Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639140 | XP_013457206.1 | 95.344 | 451 | 20 | 1 | 1 | 450 | 1 | 451 | 0.0 | 861 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639140 | sp|Q8LGI2|SCPDL_ARATH | 62.921 | 445 | 160 | 3 | 7 | 447 | 8 | 451 | 0.0 | 601 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639140 | A0A072UNF4 | 95.344 | 451 | 20 | 1 | 1 | 450 | 1 | 451 | 0.0 | 861 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0619070 | Msa0639140 | 0.800636 | 1.313446e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639140 | MtrunA17_Chr4g0050551 | 95.344 | 451 | 20 | 1 | 1 | 450 | 1 | 451 | 0.0 | 861 |
| Msa0639140 | MtrunA17_Chr7g0218121 | 67.485 | 326 | 106 | 0 | 125 | 450 | 1 | 326 | 2.41e-159 | 453 |
| Msa0639140 | MtrunA17_Chr7g0218111 | 67.200 | 125 | 39 | 1 | 8 | 130 | 6 | 130 | 1.31e-53 | 176 |
| Msa0639140 | MtrunA17_Chr5g0426671 | 74.227 | 97 | 25 | 0 | 208 | 304 | 4 | 100 | 9.98e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0639140 | AT5G39410.1 | 62.921 | 445 | 160 | 3 | 7 | 447 | 8 | 451 | 0.0 | 601 |
Find 133 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAGGGTTGTTGGTAATTT+TGG | 0.124033 | 4_3:-34810902 | Msa0639140:CDS |
| CACGGGTGAGGCTGAGTTTA+TGG | 0.201773 | 4_3:-34811098 | Msa0639140:CDS |
| CCTTTGGTAGATTATTTCTT+TGG | 0.206599 | 4_3:+34808782 | None:intergenic |
| TCTGATTCTAATTCTAATTC+TGG | 0.208891 | 4_3:+34811491 | None:intergenic |
| TTTATGGATCGGGCCGAAAT+TGG | 0.216081 | 4_3:-34811082 | Msa0639140:CDS |
| TACACTCCAGGTATTGTATT+TGG | 0.232865 | 4_3:-34808751 | Msa0639140:CDS |
| TTCAATCCTGGGAGACCTTC+GGG | 0.248602 | 4_3:+34809213 | None:intergenic |
| TGGCGGGTGTTTGCCGAATA+AGG | 0.279844 | 4_3:-34810954 | Msa0639140:CDS |
| GTGGTTACATAACCCATTTC+GGG | 0.281740 | 4_3:+34808844 | None:intergenic |
| CGTGGTTACATAACCCATTT+CGG | 0.283669 | 4_3:+34808843 | None:intergenic |
| GCCAGAAGAAAATTGGTCTT+TGG | 0.291168 | 4_3:-34809302 | Msa0639140:CDS |
| AAGAATAACCGGACCCGAAA+TGG | 0.296973 | 4_3:-34808857 | Msa0639140:CDS |
| TTGAGAAAAGGAAAGTCTTT+TGG | 0.302035 | 4_3:-34809173 | Msa0639140:CDS |
| CTTTGATTGTTTCTGCTTGT+GGG | 0.311246 | 4_3:-34811030 | Msa0639140:CDS |
| CGCTCTATTATTTCTCCTTT+AGG | 0.321774 | 4_3:+34809324 | None:intergenic |
| CAAGAAAGACTTCAACAAAA+TGG | 0.339818 | 4_3:-34808715 | Msa0639140:CDS |
| AGATGCCCATTGAAGGGTTT+GGG | 0.350625 | 4_3:+34811297 | None:intergenic |
| CCAGAAGAAAATTGGTCTTT+GGG | 0.352825 | 4_3:-34809301 | Msa0639140:CDS |
| ATTCAATCCTGGGAGACCTT+CGG | 0.363455 | 4_3:+34809212 | None:intergenic |
| TGAATTCATACCACAGGCTT+TGG | 0.370631 | 4_3:+34810800 | None:intergenic |
| GCACACTGAATTAGAATTAT+CGG | 0.376740 | 4_3:+34808820 | None:intergenic |
| TCAGCAGATGCAACCGTTGT+TGG | 0.377487 | 4_3:-34809264 | Msa0639140:CDS |
| AAATTCGACATCGTAATCTT+AGG | 0.380578 | 4_3:-34811427 | Msa0639140:CDS |
| TGACTCTGTTCCTGCTGAGA+TGG | 0.386274 | 4_3:-34811005 | Msa0639140:CDS |
| GAGATGCCCATTGAAGGGTT+TGG | 0.390923 | 4_3:+34811296 | None:intergenic |
| ATAGAGCGCCAGAAGAAAAT+TGG | 0.391125 | 4_3:-34809309 | Msa0639140:CDS |
| CGAAACGGGTTGTGATTACT+TGG | 0.394903 | 4_3:-34811125 | Msa0639140:CDS |
| CTTGTTATAACTTCCATGTC+AGG | 0.395322 | 4_3:+34808877 | None:intergenic |
| GACTCTGTTCCTGCTGAGAT+GGG | 0.395699 | 4_3:-34811004 | Msa0639140:CDS |
| TACATAACCCATTTCGGGTC+CGG | 0.396081 | 4_3:+34808849 | None:intergenic |
| TCTTTGATTGTTTCTGCTTG+TGG | 0.413283 | 4_3:-34811031 | Msa0639140:CDS |
| CGTCGCTGCGTGTGTCGAAA+CGG | 0.417999 | 4_3:-34811140 | Msa0639140:CDS |
| TTAGGCTCAAAATCTCTGTT+AGG | 0.418382 | 4_3:-34809117 | Msa0639140:CDS |
| GGGATTGAAGGTGGTGGGTC+GGG | 0.422506 | 4_3:+34811271 | None:intergenic |
| GTCGCTGCGTGTGTCGAAAC+GGG | 0.423412 | 4_3:-34811139 | Msa0639140:CDS |
| AACTAACCCAAACCCTTCAA+TGG | 0.427595 | 4_3:-34811303 | Msa0639140:CDS |
| ATCGTAATCTTAGGAGCATC+AGG | 0.427703 | 4_3:-34811418 | Msa0639140:CDS |
| TCAGGACTCTCATTCAATCC+TGG | 0.430091 | 4_3:+34809201 | None:intergenic |
| GTTGAGTCGGCGATGAGAAT+GGG | 0.439131 | 4_3:+34811250 | None:intergenic |
| GAGTGTTGAGTCGGAGAAGA+GGG | 0.441939 | 4_3:-34810918 | Msa0639140:CDS |
