Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584450 | XP_013455606.1 | 96.266 | 482 | 12 | 1 | 1 | 482 | 1 | 476 | 0.0 | 967 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036140 | Msa0584450 | 0.805408 | 1.354502e-49 | -8.615850e-47 |
| Msa0043980 | Msa0584450 | 0.800418 | 1.455118e-48 | -8.615850e-47 |
| Msa0053860 | Msa0584450 | 0.829548 | 4.841131e-55 | -8.615850e-47 |
| Msa0079070 | Msa0584450 | 0.806669 | 7.353360e-50 | -8.615850e-47 |
| Msa0089750 | Msa0584450 | 0.809659 | 1.696431e-50 | -8.615850e-47 |
| Msa0104800 | Msa0584450 | 0.800545 | 1.370898e-48 | -8.615850e-47 |
| Msa0127800 | Msa0584450 | 0.801732 | 7.835220e-49 | -8.615850e-47 |
| Msa0131770 | Msa0584450 | 0.802359 | 5.823984e-49 | -8.615850e-47 |
| Msa0150860 | Msa0584450 | 0.803931 | 2.754722e-49 | -8.615850e-47 |
| Msa0206010 | Msa0584450 | 0.804809 | 1.807262e-49 | -8.615850e-47 |
| Msa0211150 | Msa0584450 | 0.801056 | 1.077850e-48 | -8.615850e-47 |
| Msa0376910 | Msa0584450 | 0.804706 | 1.899283e-49 | -8.615850e-47 |
| Msa0464100 | Msa0584450 | 0.811219 | 7.810412e-51 | -8.615850e-47 |
| Msa0464120 | Msa0584450 | 0.810454 | 1.143357e-50 | -8.615850e-47 |
| Msa0471900 | Msa0584450 | 0.807938 | 3.958288e-50 | -8.615850e-47 |
| Msa0481530 | Msa0584450 | 0.819416 | 1.174799e-52 | -8.615850e-47 |
| Msa0259500 | Msa0584450 | 0.813665 | 2.281772e-51 | -8.615850e-47 |
| Msa0267370 | Msa0584450 | 0.806561 | 7.749933e-50 | -8.615850e-47 |
| Msa0326110 | Msa0584450 | 0.805548 | 1.265942e-49 | -8.615850e-47 |
| Msa0326520 | Msa0584450 | 0.800379 | 1.481820e-48 | -8.615850e-47 |
| Msa0330340 | Msa0584450 | 0.800912 | 1.153652e-48 | -8.615850e-47 |
| Msa0341540 | Msa0584450 | 0.811655 | 6.282064e-51 | -8.615850e-47 |
| Msa0363790 | Msa0584450 | 0.821235 | 4.497952e-53 | -8.615850e-47 |
| Msa0529890 | Msa0584450 | 0.813857 | 2.069462e-51 | -8.615850e-47 |
| Msa0543650 | Msa0584450 | 0.831321 | 1.783598e-55 | -8.615850e-47 |
| Msa0559500 | Msa0584450 | 0.802306 | 5.971456e-49 | -8.615850e-47 |
| Msa0574390 | Msa0584450 | 0.803255 | 3.803205e-49 | -8.615850e-47 |
| Msa0584450 | Msa0585560 | 0.816380 | 5.697630e-52 | -8.615850e-47 |
| Msa0584450 | Msa0625720 | 0.815670 | 8.206826e-52 | -8.615850e-47 |
| Msa0584450 | Msa0640180 | 0.813630 | 2.322128e-51 | -8.615850e-47 |
| Msa0584450 | Msa0661650 | 0.801396 | 9.183451e-49 | -8.615850e-47 |
| Msa0584450 | Msa0663390 | 0.817573 | 3.075146e-52 | -8.615850e-47 |
| Msa0584450 | Msa0680660 | 0.810375 | 1.189266e-50 | -8.615850e-47 |
| Msa0584450 | Msa0681250 | 0.801299 | 9.612461e-49 | -8.615850e-47 |
| Msa0584450 | Msa0685920 | 0.810226 | 1.280990e-50 | -8.615850e-47 |
| Msa0584450 | Msa0707250 | 0.807887 | 4.059057e-50 | -8.615850e-47 |
| Msa0584450 | Msa0721280 | 0.814614 | 1.408333e-51 | -8.615850e-47 |
| Msa0584450 | Msa0740510 | 0.810928 | 9.032289e-51 | -8.615850e-47 |
| Msa0584450 | Msa0760130 | 0.809226 | 2.100893e-50 | -8.615850e-47 |
| Msa0584450 | Msa0763890 | 0.811233 | 7.755725e-51 | -8.615850e-47 |
| Msa0584450 | Msa0763920 | 0.803622 | 3.192151e-49 | -8.615850e-47 |
| Msa0584450 | Msa0817460 | 0.829635 | 4.610322e-55 | -8.615850e-47 |
| Msa0584450 | Msa0820770 | 0.804208 | 2.411572e-49 | -8.615850e-47 |
| Msa0584450 | Msa0832340 | 0.826092 | 3.278487e-54 | -8.615850e-47 |
| Msa0584450 | Msa0861090 | 0.803738 | 3.019974e-49 | -8.615850e-47 |
| Msa0584450 | Msa0894710 | 0.813046 | 3.119956e-51 | -8.615850e-47 |
| Msa0584450 | Msa0927310 | 0.802371 | 5.791169e-49 | -8.615850e-47 |
| Msa0584450 | Msa0933760 | 0.806801 | 6.896200e-50 | -8.615850e-47 |
| Msa0584450 | Msa0934140 | 0.803215 | 3.876989e-49 | -8.615850e-47 |
| Msa0584450 | Msa0969520 | 0.802497 | 5.456221e-49 | -8.615850e-47 |
| Msa0584450 | Msa0986510 | 0.805581 | 1.245805e-49 | -8.615850e-47 |
| Msa0584450 | Msa1002850 | 0.805448 | 1.328444e-49 | -8.615850e-47 |
| Msa0584450 | Msa1034500 | 0.801393 | 9.198511e-49 | -8.615850e-47 |
