Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640180 | XP_013455606.1 | 96.266 | 482 | 12 | 1 | 1 | 482 | 1 | 476 | 0.0 | 968 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0584450 | Msa0640180 | 0.813630 | 2.322128e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640180 | MtrunA17_Chr4g0023991 | 96.266 | 482 | 12 | 1 | 1 | 482 | 1 | 476 | 0.0 | 968 |
| Msa0640180 | MtrunA17_Chr2g0322991 | 63.711 | 485 | 148 | 7 | 9 | 482 | 6 | 473 | 0.0 | 583 |
| Msa0640180 | MtrunA17_Chr4g0024001 | 51.261 | 476 | 206 | 8 | 4 | 479 | 26 | 475 | 2.08e-161 | 465 |
| Msa0640180 | MtrunA17_Chr8g0348511 | 43.789 | 475 | 245 | 10 | 16 | 479 | 24 | 487 | 4.72e-128 | 380 |
| Msa0640180 | MtrunA17_Chr8g0387371 | 44.471 | 425 | 212 | 8 | 63 | 478 | 105 | 514 | 2.57e-124 | 372 |
| Msa0640180 | MtrunA17_Chr2g0327551 | 44.419 | 430 | 212 | 8 | 59 | 478 | 41 | 453 | 6.30e-123 | 366 |
| Msa0640180 | MtrunA17_Chr7g0239421 | 42.759 | 435 | 212 | 9 | 63 | 479 | 92 | 507 | 2.12e-120 | 362 |
| Msa0640180 | MtrunA17_Chr3g0112211 | 41.315 | 426 | 235 | 5 | 56 | 479 | 75 | 487 | 5.64e-119 | 357 |
| Msa0640180 | MtrunA17_Chr4g0030331 | 45.153 | 392 | 208 | 5 | 59 | 446 | 103 | 491 | 3.85e-118 | 356 |
| Msa0640180 | MtrunA17_Chr5g0395861 | 37.471 | 427 | 247 | 6 | 59 | 477 | 121 | 535 | 4.57e-94 | 295 |
| Msa0640180 | MtrunA17_Chr5g0397301 | 50.455 | 220 | 96 | 4 | 54 | 263 | 64 | 280 | 2.08e-68 | 221 |
| Msa0640180 | MtrunA17_Chr7g0248241 | 49.778 | 225 | 110 | 3 | 39 | 262 | 68 | 290 | 2.45e-68 | 221 |
| Msa0640180 | MtrunA17_Chr5g0397311 | 40.000 | 220 | 117 | 7 | 264 | 478 | 22 | 231 | 6.77e-42 | 149 |
| Msa0640180 | MtrunA17_Chr7g0248231 | 39.053 | 169 | 99 | 3 | 264 | 429 | 4 | 171 | 6.33e-35 | 129 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0640180 | AT1G05280.1 | 54.583 | 480 | 195 | 9 | 13 | 482 | 24 | 490 | 0.0 | 523 |
| Msa0640180 | AT1G05280.2 | 55.149 | 437 | 181 | 7 | 13 | 441 | 24 | 453 | 5.22e-168 | 482 |
| Msa0640180 | AT4G15240.1 | 45.788 | 463 | 239 | 6 | 18 | 479 | 33 | 484 | 8.14e-145 | 424 |
| Msa0640180 | AT1G01570.1 | 44.493 | 454 | 233 | 8 | 37 | 478 | 26 | 472 | 5.47e-128 | 380 |
| Msa0640180 | AT1G01570.2 | 44.493 | 454 | 233 | 8 | 37 | 478 | 57 | 503 | 1.84e-127 | 380 |
| Msa0640180 | AT4G23490.1 | 46.620 | 429 | 201 | 9 | 63 | 478 | 109 | 522 | 2.80e-127 | 380 |
| Msa0640180 | AT5G41460.1 | 45.283 | 424 | 215 | 8 | 62 | 479 | 109 | 521 | 9.69e-124 | 371 |
| Msa0640180 | AT4G11350.1 | 44.875 | 439 | 211 | 10 | 56 | 478 | 80 | 503 | 4.74e-122 | 366 |
| Msa0640180 | AT2G37730.1 | 39.615 | 467 | 265 | 5 | 12 | 471 | 45 | 501 | 4.04e-116 | 352 |
| Msa0640180 | AT1G07850.1 | 44.811 | 424 | 214 | 8 | 62 | 478 | 122 | 532 | 8.40e-113 | 343 |
| Msa0640180 | AT4G00295.1 | 48.974 | 341 | 164 | 5 | 60 | 392 | 75 | 413 | 7.36e-108 | 328 |
| Msa0640180 | AT3G11420.1 | 39.161 | 429 | 235 | 9 | 63 | 479 | 91 | 505 | 8.25e-108 | 330 |
| Msa0640180 | AT1G33250.1 | 39.524 | 420 | 243 | 6 | 58 | 473 | 124 | 536 | 2.33e-105 | 325 |
| Msa0640180 | AT5G12460.1 | 34.722 | 432 | 248 | 8 | 59 | 479 | 32 | 440 | 2.55e-86 | 272 |
| Msa0640180 | AT4G11350.2 | 50.224 | 223 | 103 | 3 | 56 | 271 | 80 | 301 | 3.29e-68 | 221 |
Find 102 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATAGTGTAAAAGTATT+AGG | 0.139151 | 4_3:+38073324 | Msa0640180:three_prime_UTR |
| GAAAATGAATATTGTGAATA+TGG | 0.172759 | 4_3:-38070576 | None:intergenic |
| AGTTGATGAGATTGTAAATT+AGG | 0.208385 | 4_3:+38073251 | Msa0640180:three_prime_UTR |
| CAGAATCGGTTGTTTGGTTT+TGG | 0.208966 | 4_3:+38071218 | Msa0640180:CDS |
| ACACTATCAGAGAAACAAAA+AGG | 0.228221 | 4_3:-38073312 | None:intergenic |
| AACATTCAAGCAGTGGAAAA+AGG | 0.233460 | 4_3:+38072273 | Msa0640180:CDS |