| GTGTTTGCCGAATAAGGTTG+AGG | 0.442784 | 4_3:-34810948 | Msa0639140:CDS |
| CATTTGAAGCAGTGGGTTGG+CGG | 0.444882 | 4_3:-34810971 | Msa0639140:CDS |
| GAAGTTATAACAAGAATAAC+CGG | 0.445127 | 4_3:-34808868 | Msa0639140:CDS |
| CCTAGGCGGTTTCAGCAAGC+AGG | 0.449503 | 4_3:-34808998 | Msa0639140:CDS |
| TTTCAGCAAGCAGGGTCCTT+CGG | 0.457039 | 4_3:-34808989 | Msa0639140:CDS |
| TCTGTGAAGCCAGTACATTT+TGG | 0.458134 | 4_3:-34809147 | Msa0639140:CDS |
| GTCCTGAGACTGTTGAGAAA+AGG | 0.464392 | 4_3:-34809185 | Msa0639140:CDS |
| TCTTCCACTGGTAAATAGTC+TGG | 0.469327 | 4_3:+34808494 | None:intergenic |
| CGGGTCGAGATGCCCATTGA+AGG | 0.469471 | 4_3:+34811290 | None:intergenic |
| GAAGTACCAGTCTTGGAAGA+TGG | 0.471212 | 4_3:-34809050 | Msa0639140:CDS |
| TTATGGATCGGGCCGAAATT+GGG | 0.471296 | 4_3:-34811081 | Msa0639140:CDS |
| TGATGGGTTTCGACCAGCTA+TGG | 0.473757 | 4_3:+34811327 | None:intergenic |
| GAGTCGGAGAAGAGGGTTGT+TGG | 0.475801 | 4_3:-34810911 | Msa0639140:CDS |
| TTAGGAGCATCAGGTTTCAC+TGG | 0.477063 | 4_3:-34811409 | Msa0639140:CDS |
| AGAATAACCGGACCCGAAAT+GGG | 0.479736 | 4_3:-34808856 | Msa0639140:CDS |
| GGTTGAGTCGGCGATGAGAA+TGG | 0.482155 | 4_3:+34811249 | None:intergenic |
| TGTACTGCTTGAACTTGTAT+CGG | 0.484396 | 4_3:-34808555 | Msa0639140:three_prime_UTR |
| CAGAGTGAACGGAGGGAAAG+TGG | 0.486453 | 4_3:+34811223 | None:intergenic |
| GGGGATTGAAGGTGGTGGGT+CGG | 0.486863 | 4_3:+34811270 | None:intergenic |
| GGGTCCTTCGGAAGAGGAAG+TGG | 0.489003 | 4_3:-34808977 | Msa0639140:CDS |
| TGTTGTTTCATTTGAAGCAG+TGG | 0.492078 | 4_3:-34810979 | Msa0639140:CDS |
| CAAAGAAATAATCTACCAAA+GGG | 0.494856 | 4_3:-34808781 | Msa0639140:CDS |
| ATTTGAAGCAGTGGGTTGGC+GGG | 0.495320 | 4_3:-34810970 | Msa0639140:CDS |
| TGAGGCTGAGTTTATGGATC+GGG | 0.496483 | 4_3:-34811092 | Msa0639140:CDS |
| GGAAAGTGGGTCGGTTGAGT+CGG | 0.496830 | 4_3:+34811237 | None:intergenic |
| TCATTCAAGATGTGGTTTGT+CGG | 0.498252 | 4_3:-34808946 | Msa0639140:CDS |
| ATTATTTCTCCTTTAGGAAG+GGG | 0.500413 | 4_3:+34809330 | None:intergenic |
| CAGGACTCTCATTCAATCCT+GGG | 0.503685 | 4_3:+34809202 | None:intergenic |
| GCGATGAGAATGGGGATTGA+AGG | 0.504387 | 4_3:+34811259 | None:intergenic |
| CTATTATTTCTCCTTTAGGA+AGG | 0.505379 | 4_3:+34809328 | None:intergenic |
| TTGTGATTACTTGGATATCA+CGG | 0.507937 | 4_3:-34811116 | Msa0639140:CDS |
| AACTTCACACCAAAATGTAC+TGG | 0.508366 | 4_3:+34809138 | None:intergenic |
| GTTGTTTCATTTGAAGCAGT+GGG | 0.509130 | 4_3:-34810978 | Msa0639140:CDS |
| AATTCTGGTTCAACCAGCTA+TGG | 0.510584 | 4_3:+34811506 | None:intergenic |
| ACTAACCCAAACCCTTCAAT+GGG | 0.511384 | 4_3:-34811302 | Msa0639140:CDS |
| CAAGCAGGGTCCTTCGGAAG+AGG | 0.511954 | 4_3:-34808983 | Msa0639140:CDS |
| CTTAACTCCATAGCCATAGC+TGG | 0.517172 | 4_3:-34811340 | Msa0639140:CDS |
| GGAGTGTAAACTCCTCCCTT+TGG | 0.517824 | 4_3:+34808766 | None:intergenic |
| TGTTTGCCGAATAAGGTTGA+GGG | 0.519475 | 4_3:-34810947 | Msa0639140:CDS |
| AAGATGTGGTTTGTCGGACA+TGG | 0.521353 | 4_3:-34808940 | Msa0639140:CDS |
| AGTTAAGATTATTGTTGTTG+AGG | 0.524793 | 4_3:+34811356 | None:intergenic |
| TGAACAAGATGAGACAAAGA+AGG | 0.526154 | 4_3:-34810844 | Msa0639140:CDS |
| CTTTCCACTTCCTCTTCCGA+AGG | 0.526470 | 4_3:+34808973 | None:intergenic |
| CTTTCGTCTCCACGGCGAGC+CGG | 0.527050 | 4_3:-34811164 | Msa0639140:CDS |
| GTGAGGCTGAGTTTATGGAT+CGG | 0.532862 | 4_3:-34811093 | Msa0639140:CDS |
| GAAAACCCCGAAGGTCTCCC+AGG | 0.532877 | 4_3:-34809219 | Msa0639140:CDS |
| TGAGTGTTGAGTCGGAGAAG+AGG | 0.534648 | 4_3:-34810919 | Msa0639140:CDS |
| TTTCATTTGAAGCAGTGGGT+TGG | 0.539908 | 4_3:-34810974 | Msa0639140:CDS |
| ATGAGAATGGGGATTGAAGG+TGG | 0.541747 | 4_3:+34811262 | None:intergenic |
| CATGCATGTTTGTAGATACC+AGG | 0.544336 | 4_3:-34809354 | Msa0639140:intron |
| GGCTCGCCGTGGAGACGAAA+GGG | 0.546320 | 4_3:+34811166 | None:intergenic |
| TCGACACACGCAGCGACGAC+CGG | 0.546474 | 4_3:+34811145 | None:intergenic |
| AAGAAGCCATCTTCCAAGAC+TGG | 0.547676 | 4_3:+34809044 | None:intergenic |
| TATTATTTCTCCTTTAGGAA+GGG | 0.547977 | 4_3:+34809329 | None:intergenic |
| TGTGATTACTTGGATATCAC+GGG | 0.555914 | 4_3:-34811115 | Msa0639140:CDS |
| GGGTCGAGATGCCCATTGAA+GGG | 0.559377 | 4_3:+34811291 | None:intergenic |