| Msa0584450 | Msa1036610 | 0.815968 | 7.043486e-52 | -8.615850e-47 |
| Msa0584450 | Msa1037780 | 0.800669 | 1.293001e-48 | -8.615850e-47 |
| Msa0584450 | Msa1082500 | 0.810981 | 8.793895e-51 | -8.615850e-47 |
| Msa0584450 | Msa1083840 | 0.831232 | 1.875988e-55 | -8.615850e-47 |
| Msa0584450 | Msa1137570 | 0.808763 | 2.639910e-50 | -8.615850e-47 |
| Msa0584450 | Msa1147740 | 0.812527 | 4.054363e-51 | -8.615850e-47 |
| Msa0584450 | Msa1162780 | 0.817458 | 3.263296e-52 | -8.615850e-47 |
| Msa0584450 | Msa1225130 | 0.812613 | 3.881917e-51 | -8.615850e-47 |
| Msa0584450 | Msa1232740 | 0.810279 | 1.247536e-50 | -8.615850e-47 |
| Msa0584450 | Msa1250530 | 0.815448 | 9.198570e-52 | -8.615850e-47 |
| Msa0584450 | Msa1286800 | 0.833223 | 6.033288e-56 | -8.615850e-47 |
| Msa0584450 | Msa1308870 | 0.800166 | 1.637492e-48 | -8.615850e-47 |
| Msa0584450 | Msa1313320 | 0.805281 | 1.439909e-49 | -8.615850e-47 |
| Msa0584450 | Msa1331000 | 0.804267 | 2.344841e-49 | -8.615850e-47 |
| Msa0584450 | Msa1348880 | 0.804612 | 1.986709e-49 | -8.615850e-47 |
| Msa0584450 | Msa1353470 | 0.833126 | 6.378174e-56 | -8.615850e-47 |
| Msa0584450 | Msa1357890 | 0.812852 | 3.441921e-51 | -8.615850e-47 |
| Msa0584450 | Msa1373030 | 0.800556 | 1.363768e-48 | -8.615850e-47 |
| Msa0584450 | Msa1382400 | 0.806672 | 7.340026e-50 | -8.615850e-47 |
| Msa0584450 | Msa1397120 | 0.815825 | 7.580669e-52 | -8.615850e-47 |
| Msa0584450 | Msa1398090 | 0.814759 | 1.307890e-51 | -8.615850e-47 |
| Msa0584450 | Msa1403890 | 0.808295 | 3.322268e-50 | -8.615850e-47 |
| Msa0584450 | Msa1435270 | 0.825409 | 4.762057e-54 | -8.615850e-47 |
| Msa0584450 | Msa1463900 | 0.819329 | 1.230071e-52 | -8.615850e-47 |
| Msa0584450 | Msa1466540 | 0.806499 | 7.985579e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584450 | MtrunA17_Chr4g0023991 | 96.266 | 482 | 12 | 1 | 1 | 482 | 1 | 476 | 0.0 | 967 |
| Msa0584450 | MtrunA17_Chr2g0322991 | 63.299 | 485 | 150 | 7 | 9 | 482 | 6 | 473 | 0.0 | 579 |
| Msa0584450 | MtrunA17_Chr4g0024001 | 51.261 | 476 | 206 | 8 | 4 | 479 | 26 | 475 | 2.06e-161 | 465 |
| Msa0584450 | MtrunA17_Chr8g0348511 | 43.789 | 475 | 245 | 10 | 16 | 479 | 24 | 487 | 1.39e-128 | 382 |
| Msa0584450 | MtrunA17_Chr8g0387371 | 44.471 | 425 | 212 | 8 | 63 | 478 | 105 | 514 | 6.37e-125 | 374 |
| Msa0584450 | MtrunA17_Chr2g0327551 | 44.419 | 430 | 212 | 8 | 59 | 478 | 41 | 453 | 1.35e-122 | 365 |
| Msa0584450 | MtrunA17_Chr7g0239421 | 42.529 | 435 | 213 | 9 | 63 | 479 | 92 | 507 | 1.12e-119 | 360 |
| Msa0584450 | MtrunA17_Chr3g0112211 | 41.315 | 426 | 235 | 5 | 56 | 479 | 75 | 487 | 3.91e-119 | 358 |
| Msa0584450 | MtrunA17_Chr4g0030331 | 45.153 | 392 | 208 | 5 | 59 | 446 | 103 | 491 | 2.81e-118 | 356 |
| Msa0584450 | MtrunA17_Chr5g0395861 | 37.002 | 427 | 249 | 6 | 59 | 477 | 121 | 535 | 1.93e-92 | 291 |
| Msa0584450 | MtrunA17_Chr5g0397301 | 50.455 | 220 | 96 | 4 | 54 | 263 | 64 | 280 | 7.71e-69 | 222 |
| Msa0584450 | MtrunA17_Chr7g0248241 | 54.229 | 201 | 90 | 2 | 63 | 262 | 91 | 290 | 2.23e-68 | 221 |
| Msa0584450 | MtrunA17_Chr5g0397311 | 40.455 | 220 | 116 | 7 | 264 | 478 | 22 | 231 | 7.02e-43 | 151 |
| Msa0584450 | MtrunA17_Chr7g0248231 | 39.645 | 169 | 98 | 3 | 264 | 429 | 4 | 171 | 6.63e-36 | 132 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0584450 | AT1G05280.1 | 54.167 | 480 | 197 | 9 | 13 | 482 | 24 | 490 | 0.0 | 520 |
| Msa0584450 | AT1G05280.2 | 54.691 | 437 | 183 | 7 | 13 | 441 | 24 | 453 | 8.05e-167 | 479 |
| Msa0584450 | AT4G15240.1 | 45.572 | 463 | 240 | 6 | 18 | 479 | 33 | 484 | 6.34e-144 | 421 |
| Msa0584450 | AT1G01570.1 | 44.493 | 454 | 233 | 8 | 37 | 478 | 26 | 472 | 1.49e-128 | 382 |
| Msa0584450 | AT4G23490.1 | 46.620 | 429 | 201 | 9 | 63 | 478 | 109 | 522 | 7.25e-128 | 382 |
| Msa0584450 | AT1G01570.2 | 44.493 | 454 | 233 | 8 | 37 | 478 | 57 | 503 | 7.67e-128 | 381 |
| Msa0584450 | AT5G41460.1 | 45.283 | 424 | 215 | 8 | 62 | 479 | 109 | 521 | 2.18e-124 | 373 |
