AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0619070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619070 MtrunA17_Chr8g0383761 98.925 93 1 0 1 93 1 93 2.55e-63 186
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0619070 AT5G09830.1 87.342 79 10 0 3 81 2 80 7.48e-47 145

Find 50 sgRNAs with CRISPR-Local

Find 155 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGAAAGAATTAAAATTT+AGG 0.183954 4_2:+70095377 None:intergenic
CAGAACAATTTGAAGGAAAA+AGG 0.220014 4_2:-70095859 Msa0619070:CDS
AAGATGGGAAGGGTTGAGTT+TGG 0.324170 4_2:+70097599 None:intergenic
ATATATCATGACAGCGAGTT+TGG 0.342289 4_2:-70095183 Msa0619070:three_prime_UTR
CGGCAGAAAGGTCAGAGAAA+TGG 0.397569 4_2:-70097658 Msa0619070:exon
TAACCTTTGCTATAGTCATC+TGG 0.408338 4_2:-70095262 Msa0619070:three_prime_UTR
GCGAATATATATTTCACAAA+AGG 0.408615 4_2:-70097703 Msa0619070:five_prime_UTR
ACTCGCTGTCATGATATATC+AGG 0.415932 4_2:+70095187 None:intergenic
ACAAAGTGCTTGACTTTCAG+TGG 0.429776 4_2:-70095573 Msa0619070:three_prime_UTR
AAATCCTTACAATATGTTGC+TGG 0.434932 4_2:-70095672 Msa0619070:three_prime_UTR
AAACAATGCATGACTTATGA+AGG 0.436982 4_2:-70095446 Msa0619070:three_prime_UTR
ATTGTTTCAGAACAATTTGA+AGG 0.440449 4_2:-70095866 Msa0619070:CDS
CAGGAAGTAACTGATATATC+TGG 0.443253 4_2:-70096023 Msa0619070:CDS
TCTAGGCCGCAGAATTTGAT+TGG 0.445746 4_2:+70095717 None:intergenic
GGCCGCAGAATTTGATTGGT+TGG 0.446170 4_2:+70095721 None:intergenic
CGAATATATATTTCACAAAA+GGG 0.449851 4_2:-70097702 Msa0619070:five_prime_UTR
GGCAGAAAGGTCAGAGAAAT+GGG 0.453846 4_2:-70097657 Msa0619070:exon
TTCCACGTAAAGGTTGAACT+TGG 0.457589 4_2:+70095359 None:intergenic
GTGAACGACAAAATAGGATA+AGG 0.493589 4_2:-70097779 None:intergenic
ACTGCCAGCAACATATTGTA+AGG 0.497239 4_2:+70095668 None:intergenic
CTCTTTCATTTCCTCCTCCA+AGG 0.499465 4_2:+70095805 None:intergenic
AACAAGTTAGTTCCACGTAA+AGG 0.511119 4_2:+70095349 None:intergenic
TATGTTGCTGGCAGTATTTG+TGG 0.513595 4_2:-70095660 Msa0619070:three_prime_UTR
TTATAAATATTATATGCTCT+AGG 0.527765 4_2:+70095700 None:intergenic
AATGGTGAATGCTGCCTTGG+AGG 0.528246 4_2:-70095819 Msa0619070:CDS
ATCGATCCGCGTGTGAGCAA+CGG 0.537897 4_2:-70097737 Msa0619070:five_prime_UTR
GAAAGAAAAGCTTACAAGAT+GGG 0.541620 4_2:+70097584 None:intergenic
TCGAATGGTGAATGCTGCCT+TGG 0.542792 4_2:-70095822 Msa0619070:CDS
CAAAGTGCTTGACTTTCAGT+GGG 0.546228 4_2:-70095572 Msa0619070:three_prime_UTR
GAAAAGCTTACAAGATGGGA+AGG 0.546986 4_2:+70097588 None:intergenic
GACATAGCGACACTCACTAA+AGG 0.559403 4_2:+70095209 None:intergenic