| TTCATCTCTTGCTAAGGTTT+TGG | 0.236987 | 4_3:+38071274 | Msa0640180:CDS |
| ACCCTTGATACATTATATAT+TGG | 0.239113 | 4_3:-38073219 | None:intergenic |
| TCAAAATTGCTCAAAGGATT+TGG | 0.247836 | 4_3:+38072435 | Msa0640180:CDS |
| TTGATGACTTCTAGTTTCTT+TGG | 0.255302 | 4_3:-38072463 | None:intergenic |
| ATGAAACAGGTTGATTTAAC+TGG | 0.275394 | 4_3:+38071980 | Msa0640180:intron |
| ATAATTCCATGTGAAAATTA+AGG | 0.278129 | 4_3:-38070439 | None:intergenic |
| TCCGGGTGGCGCGTGTTGTC+GGG | 0.301680 | 4_3:+38071045 | Msa0640180:CDS |
| ACATCACAACAATGCCTTCT+TGG | 0.314415 | 4_3:-38073082 | None:intergenic |
| GTATTATAAACAGTTATTAT+AGG | 0.330226 | 4_3:+38072404 | Msa0640180:CDS |
| GAAAGGTATCCTCATCTATA+TGG | 0.333313 | 4_3:+38071320 | Msa0640180:CDS |
| ATCCGGGTGGCGCGTGTTGT+CGG | 0.335456 | 4_3:+38071044 | Msa0640180:CDS |
| GTTTCTCACGCCGTGGATTA+CGG | 0.343663 | 4_3:+38070498 | Msa0640180:five_prime_UTR |
| ACTCTAGATGATATTGTGTT+TGG | 0.352904 | 4_3:+38070819 | Msa0640180:CDS |
| TTACTGGATGTGCAGCTAAT+AGG | 0.354643 | 4_3:-38072015 | None:intergenic |
| CTTGTATCAGTACTAATATT+AGG | 0.360904 | 4_3:+38070714 | Msa0640180:CDS |
| CATGAGCTTTGGTATTATAT+AGG | 0.361732 | 4_3:+38071173 | Msa0640180:CDS |
| GTTGTCATGTTTGGAAAGAT+TGG | 0.361872 | 4_3:-38072076 | None:intergenic |
| GATTTAACTGGAAATACCTT+TGG | 0.367215 | 4_3:+38071992 | Msa0640180:CDS |
| CTGATAGTGTAAAAGTATTA+GGG | 0.371530 | 4_3:+38073325 | Msa0640180:three_prime_UTR |
| AATGTGAAGTGGTATGTATT+TGG | 0.373161 | 4_3:+38071092 | Msa0640180:CDS |
| ACAACCCTTCATTGCATTGT+TGG | 0.373372 | 4_3:-38070904 | None:intergenic |
| AATGAAGGGTTGTGTGTTCT+TGG | 0.376173 | 4_3:+38070914 | Msa0640180:CDS |
| AGAGACAGTAAGGGAGTTAC+TGG | 0.382398 | 4_3:-38072031 | None:intergenic |
| CAAAATATGATCATGAGCTT+TGG | 0.385050 | 4_3:+38071162 | Msa0640180:CDS |
| TTGCTTCAAGCAAGAGTTCA+TGG | 0.388430 | 4_3:+38070844 | Msa0640180:CDS |
| CTTTGCAAGTGTATCGAAAC+CGG | 0.388738 | 4_3:-38071004 | None:intergenic |
| TATTTCGATAGCGTCTCTTC+TGG | 0.390501 | 4_3:+38072373 | Msa0640180:CDS |
| TAGTTACCTGTTTGATATCA+AGG | 0.395977 | 4_3:-38072507 | None:intergenic |
| GCTTGTGTAGTTGTCATGTT+TGG | 0.397468 | 4_3:-38072085 | None:intergenic |
| CTTCACATTTGAATGATTCA+AGG | 0.400530 | 4_3:-38071078 | None:intergenic |
| AAAACACTTGGTCACATCAT+AGG | 0.404875 | 4_3:-38073191 | None:intergenic |
| TACGAGCAGAATCGGTTGTT+TGG | 0.409803 | 4_3:+38071212 | Msa0640180:CDS |
| GAAAGGAGTATGTGAAACTA+TGG | 0.414791 | 4_3:+38070874 | Msa0640180:CDS |
| TCGAAACCGGGAAGTGTCTT+CGG | 0.416371 | 4_3:-38070991 | None:intergenic |
| CTCAAGTGCTAGTGACCAAC+TGG | 0.419998 | 4_3:+38073111 | Msa0640180:CDS |
| ATCCAATATATAATGTATCA+AGG | 0.420906 | 4_3:+38073217 | Msa0640180:three_prime_UTR |
| CATGGACAATTTCAGTGTCA+TGG | 0.422607 | 4_3:+38072188 | Msa0640180:CDS |
| GTGTCTCCGAAGACACTTCC+CGG | 0.425037 | 4_3:+38070985 | Msa0640180:CDS |
| GAGGGCTTAGATCAGCTATC+CGG | 0.439343 | 4_3:+38071027 | Msa0640180:CDS |
| AAGATTGGATCTGTGTAATC+TGG | 0.442009 | 4_3:-38072061 | None:intergenic |
| CTGAGATTTACGAGCAGAAT+CGG | 0.447733 | 4_3:+38071204 | Msa0640180:CDS |
| GAAAACCAACAATGCAATGA+AGG | 0.452615 | 4_3:+38070899 | Msa0640180:CDS |
| TATTCATGTTTAGCTGAACT+TGG | 0.453154 | 4_3:+38071359 | Msa0640180:CDS |
| ATGGACAATTTCAGTGTCAT+GGG | 0.456001 | 4_3:+38072189 | Msa0640180:CDS |
| CATAGAGGAGGAAGAGAAGA+AGG | 0.462515 | 4_3:-38070963 | None:intergenic |
| TGTTTAGCTGAACTTGGTGT+TGG | 0.467552 | 4_3:+38071365 | Msa0640180:CDS |
| AGAGTCTTCACCAAATTCTC+CGG | 0.470157 | 4_3:-38071137 | None:intergenic |
| TGGATGATGCAGAGACAGTA+AGG | 0.476779 | 4_3:-38072041 | None:intergenic |
| GCTAGACCTTGATATCAAAC+AGG | 0.484491 | 4_3:+38072501 | Msa0640180:CDS |
