGATG+TGG 0.516712 4_1:-59590188 Msa0560300:CDS
ATTTGTAGTCCTAAAGAAAG+TGG 0.519141 4_1:+59587429 None:intergenic
CGGTTTGAGACCATATCTGA+TGG 0.519613 4_1:-59590422 Msa0560300:CDS
GGAGTTGAAGCGTAAGGCTG+AGG 0.519621 4_1:-59586666 Msa0560300:CDS
GGTTTATGTGACCTTGTGCT+GGG 0.522722 4_1:+59590573 None:intergenic
AGGCCTAATCTTGTGGATTG+TGG 0.523446 4_1:-59587025 Msa0560300:CDS
GAGAAAAGGGGAAAGAAATG+AGG 0.536294 4_1:-59586700 Msa0560300:CDS
TTTATGCATGTAATAGATGG+GGG 0.538362 4_1:-59586793 Msa0560300:CDS
CTCTTGCTCTAATTCTTGGA+AGG 0.545946 4_1:+59587330 None:intergenic
GATCGTTTGTTAGAATCTAG+TGG 0.553615 4_1:-59590476 Msa0560300:CDS
TGACTTAGAACTTTCTCTTG+TGG 0.554270 4_1:+59586932 None:intergenic
GTTACATGCATAGTTTCTGA+TGG 0.554725 4_1:-59590266 Msa0560300:CDS
TGTTAACTGCATGAATTGGT+TGG 0.561401 4_1:-59587173 Msa0560300:CDS
GCAAAACTCCTTCATCATAG+TGG 0.565427 4_1:-59590536 Msa0560300:CDS
GAGGCTGCTACATCAATTGG+AGG 0.566944 4_1:-59586647 Msa0560300:CDS
AACATTGGAAAGCATTTGTG+AGG 0.567223 4_1:-59586867 Msa0560300:CDS
GTGTTTGGAGTTGAAGCGTA+AGG 0.572798 4_1:-59586672 Msa0560300:CDS
TTAGTAGAGAGCAAGTTGAA+GGG 0.578503 4_1:-59586745 Msa0560300:CDS
CTTCCAAGAATTAGAGCAAG+AGG 0.579129 4_1:-59587329 Msa0560300:intron
CAATTAAGAGAGTTTGCTTG+GGG 0.579519 4_1:-59587085 Msa0560300:CDS
TTAGTGAAGGAACTTATGAA+GGG 0.583016 4_1:-59586722 Msa0560300:CDS
TTTGTAGTCCTAAAGAAAGT+GGG 0.583892 4_1:+59587430 None:intergenic
ACTTAGAACTTTCTCTTGTG+GGG 0.585262 4_1:+59586934 None:intergenic
GCAAGTTGAAGGGTTAGTGA+AGG 0.597551 4_1:-59586735 Msa0560300:CDS
TTTATGTTATATACTCCTAG+TGG 0.600689 4_1:-59590194 Msa0560300:CDS
CATTTGTGAGGGTGTGCCAA+TGG 0.602356 4_1:-59586855 Msa0560300:CDS
TGTGTTCCACTCCCAGCACA+AGG 0.602729 4_1:-59590584 Msa0560300:CDS
TTGTGGATGGAACTCAACAT+TGG 0.610092 4_1:-59586882 Msa0560300:CDS
GGAGTATATAACATAAACTC+AGG 0.613312 4_1:+59590200 None:intergenic
ACAATGCAATGAAAGCAAAA+GGG 0.615271 4_1:-59587366 Msa0560300:CDS
GGAGTGGAACACAAACCACA+TGG 0.616527 4_1:+59590594 None:intergenic
GATGAGAAGAATGTGTGTGA+TGG 0.616876 4_1:-59587514 Msa0560300:CDS
TTATGCATGTAATAGATGGG+GGG 0.622004 4_1:-59586792 Msa0560300:CDS
GCAATGCAATGCCTATTGGT+GGG 0.634586 4_1:-59590352 Msa0560300:CDS
AACTTATGAAGGGAGAAAAG+GGG 0.641004 4_1:-59586712 Msa0560300:CDS
TTGCATTGCACAAATCTGGT+AGG 0.641964 4_1:+59590366 None:intergenic
CAATTACAACAGAGAATCAG+TGG 0.643961 4_1:-59587389 Msa0560300:CDS
CCCAACATACCACATCCACT+AGG 0.646468 4_1:+59590179 None:intergenic
ACATTGGAAAGCATTTGTGA+GGG 0.650032 4_1:-59586866 Msa0560300:CDS
GATCAAAATTGAATTGTGTG+TGG 0.652522 4_1:+59590495 None:intergenic
TAGTCCTAAAGAAAGTGGGA+AGG 0.653972 4_1:+59587434 None:intergenic
GATTGGATACCAGCAATGAG+AGG 0.659998 4_1:-59587472 Msa0560300:CDS
GAGTGGAACACAAACCACAT+GGG 0.660031 4_1:+59590595 None:intergenic
TCTTGTGGATTGTGGAGATG+AGG 0.665525 4_1:-59587017 Msa0560300:CDS
AGGCTGCTACATCAATTGGA+GGG 0.665948 4_1:-59586646 Msa0560300:CDS
ATTGAATTGTGTGTGGACAA+AGG 0.668033 4_1:+59590502 None:intergenic
GGAACCATCAAGACCCCATG+TGG 0.677960 4_1:-59590609 Msa0560300:CDS
TCTCAAACCGAAAATCTGGA+AGG 0.678366 4_1:+59590435 None:intergenic
AGTGGAACACAAACCACATG+GGG 0.690416 4_1:+59590596 None:intergenic
GAAACTATGCATGTAACAGG+AGG 0.691482 4_1:+59590272 None:intergenic