| Msa0584450 | AT4G11350.1 | 44.875 | 439 | 211 | 10 | 56 | 478 | 80 | 503 | 1.40e-122 | 368 |
| Msa0584450 | AT2G37730.1 | 39.400 | 467 | 266 | 5 | 12 | 471 | 45 | 501 | 3.17e-115 | 350 |
| Msa0584450 | AT1G07850.1 | 44.811 | 424 | 214 | 8 | 62 | 478 | 122 | 532 | 1.86e-112 | 343 |
| Msa0584450 | AT3G11420.1 | 39.394 | 429 | 234 | 9 | 63 | 479 | 91 | 505 | 4.69e-109 | 333 |
| Msa0584450 | AT4G00295.1 | 48.974 | 341 | 164 | 5 | 60 | 392 | 75 | 413 | 2.25e-108 | 330 |
| Msa0584450 | AT1G33250.1 | 39.048 | 420 | 245 | 6 | 58 | 473 | 124 | 536 | 9.58e-104 | 320 |
| Msa0584450 | AT5G12460.1 | 34.722 | 432 | 248 | 8 | 59 | 479 | 32 | 440 | 3.92e-86 | 271 |
| Msa0584450 | AT4G11350.2 | 49.776 | 223 | 104 | 3 | 56 | 271 | 80 | 301 | 1.08e-67 | 220 |
Find 96 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGATAGTGTAAAAGTATT+AGG | 0.139151 | 4_2:-3908865 | Msa0584450:three_prime_UTR |
| GAAAATGAATATTGTGAATA+TGG | 0.201776 | 4_2:+3911611 | None:intergenic |
| AGTTGATGAGATTGTAAATT+AGG | 0.208385 | 4_2:-3908938 | Msa0584450:three_prime_UTR |
| CAGAATCGGTTGTTTGGTTT+TGG | 0.208966 | 4_2:-3910970 | Msa0584450:CDS |
| ACACTATCAGAGAAACAAAA+AGG | 0.228221 | 4_2:+3908877 | None:intergenic |
| AACATTCAAGCAGTGGAAAA+AGG | 0.233460 | 4_2:-3909915 | Msa0584450:CDS |
| TAATTCCATGTGTAAAATTA+AGG | 0.235194 | 4_2:+3911749 | None:intergenic |
| TTCATCTCTTGCTAAGGTTT+TGG | 0.236987 | 4_2:-3910914 | Msa0584450:CDS |
| ACCCTTGATACATTATATAT+TGG | 0.239113 | 4_2:+3908970 | None:intergenic |
| TCAAAATTGCTCAAAGGATT+TGG | 0.247836 | 4_2:-3909753 | Msa0584450:CDS |
| CTCTGAGAATCAACATTTAC+TGG | 0.248792 | 4_2:+3910061 | None:intergenic |
| TTGATGACTTCTAGTTTCTT+TGG | 0.255302 | 4_2:+3909725 | None:intergenic |
| ATGAAACAGGTTGATTTAAC+TGG | 0.275394 | 4_2:-3910208 | Msa0584450:intron |
| ACATCACAACAATGCCTTCT+TGG | 0.300949 | 4_2:+3909107 | None:intergenic |
| GTATTATAAACAGTTATTAT+AGG | 0.313324 | 4_2:-3909784 | Msa0584450:CDS |
| GAAAGGTATCCTCATCTATA+TGG | 0.333313 | 4_2:-3910868 | Msa0584450:CDS |
| GCCAACCGTGAAAATCTAAT+TGG | 0.336073 | 4_2:-3911836 | Msa0584450:five_prime_UTR |
| TTACTGGATGCGCAGCTAAT+AGG | 0.342798 | 4_2:+3910173 | None:intergenic |
| GTTTCTCACGCCGTGGATTA+CGG | 0.343663 | 4_2:-3911689 | Msa0584450:five_prime_UTR |
| ACTCTAGATGATATTGTGTT+TGG | 0.352904 | 4_2:-3911369 | Msa0584450:CDS |
| CTTGTATCAGTACTAATATT+AGG | 0.360904 | 4_2:-3911474 | Msa0584450:CDS |
| CATGAGCTTTGGTATTATAT+AGG | 0.361732 | 4_2:-3911015 | Msa0584450:CDS |
| GTAGTCATGTTTGGAAAGAT+TGG | 0.362157 | 4_2:+3910112 | None:intergenic |
| GATTTAACTGGAAATACCTT+TGG | 0.367215 | 4_2:-3910196 | Msa0584450:CDS |
| CTGATAGTGTAAAAGTATTA+GGG | 0.371530 | 4_2:-3908864 | Msa0584450:three_prime_UTR |
| AGAGACAGTAAGGGAGTTAC+TGG | 0.382398 | 4_2:+3910157 | None:intergenic |
| CAAAATATGATCATGAGCTT+TGG | 0.385050 | 4_2:-3911026 | Msa0584450:CDS |
| TTGCTTCAAGCAAGAGTTCA+TGG | 0.388430 | 4_2:-3911344 | Msa0584450:CDS |
| TATTTCGATAGCGTCTCTTC+TGG | 0.390501 | 4_2:-3909815 | Msa0584450:CDS |
| AATAAAGGGTTGTGTGTTCT+TGG | 0.395620 | 4_2:-3911274 | Msa0584450:CDS |
| TAGTTACCTGTTTGATATCA+AGG | 0.395977 | 4_2:+3909681 | None:intergenic |
| AAAACACTTGGTCACATCAT+AGG | 0.404875 | 4_2:+3908998 | None:intergenic |
| TACGAGCAGAATCGGTTGTT+TGG | 0.409803 | 4_2:-3910976 | Msa0584450:CDS |
| TCGAAACCGCGAAGTGTCTT+CGG | 0.413526 | 4_2:+3911197 | None:intergenic |
| GAAAGGAGTATGTGAAACTA+TGG | 0.414791 | 4_2:-3911314 | Msa0584450:CDS |
| CTTCACATTTGAATGATTCA+AGG | 0.414862 | 4_2:+3911110 | None:intergenic |
| CTCAAGTGCTAGTGACCAAC+TGG | 0.419998 | 4_2:-3909078 | Msa0584450:CDS |
| ATCCAATATATAATGTATCA+AGG | 0.420906 | 4_2:-3908972 | Msa0584450:three_prime_UTR |
| CATGGACAATTTCAGTGTCA+TGG | 0.422607 | 4_2:-3910000 | Msa0584450:CDS |
| GCTTGTGTAGTAGTCATGTT+TGG | 0.424081 | 4_2:+3910103 | None:intergenic |
| AAGATTGGATCTGTGTAATC+TGG | 0.442009 | 4_2:+3910127 | None:intergenic |