| TATTAGTTCATCTCTTGCTA+AGG | 0.494347 | 4_3:+38071268 | Msa0640180:CDS |
| TTAGTAACATCTTCAGTTTG+TGG | 0.495877 | 4_3:+38070681 | Msa0640180:CDS |
| AACAAACAATTTGCTATGAC+AGG | 0.499949 | 4_3:+38072158 | Msa0640180:CDS |
| TTTGTTACCTGATGGAAACC+TGG | 0.503363 | 4_3:-38071401 | None:intergenic |
| CAGTTGGTCACTAGCACTTG+AGG | 0.504072 | 4_3:-38073110 | None:intergenic |
| CCCCGACAACACGCGCCACC+CGG | 0.510224 | 4_3:-38071046 | None:intergenic |
| CGGTTTCGATACACTTGCAA+AGG | 0.513737 | 4_3:+38071005 | Msa0640180:CDS |
| CTCTAACAGCAATTTCCAGT+TGG | 0.524734 | 4_3:-38073126 | None:intergenic |
| CCGGGTGGCGCGTGTTGTCG+GGG | 0.530028 | 4_3:+38071046 | Msa0640180:CDS |
| AGGGCTTAGATCAGCTATCC+GGG | 0.532992 | 4_3:+38071028 | Msa0640180:CDS |
| TCTCGCGCATTCACAACATC+CGG | 0.534501 | 4_3:-38072250 | None:intergenic |
| GAGTTCATGGACAAAGAGAA+AGG | 0.541475 | 4_3:+38070857 | Msa0640180:CDS |
| AGTTGGTCACTAGCACTTGA+GGG | 0.543154 | 4_3:-38073109 | None:intergenic |
| TCCATGTGAAAATTAAGGTA+AGG | 0.547198 | 4_3:-38070434 | None:intergenic |
| TTCGATACACTTGCAAAGGA+GGG | 0.547344 | 4_3:+38071009 | Msa0640180:CDS |
| TTACTCAAAACGTCAAAGCT+AGG | 0.548214 | 4_3:+38070465 | Msa0640180:five_prime_UTR |
| TTTCGATACACTTGCAAAGG+AGG | 0.552842 | 4_3:+38071008 | Msa0640180:CDS |
| GAGTCTTCACCAAATTCTCC+GGG | 0.555356 | 4_3:-38071136 | None:intergenic |
| TGTGAAAATTAAGGTAAGGT+AGG | 0.557527 | 4_3:-38070430 | None:intergenic |
| CGCGAGAAACATTCAAGCAG+TGG | 0.559585 | 4_3:+38072266 | Msa0640180:CDS |
| TTCAGTTGCAGGCTCCAAGA+AGG | 0.560994 | 4_3:+38073068 | Msa0640180:intron |
| CCTCATCTATATGGAAGTGA+TGG | 0.561800 | 4_3:+38071329 | Msa0640180:CDS |
| TCTATATGGAAGTGATGGTA+GGG | 0.563146 | 4_3:+38071334 | Msa0640180:CDS |
| ACATGAACCAGGTTTCCATC+AGG | 0.563922 | 4_3:+38071394 | Msa0640180:CDS |
| AGGAGTATGTGAAACTATGG+TGG | 0.566032 | 4_3:+38070877 | Msa0640180:CDS |
| TCCAATATATAATGTATCAA+GGG | 0.567438 | 4_3:+38073218 | Msa0640180:three_prime_UTR |
| CAGTAAATGTTGATTCTCAA+AGG | 0.567820 | 4_3:+38072128 | Msa0640180:CDS |
| TTACAAGGATCAGGGTGAAG+TGG | 0.568617 | 4_3:-38072334 | None:intergenic |
| TGAATCATTCAAATGTGAAG+TGG | 0.573727 | 4_3:+38071081 | Msa0640180:CDS |
| ATCTATATGGAAGTGATGGT+AGG | 0.582221 | 4_3:+38071333 | Msa0640180:CDS |
| GTTTGTTGTTTCTCACGCCG+TGG | 0.598986 | 4_3:+38070491 | Msa0640180:five_prime_UTR |
| AGCGTCTCTTCTGGTAAAGA+CGG | 0.601810 | 4_3:+38072382 | Msa0640180:CDS |
| AAACAATTTGCTATGACAGG+TGG | 0.605130 | 4_3:+38072161 | Msa0640180:CDS |
| GAAACTAGAAGTCATCAAAG+TGG | 0.613370 | 4_3:+38072468 | Msa0640180:CDS |
| AAGTGAGGCACCGTAATCCA+CGG | 0.620573 | 4_3:-38070508 | None:intergenic |
| GTGTCTTCGGAGACACATAG+AGG | 0.621246 | 4_3:-38070978 | None:intergenic |
| GTTGGATTGACACATGAACC+AGG | 0.627174 | 4_3:+38071383 | Msa0640180:CDS |
| TTTGCAAGTGTATCGAAACC+GGG | 0.633456 | 4_3:-38071003 | None:intergenic |
| TGGACAATTTCAGTGTCATG+GGG | 0.639158 | 4_3:+38072190 | Msa0640180:CDS |
| CCATCACTTCCATATAGATG+AGG | 0.641487 | 4_3:-38071329 | None:intergenic |
| AAAACCAACAATGCAATGAA+GGG | 0.642497 | 4_3:+38070900 | Msa0640180:CDS |
| ATAGAGGAGGAAGAGAAGAA+GGG | 0.654986 | 4_3:-38070962 | None:intergenic |
| GGATGATGCAGAGACAGTAA+GGG | 0.659335 | 4_3:-38072040 | None:intergenic |
| CTATATAATCAAGCAAAGTG+AGG | 0.662033 | 4_3:-38070523 | None:intergenic |
| ATGTGCAGCTAATAGGCCAA+AGG | 0.674308 | 4_3:-38072008 | None:intergenic |
| TCTTCGGAGACACATAGAGG+AGG | 0.694314 | 4_3:-38070975 | None:intergenic |
| GCTTAGATCAGCTATCCGGG+TGG | 0.738017 | 4_3:+38071031 | Msa0640180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGAGTAATTTATTTT+TGG | + | chr4_3:38071461-38071480 | Msa0640180:intron | 10.0% |
| !! | GTATTATAAACAGTTATTAT+AGG | + | chr4_3:38072404-38072423 | Msa0640180:CDS | 15.0% |