TTGCCACCAGAAAATCAACG+TGG 0.779000 4_1:-59590398 Msa0560300:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTATTAATTTAAATAAA+TGG + chr4_1:59587103-59587122 None:intergenic 0.0%
!! TAATTTAATTAATTTATTAA+TGG - chr4_1:59587881-59587900 Msa0560300:intron 0.0%
!! AATTTAATTAATTTATTAAT+GGG - chr4_1:59587882-59587901 Msa0560300:intron 0.0%
!!! GTAAAATTTTTCAATATAAA+AGG + chr4_1:59587131-59587150 None:intergenic 10.0%
!!! AACATTTTTTGTTAAATTTT+AGG + chr4_1:59587643-59587662 None:intergenic 10.0%
!! TTAAAAAAAAGAAAATTGTT+TGG + chr4_1:59589502-59589521 None:intergenic 10.0%
!!! TTTCTTTTTTTTAACAATAT+AGG - chr4_1:59589508-59589527 Msa0560300:intron 10.0%
!!! AAAGTTTAAAATCTAATTTT+TGG + chr4_1:59589535-59589554 None:intergenic 10.0%
!!! ATTATAAATTTGTTATCTTT+AGG - chr4_1:59589563-59589582 Msa0560300:intron 10.0%
!! TATACAAATCTTATAATATA+AGG - chr4_1:59589610-59589629 Msa0560300:intron 10.0%
!! ATACAAATCTTATAATATAA+GGG - chr4_1:59589611-59589630 Msa0560300:intron 10.0%
!!! AAATTTTTCAATATAAAAGG+AGG + chr4_1:59587128-59587147 None:intergenic 15.0%
!!! GTAACTTTTATATTTAACTA+AGG - chr4_1:59587849-59587868 Msa0560300:intron 15.0%
!!! AATTAATTTATTAATGGGTT+TGG - chr4_1:59587887-59587906 Msa0560300:intron 15.0%
!! TAATTGAATGTTAAACAATT+AGG - chr4_1:59588183-59588202 Msa0560300:intron 15.0%
!! TATTTCATGTCAAAAATTAA+AGG + chr4_1:59588375-59588394 None:intergenic 15.0%
!!! ATTTAACGTCTATTTTATTA+TGG - chr4_1:59588496-59588515 Msa0560300:intron 15.0%
!! AACTATAAAGTAAAATATAC+CGG + chr4_1:59588821-59588840 None:intergenic 15.0%
!!! TGAAATCTTGATTTTTTTTT+AGG - chr4_1:59588874-59588893 Msa0560300:intron 15.0%
!!! GAACTTTATTGATTTTTTAA+GGG - chr4_1:59589059-59589078 Msa0560300:intron 15.0%
!!! AACTTTATTGATTTTTTAAG+GGG - chr4_1:59589060-59589079 Msa0560300:intron 15.0%
!!! ATTCCATTGATTTTAATTTA+TGG - chr4_1:59589999-59590018 Msa0560300:intron 15.0%
!! TTATAATAACTACAATAGTT+TGG - chr4_1:59590585-59590604 Msa0560300:CDS 15.0%
!!! AAAAATTTTACGTATTTCTC+TGG - chr4_1:59587140-59587159 Msa0560300:CDS 20.0%
!! CTTTAATAATTAGCTACATT+AGG - chr4_1:59587283-59587302 Msa0560300:intron 20.0%
!!! CGCAATTAGTTATTTTTTAA+GGG + chr4_1:59587362-59587381 None:intergenic 20.0%
!!! ACGCAATTAGTTATTTTTTA+AGG + chr4_1:59587363-59587382 None:intergenic 20.0%
!!! CTATGGATATTATTATGTTT+TGG + chr4_1:59587691-59587710 None:intergenic 20.0%
!!! TTTTTTGGACTAAATCTAAA+AGG - chr4_1:59587827-59587846 Msa0560300:intron 20.0%
!! ATATTTGTGAGCAAAATAAA+TGG + chr4_1:59587980-59587999 None:intergenic 20.0%
!! AAGGTTAATTTCTTTGAATT+TGG + chr4_1:59588643-59588662 None:intergenic 20.0%
!!! CGAACTTTATTGATTTTTTA+AGG - chr4_1:59589058-59589077 Msa0560300:intron 20.0%
!! ATCATTATTTCATTACGTAA+TGG + chr4_1:59589153-59589172 None:intergenic 20.0%
!! ATAAGATTTGTATAAAGTGA+GGG + chr4_1:59589604-59589623 None:intergenic 20.0%
!! TATAAGATTTGTATAAAGTG+AGG + chr4_1:59589605-59589624 None:intergenic 20.0%
!!! TGAATTTTTTTTATGTAGCA+TGG + chr4_1:59589954-59589973 None:intergenic 20.0%
!! TTCAAGTACAAATAATCAAT+TGG - chr4_1:59589976-59589995 Msa0560300:intron 20.0%
!! CTTCCATAAATTAAAATCAA+TGG + chr4_1:59590005-59590024 None:intergenic 20.0%
!!! CATTGATTTTAATTTATGGA+AGG - chr4_1:59590003-59590022 Msa0560300:intron 20.0%
!! ATAGCAAATACAATTTCTTA+TGG - chr4_1:59590149-59590168 Msa0560300:CDS 20.0%