| TCTCCTTTAGGAAGGGGACC+TGG | 0.561347 | 4_3:+34809336 | None:intergenic |
| AACAACAAACCCATCTCAGC+AGG | 0.566846 | 4_3:+34810995 | None:intergenic |
| GTTTCGACCAGCTATGGCTA+TGG | 0.566852 | 4_3:+34811333 | None:intergenic |
| AAGGGAGGAGTTTACACTCC+AGG | 0.581410 | 4_3:-34808763 | Msa0639140:CDS |
| CCAAAGAAATAATCTACCAA+AGG | 0.581842 | 4_3:-34808782 | Msa0639140:CDS |
| AGAATGGGGATTGAAGGTGG+TGG | 0.581844 | 4_3:+34811265 | None:intergenic |
| CGGCTCGCCGTGGAGACGAA+AGG | 0.582195 | 4_3:+34811165 | None:intergenic |
| CTGGTAAATAGTCTGGCTGC+TGG | 0.582377 | 4_3:+34808501 | None:intergenic |
| ATACCAGGTCCCCTTCCTAA+AGG | 0.582454 | 4_3:-34809339 | Msa0639140:CDS |
| GTTGAACCAAATACAATACC+TGG | 0.587696 | 4_3:+34808745 | None:intergenic |
| GACGCAGTTGAGTATGAGAC+GGG | 0.591339 | 4_3:+34811192 | None:intergenic |
| AGTAGACTCAAAACCTGACA+TGG | 0.594396 | 4_3:-34808890 | Msa0639140:CDS |
| AAAGTGCTTCATTCAAGATG+TGG | 0.594396 | 4_3:-34808954 | Msa0639140:CDS |
| ACAACGGTTGCATCTGCTGA+AGG | 0.595333 | 4_3:+34809267 | None:intergenic |
| CAGAAGAAAATTGGTCTTTG+GGG | 0.596226 | 4_3:-34809300 | Msa0639140:CDS |
| GAACAAGATGAGACAAAGAA+GGG | 0.596590 | 4_3:-34810843 | Msa0639140:CDS |
| AGAGTGAACGGAGGGAAAGT+GGG | 0.598062 | 4_3:+34811224 | None:intergenic |
| GTCGGTCCCTTTCGTCTCCA+CGG | 0.599380 | 4_3:-34811172 | Msa0639140:CDS |
| CCTGCTTGCTGAAACCGCCT+AGG | 0.601839 | 4_3:+34808998 | None:intergenic |
| TTTGAGACAGAGTGAACGGA+GGG | 0.605712 | 4_3:+34811216 | None:intergenic |
| CAGCGACGACCGGCTCGCCG+TGG | 0.607278 | 4_3:+34811155 | None:intergenic |
| TTACTTGGATATCACGGGTG+AGG | 0.611164 | 4_3:-34811110 | Msa0639140:CDS |
| GAATGGGGATTGAAGGTGGT+GGG | 0.614138 | 4_3:+34811266 | None:intergenic |
| TCAATCCTGGGAGACCTTCG+GGG | 0.629203 | 4_3:+34809214 | None:intergenic |
| TTGAGTCGGCGATGAGAATG+GGG | 0.632132 | 4_3:+34811251 | None:intergenic |
| AGAAATAATCTACCAAAGGG+AGG | 0.636933 | 4_3:-34808778 | Msa0639140:CDS |
| TGAACGGAGGGAAAGTGGGT+CGG | 0.643065 | 4_3:+34811228 | None:intergenic |
| CTAGGCGGTTTCAGCAAGCA+GGG | 0.647197 | 4_3:-34808997 | Msa0639140:CDS |
| GTTCTAACTGAAAACCCCGA+AGG | 0.659305 | 4_3:-34809228 | Msa0639140:CDS |
| CGACGCAGTTGAGTATGAGA+CGG | 0.662654 | 4_3:+34811191 | None:intergenic |
| CTGAATTAGAATTATCGGCG+TGG | 0.677417 | 4_3:+34808825 | None:intergenic |
| ACACATTTCAAAATACCACT+CGG | 0.686126 | 4_3:-34811565 | Msa0639140:five_prime_UTR |
| CGTCTCATACTCAACTGCGT+CGG | 0.698883 | 4_3:-34811190 | Msa0639140:CDS |
| GCAGAGTGCAGAGTGCCGAG+TGG | 0.709561 | 4_3:+34811550 | None:intergenic |
| GCAGCCAGACTATTTACCAG+TGG | 0.710750 | 4_3:-34808498 | Msa0639140:three_prime_UTR |
| AATCAAAAGACCAAAGCCTG+TGG | 0.727889 | 4_3:-34810810 | Msa0639140:intron |
| TGTTATATGAATGAACAATG+CGG | 0.801827 | 4_3:+34811590 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTAGAAGTATAATAAAG+TGG | - | chr4_3:34809664-34809683 | Msa0639140:intron | 15.0% |
| !! | TTATAAAATAGATTCTCATT+TGG | - | chr4_3:34810063-34810082 | Msa0639140:intron | 15.0% |
| !!! | TAGACAGATTATTATTATTT+TGG | - | chr4_3:34810088-34810107 | Msa0639140:intron | 15.0% |
| !! | AGTATATGAAATATGTTAAA+AGG | + | chr4_3:34810703-34810722 | None:intergenic | 15.0% |
| !! | TACTTAATTGAATTTAGTGT+TGG | - | chr4_3:34809550-34809569 | Msa0639140:intron | 20.0% |
| !! | ACTTAATTGAATTTAGTGTT+GGG | - | chr4_3:34809551-34809570 | Msa0639140:intron | 20.0% |
| !! | TCTTTAATATGCATGTTATA+TGG | + | chr4_3:34809872-34809891 | None:intergenic | 20.0% |
| !! | TAAGCAATCAAAAGTTATAA+AGG | - | chr4_3:34809922-34809941 | Msa0639140:intron | 20.0% |
| !! | AAAAGTTATAAAGGATTGTT+AGG | - | chr4_3:34809931-34809950 | Msa0639140:intron | 20.0% |
| !! | TACACTCAAAAATTAGTAAA+AGG | - | chr4_3:34810005-34810024 | Msa0639140:intron | 20.0% |
| !! | ACACTCAAAAATTAGTAAAA+GGG | - | chr4_3:34810006-34810025 | Msa0639140:intron | 20.0% |
| !! | ATGCATGATTCATTAAAATT+GGG | + | chr4_3:34810734-34810753 | None:intergenic | 20.0% |
| !!! | TCTTTTGTTTTCATTTTGTA+AGG | - | chr4_3:34811499-34811518 | Msa0639140:five_prime_UTR | 20.0% |
| ! | TGTTATATGAATGAACAATG+CGG | + | chr4_3:34808514-34808533 | None:intergenic | 25.0% |