| !!! | TTTTTGAAATGCATTTTTTT+TGG | + | chr4_3:38072604-38072623 | Msa0640180:intron | 15.0% |
| !! | ATAATTCCATGTGAAAATTA+AGG | - | chr4_3:38070442-38070461 | None:intergenic | 20.0% |
| !! | GAAAATGAATATTGTGAATA+TGG | - | chr4_3:38070579-38070598 | None:intergenic | 20.0% |
| !!! | TTTGAGTAATTTATTTTTGG+TGG | + | chr4_3:38071464-38071483 | Msa0640180:intron | 20.0% |
| !!! | ACAGATCATTTTAGATTTTA+TGG | + | chr4_3:38071871-38071890 | Msa0640180:intron | 20.0% |
| !! | ACAAAAACTATGCATTAATT+AGG | - | chr4_3:38071951-38071970 | None:intergenic | 20.0% |
| !!! | TAATTAATGCATAGTTTTTG+TGG | + | chr4_3:38071950-38071969 | Msa0640180:intron | 20.0% |
| !! | CAAGATATACCATAATTAAA+CGG | - | chr4_3:38072542-38072561 | None:intergenic | 20.0% |
| !! | TTTGCTGATAAAATAAGATA+AGG | + | chr4_3:38072570-38072589 | Msa0640180:intron | 20.0% |
| !! | AAATGCATTTCAAAAACTTT+CGG | - | chr4_3:38072600-38072619 | None:intergenic | 20.0% |
| !!! | AACATTGTTTTTCTTGTTTA+TGG | + | chr4_3:38072846-38072865 | Msa0640180:intron | 20.0% |
| !! | ATATTGGATTAAAAAACACT+TGG | - | chr4_3:38073206-38073225 | None:intergenic | 20.0% |
| !! | ATCCAATATATAATGTATCA+AGG | + | chr4_3:38073217-38073236 | Msa0640180:three_prime_UTR | 20.0% |
| !! | TCCAATATATAATGTATCAA+GGG | + | chr4_3:38073218-38073237 | Msa0640180:three_prime_UTR | 20.0% |
| ! | CTTGTATCAGTACTAATATT+AGG | + | chr4_3:38070714-38070733 | Msa0640180:CDS | 25.0% |
| !!! | AGTTGTGTTTGTTTTTTTGA+TGG | - | chr4_3:38070802-38070821 | None:intergenic | 25.0% |
| !!! | TAAGGTTTTTGATTCTTGTT+TGG | + | chr4_3:38071298-38071317 | Msa0640180:CDS | 25.0% |
| !!! | TTTTTGATTCTTGTTTGGAA+AGG | + | chr4_3:38071303-38071322 | Msa0640180:CDS | 25.0% |
| !! | ATTAACTATTTGTTACCTGA+TGG | - | chr4_3:38071412-38071431 | None:intergenic | 25.0% |
| !!! | GTAATTTATTTTTGGTGGAA+TGG | + | chr4_3:38071469-38071488 | Msa0640180:intron | 25.0% |
| ! | TTTCTCTTTCGTTAATTTCA+GGG | - | chr4_3:38071540-38071559 | None:intergenic | 25.0% |
| ! | ATTTCTCTTTCGTTAATTTC+AGG | - | chr4_3:38071541-38071560 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCATG+TGG | + | chr4_3:38071605-38071624 | Msa0640180:intron | 25.0% |
| !! | TGATTGGTTAAAATTCATGT+GGG | + | chr4_3:38071606-38071625 | Msa0640180:intron | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | - | chr4_3:38071673-38071692 | None:intergenic | 25.0% |
| !! | ATTTTATGGACCAAATAACT+CGG | + | chr4_3:38071885-38071904 | Msa0640180:intron | 25.0% |
| ! | CATTAATTAGGCTCATTAAA+GGG | - | chr4_3:38071939-38071958 | None:intergenic | 25.0% |
| !! | AAGATAGTAGATCTTTTACA+AGG | - | chr4_3:38072352-38072371 | None:intergenic | 25.0% |
| !! | ATCTTTTCAAAATTGCTCAA+AGG | + | chr4_3:38072429-38072448 | Msa0640180:CDS | 25.0% |
| ! | TTTGTGAATCCGTTTAATTA+TGG | + | chr4_3:38072530-38072549 | Msa0640180:intron | 25.0% |
| !!! | TTTTTTGGTAAACCTGTTAT+TGG | + | chr4_3:38072619-38072638 | Msa0640180:intron | 25.0% |
| ! | AAAAACCCTGAAAAAATTTG+CGG | - | chr4_3:38072998-38073017 | None:intergenic | 25.0% |
| !!! | CAAATTTTTTCAGGGTTTTT+AGG | + | chr4_3:38072998-38073017 | Msa0640180:intron | 25.0% |
| !!! | TTTTATTTGATTTCAGTTGC+AGG | + | chr4_3:38073057-38073076 | Msa0640180:intron | 25.0% |
| ! | ACCCTTGATACATTATATAT+TGG | - | chr4_3:38073222-38073241 | None:intergenic | 25.0% |
| !!! | AGTTGATGAGATTGTAAATT+AGG | + | chr4_3:38073251-38073270 | Msa0640180:three_prime_UTR | 25.0% |
| !!! | TCTGATAGTGTAAAAGTATT+AGG | + | chr4_3:38073324-38073343 | Msa0640180:three_prime_UTR | 25.0% |
| !!! | CTGATAGTGTAAAAGTATTA+GGG | + | chr4_3:38073325-38073344 | Msa0640180:three_prime_UTR | 25.0% |
| TGTGAAAATTAAGGTAAGGT+AGG | - | chr4_3:38070433-38070452 | None:intergenic | 30.0% | |