!! TAGCAAATACAATTTCTTAT+GGG - chr4_1:59590150-59590169 Msa0560300:CDS 20.0%
!! TTGAAAGAAATTGAAAATAG+AGG - chr4_1:59590229-59590248 Msa0560300:CDS 20.0%
!! TGAAAGAAATTGAAAATAGA+GGG - chr4_1:59590230-59590249 Msa0560300:CDS 20.0%
!! ATTACATGCATAAAAACAAT+TGG + chr4_1:59590404-59590423 None:intergenic 20.0%
!!! TTTTTATGCATGTAATAGAT+GGG - chr4_1:59590408-59590427 Msa0560300:CDS 20.0%
! TTTATGTTATATACTCCTAG+TGG - chr4_1:59587009-59587028 Msa0560300:CDS 25.0%
! AAATAAATGGTACCTTTAAG+TGG + chr4_1:59587090-59587109 None:intergenic 25.0%
! GAGAATCAAATCACATTATA+AGG - chr4_1:59587258-59587277 Msa0560300:intron 25.0%
!!! TAGATATTTTAGGATATCCA+TGG - chr4_1:59587577-59587596 Msa0560300:intron 25.0%
! TTAAAAGAAAATGTCATCCA+TGG + chr4_1:59587597-59587616 None:intergenic 25.0%
! TTCGTTAGAAATGATATCTA+TGG + chr4_1:59587708-59587727 None:intergenic 25.0%
!!! AATAGTATCGAGGTTTTTTT+TGG - chr4_1:59587812-59587831 Msa0560300:intron 25.0%
! TACTCGTTACTTAATGAATA+TGG + chr4_1:59587947-59587966 None:intergenic 25.0%
!!! ATTAACCTTTTTTTTTTGCG+TGG - chr4_1:59588654-59588673 Msa0560300:intron 25.0%
!! TTTTTAGATGCTTTGTGATT+TGG - chr4_1:59588737-59588756 Msa0560300:intron 25.0%
! TATCAACATGACACTTTATT+AGG - chr4_1:59588791-59588810 Msa0560300:intron 25.0%
! AATCAATAAAGTTCGAATCA+AGG + chr4_1:59589053-59589072 None:intergenic 25.0%
! ACGTAATGAAATAATGATAG+TGG - chr4_1:59589155-59589174 Msa0560300:intron 25.0%
!! TATAACCAAGGATATTTTGT+TGG - chr4_1:59589357-59589376 Msa0560300:intron 25.0%
! TTTAACCAACAAAATATCCT+TGG + chr4_1:59589365-59589384 None:intergenic 25.0%
!! ATCTTATAATATAAGGGTAC+TGG - chr4_1:59589617-59589636 Msa0560300:intron 25.0%
!! TTTTTATGTAGCATGGATAA+TGG + chr4_1:59589947-59589966 None:intergenic 25.0%
!! TGAAAATAGAGGGTTAATTT+TGG - chr4_1:59590240-59590259 Msa0560300:CDS 25.0%
!! GAAAATAGAGGGTTAATTTT+GGG - chr4_1:59590241-59590260 Msa0560300:CDS 25.0%
!! AAAATAGAGGGTTAATTTTG+GGG - chr4_1:59590242-59590261 Msa0560300:CDS 25.0%
!! GTTTTTATGCATGTAATAGA+TGG - chr4_1:59590407-59590426 Msa0560300:CDS 25.0%
!! TTTTATGCATGTAATAGATG+GGG - chr4_1:59590409-59590428 Msa0560300:CDS 25.0%
!!! GTTTTGCTAGTTTTAGCATT+GGG + chr4_1:59586654-59586673 None:intergenic 30.0%
!!! AGTTTTGCTAGTTTTAGCAT+TGG + chr4_1:59586655-59586674 None:intergenic 30.0%
GATCAAAATTGAATTGTGTG+TGG + chr4_1:59586711-59586730 None:intergenic 30.0%
!!! ATTATTCCACGTTGATTTTC+TGG + chr4_1:59586814-59586833 None:intergenic 30.0%
AGAAAATCAACGTGGAATAA+TGG - chr4_1:59586813-59586832 Msa0560300:CDS 30.0%
GGAGTATATAACATAAACTC+AGG + chr4_1:59587006-59587025 None:intergenic 30.0%
! ATCGTTTGTTTGTTAGAAAC+TGG - chr4_1:59587323-59587342 Msa0560300:intron 30.0%
CTCATAGATATCCATATAAG+TGG + chr4_1:59587481-59587500 None:intergenic 30.0%
AAACATGTGTATCATGCTAT+TGG + chr4_1:59587506-59587525 None:intergenic 30.0%
! GGGTAATCAACAAAATTTTG+AGG - chr4_1:59587548-59587567 Msa0560300:intron 30.0%
CACATTGCTTCAATATAACT+CGG + chr4_1:59587766-59587785 None:intergenic 30.0%
AGTTATATTGAAGCAATGTG+AGG - chr4_1:59587766-59587785 Msa0560300:intron 30.0%
!! TAATGGGTTTGGATAATTGT+TGG - chr4_1:59587898-59587917 Msa0560300:intron 30.0%
GTGCATAGTAATATGAAGTT+CGG + chr4_1:59588287-59588306 None:intergenic 30.0%
TTACTATGTGCTAACTAACT+CGG + chr4_1:59588574-59588593 None:intergenic 30.0%