GTATTGCTCAATAGAGATGA+AGG 0.567760 4_2:-70095510 Msa0619070:three_prime_UTR
CAGAGAAATGGGTGTGACAA+AGG 0.570077 4_2:-70097646 Msa0619070:exon
GAAATTGAAGAACGGCAGAA+AGG 0.590979 4_2:-70097670 Msa0619070:five_prime_UTR
TTCCAAGTTCAACCTTTACG+TGG 0.596722 4_2:-70095361 Msa0619070:three_prime_UTR
GGTGAATGCTGCCTTGGAGG+AGG 0.603126 4_2:-70095816 Msa0619070:CDS
AACTTGCCGTTGCTCACACG+CGG 0.606776 4_2:+70097731 None:intergenic
GAAGTAACTGATATATCTGG+AGG 0.618293 4_2:-70096020 Msa0619070:CDS
CCTCCAGATGACTATAGCAA+AGG 0.625539 4_2:+70095259 None:intergenic
GCTATTGGAAAGGCATCGAA+TGG 0.630188 4_2:-70095837 Msa0619070:CDS
GTCCAACCAATCAAATTCTG+CGG 0.635925 4_2:-70095723 Msa0619070:CDS
AAGCTGTAACTCCAGAACAG+TGG 0.652784 4_2:-70095760 Msa0619070:CDS
AACTTGTTGACTTGAAAGCG+TGG 0.653144 4_2:-70095334 Msa0619070:three_prime_UTR
AAAAGCTTACAAGATGGGAA+GGG 0.654898 4_2:+70097589 None:intergenic
AGTGCAACATAAAATTTGAG+TGG 0.662237 4_2:+70095611 None:intergenic
AAGTAACTGATATATCTGGA+GGG 0.667213 4_2:-70096019 Msa0619070:intron
ACTTGTTGACTTGAAAGCGT+GGG 0.669277 4_2:-70095333 Msa0619070:three_prime_UTR
CCTTTGCTATAGTCATCTGG+AGG 0.669893 4_2:-70095259 Msa0619070:three_prime_UTR
TTACACGAGAAATTGAAGAA+CGG 0.691924 4_2:-70097678 Msa0619070:five_prime_UTR
AAAGTGCTTGACTTTCAGTG+GGG 0.752919 4_2:-70095571 Msa0619070:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAAAAAAAAAAAAAAAAACA+TGG + chr4_2:70095451-70095470 None:intergenic 10.0%
!!! GGATTATTTTTTATTTTTGT+TGG - chr4_2:70096717-70096736 Msa0619070:intron 15.0%
!! TTATAAATATTATATGCTCT+AGG + chr4_2:70097246-70097265 None:intergenic 15.0%
!! CGAATATATATTTCACAAAA+GGG - chr4_2:70095241-70095260 Msa0619070:three_prime_UTR 20.0%
!!! TTTGAATTTTGGATACATTT+GGG + chr4_2:70095650-70095669 None:intergenic 20.0%
!!! TTTTGAATTTTGGATACATT+TGG + chr4_2:70095651-70095670 None:intergenic 20.0%
!! TTAACATGATCAGAATTTAA+TGG - chr4_2:70095999-70096018 Msa0619070:intron 20.0%
!! TCAAAATAACTATACAAAAG+TGG - chr4_2:70096098-70096117 Msa0619070:intron 20.0%
!! AAAAGTAAAAAGGAAGTAAA+GGG + chr4_2:70096195-70096214 None:intergenic 20.0%
!! TACTGTCAAATTTAGTAAAA+AGG + chr4_2:70096234-70096253 None:intergenic 20.0%
!!! TGATTTAATTAGTTTTACTG+TGG - chr4_2:70096343-70096362 Msa0619070:intron 20.0%
!!! GATTTAATTAGTTTTACTGT+GGG - chr4_2:70096344-70096363 Msa0619070:intron 20.0%
!!! ATTTAATTAGTTTTACTGTG+GGG - chr4_2:70096345-70096364 Msa0619070:intron 20.0%
!! AACTTTAACATATTTCACTT+AGG + chr4_2:70096657-70096676 None:intergenic 20.0%