| ! | ACCTTACCTTAATTTTCACA+TGG | + | chr4_3:38070433-38070452 | Msa0640180:five_prime_UTR | 30.0% |
| TCCATGTGAAAATTAAGGTA+AGG | - | chr4_3:38070437-38070456 | None:intergenic | 30.0% | |
| CTATATAATCAAGCAAAGTG+AGG | - | chr4_3:38070526-38070545 | None:intergenic | 30.0% | |
| TTAGTAACATCTTCAGTTTG+TGG | + | chr4_3:38070681-38070700 | Msa0640180:CDS | 30.0% | |
| ACTCTAGATGATATTGTGTT+TGG | + | chr4_3:38070819-38070838 | Msa0640180:CDS | 30.0% | |
| AAAACCAACAATGCAATGAA+GGG | + | chr4_3:38070900-38070919 | Msa0640180:CDS | 30.0% | |
| CTTCACATTTGAATGATTCA+AGG | - | chr4_3:38071081-38071100 | None:intergenic | 30.0% | |
| TGAATCATTCAAATGTGAAG+TGG | + | chr4_3:38071081-38071100 | Msa0640180:CDS | 30.0% | |
| AATGTGAAGTGGTATGTATT+TGG | + | chr4_3:38071092-38071111 | Msa0640180:CDS | 30.0% | |
| CAAAATATGATCATGAGCTT+TGG | + | chr4_3:38071162-38071181 | Msa0640180:CDS | 30.0% | |
| ! | CATGAGCTTTGGTATTATAT+AGG | + | chr4_3:38071173-38071192 | Msa0640180:CDS | 30.0% |
| TATTAGTTCATCTCTTGCTA+AGG | + | chr4_3:38071268-38071287 | Msa0640180:CDS | 30.0% | |
| TATTCATGTTTAGCTGAACT+TGG | + | chr4_3:38071359-38071378 | Msa0640180:CDS | 30.0% | |
| ATGTAGGTCCCATATAAATT+TGG | - | chr4_3:38071637-38071656 | None:intergenic | 30.0% | |
| ! | TCTAACACACTCTTTTTGAT+TGG | - | chr4_3:38071688-38071707 | None:intergenic | 30.0% |
| ATATGAGAATTTCGTTAACG+AGG | - | chr4_3:38071743-38071762 | None:intergenic | 30.0% | |
| AACAAAAATAACCATCCAGA+AGG | - | chr4_3:38071800-38071819 | None:intergenic | 30.0% | |
| !! | ATTCTAGAATCCGAGTTATT+TGG | - | chr4_3:38071898-38071917 | None:intergenic | 30.0% |
| GCATTAATTAGGCTCATTAA+AGG | - | chr4_3:38071940-38071959 | None:intergenic | 30.0% | |
| TTGTGGTTATGAAATGAAAC+AGG | + | chr4_3:38071967-38071986 | Msa0640180:intron | 30.0% | |
| !! | ATGAAACAGGTTGATTTAAC+TGG | + | chr4_3:38071980-38071999 | Msa0640180:intron | 30.0% |
| GATTTAACTGGAAATACCTT+TGG | + | chr4_3:38071992-38072011 | Msa0640180:CDS | 30.0% | |
| !! | CAGTAAATGTTGATTCTCAA+AGG | + | chr4_3:38072128-38072147 | Msa0640180:CDS | 30.0% |
| !! | AACAAACAATTTGCTATGAC+AGG | + | chr4_3:38072158-38072177 | Msa0640180:CDS | 30.0% |
| ! | TAGATCTTTTACAAGGATCA+GGG | - | chr4_3:38072345-38072364 | None:intergenic | 30.0% |
| TCAAAATTGCTCAAAGGATT+TGG | + | chr4_3:38072435-38072454 | Msa0640180:CDS | 30.0% | |
| !! | TTGATGACTTCTAGTTTCTT+TGG | - | chr4_3:38072466-38072485 | None:intergenic | 30.0% |
| TAGTTACCTGTTTGATATCA+AGG | - | chr4_3:38072510-38072529 | None:intergenic | 30.0% | |
| !!! | TCAGTTTTAACTTCGTGTTT+GGG | - | chr4_3:38072950-38072969 | None:intergenic | 30.0% |
| !!! | TTCAGTTTTAACTTCGTGTT+TGG | - | chr4_3:38072951-38072970 | None:intergenic | 30.0% |
| !!! | ATTTTTTCAGGGTTTTTAGG+AGG | + | chr4_3:38073001-38073020 | Msa0640180:intron | 30.0% |
| ACTATCAGAGAAACAAAAAG+GGG | - | chr4_3:38073313-38073332 | None:intergenic | 30.0% | |
| CACTATCAGAGAAACAAAAA+GGG | - | chr4_3:38073314-38073333 | None:intergenic | 30.0% | |
| ACACTATCAGAGAAACAAAA+AGG | - | chr4_3:38073315-38073334 | None:intergenic | 30.0% | |
| TTACTCAAAACGTCAAAGCT+AGG | + | chr4_3:38070465-38070484 | Msa0640180:five_prime_UTR | 35.0% | |
| ! | GAAAGGAGTATGTGAAACTA+TGG | + | chr4_3:38070874-38070893 | Msa0640180:CDS | 35.0% |
| GAAAACCAACAATGCAATGA+AGG | + | chr4_3:38070899-38070918 | Msa0640180:CDS | 35.0% | |
| !!! | TTTGGTTTTGGAATGGCTTT+TGG | + | chr4_3:38071230-38071249 | Msa0640180:CDS | 35.0% |
| ! | TTCATCTCTTGCTAAGGTTT+TGG | + | chr4_3:38071274-38071293 | Msa0640180:CDS | 35.0% |
| !! | GAAAGGTATCCTCATCTATA+TGG | + | chr4_3:38071320-38071339 | Msa0640180:CDS | 35.0% |
| ATCTATATGGAAGTGATGGT+AGG | + | chr4_3:38071333-38071352 | Msa0640180:CDS | 35.0% | |