ACTATCCACGCAAAAAAAAA+AGG + chr4_1:59588662-59588681 None:intergenic 30.0%
!! ATGAAATAATGATAGTGGTG+AGG - chr4_1:59589160-59589179 Msa0560300:intron 30.0%
TTAATCATTTCCCTTATCTG+CGG + chr4_1:59589317-59589336 None:intergenic 30.0%
CAGATAAGGGAAATGATTAA+AGG - chr4_1:59589317-59589336 Msa0560300:intron 30.0%
CCTTGGTTATATAACAAACA+TGG + chr4_1:59589348-59589367 None:intergenic 30.0%
!! CCATGTTTGTTATATAACCA+AGG - chr4_1:59589345-59589364 Msa0560300:intron 30.0%
! ATCTTGAAACTGAAGTTGAT+TGG - chr4_1:59589714-59589733 Msa0560300:intron 30.0%
TTTGTAGTCCTAAAGAAAGT+GGG + chr4_1:59589776-59589795 None:intergenic 30.0%
ATTTGTAGTCCTAAAGAAAG+TGG + chr4_1:59589777-59589796 None:intergenic 30.0%
ACAATGCAATGAAAGCAAAA+GGG - chr4_1:59589837-59589856 Msa0560300:intron 30.0%
AAGATGTTAACTGCATGAAT+TGG - chr4_1:59590026-59590045 Msa0560300:intron 30.0%
TGGTTGGATAAAAAAGACAA+AGG - chr4_1:59590046-59590065 Msa0560300:intron 30.0%
TAAAAAAGACAAAGGTTCAG+TGG - chr4_1:59590054-59590073 Msa0560300:intron 30.0%
! TCAGTGGTTTATGTGAATTT+TGG - chr4_1:59590070-59590089 Msa0560300:intron 30.0%
! CAGTGGTTTATGTGAATTTT+GGG - chr4_1:59590071-59590090 Msa0560300:intron 30.0%
ACAATTTCTTATGGGTCATT+AGG - chr4_1:59590158-59590177 Msa0560300:CDS 30.0%
!! GTTTGTTGTTCAGCAAAAAA+AGG + chr4_1:59590382-59590401 None:intergenic 30.0%
TTTATGCATGTAATAGATGG+GGG - chr4_1:59590410-59590429 Msa0560300:CDS 30.0%
TTAGTGAAGGAACTTATGAA+GGG - chr4_1:59590481-59590500 Msa0560300:CDS 30.0%
!! AGAAATGAGGAAAAAGTGTT+TGG - chr4_1:59590516-59590535 Msa0560300:CDS 30.0%
TGAAAAAGCCACTATGATGA+AGG + chr4_1:59586678-59586697 None:intergenic 35.0%
ATTGAATTGTGTGTGGACAA+AGG + chr4_1:59586704-59586723 None:intergenic 35.0%
! GATCGTTTGTTAGAATCTAG+TGG - chr4_1:59586727-59586746 Msa0560300:CDS 35.0%
TAGTGGCCAAAATTCCTTAA+AGG - chr4_1:59586744-59586763 Msa0560300:CDS 35.0%
AGTGGCCAAAATTCCTTAAA+GGG - chr4_1:59586745-59586764 Msa0560300:CDS 35.0%
AATGAAATCAACCCACCAAT+AGG + chr4_1:59586865-59586884 None:intergenic 35.0%
TCAGAAACTATGCATGTAAC+AGG + chr4_1:59586937-59586956 None:intergenic 35.0%
GTTACATGCATAGTTTCTGA+TGG - chr4_1:59586937-59586956 Msa0560300:CDS 35.0%
! TTATATACTCCTAGTGGATG+TGG - chr4_1:59587015-59587034 Msa0560300:CDS 35.0%
TTTGATGAGCTTCAGAAAAG+AGG - chr4_1:59587057-59587076 Msa0560300:CDS 35.0%
!! AGAGGCTATTTTCCACTTAA+AGG - chr4_1:59587075-59587094 Msa0560300:CDS 35.0%
CTCATGCATGTGGAAAATAA+TGG + chr4_1:59587241-59587260 None:intergenic 35.0%
TGATTTGATTCTCATGCATG+TGG + chr4_1:59587251-59587270 None:intergenic 35.0%
ATATAAGTGGCATGAGATGT+TGG + chr4_1:59587468-59587487 None:intergenic 35.0%
! AACATCTCATGCCACTTATA+TGG - chr4_1:59587467-59587486 Msa0560300:CDS 35.0%
! GAGGAACGTGTAGATATTTT+AGG - chr4_1:59587567-59587586 Msa0560300:intron 35.0%
ATAAAATCCGTCATGGACAA+GGG + chr4_1:59588019-59588038 None:intergenic 35.0%
TTAGGTTCAAGCAGTTATTC+AGG - chr4_1:59588201-59588220 Msa0560300:intron 35.0%
GAGAACATGCATTCGATTAT+TGG - chr4_1:59588223-59588242 Msa0560300:intron 35.0%
ACTATGCACGAATTCTTCAA+AGG - chr4_1:59588298-59588317 Msa0560300:intron 35.0%
CATAGTAAACCCTTTGACAT+TGG - chr4_1:59588586-59588605 Msa0560300:intron 35.0%
CGATTATGTCCAATGTCAAA+GGG + chr4_1:59588598-59588617 None:intergenic 35.0%
ACGATTATGTCCAATGTCAA+AGG + chr4_1:59588599-59588618 None:intergenic 35.0%