| CTGAGATTTACGAGCAGAAT+CGG | 0.447733 | 4_2:-3910984 | Msa0584450:CDS |
| TATTCATGTTTAGCTGAACT+TGG | 0.453154 | 4_2:-3910829 | Msa0584450:CDS |
| GAGGACTTCGATCAGCTATC+CGG | 0.453226 | 4_2:-3911161 | Msa0584450:CDS |
| ATGGACAATTTCAGTGTCAT+GGG | 0.456001 | 4_2:-3909999 | Msa0584450:CDS |
| CATAATGGAGGAAGAGAAGA+AGG | 0.459235 | 4_2:+3911225 | None:intergenic |
| AATGTGAAGTGGTATGTGTT+TGG | 0.460214 | 4_2:-3911096 | Msa0584450:CDS |
| TGTTTAGCTGAACTTGGTGT+TGG | 0.467552 | 4_2:-3910823 | Msa0584450:CDS |
| AGAGTCTTCACCAAATTCTC+CGG | 0.470157 | 4_2:+3911051 | None:intergenic |
| GTGTCTTCGGAGACACATAA+TGG | 0.474810 | 4_2:+3911210 | None:intergenic |
| TGGATGATGCAGAGACAGTA+AGG | 0.476779 | 4_2:+3910147 | None:intergenic |
| GCTAGACCTTGATATCAAAC+AGG | 0.484491 | 4_2:-3909687 | Msa0584450:CDS |
| TTAGTTACATCTTCAGTTTG+TGG | 0.488441 | 4_2:-3911507 | Msa0584450:CDS |
| TATTAGTTCATCTCTTGCTA+AGG | 0.494347 | 4_2:-3910920 | Msa0584450:CDS |
| TTTGTTACCTGATGGAAACC+TGG | 0.503363 | 4_2:+3910787 | None:intergenic |
| CAGTTGGTCACTAGCACTTG+AGG | 0.504072 | 4_2:+3909079 | None:intergenic |
| CGGTTTCGATATACTTGCAA+AGG | 0.512929 | 4_2:-3911183 | Msa0584450:CDS |
| AGCGTCTCTTCTGGTAAAGA+TGG | 0.520299 | 4_2:-3909806 | Msa0584450:CDS |
| CCGCGACAACACGCGCCACC+CGG | 0.523774 | 4_2:+3911142 | None:intergenic |
| CTCTAACAGCAATTTCCAGT+TGG | 0.524734 | 4_2:+3909063 | None:intergenic |
| CCGGGTGGCGCGTGTTGTCG+CGG | 0.525441 | 4_2:-3911142 | Msa0584450:CDS |
| AGGACTTCGATCAGCTATCC+GGG | 0.525783 | 4_2:-3911160 | Msa0584450:CDS |
| AAACAATTTGCTATGACAGA+TGG | 0.528616 | 4_2:-3910027 | Msa0584450:CDS |
| TCTCGCGCATTCACAACATC+CGG | 0.534501 | 4_2:+3909938 | None:intergenic |
| GAGTTCATGGACAAAGAGAA+AGG | 0.541475 | 4_2:-3911331 | Msa0584450:CDS |
| TTACTCAAAACGTCAAAGCT+AGG | 0.548214 | 4_2:-3911722 | Msa0584450:five_prime_UTR |
| AGTTGGTCACTAGCACTTGA+GGG | 0.550589 | 4_2:+3909080 | None:intergenic |
| GTGTCTCCGAAGACACTTCG+CGG | 0.550612 | 4_2:-3911203 | Msa0584450:CDS |
| GAGTCTTCACCAAATTCTCC+GGG | 0.555356 | 4_2:+3911052 | None:intergenic |
| CGCGAGAAACATTCAAGCAG+TGG | 0.559585 | 4_2:-3909922 | Msa0584450:CDS |
| TTCAGTTGCAGGCTCCAAGA+AGG | 0.560994 | 4_2:-3909121 | Msa0584450:intron |
| CCTCATCTATATGGAAGTGA+TGG | 0.561800 | 4_2:-3910859 | Msa0584450:CDS |
| TCTATATGGAAGTGATGGTA+GGG | 0.563146 | 4_2:-3910854 | Msa0584450:CDS |
| ACATGAACCAGGTTTCCATC+AGG | 0.563922 | 4_2:-3910794 | Msa0584450:intron |
| GTGTAAAATTAAGGTAAGGT+AGG | 0.564391 | 4_2:+3911758 | None:intergenic |
| AGGAGTATGTGAAACTATGG+TGG | 0.566032 | 4_2:-3911311 | Msa0584450:CDS |
| TCCAATATATAATGTATCAA+GGG | 0.567438 | 4_2:-3908971 | Msa0584450:three_prime_UTR |
| TTACAAGGATCAGGGTGAAG+TGG | 0.568617 | 4_2:+3909854 | None:intergenic |
| TGAATCATTCAAATGTGAAG+TGG | 0.573727 | 4_2:-3911107 | Msa0584450:CDS |
| ATCTATATGGAAGTGATGGT+AGG | 0.582221 | 4_2:-3910855 | Msa0584450:CDS |
| CCATGTGTAAAATTAAGGTA+AGG | 0.591034 | 4_2:+3911754 | None:intergenic |
| TTTCGATATACTTGCAAAGG+AGG | 0.592023 | 4_2:-3911180 | Msa0584450:CDS |
| GTTTGTTGTTTCTCACGCCG+TGG | 0.598986 | 4_2:-3911696 | Msa0584450:five_prime_UTR |
| GAAACTAGAAGTCATCAAAG+TGG | 0.613370 | 4_2:-3909720 | Msa0584450:CDS |
| GTTGGATTGACACATGAACC+AGG | 0.627174 | 4_2:-3910805 | Msa0584450:CDS |
| TGGACAATTTCAGTGTCATG+GGG | 0.639158 | 4_2:-3909998 | Msa0584450:CDS |
| CCATCACTTCCATATAGATG+AGG | 0.641487 | 4_2:+3910859 | None:intergenic |
| AAGTGAACCACCGTAATCCA+CGG | 0.643832 | 4_2:+3911679 | None:intergenic |
| GGATGATGCAGAGACAGTAA+GGG | 0.659335 | 4_2:+3910148 | None:intergenic |
| CAGTAAATGTTGATTCTCAG+AGG | 0.666403 | 4_2:-3910060 | Msa0584450:CDS |
| GCGTGTTGTCGCGGAGACTG+TGG | 0.676360 | 4_2:-3911133 | Msa0584450:CDS |
| ATGCGCAGCTAATAGGCCAA+AGG | 0.676747 | 4_2:+3910180 | None:intergenic |
| TCTCACGCCGTGGATTACGG+TGG | 0.681097 | 4_2:-3911686 | Msa0584450:five_prime_UTR |
| TCTTCGGAGACACATAATGG+AGG | 0.718111 | 4_2:+3911213 | None:intergenic |