| TCTATATGGAAGTGATGGTA+GGG | + | chr4_3:38071334-38071353 | Msa0640180:CDS | 35.0% | |
| TTCAACACACTCTCTTTGAT+TGG | + | chr4_3:38071590-38071609 | Msa0640180:intron | 35.0% | |
| AGGTCCCATATAAATTTGGT+GGG | - | chr4_3:38071633-38071652 | None:intergenic | 35.0% | |
| TAGGTCCCATATAAATTTGG+TGG | - | chr4_3:38071634-38071653 | None:intergenic | 35.0% | |
| TATATGGGACCTACATGATT+TGG | + | chr4_3:38071641-38071660 | Msa0640180:intron | 35.0% | |
| TCTGTTTACATTAGTCCTTC+TGG | + | chr4_3:38071782-38071801 | Msa0640180:intron | 35.0% | |
| TTTACATTAGTCCTTCTGGA+TGG | + | chr4_3:38071786-38071805 | Msa0640180:intron | 35.0% | |
| TAATTAGGCTCATTAAAGGG+AGG | - | chr4_3:38071936-38071955 | None:intergenic | 35.0% | |
| AAGATTGGATCTGTGTAATC+TGG | - | chr4_3:38072064-38072083 | None:intergenic | 35.0% | |
| GTTGTCATGTTTGGAAAGAT+TGG | - | chr4_3:38072079-38072098 | None:intergenic | 35.0% | |
| !! | AAACAATTTGCTATGACAGG+TGG | + | chr4_3:38072161-38072180 | Msa0640180:CDS | 35.0% |
| ATGGACAATTTCAGTGTCAT+GGG | + | chr4_3:38072189-38072208 | Msa0640180:CDS | 35.0% | |
| TCCGGTAAAAACATATGGTT+GGG | - | chr4_3:38072235-38072254 | None:intergenic | 35.0% | |
| ATCCGGTAAAAACATATGGT+TGG | - | chr4_3:38072236-38072255 | None:intergenic | 35.0% | |
| CAACATCCGGTAAAAACATA+TGG | - | chr4_3:38072240-38072259 | None:intergenic | 35.0% | |
| AACATTCAAGCAGTGGAAAA+AGG | + | chr4_3:38072273-38072292 | Msa0640180:CDS | 35.0% | |
| ACATTCAAGCAGTGGAAAAA+GGG | + | chr4_3:38072274-38072293 | Msa0640180:CDS | 35.0% | |
| ! | GTAGATCTTTTACAAGGATC+AGG | - | chr4_3:38072346-38072365 | None:intergenic | 35.0% |
| GAAACTAGAAGTCATCAAAG+TGG | + | chr4_3:38072468-38072487 | Msa0640180:CDS | 35.0% | |
| CAAGATCTCAGGTTCAAATT+TGG | - | chr4_3:38072724-38072743 | None:intergenic | 35.0% | |
| GTACATTACTGAGAGTGAAA+TGG | - | chr4_3:38072763-38072782 | None:intergenic | 35.0% | |
| TCACTCTCAGTAATGTACAT+CGG | + | chr4_3:38072765-38072784 | Msa0640180:intron | 35.0% | |
| !!! | ACGAATCCGCAAATTTTTTC+AGG | + | chr4_3:38072989-38073008 | Msa0640180:intron | 35.0% |
| !!! | CGAATCCGCAAATTTTTTCA+GGG | + | chr4_3:38072990-38073009 | Msa0640180:intron | 35.0% |
| AAAACACTTGGTCACATCAT+AGG | - | chr4_3:38073194-38073213 | None:intergenic | 35.0% | |
| TTGCTTCAAGCAAGAGTTCA+TGG | + | chr4_3:38070844-38070863 | Msa0640180:CDS | 40.0% | |
| GAGTTCATGGACAAAGAGAA+AGG | + | chr4_3:38070857-38070876 | Msa0640180:CDS | 40.0% | |
| ! | AGGAGTATGTGAAACTATGG+TGG | + | chr4_3:38070877-38070896 | Msa0640180:CDS | 40.0% |
| ACAACCCTTCATTGCATTGT+TGG | - | chr4_3:38070907-38070926 | None:intergenic | 40.0% | |
| AATGAAGGGTTGTGTGTTCT+TGG | + | chr4_3:38070914-38070933 | Msa0640180:CDS | 40.0% | |
| ATAGAGGAGGAAGAGAAGAA+GGG | - | chr4_3:38070965-38070984 | None:intergenic | 40.0% | |
| TTTGCAAGTGTATCGAAACC+GGG | - | chr4_3:38071006-38071025 | None:intergenic | 40.0% | |
| CTTTGCAAGTGTATCGAAAC+CGG | - | chr4_3:38071007-38071026 | None:intergenic | 40.0% | |
| TTTCGATACACTTGCAAAGG+AGG | + | chr4_3:38071008-38071027 | Msa0640180:CDS | 40.0% | |
| TTCGATACACTTGCAAAGGA+GGG | + | chr4_3:38071009-38071028 | Msa0640180:CDS | 40.0% | |
| ! | GATTTTCTTCCCGGAGAATT+TGG | + | chr4_3:38071127-38071146 | Msa0640180:CDS | 40.0% |
| AGAGTCTTCACCAAATTCTC+CGG | - | chr4_3:38071140-38071159 | None:intergenic | 40.0% | |
| CTGAGATTTACGAGCAGAAT+CGG | + | chr4_3:38071204-38071223 | Msa0640180:CDS | 40.0% | |
| !! | CAGAATCGGTTGTTTGGTTT+TGG | + | chr4_3:38071218-38071237 | Msa0640180:CDS | 40.0% |
| !!! | TCGGTTGTTTGGTTTTGGAA+TGG | + | chr4_3:38071223-38071242 | Msa0640180:CDS | 40.0% |
| !!! | TCTTGCTAAGGTTTTGGCTA+AGG | + | chr4_3:38071280-38071299 | Msa0640180:CDS | 40.0% |