!! TAAGTGAAATATGTTAAAGT+TGG - chr4_2:70096656-70096675 Msa0619070:intron 20.0%
!! AAAACATAAGAAATCCAAAA+GGG + chr4_2:70096881-70096900 None:intergenic 20.0%
!! AAAAACATAAGAAATCCAAA+AGG + chr4_2:70096882-70096901 None:intergenic 20.0%
!!! TTTTTTTTTGTTTGTGTTTC+AGG - chr4_2:70096901-70096920 Msa0619070:intron 20.0%
!! CTAATAAAAAATGTGTTAGA+TGG + chr4_2:70096963-70096982 None:intergenic 20.0%
!! CTTGGAAAGAATTAAAATTT+AGG + chr4_2:70097569-70097588 None:intergenic 20.0%
! GCGAATATATATTTCACAAA+AGG - chr4_2:70095240-70095259 Msa0619070:three_prime_UTR 25.0%
!!! AACATGGTTTGTTGAAATTA+AGG + chr4_2:70095435-70095454 None:intergenic 25.0%
! TGCACAGTTCAAAATAATTA+GGG + chr4_2:70095539-70095558 None:intergenic 25.0%
! TTGCACAGTTCAAAATAATT+AGG + chr4_2:70095540-70095559 None:intergenic 25.0%
!!! TCGATGATGTTTTTGAATTT+TGG + chr4_2:70095661-70095680 None:intergenic 25.0%
!!! TTGTAATTTTGATACAACCA+AGG - chr4_2:70095800-70095819 Msa0619070:CDS 25.0%
!!! TGTAATTTTGATACAACCAA+GGG - chr4_2:70095801-70095820 Msa0619070:CDS 25.0%
! AAATAACTATACAAAAGTGG+CGG - chr4_2:70096101-70096120 Msa0619070:intron 25.0%
! CAAAAGTAAAAAGGAAGTAA+AGG + chr4_2:70096196-70096215 None:intergenic 25.0%
! GTCGATTATCAAAAGTAAAA+AGG + chr4_2:70096205-70096224 None:intergenic 25.0%
!!! CAAGTTATGTTAGTTTTTCA+GGG - chr4_2:70096447-70096466 Msa0619070:intron 25.0%
!!! AAGTTCTTTTGAGAAAAAGA+GGG + chr4_2:70096585-70096604 None:intergenic 25.0%
!!! AAAGTTCTTTTGAGAAAAAG+AGG + chr4_2:70096586-70096605 None:intergenic 25.0%
!! TCTTTTTCTCAAAAGAACTT+TGG - chr4_2:70096585-70096604 Msa0619070:intron 25.0%
! ATTGTTTCAGAACAATTTGA+AGG - chr4_2:70097077-70097096 Msa0619070:intron 25.0%
TTACACGAGAAATTGAAGAA+CGG - chr4_2:70095265-70095284 Msa0619070:three_prime_UTR 30.0%
GAAAGAAAAGCTTACAAGAT+GGG + chr4_2:70095362-70095381 None:intergenic 30.0%
ATCATAGTTGAGTATGCTAA+TGG + chr4_2:70095484-70095503 None:intergenic 30.0%
CATACTCAACTATGATGTTT+AGG - chr4_2:70095488-70095507 Msa0619070:three_prime_UTR 30.0%
AAAATAATTAGGGCTAAGGA+TGG + chr4_2:70095529-70095548 None:intergenic 30.0%
GTTCAAAATAATTAGGGCTA+AGG + chr4_2:70095533-70095552 None:intergenic 30.0%
! CTTACACAATTAGGGATTTT+TGG + chr4_2:70095610-70095629 None:intergenic 30.0%
AAATCCCTAATTGTGTAAGA+CGG - chr4_2:70095611-70095630 Msa0619070:three_prime_UTR 30.0%
! AAACATCATCGAGTTTGTTT+AGG - chr4_2:70095669-70095688 Msa0619070:three_prime_UTR 30.0%
TGCATGAATATTGAATACGA+CGG + chr4_2:70095843-70095862 None:intergenic 30.0%