| ! | TATGGCAAATATGAAAAACA+AGG | + | chr4_3:34808580-34808599 | None:intergenic | 25.0% |
| ! | TCTGATTCTAATTCTAATTC+TGG | + | chr4_3:34808613-34808632 | None:intergenic | 25.0% |
| !! | AGTTAAGATTATTGTTGTTG+AGG | + | chr4_3:34808748-34808767 | None:intergenic | 25.0% |
| !! | TTTTTCATGATACCCAATTT+CGG | + | chr4_3:34809035-34809054 | None:intergenic | 25.0% |
| !! | CATGAAAAAAGTGTAAAGAA+TGG | - | chr4_3:34809046-34809065 | Msa0639140:CDS | 25.0% |
| ! | TAATATTGAATTCATACCAC+AGG | + | chr4_3:34809310-34809329 | None:intergenic | 25.0% |
| ! | CTTAATTGAATTTAGTGTTG+GGG | - | chr4_3:34809552-34809571 | Msa0639140:intron | 25.0% |
| ! | ATACATTCAATCAAATCATG+AGG | + | chr4_3:34809699-34809718 | None:intergenic | 25.0% |
| !! | GTTTTCACTAAATCTTTGAT+TGG | - | chr4_3:34810156-34810175 | Msa0639140:intron | 25.0% |
| ! | GTCTTCATATAATCTTCAAA+GGG | - | chr4_3:34810200-34810219 | Msa0639140:intron | 25.0% |
| !!! | ATCTGCATACTGTTTATTTT+AGG | - | chr4_3:34810376-34810395 | Msa0639140:intron | 25.0% |
| ! | TAACCACTATTTGACTATAA+TGG | + | chr4_3:34810473-34810492 | None:intergenic | 25.0% |
| ! | GGATTTAATTAAATTACTCG+AGG | + | chr4_3:34810510-34810529 | None:intergenic | 25.0% |
| ! | CATGCATGATTCATTAAAAT+TGG | + | chr4_3:34810735-34810754 | None:intergenic | 25.0% |
| !! | TATTATTTCTCCTTTAGGAA+GGG | + | chr4_3:34810775-34810794 | None:intergenic | 25.0% |
| ! | GAAGTTATAACAAGAATAAC+CGG | - | chr4_3:34811233-34811252 | Msa0639140:CDS | 25.0% |
| ! | CAAAGAAATAATCTACCAAA+GGG | - | chr4_3:34811320-34811339 | Msa0639140:CDS | 25.0% |
| ACACATTTCAAAATACCACT+CGG | - | chr4_3:34808536-34808555 | Msa0639140:three_prime_UTR | 30.0% | |
| ! | TTTTTCATATTTGCCATAGC+TGG | - | chr4_3:34808582-34808601 | Msa0639140:three_prime_UTR | 30.0% |
| ! | TTAGAACTGTTTTGTGATGA+TGG | - | chr4_3:34808634-34808653 | Msa0639140:three_prime_UTR | 30.0% |
| !!! | GATGTCGAATTTTGTTTCTA+CGG | + | chr4_3:34808666-34808685 | None:intergenic | 30.0% |
| AAATTCGACATCGTAATCTT+AGG | - | chr4_3:34808674-34808693 | Msa0639140:CDS | 30.0% | |
| TTGTGATTACTTGGATATCA+CGG | - | chr4_3:34808985-34809004 | Msa0639140:CDS | 30.0% | |
| AAAAAACCCTCAACCTTATT+CGG | + | chr4_3:34809163-34809182 | None:intergenic | 30.0% | |
| ACACCATCAATCTTAAATGT+CGG | + | chr4_3:34809366-34809385 | None:intergenic | 30.0% | |
| TTGAATATAACCACATGCAT+TGG | + | chr4_3:34809440-34809459 | None:intergenic | 30.0% | |
| !! | GTTTTGATGTATGTCATGTT+CGG | - | chr4_3:34809481-34809500 | Msa0639140:intron | 30.0% |
| TTCAATCAAATCATGAGGTA+AGG | + | chr4_3:34809694-34809713 | None:intergenic | 30.0% | |
| GTGTAATTGTAATTGCGTTA+TGG | - | chr4_3:34809777-34809796 | Msa0639140:intron | 30.0% | |
| ! | TTGTTCGATGAGTTTTTCTA+TGG | - | chr4_3:34809819-34809838 | Msa0639140:intron | 30.0% |
| AAGATTGAGCAATTCTTGAA+CGG | - | chr4_3:34809888-34809907 | Msa0639140:intron | 30.0% | |
| AGTTATAAAGGATTGTTAGG+AGG | - | chr4_3:34809934-34809953 | Msa0639140:intron | 30.0% | |
| AGGGAAAAAAAACATCACAA+CGG | - | chr4_3:34810025-34810044 | Msa0639140:intron | 30.0% | |
| !! | AATATTACTGCTAGCTTTGT+CGG | - | chr4_3:34810111-34810130 | Msa0639140:intron | 30.0% |
| TTGAAGATTATATGAAGACC+AGG | + | chr4_3:34810199-34810218 | None:intergenic | 30.0% | |
| GGTCTTCATATAATCTTCAA+AGG | - | chr4_3:34810199-34810218 | Msa0639140:intron | 30.0% | |
| ATACCTGCGAATTATTCTTA+GGG | + | chr4_3:34810253-34810272 | None:intergenic | 30.0% | |
| TATACCTGCGAATTATTCTT+AGG | + | chr4_3:34810254-34810273 | None:intergenic | 30.0% | |
| CAGGAATGAAGAATACTATA+TGG | + | chr4_3:34810316-34810335 | None:intergenic | 30.0% | |
| ! | GTTGACTCTATTAATTGTCA+TGG | - | chr4_3:34810418-34810437 | Msa0639140:intron | 30.0% |
| ACTCCATTATAGTCAAATAG+TGG | - | chr4_3:34810467-34810486 | Msa0639140:intron | 30.0% | |
| ! | ATTATTTCTCCTTTAGGAAG+GGG | + | chr4_3:34810774-34810793 | None:intergenic | 30.0% |
| ! | CTATTATTTCTCCTTTAGGA+AGG | + | chr4_3:34810776-34810795 | None:intergenic | 30.0% |
| ! | CGAAAATGTTTTTCCAACAA+CGG | + | chr4_3:34810853-34810872 | None:intergenic | 30.0% |
| ! | CGTTGTTGGAAAAACATTTT+CGG | - | chr4_3:34810851-34810870 | Msa0639140:CDS | 30.0% |