| ATAATGGAGGAAGAGAAGAA+GGG | 0.725065 | 4_2:+3911226 | None:intergenic |
| ACTTCGATCAGCTATCCGGG+TGG | 0.756746 | 4_2:-3911157 | Msa0584450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTGAGTAATTTATTTT+TGG | - | chr4_2:3909983-3910002 | Msa0584450:CDS | 10.0% |
| !! | GTATTATAAACAGTTATTAT+AGG | - | chr4_2:3910926-3910945 | Msa0584450:CDS | 15.0% |
| !!! | TTTTTGAAATGCATTTTTTT+TGG | - | chr4_2:3911126-3911145 | Msa0584450:CDS | 15.0% |
| !! | TAATTCCATGTGTAAAATTA+AGG | + | chr4_2:3908964-3908983 | None:intergenic | 20.0% |
| !! | GAAAATGAATATTGTGAATA+TGG | + | chr4_2:3909102-3909121 | None:intergenic | 20.0% |
| !! | AAAAACAACAATGCAATAAA+GGG | - | chr4_2:3909422-3909441 | Msa0584450:intron | 20.0% |
| !!! | TTTGAGTAATTTATTTTTGG+TGG | - | chr4_2:3909986-3910005 | Msa0584450:CDS | 20.0% |
| !!! | ACAGATCATTTTAGATTTTA+TGG | - | chr4_2:3910393-3910412 | Msa0584450:intron | 20.0% |
| !! | ACAAAAACTATGCATTAATT+AGG | + | chr4_2:3910473-3910492 | None:intergenic | 20.0% |
| !!! | TAATTAATGCATAGTTTTTG+TGG | - | chr4_2:3910472-3910491 | Msa0584450:intron | 20.0% |
| !! | CAAGATATACCATAATTAAA+CGG | + | chr4_2:3911064-3911083 | None:intergenic | 20.0% |
| !! | TTTGCTGATAAAATAAGATA+AGG | - | chr4_2:3911092-3911111 | Msa0584450:CDS | 20.0% |
| !! | AAATGCATTTCAAAAACTTT+CGG | + | chr4_2:3911122-3911141 | None:intergenic | 20.0% |
| !!! | AACATTGTTTTTCTTGTTTA+TGG | - | chr4_2:3911367-3911386 | Msa0584450:CDS | 20.0% |
| !! | ATATTGGATTAAAAAACACT+TGG | + | chr4_2:3911727-3911746 | None:intergenic | 20.0% |
| !! | ATCCAATATATAATGTATCA+AGG | - | chr4_2:3911738-3911757 | Msa0584450:five_prime_UTR | 20.0% |
| !! | TCCAATATATAATGTATCAA+GGG | - | chr4_2:3911739-3911758 | Msa0584450:five_prime_UTR | 20.0% |
| ! | CTTGTATCAGTACTAATATT+AGG | - | chr4_2:3909236-3909255 | Msa0584450:intron | 25.0% |
| !!! | AGTTGTGTTTGTTTTTTTGA+TGG | + | chr4_2:3909324-3909343 | None:intergenic | 25.0% |
| ! | GAAAAACAACAATGCAATAA+AGG | - | chr4_2:3909421-3909440 | Msa0584450:intron | 25.0% |
| !!! | TAAGGTTTTTGATTCTTGTT+TGG | - | chr4_2:3909820-3909839 | Msa0584450:CDS | 25.0% |
| !!! | TTTTTGATTCTTGTTTGGAA+AGG | - | chr4_2:3909825-3909844 | Msa0584450:CDS | 25.0% |
| !! | ATTAACTATTTGTTACCTGA+TGG | + | chr4_2:3909934-3909953 | None:intergenic | 25.0% |
| !!! | GTAATTTATTTTTGGTGGAA+TGG | - | chr4_2:3909991-3910010 | Msa0584450:CDS | 25.0% |
| ! | TTTCTCTTTCGTTAATTTCA+GGG | + | chr4_2:3910062-3910081 | None:intergenic | 25.0% |
| ! | ATTTCTCTTTCGTTAATTTC+AGG | + | chr4_2:3910063-3910082 | None:intergenic | 25.0% |
| !! | TTGATTGGTTAAAATTCATG+TGG | - | chr4_2:3910127-3910146 | Msa0584450:CDS | 25.0% |
| !! | TGATTGGTTAAAATTCATGT+GGG | - | chr4_2:3910128-3910147 | Msa0584450:CDS | 25.0% |
| !! | TTGATTGGTTAAAATTCACA+TGG | + | chr4_2:3910195-3910214 | None:intergenic | 25.0% |
| !! | TCTAACACAATCTTTTTGAT+TGG | + | chr4_2:3910210-3910229 | None:intergenic | 25.0% |
| !! | ATTTTATGGACCAAATAACT+CGG | - | chr4_2:3910407-3910426 | Msa0584450:intron | 25.0% |
| !! | AAGATAGTAGATCTTTTACA+AGG | + | chr4_2:3910874-3910893 | None:intergenic | 25.0% |
| !! | ATCTTTTCAAAATTGCTCAA+AGG | - | chr4_2:3910951-3910970 | Msa0584450:CDS | 25.0% |
| ! | TTTGTGAATCCGTTTAATTA+TGG | - | chr4_2:3911052-3911071 | Msa0584450:CDS | 25.0% |
| !!! | TTTTTTGGTAAACCTGTTAT+TGG | - | chr4_2:3911141-3911160 | Msa0584450:CDS | 25.0% |
| ! | AAAAACCCTGAAAAAATTTG+TGG | + | chr4_2:3911519-3911538 | None:intergenic | 25.0% |
| !!! | CAAATTTTTTCAGGGTTTTT+AGG | - | chr4_2:3911519-3911538 | Msa0584450:CDS | 25.0% |
| !!! | TTTTATTTGATTTCAGTTGC+AGG | - | chr4_2:3911578-3911597 | Msa0584450:exon | 25.0% |
| ! | ACCCTTGATACATTATATAT+TGG | + | chr4_2:3911743-3911762 | None:intergenic | 25.0% |
| !!! | AGTTGATGAGATTGTAAATT+AGG | - | chr4_2:3911772-3911791 | Msa0584450:five_prime_UTR | 25.0% |
| !!! | TCTGATAGTGTAAAAGTATT+AGG | - | chr4_2:3911845-3911864 | Msa0584450:five_prime_UTR | 25.0% |