TCGTATTCAATATTCATGCA+AGG - chr4_2:70095843-70095862 Msa0619070:CDS 30.0%
!! ACCCTAATAGTTGTTATTTG+TGG - chr4_2:70095866-70095885 Msa0619070:CDS 30.0%
GCCACAAATAACAACTATTA+GGG + chr4_2:70095870-70095889 None:intergenic 30.0%
AGCCACAAATAACAACTATT+AGG + chr4_2:70095871-70095890 None:intergenic 30.0%
ACATTACAAAGCCATTAAGT+TGG - chr4_2:70096376-70096395 Msa0619070:intron 30.0%
!!! GCAAGTTATGTTAGTTTTTC+AGG - chr4_2:70096446-70096465 Msa0619070:intron 30.0%
!! AGTTCTTTTGAGAAAAAGAG+GGG + chr4_2:70096584-70096603 None:intergenic 30.0%
TCTTCAACATATGTAACACT+CGG + chr4_2:70096630-70096649 None:intergenic 30.0%
AGAAAATGGTCAAACTTCTA+AGG - chr4_2:70096695-70096714 Msa0619070:intron 30.0%
GAAAATGGTCAAACTTCTAA+GGG - chr4_2:70096696-70096715 Msa0619070:intron 30.0%
AAACTGATAGATTGAAGGTT+AGG + chr4_2:70096757-70096776 None:intergenic 30.0%
CTGTAAAACTGATAGATTGA+AGG + chr4_2:70096762-70096781 None:intergenic 30.0%
!!! AAAGGTTCACATTTTCAAGT+TGG + chr4_2:70096832-70096851 None:intergenic 30.0%
AAGGGTCAAATACAAATGAA+AGG + chr4_2:70096850-70096869 None:intergenic 30.0%
AAGTAACTGATATATCTGGA+GGG - chr4_2:70096924-70096943 Msa0619070:intron 30.0%
AGATATAAGCGACAAGTATA+CGG + chr4_2:70096999-70097018 None:intergenic 30.0%
ACAATCTTATGATTCCATGT+TGG - chr4_2:70097020-70097039 Msa0619070:intron 30.0%
GATTCCATGTTGGTATTATT+AGG - chr4_2:70097030-70097049 Msa0619070:intron 30.0%
CAGAACAATTTGAAGGAAAA+AGG - chr4_2:70097084-70097103 Msa0619070:intron 30.0%
ATTTGAAGGAAAAAGGCTAT+TGG - chr4_2:70097091-70097110 Msa0619070:intron 30.0%
AAATCCTTACAATATGTTGC+TGG - chr4_2:70097271-70097290 Msa0619070:intron 30.0%
AGTGCAACATAAAATTTGAG+TGG + chr4_2:70097335-70097354 None:intergenic 30.0%
AAACAATGCATGACTTATGA+AGG - chr4_2:70097497-70097516 Msa0619070:intron 30.0%
!! TCCTTTTCATTTTTCTTCTG+AGG - chr4_2:70097635-70097654 Msa0619070:CDS 30.0%
!! CCTTTTCATTTTTCTTCTGA+GGG - chr4_2:70097636-70097655 Msa0619070:CDS 30.0%
AAAAGCTTACAAGATGGGAA+GGG + chr4_2:70095357-70095376 None:intergenic 35.0%
GGAAAGAAAAGCTTACAAGA+TGG + chr4_2:70095363-70095382 None:intergenic 35.0%
CAAAGGAAAGGAACGAAATT+GGG + chr4_2:70095384-70095403 None:intergenic 35.0%
TCAAAGGAAAGGAACGAAAT+TGG + chr4_2:70095385-70095404 None:intergenic 35.0%
! AAGAGCGTAAATCAAAGGAA+AGG + chr4_2:70095396-70095415 None:intergenic 35.0%
! GTGAAAAGAGCGTAAATCAA+AGG + chr4_2:70095401-70095420 None:intergenic 35.0%
! GTGTCTTAGGTTAGTTAGTT+TGG + chr4_2:70095736-70095755 None:intergenic 35.0%
TAACTAACCTAAGACACTTG+AGG - chr4_2:70095739-70095758 Msa0619070:CDS 35.0%