!! TAGATGCTTTGTGATTTGGT+AGG - chr4_1:59588741-59588760 Msa0560300:intron 35.0%
!! AGATGCTTTGTGATTTGGTA+GGG - chr4_1:59588742-59588761 Msa0560300:intron 35.0%
TGACACTTTATTAGGATGAC+CGG - chr4_1:59588799-59588818 Msa0560300:intron 35.0%
GATGATGAAATTTGCAGCAT+GGG + chr4_1:59589234-59589253 None:intergenic 35.0%
! TGATGATGAAATTTGCAGCA+TGG + chr4_1:59589235-59589254 None:intergenic 35.0%
TAATCATTTCCCTTATCTGC+GGG + chr4_1:59589316-59589335 None:intergenic 35.0%
! ATTTTCCACTTCACAATGCT+TGG + chr4_1:59589415-59589434 None:intergenic 35.0%
AGCATTGTGAAGTGGAAAAT+TGG - chr4_1:59589415-59589434 Msa0560300:intron 35.0%
ATTGTGAAGTGGAAAATTGG+AGG - chr4_1:59589418-59589437 Msa0560300:intron 35.0%
ACATTTGATATACTCAAGCG+CGG + chr4_1:59589457-59589476 None:intergenic 35.0%
GTCACTCTGAGTATACTTAT+AGG - chr4_1:59589475-59589494 Msa0560300:intron 35.0%
CAATTACAACAGAGAATCAG+TGG - chr4_1:59589814-59589833 Msa0560300:intron 35.0%
GACAATGCAATGAAAGCAAA+AGG - chr4_1:59589836-59589855 Msa0560300:intron 35.0%
!! CTAATTCTTGGAAGGTGTTA+AGG + chr4_1:59589868-59589887 None:intergenic 35.0%
ATACCTCTTGCTCTAATTCT+TGG + chr4_1:59589880-59589899 None:intergenic 35.0%
!! ATAATGGACCAATAGGGTAA+AGG + chr4_1:59589931-59589950 None:intergenic 35.0%
TGTTAACTGCATGAATTGGT+TGG - chr4_1:59590030-59590049 Msa0560300:intron 35.0%
AGCAAACTCTCTTAATTGCT+TGG + chr4_1:59590116-59590135 None:intergenic 35.0%
! AGCAATTAAGAGAGTTTGCT+TGG - chr4_1:59590116-59590135 Msa0560300:intron 35.0%
! GCAATTAAGAGAGTTTGCTT+GGG - chr4_1:59590117-59590136 Msa0560300:intron 35.0%
! CAATTAAGAGAGTTTGCTTG+GGG - chr4_1:59590118-59590137 Msa0560300:intron 35.0%
ACTTAGAACTTTCTCTTGTG+GGG + chr4_1:59590272-59590291 None:intergenic 35.0%
GACTTAGAACTTTCTCTTGT+GGG + chr4_1:59590273-59590292 None:intergenic 35.0%
TGACTTAGAACTTTCTCTTG+TGG + chr4_1:59590274-59590293 None:intergenic 35.0%
! GTTCTAAGTCATTCGTCTAT+TGG - chr4_1:59590283-59590302 Msa0560300:CDS 35.0%
!! GCTTTTTAACTCATTGTGGA+TGG - chr4_1:59590308-59590327 Msa0560300:CDS 35.0%
!! AACATTGGAAAGCATTTGTG+AGG - chr4_1:59590336-59590355 Msa0560300:CDS 35.0%
!! ACATTGGAAAGCATTTGTGA+GGG - chr4_1:59590337-59590356 Msa0560300:CDS 35.0%
TTATGCATGTAATAGATGGG+GGG - chr4_1:59590411-59590430 Msa0560300:CDS 35.0%
! TTAGTAGAGAGCAAGTTGAA+GGG - chr4_1:59590458-59590477 Msa0560300:CDS 35.0%
GTTAGTGAAGGAACTTATGA+AGG - chr4_1:59590480-59590499 Msa0560300:CDS 35.0%
GAACTTATGAAGGGAGAAAA+GGG - chr4_1:59590490-59590509 Msa0560300:CDS 35.0%
AACTTATGAAGGGAGAAAAG+GGG - chr4_1:59590491-59590510 Msa0560300:CDS 35.0%
GCAAAACTCCTTCATCATAG+TGG - chr4_1:59586667-59586686 Msa0560300:CDS 40.0%
!! GAAGGCCCTTTAAGGAATTT+TGG + chr4_1:59586753-59586772 None:intergenic 40.0%
AAAATCTGGAAGGCCCTTTA+AGG + chr4_1:59586761-59586780 None:intergenic 40.0%
! TAAAGGGCCTTCCAGATTTT+CGG - chr4_1:59586761-59586780 Msa0560300:CDS 40.0%
TCTCAAACCGAAAATCTGGA+AGG + chr4_1:59586771-59586790 None:intergenic 40.0%
ATGGTCTCAAACCGAAAATC+TGG + chr4_1:59586775-59586794 None:intergenic 40.0%
!!! ATTCCACGTTGATTTTCTGG+TGG + chr4_1:59586811-59586830 None:intergenic 40.0%
TTGCATTGCACAAATCTGGT+AGG + chr4_1:59586840-59586859 None:intergenic 40.0%
TTGTGCAATGCAATGCCTAT+TGG - chr4_1:59586847-59586866 Msa0560300:CDS 40.0%