| !!! | CTGATAGTGTAAAAGTATTA+GGG | - | chr4_2:3911846-3911865 | Msa0584450:five_prime_UTR | 25.0% |
| ! | CTCTACCAATTAGATTTTCA+CGG | + | chr4_2:3908882-3908901 | None:intergenic | 30.0% |
| GTGTAAAATTAAGGTAAGGT+AGG | + | chr4_2:3908955-3908974 | None:intergenic | 30.0% | |
| CCATGTGTAAAATTAAGGTA+AGG | + | chr4_2:3908959-3908978 | None:intergenic | 30.0% | |
| ! | CCTTACCTTAATTTTACACA+TGG | - | chr4_2:3908956-3908975 | Msa0584450:three_prime_UTR | 30.0% |
| TTAGTTACATCTTCAGTTTG+TGG | - | chr4_2:3909203-3909222 | Msa0584450:intron | 30.0% | |
| ACTCTAGATGATATTGTGTT+TGG | - | chr4_2:3909341-3909360 | Msa0584450:intron | 30.0% | |
| CTTCACATTTGAATGATTCA+AGG | + | chr4_2:3909603-3909622 | None:intergenic | 30.0% | |
| TGAATCATTCAAATGTGAAG+TGG | - | chr4_2:3909603-3909622 | Msa0584450:intron | 30.0% | |
| CAAAATATGATCATGAGCTT+TGG | - | chr4_2:3909684-3909703 | Msa0584450:CDS | 30.0% | |
| ! | CATGAGCTTTGGTATTATAT+AGG | - | chr4_2:3909695-3909714 | Msa0584450:CDS | 30.0% |
| TATTAGTTCATCTCTTGCTA+AGG | - | chr4_2:3909790-3909809 | Msa0584450:CDS | 30.0% | |
| TATTCATGTTTAGCTGAACT+TGG | - | chr4_2:3909881-3909900 | Msa0584450:CDS | 30.0% | |
| ATGTAGGTCCCATATAAATT+TGG | + | chr4_2:3910159-3910178 | None:intergenic | 30.0% | |
| ATATGAGAATTTCGTTAACG+AGG | + | chr4_2:3910265-3910284 | None:intergenic | 30.0% | |
| AACAAAAATAACCATCCAGA+AGG | + | chr4_2:3910322-3910341 | None:intergenic | 30.0% | |
| !! | ATTCTAGAATCCGAGTTATT+TGG | + | chr4_2:3910420-3910439 | None:intergenic | 30.0% |
| CATTAATTAGGCTCGTTAAA+GGG | + | chr4_2:3910461-3910480 | None:intergenic | 30.0% | |
| TTGTGGTTATGAAATGAAAC+AGG | - | chr4_2:3910489-3910508 | Msa0584450:intron | 30.0% | |
| !! | ATGAAACAGGTTGATTTAAC+TGG | - | chr4_2:3910502-3910521 | Msa0584450:intron | 30.0% |
| GATTTAACTGGAAATACCTT+TGG | - | chr4_2:3910514-3910533 | Msa0584450:intron | 30.0% | |
| !! | AAACAATTTGCTATGACAGA+TGG | - | chr4_2:3910683-3910702 | Msa0584450:intron | 30.0% |
| ! | TAGATCTTTTACAAGGATCA+GGG | + | chr4_2:3910867-3910886 | None:intergenic | 30.0% |
| TCAAAATTGCTCAAAGGATT+TGG | - | chr4_2:3910957-3910976 | Msa0584450:CDS | 30.0% | |
| !! | TTGATGACTTCTAGTTTCTT+TGG | + | chr4_2:3910988-3911007 | None:intergenic | 30.0% |
| TAGTTACCTGTTTGATATCA+AGG | + | chr4_2:3911032-3911051 | None:intergenic | 30.0% | |
| TTACATTACTGAGAGTGAAA+TGG | + | chr4_2:3911285-3911304 | None:intergenic | 30.0% | |
| TCACTCTCAGTAATGTAAAT+CGG | - | chr4_2:3911287-3911306 | Msa0584450:CDS | 30.0% | |
| !! | AGGCTTGTTAGAATGATATT+TGG | + | chr4_2:3911451-3911470 | None:intergenic | 30.0% |
| !!! | TCAGTTTTAACTTCGTGTTT+AGG | + | chr4_2:3911471-3911490 | None:intergenic | 30.0% |
| !!! | ACGAATCCACAAATTTTTTC+AGG | - | chr4_2:3911510-3911529 | Msa0584450:CDS | 30.0% |
| !!! | CGAATCCACAAATTTTTTCA+GGG | - | chr4_2:3911511-3911530 | Msa0584450:CDS | 30.0% |
| !!! | ATTTTTTCAGGGTTTTTAGG+AGG | - | chr4_2:3911522-3911541 | Msa0584450:CDS | 30.0% |
| ACTATCAGAGAAACAAAAAG+GGG | + | chr4_2:3911834-3911853 | None:intergenic | 30.0% | |
| CACTATCAGAGAAACAAAAA+GGG | + | chr4_2:3911835-3911854 | None:intergenic | 30.0% | |
| ACACTATCAGAGAAACAAAA+AGG | + | chr4_2:3911836-3911855 | None:intergenic | 30.0% | |
| ! | ACCAATTAGATTTTCACGGT+TGG | + | chr4_2:3908878-3908897 | None:intergenic | 35.0% |
| TTACTCAAAACGTCAAAGCT+AGG | - | chr4_2:3908988-3909007 | Msa0584450:three_prime_UTR | 35.0% | |
| ! | GAAAGGAGTATGTGAAACTA+TGG | - | chr4_2:3909396-3909415 | Msa0584450:intron | 35.0% |
| AATAAAGGGTTGTGTGTTCT+TGG | - | chr4_2:3909436-3909455 | Msa0584450:intron | 35.0% | |
| ! | ATAATGGAGGAAGAGAAGAA+GGG | + | chr4_2:3909487-3909506 | None:intergenic | 35.0% |
| TTTCGATATACTTGCAAAGG+AGG | - | chr4_2:3909530-3909549 | Msa0584450:intron | 35.0% | |
| AATGTGAAGTGGTATGTGTT+TGG | - | chr4_2:3909614-3909633 | Msa0584450:intron | 35.0% | |
| !!! | TTTGGTTTTGGAATGGCTTT+TGG | - | chr4_2:3909752-3909771 | Msa0584450:CDS | 35.0% |