| ! | TTGAGAAAAGGAAAGTCTTT+TGG | - | chr4_3:34810928-34810947 | Msa0639140:CDS | 30.0% |
| ! | ATTTTCGCATACATCACTTT+TGG | - | chr4_3:34811008-34811027 | Msa0639140:CDS | 30.0% |
| !!! | ATCACTTTTGGAATAATCCT+AGG | - | chr4_3:34811020-34811039 | Msa0639140:CDS | 30.0% |
| !!! | TATCCTTCAATTTTTAGCCT+AGG | - | chr4_3:34811086-34811105 | Msa0639140:CDS | 30.0% |
| GCACACTGAATTAGAATTAT+CGG | + | chr4_3:34811284-34811303 | None:intergenic | 30.0% | |
| ! | CCTTTGGTAGATTATTTCTT+TGG | + | chr4_3:34811322-34811341 | None:intergenic | 30.0% |
| CCAAAGAAATAATCTACCAA+AGG | - | chr4_3:34811319-34811338 | Msa0639140:CDS | 30.0% | |
| CAAGAAAGACTTCAACAAAA+TGG | - | chr4_3:34811386-34811405 | Msa0639140:CDS | 30.0% | |
| TGTGATTACTTGGATATCAC+GGG | - | chr4_3:34808986-34809005 | Msa0639140:CDS | 35.0% | |
| !! | TCTTTGATTGTTTCTGCTTG+TGG | - | chr4_3:34809070-34809089 | Msa0639140:CDS | 35.0% |
| !! | CTTTGATTGTTTCTGCTTGT+GGG | - | chr4_3:34809071-34809090 | Msa0639140:CDS | 35.0% |
| !! | TGTTGTTTCATTTGAAGCAG+TGG | - | chr4_3:34809122-34809141 | Msa0639140:CDS | 35.0% |
| ! | GTTGTTTCATTTGAAGCAGT+GGG | - | chr4_3:34809123-34809142 | Msa0639140:CDS | 35.0% |
| !!! | AAGAGGGTTGTTGGTAATTT+TGG | - | chr4_3:34809199-34809218 | Msa0639140:CDS | 35.0% |
| TGAACAAGATGAGACAAAGA+AGG | - | chr4_3:34809257-34809276 | Msa0639140:CDS | 35.0% | |
| GAACAAGATGAGACAAAGAA+GGG | - | chr4_3:34809258-34809277 | Msa0639140:CDS | 35.0% | |
| CTTAGTTACTACCTAACCTA+TGG | + | chr4_3:34809527-34809546 | None:intergenic | 35.0% | |
| CATAGGTTAGGTAGTAACTA+AGG | - | chr4_3:34809525-34809544 | Msa0639140:intron | 35.0% | |
| AACTCATCGAACAACAAACA+GGG | + | chr4_3:34809813-34809832 | None:intergenic | 35.0% | |
| AAACTCATCGAACAACAAAC+AGG | + | chr4_3:34809814-34809833 | None:intergenic | 35.0% | |
| AGATTGAGCAATTCTTGAAC+GGG | - | chr4_3:34809889-34809908 | Msa0639140:intron | 35.0% | |
| GAAAAAAAACATCACAACGG+TGG | - | chr4_3:34810028-34810047 | Msa0639140:intron | 35.0% | |
| CGGTTGGAATGATTAATTGA+CGG | - | chr4_3:34810131-34810150 | Msa0639140:intron | 35.0% | |
| GTCTTCATATTTAACAAGCC+TGG | - | chr4_3:34810178-34810197 | Msa0639140:intron | 35.0% | |
| AGAGATTGTAGTATAGTGTC+AGG | + | chr4_3:34810335-34810354 | None:intergenic | 35.0% | |
| GACTCTATTAATTGTCATGG+TGG | - | chr4_3:34810421-34810440 | Msa0639140:intron | 35.0% | |
| TAGCATATCGCTGAACAATA+GGG | + | chr4_3:34810531-34810550 | None:intergenic | 35.0% | |
| ATAGCATATCGCTGAACAAT+AGG | + | chr4_3:34810532-34810551 | None:intergenic | 35.0% | |
| TTGTCAATCACAGAAAGTAG+CGG | + | chr4_3:34810617-34810636 | None:intergenic | 35.0% | |
| ! | CGCTCTATTATTTCTCCTTT+AGG | + | chr4_3:34810780-34810799 | None:intergenic | 35.0% |
| !! | CCAGAAGAAAATTGGTCTTT+GGG | - | chr4_3:34810800-34810819 | Msa0639140:intron | 35.0% |
| !! | CAGAAGAAAATTGGTCTTTG+GGG | - | chr4_3:34810801-34810820 | Msa0639140:intron | 35.0% |
| AACTTCACACCAAAATGTAC+TGG | + | chr4_3:34810966-34810985 | None:intergenic | 35.0% | |
| !! | GTACATTTTGGTGTGAAGTT+AGG | - | chr4_3:34810966-34810985 | Msa0639140:CDS | 35.0% |
| TTAGGCTCAAAATCTCTGTT+AGG | - | chr4_3:34810984-34811003 | Msa0639140:CDS | 35.0% | |
| ! | GGAATAATCCTAGGTCTTTT+TGG | - | chr4_3:34811029-34811048 | Msa0639140:CDS | 35.0% |
| ! | AAAGTGCTTCATTCAAGATG+TGG | - | chr4_3:34811147-34811166 | Msa0639140:CDS | 35.0% |
| ! | TCATTCAAGATGTGGTTTGT+CGG | - | chr4_3:34811155-34811174 | Msa0639140:CDS | 35.0% |
| ! | CTTGTTATAACTTCCATGTC+AGG | + | chr4_3:34811227-34811246 | None:intergenic | 35.0% |
| AGAAATAATCTACCAAAGGG+AGG | - | chr4_3:34811323-34811342 | Msa0639140:CDS | 35.0% | |
| ! | TACACTCCAGGTATTGTATT+TGG | - | chr4_3:34811350-34811369 | Msa0639140:CDS | 35.0% |
| GTTGAACCAAATACAATACC+TGG | + | chr4_3:34811359-34811378 | None:intergenic | 35.0% | |
| ! | TGACTTTTGCAGCTCATTAT+TGG | - | chr4_3:34811449-34811468 | Msa0639140:CDS | 35.0% |
| ! | TTTTGCAGCTCATTATTGGT+TGG | - | chr4_3:34811453-34811472 | Msa0639140:CDS | 35.0% |
| TGTACTGCTTGAACTTGTAT+CGG | - | chr4_3:34811546-34811565 | Msa0639140:five_prime_UTR | 35.0% | |
| !! | AATTCTGGTTCAACCAGCTA+TGG | + | chr4_3:34808598-34808617 | None:intergenic | 40.0% |