GAAACTATGCATGTAACAGG+AGG + chr4_1:59586934-59586953 None:intergenic 40.0%
TCACTTAACTCACCCACAAT+GGG + chr4_1:59587440-59587459 None:intergenic 40.0%
TTCACTTAACTCACCCACAA+TGG + chr4_1:59587441-59587460 None:intergenic 40.0%
TTACCCGCAGAGATACATAT+GGG + chr4_1:59587534-59587553 None:intergenic 40.0%
ATTACCCGCAGAGATACATA+TGG + chr4_1:59587535-59587554 None:intergenic 40.0%
TGAAGCAATGTGAGGTTTGA+AGG - chr4_1:59587774-59587793 Msa0560300:intron 40.0%
GAAGCAATGTGAGGTTTGAA+GGG - chr4_1:59587775-59587794 Msa0560300:intron 40.0%
AATGTGAGGTTTGAAGGGAA+AGG - chr4_1:59587780-59587799 Msa0560300:intron 40.0%
! GAAGGGTGTAAATAGTATCG+AGG - chr4_1:59587802-59587821 Msa0560300:intron 40.0%
ACAAGGGGTGAGTATCTTAA+TGG + chr4_1:59588003-59588022 None:intergenic 40.0%
TAAAATCCGTCATGGACAAG+GGG + chr4_1:59588018-59588037 None:intergenic 40.0%
GATAAAATCCGTCATGGACA+AGG + chr4_1:59588020-59588039 None:intergenic 40.0%
TCTATATTTGCGTGCATTCG+CGG + chr4_1:59588042-59588061 None:intergenic 40.0%
!! GATGCTTTGTGATTTGGTAG+GGG - chr4_1:59588743-59588762 Msa0560300:intron 40.0%
TCGCAAGCACAATTCATGAT+AGG - chr4_1:59589106-59589125 Msa0560300:intron 40.0%
TAGTGTGGTATGGTATAGTG+GGG + chr4_1:59589279-59589298 None:intergenic 40.0%
GTAGTGTGGTATGGTATAGT+GGG + chr4_1:59589280-59589299 None:intergenic 40.0%
AGTAGTGTGGTATGGTATAG+TGG + chr4_1:59589281-59589300 None:intergenic 40.0%
AGGTAGTTAGTAGTGTGGTA+TGG + chr4_1:59589289-59589308 None:intergenic 40.0%
GTACAAGGTAGTTAGTAGTG+TGG + chr4_1:59589294-59589313 None:intergenic 40.0%
GCCTAACGACAAAACTCAAA+CGG - chr4_1:59589388-59589407 Msa0560300:intron 40.0%
!! TCCGTTTGAGTTTTGTCGTT+AGG + chr4_1:59589392-59589411 None:intergenic 40.0%
CATTTGATATACTCAAGCGC+GGG + chr4_1:59589456-59589475 None:intergenic 40.0%
GATGAGAAGAATGTGTGTGA+TGG - chr4_1:59589689-59589708 Msa0560300:intron 40.0%
AGTTTAACTCCTCTCATTGC+TGG + chr4_1:59589743-59589762 None:intergenic 40.0%
AAGACCTTCCCACTTTCTTT+AGG - chr4_1:59589765-59589784 Msa0560300:intron 40.0%
TAGTCCTAAAGAAAGTGGGA+AGG + chr4_1:59589772-59589791 None:intergenic 40.0%
CTCTTGCTCTAATTCTTGGA+AGG + chr4_1:59589876-59589895 None:intergenic 40.0%
CTTCCAAGAATTAGAGCAAG+AGG - chr4_1:59589874-59589893 Msa0560300:intron 40.0%
!! GCATGGATAATGGACCAATA+GGG + chr4_1:59589937-59589956 None:intergenic 40.0%
!! AGCATGGATAATGGACCAAT+AGG + chr4_1:59589938-59589957 None:intergenic 40.0%
TCTCCACAATCCACAAGATT+AGG + chr4_1:59590184-59590203 None:intergenic 40.0%
!! ATAGAGGGTTAATTTTGGGG+TGG - chr4_1:59590245-59590264 Msa0560300:CDS 40.0%
CTAAGTCATTCGTCTATTGG+AGG - chr4_1:59590286-59590305 Msa0560300:CDS 40.0%
!! GGAGGCTTTTTAACTCATTG+TGG - chr4_1:59590304-59590323 Msa0560300:CDS 40.0%
TTGTGGATGGAACTCAACAT+TGG - chr4_1:59590321-59590340 Msa0560300:CDS 40.0%
! GTTAGTAGAGAGCAAGTTGA+AGG - chr4_1:59590457-59590476 Msa0560300:CDS 40.0%
GGAACTTATGAAGGGAGAAA+AGG - chr4_1:59590489-59590508 Msa0560300:CDS 40.0%
GAGAAAAGGGGAAAGAAATG+AGG - chr4_1:59590503-59590522 Msa0560300:CDS 40.0%
AGTGGAACACAAACCACATG+GGG + chr4_1:59586610-59586629 None:intergenic 45.0%
GAGTGGAACACAAACCACAT+GGG + chr4_1:59586611-59586630 None:intergenic 45.0%
GGTTTATGTGACCTTGTGCT+GGG + chr4_1:59586633-59586652 None:intergenic 45.0%
! CGGTTTGAGACCATATCTGA+TGG - chr4_1:59586781-59586800 Msa0560300:CDS 45.0%