| ! | TTCATCTCTTGCTAAGGTTT+TGG | - | chr4_2:3909796-3909815 | Msa0584450:CDS | 35.0% |
| !! | GAAAGGTATCCTCATCTATA+TGG | - | chr4_2:3909842-3909861 | Msa0584450:CDS | 35.0% |
| ATCTATATGGAAGTGATGGT+AGG | - | chr4_2:3909855-3909874 | Msa0584450:CDS | 35.0% | |
| TCTATATGGAAGTGATGGTA+GGG | - | chr4_2:3909856-3909875 | Msa0584450:CDS | 35.0% | |
| TTCAACACACTCTCTTTGAT+TGG | - | chr4_2:3910112-3910131 | Msa0584450:CDS | 35.0% | |
| AGGTCCCATATAAATTTGGT+GGG | + | chr4_2:3910155-3910174 | None:intergenic | 35.0% | |
| TAGGTCCCATATAAATTTGG+TGG | + | chr4_2:3910156-3910175 | None:intergenic | 35.0% | |
| TATATGGGACCTACATGATT+TGG | - | chr4_2:3910163-3910182 | Msa0584450:CDS | 35.0% | |
| TCTGTTTACATTAGTCCTTC+TGG | - | chr4_2:3910304-3910323 | Msa0584450:intron | 35.0% | |
| TTTACATTAGTCCTTCTGGA+TGG | - | chr4_2:3910308-3910327 | Msa0584450:intron | 35.0% | |
| GCATTAATTAGGCTCGTTAA+AGG | + | chr4_2:3910462-3910481 | None:intergenic | 35.0% | |
| AAGATTGGATCTGTGTAATC+TGG | + | chr4_2:3910586-3910605 | None:intergenic | 35.0% | |
| GTAGTCATGTTTGGAAAGAT+TGG | + | chr4_2:3910601-3910620 | None:intergenic | 35.0% | |
| ! | CTCTGAGAATCAACATTTAC+TGG | + | chr4_2:3910652-3910671 | None:intergenic | 35.0% |
| !! | CAGTAAATGTTGATTCTCAG+AGG | - | chr4_2:3910650-3910669 | Msa0584450:intron | 35.0% |
| ATGGACAATTTCAGTGTCAT+GGG | - | chr4_2:3910711-3910730 | Msa0584450:intron | 35.0% | |
| TCCGGTAAAAACATATGGTT+GGG | + | chr4_2:3910757-3910776 | None:intergenic | 35.0% | |
| ATCCGGTAAAAACATATGGT+TGG | + | chr4_2:3910758-3910777 | None:intergenic | 35.0% | |
| CAACATCCGGTAAAAACATA+TGG | + | chr4_2:3910762-3910781 | None:intergenic | 35.0% | |
| AACATTCAAGCAGTGGAAAA+AGG | - | chr4_2:3910795-3910814 | Msa0584450:CDS | 35.0% | |
| ACATTCAAGCAGTGGAAAAA+GGG | - | chr4_2:3910796-3910815 | Msa0584450:CDS | 35.0% | |
| ! | GTAGATCTTTTACAAGGATC+AGG | + | chr4_2:3910868-3910887 | None:intergenic | 35.0% |
| GAAACTAGAAGTCATCAAAG+TGG | - | chr4_2:3910990-3911009 | Msa0584450:CDS | 35.0% | |
| CAAGATCTCAGGTTCAAATT+TGG | + | chr4_2:3911246-3911265 | None:intergenic | 35.0% | |
| AAAACACTTGGTCACATCAT+AGG | + | chr4_2:3911715-3911734 | None:intergenic | 35.0% | |
| GCCAACCGTGAAAATCTAAT+TGG | - | chr4_2:3908874-3908893 | Msa0584450:three_prime_UTR | 40.0% | |
| TTGCTTCAAGCAAGAGTTCA+TGG | - | chr4_2:3909366-3909385 | Msa0584450:intron | 40.0% | |
| GAGTTCATGGACAAAGAGAA+AGG | - | chr4_2:3909379-3909398 | Msa0584450:intron | 40.0% | |
| ! | AGGAGTATGTGAAACTATGG+TGG | - | chr4_2:3909399-3909418 | Msa0584450:intron | 40.0% |
| ! | GAAGGGTCATCTTCATTTTG+TGG | + | chr4_2:3909470-3909489 | None:intergenic | 40.0% |
| ! | CATAATGGAGGAAGAGAAGA+AGG | + | chr4_2:3909488-3909507 | None:intergenic | 40.0% |
| CGGTTTCGATATACTTGCAA+AGG | - | chr4_2:3909527-3909546 | Msa0584450:intron | 40.0% | |
| ! | GATTTTCTTCCCGGAGAATT+TGG | - | chr4_2:3909649-3909668 | Msa0584450:intron | 40.0% |
| AGAGTCTTCACCAAATTCTC+CGG | + | chr4_2:3909662-3909681 | None:intergenic | 40.0% | |
| CTGAGATTTACGAGCAGAAT+CGG | - | chr4_2:3909726-3909745 | Msa0584450:CDS | 40.0% | |
| !! | CAGAATCGGTTGTTTGGTTT+TGG | - | chr4_2:3909740-3909759 | Msa0584450:CDS | 40.0% |
| !!! | TCGGTTGTTTGGTTTTGGAA+TGG | - | chr4_2:3909745-3909764 | Msa0584450:CDS | 40.0% |
| !!! | TCTTGCTAAGGTTTTGGCTA+AGG | - | chr4_2:3909802-3909821 | Msa0584450:CDS | 40.0% |
| CCATCACTTCCATATAGATG+AGG | + | chr4_2:3909854-3909873 | None:intergenic | 40.0% | |
| CCTCATCTATATGGAAGTGA+TGG | - | chr4_2:3909851-3909870 | Msa0584450:CDS | 40.0% | |
| !! | TGTTTAGCTGAACTTGGTGT+TGG | - | chr4_2:3909887-3909906 | Msa0584450:CDS | 40.0% |
| TTTGTTACCTGATGGAAACC+TGG | + | chr4_2:3909926-3909945 | None:intergenic | 40.0% | |
| TGGGACCCACCAAATTTATA+TGG | - | chr4_2:3910147-3910166 | Msa0584450:CDS | 40.0% | |
| GGGACCCACCAAATTTATAT+GGG | - | chr4_2:3910148-3910167 | Msa0584450:CDS | 40.0% | |