| !! | ATCGTAATCTTAGGAGCATC+AGG | - | chr4_3:34808683-34808702 | Msa0639140:CDS | 40.0% |
| !!! | GGGTTTGGGTTAGTTTTGAT+GGG | + | chr4_3:34808793-34808812 | None:intergenic | 40.0% |
| !!! | AGGGTTTGGGTTAGTTTTGA+TGG | + | chr4_3:34808794-34808813 | None:intergenic | 40.0% |
| AACTAACCCAAACCCTTCAA+TGG | - | chr4_3:34808798-34808817 | Msa0639140:CDS | 40.0% | |
| ACTAACCCAAACCCTTCAAT+GGG | - | chr4_3:34808799-34808818 | Msa0639140:CDS | 40.0% | |
| ! | TTTCATTTGAAGCAGTGGGT+TGG | - | chr4_3:34809127-34809146 | Msa0639140:CDS | 40.0% |
| TGTTTGCCGAATAAGGTTGA+GGG | - | chr4_3:34809154-34809173 | Msa0639140:CDS | 40.0% | |
| !!! | GGGTTTTTTGAGTGTTGAGT+CGG | - | chr4_3:34809174-34809193 | Msa0639140:CDS | 40.0% |
| AATCAAAAGACCAAAGCCTG+TGG | - | chr4_3:34809291-34809310 | Msa0639140:CDS | 40.0% | |
| TGAATTCATACCACAGGCTT+TGG | + | chr4_3:34809304-34809323 | None:intergenic | 40.0% | |
| ! | GCACCGACATTTAAGATTGA+TGG | - | chr4_3:34809360-34809379 | Msa0639140:intron | 40.0% |
| ATCTATGATGCCAATGCATG+TGG | - | chr4_3:34809427-34809446 | Msa0639140:intron | 40.0% | |
| TGTATCTGTCTGTACTCCAT+AGG | - | chr4_3:34809508-34809527 | Msa0639140:intron | 40.0% | |
| ACTCATCGAACAACAAACAG+GGG | + | chr4_3:34809812-34809831 | None:intergenic | 40.0% | |
| TTATTCTTAGGGTGTGACGA+TGG | + | chr4_3:34810242-34810261 | None:intergenic | 40.0% | |
| ACACCCTAAGAATAATTCGC+AGG | - | chr4_3:34810247-34810266 | Msa0639140:intron | 40.0% | |
| GTGTTGTCAAATAGCTCCTA+TGG | - | chr4_3:34810561-34810580 | Msa0639140:intron | 40.0% | |
| TTGTCAAATAGCTCCTATGG+CGG | - | chr4_3:34810564-34810583 | Msa0639140:intron | 40.0% | |
| CATGCATGTTTGTAGATACC+AGG | - | chr4_3:34810747-34810766 | Msa0639140:intron | 40.0% | |
| ! | ATAGAGCGCCAGAAGAAAAT+TGG | - | chr4_3:34810792-34810811 | Msa0639140:intron | 40.0% |
| !! | GCCAGAAGAAAATTGGTCTT+TGG | - | chr4_3:34810799-34810818 | Msa0639140:intron | 40.0% |
| ! | CCCAAAGACCAATTTTCTTC+TGG | + | chr4_3:34810803-34810822 | None:intergenic | 40.0% |
| ! | TTCCTTTTCTCAACAGTCTC+AGG | + | chr4_3:34810921-34810940 | None:intergenic | 40.0% |
| ! | TCTGTGAAGCCAGTACATTT+TGG | - | chr4_3:34810954-34810973 | Msa0639140:CDS | 40.0% |
| TGGTACTTCCAAAAAGACCT+AGG | + | chr4_3:34811040-34811059 | None:intergenic | 40.0% | |
| !!! | CTTTTTGGAAGTACCAGTCT+TGG | - | chr4_3:34811044-34811063 | Msa0639140:CDS | 40.0% |
| !!! | CCTTCAATTTTTAGCCTAGG+CGG | - | chr4_3:34811089-34811108 | Msa0639140:CDS | 40.0% |
| AGTAGACTCAAAACCTGACA+TGG | - | chr4_3:34811211-34811230 | Msa0639140:CDS | 40.0% | |
| GTGGTTACATAACCCATTTC+GGG | + | chr4_3:34811260-34811279 | None:intergenic | 40.0% | |
| CGTGGTTACATAACCCATTT+CGG | + | chr4_3:34811261-34811280 | None:intergenic | 40.0% | |
| CTGAATTAGAATTATCGGCG+TGG | + | chr4_3:34811279-34811298 | None:intergenic | 40.0% | |
| !! | TTAGGAGCATCAGGTTTCAC+TGG | - | chr4_3:34808692-34808711 | Msa0639140:CDS | 45.0% |
| CTTAACTCCATAGCCATAGC+TGG | - | chr4_3:34808761-34808780 | Msa0639140:CDS | 45.0% | |
| AGATGCCCATTGAAGGGTTT+GGG | + | chr4_3:34808807-34808826 | None:intergenic | 45.0% | |
| ATGAGAATGGGGATTGAAGG+TGG | + | chr4_3:34808842-34808861 | None:intergenic | 45.0% | |
| ! | TTTGAGACAGAGTGAACGGA+GGG | + | chr4_3:34808888-34808907 | None:intergenic | 45.0% |
| !!! | TTTTGAGACAGAGTGAACGG+AGG | + | chr4_3:34808889-34808908 | None:intergenic | 45.0% |
| !!! | GGGTTTTGAGACAGAGTGAA+CGG | + | chr4_3:34808892-34808911 | None:intergenic | 45.0% |
| !! | CGAAACGGGTTGTGATTACT+TGG | - | chr4_3:34808976-34808995 | Msa0639140:CDS | 45.0% |
| TTACTTGGATATCACGGGTG+AGG | - | chr4_3:34808991-34809010 | Msa0639140:CDS | 45.0% | |
| GTGAGGCTGAGTTTATGGAT+CGG | - | chr4_3:34809008-34809027 | Msa0639140:CDS | 45.0% | |
| TGAGGCTGAGTTTATGGATC+GGG | - | chr4_3:34809009-34809028 | Msa0639140:CDS | 45.0% | |
| TTTATGGATCGGGCCGAAAT+TGG | - | chr4_3:34809019-34809038 | Msa0639140:CDS | 45.0% | |
| TTATGGATCGGGCCGAAATT+GGG | - | chr4_3:34809020-34809039 | Msa0639140:CDS | 45.0% | |
| AACAACAAACCCATCTCAGC+AGG | + | chr4_3:34809109-34809128 | None:intergenic | 45.0% | |
| GTGTTTGCCGAATAAGGTTG+AGG | - | chr4_3:34809153-34809172 | Msa0639140:CDS | 45.0% | |