TGGTGGCAAACCATCAGATA+TGG + chr4_1:59586794-59586813 None:intergenic 45.0%
TTGCCACCAGAAAATCAACG+TGG - chr4_1:59586805-59586824 Msa0560300:CDS 45.0%
GGCATTGCATTGCACAAATC+TGG + chr4_1:59586844-59586863 None:intergenic 45.0%
TGCAATGCAATGCCTATTGG+TGG - chr4_1:59586850-59586869 Msa0560300:CDS 45.0%
GCAATGCAATGCCTATTGGT+GGG - chr4_1:59586851-59586870 Msa0560300:CDS 45.0%
! TCCTAGTGGATGTGGTATGT+TGG - chr4_1:59587023-59587042 Msa0560300:CDS 45.0%
! CCTAGTGGATGTGGTATGTT+GGG - chr4_1:59587024-59587043 Msa0560300:CDS 45.0%
!! ACAATGGGTTGCATCACTGA+AGG + chr4_1:59587425-59587444 None:intergenic 45.0%
TTCAGTGATGCAACCCATTG+TGG - chr4_1:59587424-59587443 Msa0560300:CDS 45.0%
TCAGTGATGCAACCCATTGT+GGG - chr4_1:59587425-59587444 Msa0560300:CDS 45.0%
TAAGTGGCATGAGATGTTGG+AGG + chr4_1:59587465-59587484 None:intergenic 45.0%
TCCACCCATATGTATCTCTG+CGG - chr4_1:59587527-59587546 Msa0560300:intron 45.0%
TGAGGTTTGAAGGGAAAGGA+AGG - chr4_1:59587784-59587803 Msa0560300:intron 45.0%
GAGGTTTGAAGGGAAAGGAA+GGG - chr4_1:59587785-59587804 Msa0560300:intron 45.0%
TTCGCGGATAAAATCCGTCA+TGG + chr4_1:59588026-59588045 None:intergenic 45.0%
! ATCATTGGTGTGTCGCTAAG+TGG + chr4_1:59589198-59589217 None:intergenic 45.0%
GGAATGTAGCGTGGTATCAT+TGG + chr4_1:59589213-59589232 None:intergenic 45.0%
AGTGTGGTATGGTATAGTGG+GGG + chr4_1:59589278-59589297 None:intergenic 45.0%
TACCTTGTACCCGCAGATAA+GGG - chr4_1:59589304-59589323 Msa0560300:intron 45.0%
GATTGGATACCAGCAATGAG+AGG - chr4_1:59589731-59589750 Msa0560300:intron 45.0%
TACCCTCACCTTTACCCTAT+TGG - chr4_1:59589920-59589939 Msa0560300:intron 45.0%
GACCAATAGGGTAAAGGTGA+GGG + chr4_1:59589925-59589944 None:intergenic 45.0%
GGTCATTAGGCCTAATCTTG+TGG - chr4_1:59590171-59590190 Msa0560300:CDS 45.0%
! AGGCCTAATCTTGTGGATTG+TGG - chr4_1:59590178-59590197 Msa0560300:CDS 45.0%
! TCTTGTGGATTGTGGAGATG+AGG - chr4_1:59590186-59590205 Msa0560300:CDS 45.0%
AAAAAAGGCCAGCAAGCCAT+TGG + chr4_1:59590367-59590386 None:intergenic 45.0%
! GCAAGTTGAAGGGTTAGTGA+AGG - chr4_1:59590468-59590487 Msa0560300:CDS 45.0%
! GTGTTTGGAGTTGAAGCGTA+AGG - chr4_1:59590531-59590550 Msa0560300:CDS 45.0%
AGGCTGCTACATCAATTGGA+GGG - chr4_1:59590557-59590576 Msa0560300:CDS 45.0%
CAAACCACATGGGGTCTTGA+TGG + chr4_1:59586601-59586620 None:intergenic 50.0%
GGAGTGGAACACAAACCACA+TGG + chr4_1:59586612-59586631 None:intergenic 50.0%
GGGTTTATGTGACCTTGTGC+TGG + chr4_1:59586634-59586653 None:intergenic 50.0%
CCCAACATACCACATCCACT+AGG + chr4_1:59587027-59587046 None:intergenic 50.0%
CCACCCATATGTATCTCTGC+GGG - chr4_1:59587528-59587547 Msa0560300:intron 50.0%
TACTCACCCCTTGTCCATGA+CGG - chr4_1:59588009-59588028 Msa0560300:intron 50.0%
CTACCTTGTACCCGCAGATA+AGG - chr4_1:59589303-59589322 Msa0560300:intron 50.0%
TTCCCTTATCTGCGGGTACA+AGG + chr4_1:59589309-59589328 None:intergenic 50.0%
! ACGGACCAAGCATTGTGAAG+TGG - chr4_1:59589407-59589426 Msa0560300:intron 50.0%
GGACCAATAGGGTAAAGGTG+AGG + chr4_1:59589926-59589945 None:intergenic 50.0%
! CATTTGTGAGGGTGTGCCAA+TGG - chr4_1:59590348-59590367 Msa0560300:CDS 50.0%
GCATGTAATAGATGGGGGGT+TGG - chr4_1:59590415-59590434 Msa0560300:CDS 50.0%
GCTGAGGCTGCTACATCAAT+TGG - chr4_1:59590553-59590572 Msa0560300:CDS 50.0%
GAGGCTGCTACATCAATTGG+AGG - chr4_1:59590556-59590575 Msa0560300:CDS 50.0%