GCATGAATATTGAATACGAC+GGG + chr4_2:70095842-70095861 None:intergenic 35.0%
!! AGTTGTTATTTGTGGCTATC+TGG - chr4_2:70095874-70095893 Msa0619070:CDS 35.0%
TTGAAACTGATTGTGTGATG+TGG + chr4_2:70096082-70096101 None:intergenic 35.0%
GCAACATAGTGAATTCACAT+TGG - chr4_2:70096131-70096150 Msa0619070:intron 35.0%
ATTGGATGTCAGTGTAAAAC+TGG - chr4_2:70096149-70096168 Msa0619070:intron 35.0%
TGTAAATAGGGCCAACTTAA+TGG + chr4_2:70096390-70096409 None:intergenic 35.0%
!! AGCTAAAGTTTTCAAGCAAC+AGG + chr4_2:70096486-70096505 None:intergenic 35.0%
CTTCATGCTGAAAGAACTTT+AGG - chr4_2:70096532-70096551 Msa0619070:intron 35.0%
CTTCATGCTGAAAGAGAAAA+TGG - chr4_2:70096681-70096700 Msa0619070:intron 35.0%
TCCAAAAGGGAAAAAGAGAA+GGG + chr4_2:70096868-70096887 None:intergenic 35.0%
ATCCAAAAGGGAAAAAGAGA+AGG + chr4_2:70096869-70096888 None:intergenic 35.0%
CAGGAAGTAACTGATATATC+TGG - chr4_2:70096920-70096939 Msa0619070:intron 35.0%
GAAGTAACTGATATATCTGG+AGG - chr4_2:70096923-70096942 Msa0619070:intron 35.0%
CACACCTAATAATACCAACA+TGG + chr4_2:70097037-70097056 None:intergenic 35.0%
CATGTTGGTATTATTAGGTG+TGG - chr4_2:70097035-70097054 Msa0619070:intron 35.0%
AAGGAAAAAGGCTATTGGAA+AGG - chr4_2:70097096-70097115 Msa0619070:intron 35.0%
! TGCTCTCTTTTGTACTTTCT+TGG - chr4_2:70097410-70097429 Msa0619070:intron 35.0%
! GCTCTCTTTTGTACTTTCTT+GGG - chr4_2:70097411-70097430 Msa0619070:intron 35.0%
GTATTGCTCAATAGAGATGA+AGG - chr4_2:70097433-70097452 Msa0619070:intron 35.0%
AACAAGTTAGTTCCACGTAA+AGG + chr4_2:70097597-70097616 None:intergenic 35.0%
CCCTCAGAAGAAAAATGAAA+AGG + chr4_2:70097639-70097658 None:intergenic 35.0%
! TAACCTTTGCTATAGTCATC+TGG - chr4_2:70097681-70097700 Msa0619070:five_prime_UTR 35.0%
ATATATCATGACAGCGAGTT+TGG - chr4_2:70097760-70097779 Msa0619070:five_prime_UTR 35.0%
GAAATTGAAGAACGGCAGAA+AGG - chr4_2:70095273-70095292 Msa0619070:three_prime_UTR 40.0%
GAAAAGCTTACAAGATGGGA+AGG + chr4_2:70095358-70095377 None:intergenic 40.0%
TTTGGATCTCCATTGCTAAG+TGG + chr4_2:70095592-70095611 None:intergenic 40.0%
GACACCGTCTTACACAATTA+GGG + chr4_2:70095618-70095637 None:intergenic 40.0%
TGACACCGTCTTACACAATT+AGG + chr4_2:70095619-70095638 None:intergenic 40.0%
ATTCAGTCCTCAAGTGTCTT+AGG + chr4_2:70095749-70095768 None:intergenic 40.0%
! GACTAGCGAAAGACACTTTT+AGG - chr4_2:70095770-70095789 Msa0619070:CDS 40.0%
TGAATATTGAATACGACGGG+CGG + chr4_2:70095839-70095858 None:intergenic 40.0%
AGAATTTAATGGCTGTGCAC+TGG - chr4_2:70096010-70096029 Msa0619070:intron 40.0%