| CTGTCTGTACTCCATAGGTT+AGG | - | chr4_3:34809513-34809532 | Msa0639140:intron | 45.0% | |
| ATTGTTAGGAGGCTTCTACC+AGG | - | chr4_3:34809945-34809964 | Msa0639140:intron | 45.0% | |
| !! | TTACTGCTAGCTTTGTCGGT+TGG | - | chr4_3:34810115-34810134 | Msa0639140:intron | 45.0% |
| CTGCATATGCGAAGTGAAGA+TGG | - | chr4_3:34810276-34810295 | Msa0639140:intron | 45.0% | |
| GTTCTAACTGAAAACCCCGA+AGG | - | chr4_3:34810873-34810892 | Msa0639140:CDS | 45.0% | |
| ATTCAATCCTGGGAGACCTT+CGG | + | chr4_3:34810892-34810911 | None:intergenic | 45.0% | |
| CAGGACTCTCATTCAATCCT+GGG | + | chr4_3:34810902-34810921 | None:intergenic | 45.0% | |
| TCAGGACTCTCATTCAATCC+TGG | + | chr4_3:34810903-34810922 | None:intergenic | 45.0% | |
| GTCCTGAGACTGTTGAGAAA+AGG | - | chr4_3:34810916-34810935 | Msa0639140:CDS | 45.0% | |
| ! | GAAGTACCAGTCTTGGAAGA+TGG | - | chr4_3:34811051-34811070 | Msa0639140:CDS | 45.0% |
| AAGAAGCCATCTTCCAAGAC+TGG | + | chr4_3:34811060-34811079 | None:intergenic | 45.0% | |
| CCGCCTAGGCTAAAAATTGA+AGG | + | chr4_3:34811092-34811111 | None:intergenic | 45.0% | |
| ! | AAGATGTGGTTTGTCGGACA+TGG | - | chr4_3:34811161-34811180 | Msa0639140:CDS | 45.0% |
| AAGAATAACCGGACCCGAAA+TGG | - | chr4_3:34811244-34811263 | Msa0639140:CDS | 45.0% | |
| AGAATAACCGGACCCGAAAT+GGG | - | chr4_3:34811245-34811264 | Msa0639140:CDS | 45.0% | |
| ! | TACATAACCCATTTCGGGTC+CGG | + | chr4_3:34811255-34811274 | None:intergenic | 45.0% |
| GTTTCGACCAGCTATGGCTA+TGG | + | chr4_3:34808771-34808790 | None:intergenic | 50.0% | |
| !! | TGATGGGTTTCGACCAGCTA+TGG | + | chr4_3:34808777-34808796 | None:intergenic | 50.0% |
| GAGATGCCCATTGAAGGGTT+TGG | + | chr4_3:34808808-34808827 | None:intergenic | 50.0% | |
| GAATGGGGATTGAAGGTGGT+GGG | + | chr4_3:34808838-34808857 | None:intergenic | 50.0% | |
| AGAATGGGGATTGAAGGTGG+TGG | + | chr4_3:34808839-34808858 | None:intergenic | 50.0% | |
| GCGATGAGAATGGGGATTGA+AGG | + | chr4_3:34808845-34808864 | None:intergenic | 50.0% | |
| TTGAGTCGGCGATGAGAATG+GGG | + | chr4_3:34808853-34808872 | None:intergenic | 50.0% | |
| GTTGAGTCGGCGATGAGAAT+GGG | + | chr4_3:34808854-34808873 | None:intergenic | 50.0% | |
| AGAGTGAACGGAGGGAAAGT+GGG | + | chr4_3:34808880-34808899 | None:intergenic | 50.0% | |
| GACGCAGTTGAGTATGAGAC+GGG | + | chr4_3:34808912-34808931 | None:intergenic | 50.0% | |
| CGACGCAGTTGAGTATGAGA+CGG | + | chr4_3:34808913-34808932 | None:intergenic | 50.0% | |
| CGTCTCATACTCAACTGCGT+CGG | - | chr4_3:34808911-34808930 | Msa0639140:CDS | 50.0% | |
| TGACTCTGTTCCTGCTGAGA+TGG | - | chr4_3:34809096-34809115 | Msa0639140:CDS | 50.0% | |
| GACTCTGTTCCTGCTGAGAT+GGG | - | chr4_3:34809097-34809116 | Msa0639140:CDS | 50.0% | |
| !! | CATTTGAAGCAGTGGGTTGG+CGG | - | chr4_3:34809130-34809149 | Msa0639140:CDS | 50.0% |
| !! | ATTTGAAGCAGTGGGTTGGC+GGG | - | chr4_3:34809131-34809150 | Msa0639140:CDS | 50.0% |
| !! | TGAGTGTTGAGTCGGAGAAG+AGG | - | chr4_3:34809182-34809201 | Msa0639140:CDS | 50.0% |
| !! | GAGTGTTGAGTCGGAGAAGA+GGG | - | chr4_3:34809183-34809202 | Msa0639140:CDS | 50.0% |
| GCTTCTACCAGGCAGGATTT+GGG | - | chr4_3:34809956-34809975 | Msa0639140:intron | 50.0% | |
| TACCAGGCAGGATTTGGGAA+GGG | - | chr4_3:34809961-34809980 | Msa0639140:intron | 50.0% | |
| AGGATTTGGGAAGGGTGGAT+TGG | - | chr4_3:34809969-34809988 | Msa0639140:intron | 50.0% | |
| TATGGCGGCAATAGCATGAG+CGG | - | chr4_3:34810579-34810598 | Msa0639140:intron | 50.0% | |
| ATACCAGGTCCCCTTCCTAA+AGG | - | chr4_3:34810762-34810781 | Msa0639140:intron | 50.0% | |
| ACAACGGTTGCATCTGCTGA+AGG | + | chr4_3:34810837-34810856 | None:intergenic | 50.0% | |
| TCAGCAGATGCAACCGTTGT+TGG | - | chr4_3:34810837-34810856 | Msa0639140:CDS | 50.0% | |
| TTCAATCCTGGGAGACCTTC+GGG | + | chr4_3:34810891-34810910 | None:intergenic | 50.0% | |
| TTTCAGCAAGCAGGGTCCTT+CGG | - | chr4_3:34811112-34811131 | Msa0639140:CDS | 50.0% | |
| CTTTCCACTTCCTCTTCCGA+AGG | + | chr4_3:34811131-34811150 | None:intergenic | 50.0% | |
| GGAGTGTAAACTCCTCCCTT+TGG | + | chr4_3:34811338-34811357 | None:intergenic | 50.0% | |
| AAGGGAGGAGTTTACACTCC+AGG | - | chr4_3:34811338-34811357 | Msa0639140:CDS | 50.0% | |