| CCATCACTTCCATATAGATG+AGG | - | chr4_3:38071332-38071351 | None:intergenic | 40.0% | |
| CCTCATCTATATGGAAGTGA+TGG | + | chr4_3:38071329-38071348 | Msa0640180:CDS | 40.0% | |
| !! | TGTTTAGCTGAACTTGGTGT+TGG | + | chr4_3:38071365-38071384 | Msa0640180:CDS | 40.0% |
| TTTGTTACCTGATGGAAACC+TGG | - | chr4_3:38071404-38071423 | None:intergenic | 40.0% | |
| TGGGACCCACCAAATTTATA+TGG | + | chr4_3:38071625-38071644 | Msa0640180:intron | 40.0% | |
| GGGACCCACCAAATTTATAT+GGG | + | chr4_3:38071626-38071645 | Msa0640180:intron | 40.0% | |
| TTACTGGATGTGCAGCTAAT+AGG | - | chr4_3:38072018-38072037 | None:intergenic | 40.0% | |
| GCTTGTGTAGTTGTCATGTT+TGG | - | chr4_3:38072088-38072107 | None:intergenic | 40.0% | |
| CATGGACAATTTCAGTGTCA+TGG | + | chr4_3:38072188-38072207 | Msa0640180:CDS | 40.0% | |
| TGGACAATTTCAGTGTCATG+GGG | + | chr4_3:38072190-38072209 | Msa0640180:CDS | 40.0% | |
| CCGGTAAAAACATATGGTTG+GGG | - | chr4_3:38072234-38072253 | None:intergenic | 40.0% | |
| !! | CCCCAACCATATGTTTTTAC+CGG | + | chr4_3:38072231-38072250 | Msa0640180:CDS | 40.0% |
| TATTTCGATAGCGTCTCTTC+TGG | + | chr4_3:38072373-38072392 | Msa0640180:CDS | 40.0% | |
| GCTAGACCTTGATATCAAAC+AGG | + | chr4_3:38072501-38072520 | Msa0640180:CDS | 40.0% | |
| GGATACTTAGCACCAATAAC+AGG | - | chr4_3:38072634-38072653 | None:intergenic | 40.0% | |
| TCTAGCTAACCATCTTCAGT+CGG | + | chr4_3:38072689-38072708 | Msa0640180:intron | 40.0% | |
| TCTCAGGTTCAAATTTGGAG+AGG | - | chr4_3:38072719-38072738 | None:intergenic | 40.0% | |
| ! | TACTGAGAGTGAAATGGACT+CGG | - | chr4_3:38072757-38072776 | None:intergenic | 40.0% |
| !! | GGGCTTGTTGGAATGATATT+TGG | - | chr4_3:38072930-38072949 | None:intergenic | 40.0% |
| !! | TTTCAGGGTTTTTAGGAGGA+TGG | + | chr4_3:38073005-38073024 | Msa0640180:intron | 40.0% |
| ACATCACAACAATGCCTTCT+TGG | - | chr4_3:38073085-38073104 | None:intergenic | 40.0% | |
| CTCTAACAGCAATTTCCAGT+TGG | - | chr4_3:38073129-38073148 | None:intergenic | 40.0% | |
| ! | GAAGGGTCGTCTTCATTTTG+TGG | - | chr4_3:38070948-38070967 | None:intergenic | 45.0% |
| CATAGAGGAGGAAGAGAAGA+AGG | - | chr4_3:38070966-38070985 | None:intergenic | 45.0% | |
| CGGTTTCGATACACTTGCAA+AGG | + | chr4_3:38071005-38071024 | Msa0640180:CDS | 45.0% | |
| GAGTCTTCACCAAATTCTCC+GGG | - | chr4_3:38071139-38071158 | None:intergenic | 45.0% | |
| TACGAGCAGAATCGGTTGTT+TGG | + | chr4_3:38071212-38071231 | Msa0640180:CDS | 45.0% | |
| !!! | GGTTTTGGAATGGCTTTTGG+TGG | + | chr4_3:38071233-38071252 | Msa0640180:CDS | 45.0% |
| GTTGGATTGACACATGAACC+AGG | + | chr4_3:38071383-38071402 | Msa0640180:CDS | 45.0% | |
| ACATGAACCAGGTTTCCATC+AGG | + | chr4_3:38071394-38071413 | Msa0640180:CDS | 45.0% | |
| ! | ATGGGACCTACATGATTTGG+TGG | + | chr4_3:38071644-38071663 | Msa0640180:intron | 45.0% |
| !! | TGGGACCTACATGATTTGGT+GGG | + | chr4_3:38071645-38071664 | Msa0640180:intron | 45.0% |
| TGGATCCCACCAAATCATGT+AGG | - | chr4_3:38071653-38071672 | None:intergenic | 45.0% | |
| ATGTGCAGCTAATAGGCCAA+AGG | - | chr4_3:38072011-38072030 | None:intergenic | 45.0% | |
| AGAGACAGTAAGGGAGTTAC+TGG | - | chr4_3:38072034-38072053 | None:intergenic | 45.0% | |
| GGATGATGCAGAGACAGTAA+GGG | - | chr4_3:38072043-38072062 | None:intergenic | 45.0% | |
| TGGATGATGCAGAGACAGTA+AGG | - | chr4_3:38072044-38072063 | None:intergenic | 45.0% | |
| ! | GCTATGACAGGTGGTTTTCA+TGG | + | chr4_3:38072170-38072189 | Msa0640180:CDS | 45.0% |
| TTACAAGGATCAGGGTGAAG+TGG | - | chr4_3:38072337-38072356 | None:intergenic | 45.0% | |
| AGCGTCTCTTCTGGTAAAGA+CGG | + | chr4_3:38072382-38072401 | Msa0640180:CDS | 45.0% | |
| GTAGTCATCGACAAAGCTGA+GGG | - | chr4_3:38072655-38072674 | None:intergenic | 45.0% | |