GACAGTCTCTCATTAGATGT+CGG + chr4_2:70096053-70096072 None:intergenic 40.0%
ACCCTGCAGATGTGTAAATA+GGG + chr4_2:70096402-70096421 None:intergenic 40.0%
TACCCTGCAGATGTGTAAAT+AGG + chr4_2:70096403-70096422 None:intergenic 40.0%
!! AAGTTTTCAAGCAACAGGTC+CGG + chr4_2:70096481-70096500 None:intergenic 40.0%
AAGTAGCCAAGTAGATGGTT+CGG + chr4_2:70096515-70096534 None:intergenic 40.0%
! ACCCTTCTCTTTTTCCCTTT+TGG - chr4_2:70096864-70096883 Msa0619070:intron 40.0%
TATAAGCGACAAGTATACGG+TGG + chr4_2:70096996-70097015 None:intergenic 40.0%
!!! TGCTGTTTTTTCCACTGTTC+TGG + chr4_2:70097197-70097216 None:intergenic 40.0%
GTCCAACCAATCAAATTCTG+CGG - chr4_2:70097220-70097239 Msa0619070:intron 40.0%
ACTGCCAGCAACATATTGTA+AGG + chr4_2:70097278-70097297 None:intergenic 40.0%
TATGTTGCTGGCAGTATTTG+TGG - chr4_2:70097283-70097302 Msa0619070:intron 40.0%
! ACAAAGTGCTTGACTTTCAG+TGG - chr4_2:70097370-70097389 Msa0619070:intron 40.0%
! CAAAGTGCTTGACTTTCAGT+GGG - chr4_2:70097371-70097390 Msa0619070:intron 40.0%
! AAAGTGCTTGACTTTCAGTG+GGG - chr4_2:70097372-70097391 Msa0619070:intron 40.0%
TTCCAAGTTCAACCTTTACG+TGG - chr4_2:70097582-70097601 Msa0619070:intron 40.0%
TTCCACGTAAAGGTTGAACT+TGG + chr4_2:70097587-70097606 None:intergenic 40.0%
!! AACTTGTTGACTTGAAAGCG+TGG - chr4_2:70097609-70097628 Msa0619070:CDS 40.0%
!! ACTTGTTGACTTGAAAGCGT+GGG - chr4_2:70097610-70097629 Msa0619070:CDS 40.0%
ACTCGCTGTCATGATATATC+AGG + chr4_2:70097759-70097778 None:intergenic 40.0%
GGCAGAAAGGTCAGAGAAAT+GGG - chr4_2:70095286-70095305 Msa0619070:three_prime_UTR 45.0%
CAGAGAAATGGGTGTGACAA+AGG - chr4_2:70095297-70095316 Msa0619070:three_prime_UTR 45.0%
AAGATGGGAAGGGTTGAGTT+TGG + chr4_2:70095347-70095366 None:intergenic 45.0%
! TGCTTCATGCCACTTAGCAA+TGG - chr4_2:70095580-70095599 Msa0619070:three_prime_UTR 45.0%
! GACTCGTGAAGTTTTCACAC+TGG - chr4_2:70095963-70095982 Msa0619070:intron 45.0%
GCCCTATTTACACATCTGCA+GGG - chr4_2:70096398-70096417 Msa0619070:intron 45.0%
!!! GTTTTTCAGGGTTCGAACTC+CGG - chr4_2:70096459-70096478 Msa0619070:intron 45.0%
CATCAACCGAACCATCTACT+TGG - chr4_2:70096506-70096525 Msa0619070:intron 45.0%
GCATGAAGTAGCCAAGTAGA+TGG + chr4_2:70096520-70096539 None:intergenic 45.0%
!! GCTATTGGAAAGGCATCGAA+TGG - chr4_2:70097106-70097125 Msa0619070:intron 45.0%
CTCTTTCATTTCCTCCTCCA+AGG + chr4_2:70097141-70097160 None:intergenic 45.0%
AAGCTGTAACTCCAGAACAG+TGG - chr4_2:70097183-70097202 Msa0619070:intron 45.0%
TCTAGGCCGCAGAATTTGAT+TGG + chr4_2:70097229-70097248 None:intergenic 45.0%