GGAACCATCAAGACCCCATG+TGG - chr4_1:59586594-59586613 Msa0560300:CDS 55.0%
TGTGTTCCACTCCCAGCACA+AGG - chr4_1:59586619-59586638 Msa0560300:CDS 55.0%
ATGTGACCTTGTGCTGGGAG+TGG + chr4_1:59586628-59586647 None:intergenic 55.0%
CCCGCAGAGATACATATGGG+TGG + chr4_1:59587531-59587550 None:intergenic 55.0%
TGCAGCATGGGAATGTAGCG+TGG + chr4_1:59589222-59589241 None:intergenic 55.0%
TAGTGGGGGCGAATGTAGTG+TGG + chr4_1:59589264-59589283 None:intergenic 55.0%
GGAGTTGAAGCGTAAGGCTG+AGG - chr4_1:59590537-59590556 Msa0560300:CDS 55.0%
! AGGGTGTGCCAATGGCTTGC+TGG - chr4_1:59590356-59590375 Msa0560300:CDS 60.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 59586592 59590633 59586592 ID=Msa0560300;Name=Msa0560300
chr4_1 mRNA 59586592 59590633 59586592 ID=Msa0560300-mRNA-1;Parent=Msa0560300;Name=Msa0560300-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0|0|1|1|1|3|0|439
chr4_1 exon 59590129 59590633 59590129 ID=Msa0560300-mRNA-1:exon:18462;Parent=Msa0560300-mRNA-1
chr4_1 exon 59587330 59587535 59587330 ID=Msa0560300-mRNA-1:exon:18461;Parent=Msa0560300-mRNA-1
chr4_1 exon 59586592 59587200 59586592 ID=Msa0560300-mRNA-1:exon:18460;Parent=Msa0560300-mRNA-1
chr4_1 CDS 59590129 59590633 59590129 ID=Msa0560300-mRNA-1:cds;Parent=Msa0560300-mRNA-1
chr4_1 CDS 59587330 59587535 59587330 ID=Msa0560300-mRNA-1:cds;Parent=Msa0560300-mRNA-1
chr4_1 CDS 59586592 59587200 59586592 ID=Msa0560300-mRNA-1:cds;Parent=Msa0560300-mRNA-1
Gene Sequence

>Msa0560300

ATGGAACCATCAAGACCCCATGTGGTTTGTGTTCCACTCCCAGCACAAGGTCACATAAACCCAATGCTAAAACTAGCAAAACTCCTTCATCATAGTGGCTTTTTCATCACCTTTGTCCACACACAATTCAATTTTGATCGTTTGTTAGAATCTAGTGGCCAAAATTCCTTAAAGGGCCTTCCAGATTTTCGGTTTGAGACCATATCTGATGGTTTGCCACCAGAAAATCAACGTGGAATAATGGACCTACCAGATTTGTGCAATGCAATGCCTATTGGTGGGTTGATTTCATTCAGAAATCTTATAGCAAAGCTTGTTTCTTCAGAAAATGAAGATGTGCCTCCTGTTACATGCATAGTTTCTGATGGTGTAATGAATTTTACTTTGAAAGTTGCACAAGAATTCAATATTCCTGAGTTTATGTTATATACTCCTAGTGGATGTGGTATGTTGGGCTATCTTAACTTTGATGAGCTTCAGAAAAGAGGCTATTTTCCACTTAAAGATGAGAAGAATGTGTGTGATGGACATCTTGAAACTGAAGTTGATTGGATACCAGCAATGAGAGGAGTTAAACTGAAAGACCTTCCCACTTTCTTTAGGACTACAAATTCTAATGATACAATGTTCAATTACAACAGAGAATCAGTGGACAATGCAATGAAAGCAAAAGGGATCATCCTTAACACCTTCCAAGAATTAGAGCAAGAGGAAGATGTTAACTGCATGAATTGGTTGGATAAAAAAGACAAAGGTTCAGTGGTTTATGTGAATTTTGGGAGCTTAGTGATTATGACTACCAAGCAATTAAGAGAGTTTGCTTGGGGATTAGCTAATAGCAAATACAATTTCTTATGGGTCATTAGGCCTAATCTTGTGGATTGTGGAGATGAGGTGATATCAAATGATGAATTTTTGAAAGAAATTGAAAATAGAGGGTTAATTTTGGGGTGGTCCCCACAAGAGAAAGTTCTAAGTCATTCGTCTATTGGAGGCTTTTTAACTCATTGTGGATGGAACTCAACATTGGAAAGCATTTGTGAGGGTGTGCCAATGGCTTGCTGGCCTTTTTTTGCTGAACAACAAACCAATTGTTTTTATGCATGTAATAGATGGGGGGTTGGAATAGAAATTGAGAGTGATGTTAGTAGAGAGCAAGTTGAAGGGTTAGTGAAGGAACTTATGAAGGGAGAAAAGGGGAAAGAAATGAGGAAAAAGTGTTTGGAGTTGAAGCGTAAGGCTGAGGCTGCTACATCAATTGGAGGGTCTTCTTATAATAACTACAATAGTTTGGTTTTGAAATTGAAATTTGAAAAGTAG

Protein sequence

>Msa0560300

MEPSRPHVVCVPLPAQGHINPMLKLAKLLHHSGFFITFVHTQFNFDRLLESSGQNSLKGLPDFRFETISDGLPPENQRGIMDLPDLCNAMPIGGLISFRNLIAKLVSSENEDVPPVTCIVSDGVMNFTLKVAQEFNIPEFMLYTPSGCGMLGYLNFDELQKRGYFPLKDEKNVCDGHLETEVDWIPAMRGVKLKDLPTFFRTTNSNDTMFNYNRESVDNAMKAKGIILNTFQELEQEEDVNCMNWLDKKDKGSVVYVNFGSLVIMTTKQLREFAWGLANSKYNFLWVIRPNLVDCGDEVISNDEFLKEIENRGLILGWSPQEKVLSHSSIGGFLTHCGWNSTLESICEGVPMACWPFFAEQQTNCFYACNRWGVGIEIESDVSREQVEGLVKELMKGEKGKEMRKKCLELKRKAEAATSIGGSSYNNYNSLVLKLKFEK*