| CTGGTAAATAGTCTGGCTGC+TGG | + | chr4_3:34811603-34811622 | None:intergenic | 50.0% | |
| GGGTCGAGATGCCCATTGAA+GGG | + | chr4_3:34808813-34808832 | None:intergenic | 55.0% | |
| GGTTGAGTCGGCGATGAGAA+TGG | + | chr4_3:34808855-34808874 | None:intergenic | 55.0% | |
| GGAAAGTGGGTCGGTTGAGT+CGG | + | chr4_3:34808867-34808886 | None:intergenic | 55.0% | |
| TGAACGGAGGGAAAGTGGGT+CGG | + | chr4_3:34808876-34808895 | None:intergenic | 55.0% | |
| CAGAGTGAACGGAGGGAAAG+TGG | + | chr4_3:34808881-34808900 | None:intergenic | 55.0% | |
| CACGGGTGAGGCTGAGTTTA+TGG | - | chr4_3:34809003-34809022 | Msa0639140:CDS | 55.0% | |
| ! | TGGCGGGTGTTTGCCGAATA+AGG | - | chr4_3:34809147-34809166 | Msa0639140:CDS | 55.0% |
| GAGTCGGAGAAGAGGGTTGT+TGG | - | chr4_3:34809190-34809209 | Msa0639140:CDS | 55.0% | |
| TTAGGAGGCTTCTACCAGGC+AGG | - | chr4_3:34809949-34809968 | Msa0639140:intron | 55.0% | |
| GGCTTCTACCAGGCAGGATT+TGG | - | chr4_3:34809955-34809974 | Msa0639140:intron | 55.0% | |
| CTACCAGGCAGGATTTGGGA+AGG | - | chr4_3:34809960-34809979 | Msa0639140:intron | 55.0% | |
| GCTCATGCTATTGCCGCCAT+AGG | + | chr4_3:34810580-34810599 | None:intergenic | 55.0% | |
| ! | TCTCCTTTAGGAAGGGGACC+TGG | + | chr4_3:34810768-34810787 | None:intergenic | 55.0% |
| TCAATCCTGGGAGACCTTCG+GGG | + | chr4_3:34810890-34810909 | None:intergenic | 55.0% | |
| CTAGGCGGTTTCAGCAAGCA+GGG | - | chr4_3:34811104-34811123 | Msa0639140:CDS | 55.0% | |
| CGGGTCGAGATGCCCATTGA+AGG | + | chr4_3:34808814-34808833 | None:intergenic | 60.0% | |
| !! | GGGATTGAAGGTGGTGGGTC+GGG | + | chr4_3:34808833-34808852 | None:intergenic | 60.0% |
| !! | GGGGATTGAAGGTGGTGGGT+CGG | + | chr4_3:34808834-34808853 | None:intergenic | 60.0% |
| GTCGGTCCCTTTCGTCTCCA+CGG | - | chr4_3:34808929-34808948 | Msa0639140:CDS | 60.0% | |
| CGTCGCTGCGTGTGTCGAAA+CGG | - | chr4_3:34808961-34808980 | Msa0639140:CDS | 60.0% | |
| GTCGCTGCGTGTGTCGAAAC+GGG | - | chr4_3:34808962-34808981 | Msa0639140:CDS | 60.0% | |
| CACCCTTCCCAAATCCTGCC+TGG | + | chr4_3:34809966-34809985 | None:intergenic | 60.0% | |
| CAGGCAGGATTTGGGAAGGG+TGG | - | chr4_3:34809964-34809983 | Msa0639140:intron | 60.0% | |
| GAAAACCCCGAAGGTCTCCC+AGG | - | chr4_3:34810882-34810901 | Msa0639140:CDS | 60.0% | |
| ! | CCTGCTTGCTGAAACCGCCT+AGG | + | chr4_3:34811106-34811125 | None:intergenic | 60.0% |
| CCTAGGCGGTTTCAGCAAGC+AGG | - | chr4_3:34811103-34811122 | Msa0639140:CDS | 60.0% | |
| CAAGCAGGGTCCTTCGGAAG+AGG | - | chr4_3:34811118-34811137 | Msa0639140:CDS | 60.0% | |
| GGGTCCTTCGGAAGAGGAAG+TGG | - | chr4_3:34811124-34811143 | Msa0639140:CDS | 60.0% | |
| !! | GCAGAGTGCAGAGTGCCGAG+TGG | + | chr4_3:34808554-34808573 | None:intergenic | 65.0% |
| GGCTCGCCGTGGAGACGAAA+GGG | + | chr4_3:34808938-34808957 | None:intergenic | 65.0% | |
| CTTTCGTCTCCACGGCGAGC+CGG | - | chr4_3:34808937-34808956 | Msa0639140:CDS | 65.0% | |
| TCGACACACGCAGCGACGAC+CGG | + | chr4_3:34808959-34808978 | None:intergenic | 65.0% | |
| CGGCTCGCCGTGGAGACGAA+AGG | + | chr4_3:34808939-34808958 | None:intergenic | 70.0% | |
| !!! | CAGCGACGACCGGCTCGCCG+TGG | + | chr4_3:34808949-34808968 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 34808498 | 34811625 | 34808498 | ID=Msa0639140;Name=Msa0639140 |
| chr4_3 | mRNA | 34808498 | 34811625 | 34808498 | ID=Msa0639140-mRNA-1;Parent=Msa0639140;Name=Msa0639140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=152|1|1|1|1|1|2|174|450 |
| chr4_3 | exon | 34808498 | 34809361 | 34808498 | ID=Msa0639140-mRNA-1:exon:8157;Parent=Msa0639140-mRNA-1 |
| chr4_3 | exon | 34810811 | 34811625 | 34810811 | ID=Msa0639140-mRNA-1:exon:8156;Parent=Msa0639140-mRNA-1 |
| chr4_3 | five_prime_UTR | 34811474 | 34811625 | 34811474 | ID=Msa0639140-mRNA-1:five_prime_utr;Parent=Msa0639140-mRNA-1 |
| chr4_3 | CDS | 34810811 | 34811473 | 34810811 | ID=Msa0639140-mRNA-1:cds;Parent=Msa0639140-mRNA-1 |
| chr4_3 | CDS | 34808672 | 34809361 | 34808672 | ID=Msa0639140-mRNA-1:cds;Parent=Msa0639140-mRNA-1 |
| chr4_3 | three_prime_UTR | 34808498 | 34808671 | 34808498 | ID=Msa0639140-mRNA-1:three_prime_utr;Parent=Msa0639140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