| AGTAGTCATCGACAAAGCTG+AGG | - | chr4_3:38072656-38072675 | None:intergenic | 45.0% | |
| CTAGCTAACCATCTTCAGTC+GGG | + | chr4_3:38072690-38072709 | Msa0640180:intron | 45.0% | |
| TGAACCTGAGATCTTGCTGA+AGG | + | chr4_3:38072728-38072747 | Msa0640180:intron | 45.0% | |
| AACTTCGTGTTTGGGCTTGT+TGG | - | chr4_3:38072942-38072961 | None:intergenic | 45.0% | |
| AGTTGGTCACTAGCACTTGA+GGG | - | chr4_3:38073112-38073131 | None:intergenic | 45.0% | |
| !! | GTTTGTTGTTTCTCACGCCG+TGG | + | chr4_3:38070491-38070510 | Msa0640180:five_prime_UTR | 50.0% |
| ! | GTTTCTCACGCCGTGGATTA+CGG | + | chr4_3:38070498-38070517 | Msa0640180:five_prime_UTR | 50.0% |
| !! | AAGTGAGGCACCGTAATCCA+CGG | - | chr4_3:38070511-38070530 | None:intergenic | 50.0% |
| TCTTCGGAGACACATAGAGG+AGG | - | chr4_3:38070978-38070997 | None:intergenic | 50.0% | |
| GTGTCTTCGGAGACACATAG+AGG | - | chr4_3:38070981-38071000 | None:intergenic | 50.0% | |
| !! | TCGAAACCGGGAAGTGTCTT+CGG | - | chr4_3:38070994-38071013 | None:intergenic | 50.0% |
| GAGGGCTTAGATCAGCTATC+CGG | + | chr4_3:38071027-38071046 | Msa0640180:CDS | 50.0% | |
| AGGGCTTAGATCAGCTATCC+GGG | + | chr4_3:38071028-38071047 | Msa0640180:CDS | 50.0% | |
| ! | CGACGACACGATTTTCTTCC+CGG | + | chr4_3:38071118-38071137 | Msa0640180:CDS | 50.0% |
| TCTCGCGCATTCACAACATC+CGG | - | chr4_3:38072253-38072272 | None:intergenic | 50.0% | |
| CGCGAGAAACATTCAAGCAG+TGG | + | chr4_3:38072266-38072285 | Msa0640180:CDS | 50.0% | |
| GATGCCTTCAGCAAGATCTC+AGG | - | chr4_3:38072735-38072754 | None:intergenic | 50.0% | |
| TTCAGTTGCAGGCTCCAAGA+AGG | + | chr4_3:38073068-38073087 | Msa0640180:intron | 50.0% | |
| CAGTTGGTCACTAGCACTTG+AGG | - | chr4_3:38073113-38073132 | None:intergenic | 50.0% | |
| CTCAAGTGCTAGTGACCAAC+TGG | + | chr4_3:38073111-38073130 | Msa0640180:CDS | 50.0% | |
| GTGTCTCCGAAGACACTTCC+CGG | + | chr4_3:38070985-38071004 | Msa0640180:CDS | 55.0% | |
| GCTTAGATCAGCTATCCGGG+TGG | + | chr4_3:38071031-38071050 | Msa0640180:CDS | 55.0% | |
| !!! | GGAATGGCTTTTGGTGGTGC+TGG | + | chr4_3:38071239-38071258 | Msa0640180:CDS | 55.0% |
| AGAGGAGACCCGACTGAAGA+TGG | - | chr4_3:38072701-38072720 | None:intergenic | 55.0% | |
| ATCCGGGTGGCGCGTGTTGT+CGG | + | chr4_3:38071044-38071063 | Msa0640180:CDS | 65.0% | |
| TCCGGGTGGCGCGTGTTGTC+GGG | + | chr4_3:38071045-38071064 | Msa0640180:CDS | 70.0% | |
| CCCCGACAACACGCGCCACC+CGG | - | chr4_3:38071049-38071068 | None:intergenic | 75.0% | |
| CCGGGTGGCGCGTGTTGTCG+GGG | + | chr4_3:38071046-38071065 | Msa0640180:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 38070397 | 38073356 | 38070397 | ID=Msa0640180;Name=Msa0640180 |
| chr4_3 | mRNA | 38070397 | 38073356 | 38070397 | ID=Msa0640180-mRNA-1;Parent=Msa0640180;Name=Msa0640180-mRNA-1;_AED=0.30;_eAED=0.30;_QI=233|0.5|0.66|1|0.5|0.33|3|173|482 |
| chr4_3 | exon | 38070397 | 38071415 | 38070397 | ID=Msa0640180-mRNA-1:exon:8642;Parent=Msa0640180-mRNA-1 |
| chr4_3 | exon | 38071989 | 38072540 | 38071989 | ID=Msa0640180-mRNA-1:exon:8643;Parent=Msa0640180-mRNA-1 |
| chr4_3 | exon | 38073073 | 38073356 | 38073073 | ID=Msa0640180-mRNA-1:exon:8644;Parent=Msa0640180-mRNA-1 |
| chr4_3 | five_prime_UTR | 38070397 | 38070629 | 38070397 | ID=Msa0640180-mRNA-1:five_prime_utr;Parent=Msa0640180-mRNA-1 |
| chr4_3 | CDS | 38070630 | 38071415 | 38070630 | ID=Msa0640180-mRNA-1:cds;Parent=Msa0640180-mRNA-1 |
| chr4_3 | CDS | 38071989 | 38072540 | 38071989 | ID=Msa0640180-mRNA-1:cds;Parent=Msa0640180-mRNA-1 |
| chr4_3 | CDS | 38073073 | 38073183 | 38073073 | ID=Msa0640180-mRNA-1:cds;Parent=Msa0640180-mRNA-1 |
| chr4_3 | three_prime_UTR | 38073184 | 38073356 | 38073184 | ID=Msa0640180-mRNA-1:three_prime_utr;Parent=Msa0640180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