CCTCCAGATGACTATAGCAA+AGG + chr4_2:70097687-70097706 None:intergenic 45.0%
! CCTTTGCTATAGTCATCTGG+AGG - chr4_2:70097684-70097703 Msa0619070:five_prime_UTR 45.0%
GACATAGCGACACTCACTAA+AGG + chr4_2:70097737-70097756 None:intergenic 45.0%
CGGCAGAAAGGTCAGAGAAA+TGG - chr4_2:70095285-70095304 Msa0619070:three_prime_UTR 50.0%
ATACAAAAGTGGCGGCGACA+TGG - chr4_2:70096109-70096128 Msa0619070:intron 50.0%
GGCCCTATTTACACATCTGC+AGG - chr4_2:70096397-70096416 Msa0619070:intron 50.0%
TCGAATGGTGAATGCTGCCT+TGG - chr4_2:70097121-70097140 Msa0619070:intron 50.0%
AATGGTGAATGCTGCCTTGG+AGG - chr4_2:70097124-70097143 Msa0619070:intron 50.0%
GGCCGCAGAATTTGATTGGT+TGG + chr4_2:70097225-70097244 None:intergenic 50.0%
ATCGATCCGCGTGTGAGCAA+CGG - chr4_2:70095206-70095225 Msa0619070:three_prime_UTR 55.0%
AACTTGCCGTTGCTCACACG+CGG + chr4_2:70095215-70095234 None:intergenic 55.0%
! GCGGTGTCAATGTAGTCCCT+TGG + chr4_2:70095820-70095839 None:intergenic 55.0%
GGTGAATGCTGCCTTGGAGG+AGG - chr4_2:70097127-70097146 Msa0619070:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 70095179 70097786 70095179 ID=Msa0619070;Name=Msa0619070
chr4_2 mRNA 70095179 70097786 70095179 ID=Msa0619070-mRNA-1;Parent=Msa0619070;Name=Msa0619070-mRNA-1;_AED=0.20;_eAED=0.20;_QI=125|1|1|1|1|1|3|539|93
chr4_2 exon 70095179 70095913 70095179 ID=Msa0619070-mRNA-1:exon:20394;Parent=Msa0619070-mRNA-1
chr4_2 exon 70096020 70096042 70096020 ID=Msa0619070-mRNA-1:exon:20393;Parent=Msa0619070-mRNA-1
chr4_2 exon 70097599 70097786 70097599 ID=Msa0619070-mRNA-1:exon:20392;Parent=Msa0619070-mRNA-1
chr4_2 five_prime_UTR 70097662 70097786 70097662 ID=Msa0619070-mRNA-1:five_prime_utr;Parent=Msa0619070-mRNA-1
chr4_2 CDS 70097599 70097661 70097599 ID=Msa0619070-mRNA-1:cds;Parent=Msa0619070-mRNA-1
chr4_2 CDS 70096020 70096042 70096020 ID=Msa0619070-mRNA-1:cds;Parent=Msa0619070-mRNA-1
chr4_2 CDS 70095718 70095913 70095718 ID=Msa0619070-mRNA-1:cds;Parent=Msa0619070-mRNA-1
chr4_2 three_prime_UTR 70095179 70095717 70095179 ID=Msa0619070-mRNA-1:three_prime_utr;Parent=Msa0619070-mRNA-1
Gene Sequence

>Msa0619070

ATGGGTGTGACAAAGGAACAAGTCGAATCATCTTTGAACTCCAAACTCAACCCTTCCCATCTTGAAGTAACTGATATATCTGGAGGGTGTGGCTCAAGTTTTGCAGTTGAGATTGTTTCAGAACAATTTGAAGGAAAAAGGCTATTGGAAAGGCATCGAATGGTGAATGCTGCCTTGGAGGAGGAAATGAAAGAGATTCATGCACTCTCTGTAAAGAAAGCTGTAACTCCAGAACAGTGGAAAAAACAGCAAGAGTCCAACCAATCAAATTCTGCGGCCTAG

Protein sequence

>Msa0619070

MGVTKEQVESSLNSKLNPSHLEVTDISGGCGSSFAVEIVSEQFEGKRLLERHRMVNAALEEEMKEIHALSVKKAVTPEQWKKQQESNQSNSAA*