| TAATTAGGCTCGTTAAAGGG+AGG | + | chr4_2:3910458-3910477 | None:intergenic | 40.0% | |
| GCTTGTGTAGTAGTCATGTT+TGG | + | chr4_2:3910610-3910629 | None:intergenic | 40.0% | |
| ! | GCTATGACAGATGGTTTTCA+TGG | - | chr4_2:3910692-3910711 | Msa0584450:intron | 40.0% |
| CATGGACAATTTCAGTGTCA+TGG | - | chr4_2:3910710-3910729 | Msa0584450:intron | 40.0% | |
| TGGACAATTTCAGTGTCATG+GGG | - | chr4_2:3910712-3910731 | Msa0584450:intron | 40.0% | |
| CCGGTAAAAACATATGGTTG+GGG | + | chr4_2:3910756-3910775 | None:intergenic | 40.0% | |
| !! | CCCCAACCATATGTTTTTAC+CGG | - | chr4_2:3910753-3910772 | Msa0584450:intron | 40.0% |
| TATTTCGATAGCGTCTCTTC+TGG | - | chr4_2:3910895-3910914 | Msa0584450:CDS | 40.0% | |
| GCTAGACCTTGATATCAAAC+AGG | - | chr4_2:3911023-3911042 | Msa0584450:CDS | 40.0% | |
| GGATACTTAGCACCAATAAC+AGG | + | chr4_2:3911156-3911175 | None:intergenic | 40.0% | |
| TCTAGCTAACCATCTTCAGT+CGG | - | chr4_2:3911211-3911230 | Msa0584450:CDS | 40.0% | |
| TCTCAGGTTCAAATTTGGAG+AGG | + | chr4_2:3911241-3911260 | None:intergenic | 40.0% | |
| ! | TACTGAGAGTGAAATGGACT+CGG | + | chr4_2:3911279-3911298 | None:intergenic | 40.0% |
| !! | TTTCAGGGTTTTTAGGAGGA+TGG | - | chr4_2:3911526-3911545 | Msa0584450:CDS | 40.0% |
| ACATCACAACAATGCCTTCT+TGG | + | chr4_2:3911606-3911625 | None:intergenic | 40.0% | |
| CTCTAACAGCAATTTCCAGT+TGG | + | chr4_2:3911650-3911669 | None:intergenic | 40.0% | |
| AAGTGAACCACCGTAATCCA+CGG | + | chr4_2:3909034-3909053 | None:intergenic | 45.0% | |
| TCTTCGGAGACACATAATGG+AGG | + | chr4_2:3909500-3909519 | None:intergenic | 45.0% | |
| GTGTCTTCGGAGACACATAA+TGG | + | chr4_2:3909503-3909522 | None:intergenic | 45.0% | |
| GAGTCTTCACCAAATTCTCC+GGG | + | chr4_2:3909661-3909680 | None:intergenic | 45.0% | |
| TACGAGCAGAATCGGTTGTT+TGG | - | chr4_2:3909734-3909753 | Msa0584450:CDS | 45.0% | |
| !!! | GGTTTTGGAATGGCTTTTGG+TGG | - | chr4_2:3909755-3909774 | Msa0584450:CDS | 45.0% |
| GTTGGATTGACACATGAACC+AGG | - | chr4_2:3909905-3909924 | Msa0584450:CDS | 45.0% | |
| ACATGAACCAGGTTTCCATC+AGG | - | chr4_2:3909916-3909935 | Msa0584450:CDS | 45.0% | |
| ! | ATGGGACCTACATGATTTGG+TGG | - | chr4_2:3910166-3910185 | Msa0584450:CDS | 45.0% |
| !! | TGGGACCTACATGATTTGGT+GGG | - | chr4_2:3910167-3910186 | Msa0584450:CDS | 45.0% |
| TGGATCCCACCAAATCATGT+AGG | + | chr4_2:3910175-3910194 | None:intergenic | 45.0% | |
| TTACTGGATGCGCAGCTAAT+AGG | + | chr4_2:3910540-3910559 | None:intergenic | 45.0% | |
| AGAGACAGTAAGGGAGTTAC+TGG | + | chr4_2:3910556-3910575 | None:intergenic | 45.0% | |
| GGATGATGCAGAGACAGTAA+GGG | + | chr4_2:3910565-3910584 | None:intergenic | 45.0% | |
| TGGATGATGCAGAGACAGTA+AGG | + | chr4_2:3910566-3910585 | None:intergenic | 45.0% | |
| TTACAAGGATCAGGGTGAAG+TGG | + | chr4_2:3910859-3910878 | None:intergenic | 45.0% | |
| AGCGTCTCTTCTGGTAAAGA+TGG | - | chr4_2:3910904-3910923 | Msa0584450:CDS | 45.0% | |
| GTAGTCATCGACAAAGCTGA+GGG | + | chr4_2:3911177-3911196 | None:intergenic | 45.0% | |
| AGTAGTCATCGACAAAGCTG+AGG | + | chr4_2:3911178-3911197 | None:intergenic | 45.0% | |
| CTAGCTAACCATCTTCAGTC+GGG | - | chr4_2:3911212-3911231 | Msa0584450:CDS | 45.0% | |
| TGAACCTGAGATCTTGCTGA+AGG | - | chr4_2:3911250-3911269 | Msa0584450:CDS | 45.0% | |
| AGTTGGTCACTAGCACTTGA+GGG | + | chr4_2:3911633-3911652 | None:intergenic | 45.0% | |
| !! | GTTTGTTGTTTCTCACGCCG+TGG | - | chr4_2:3909014-3909033 | Msa0584450:exon | 50.0% |
| ! | GTTTCTCACGCCGTGGATTA+CGG | - | chr4_2:3909021-3909040 | Msa0584450:exon | 50.0% |
| ! | TCGAAACCGCGAAGTGTCTT+CGG | + | chr4_2:3909516-3909535 | None:intergenic | 50.0% |
| GAGGACTTCGATCAGCTATC+CGG | - | chr4_2:3909549-3909568 | Msa0584450:intron | 50.0% | |
| AGGACTTCGATCAGCTATCC+GGG | - | chr4_2:3909550-3909569 | Msa0584450:intron | 50.0% | |
| ! | CGACGACACGATTTTCTTCC+CGG | - | chr4_2:3909640-3909659 | Msa0584450:intron | 50.0% |
| ATGCGCAGCTAATAGGCCAA+AGG | + | chr4_2:3910533-3910552 | None:intergenic | 50.0% | |
| TCTCGCGCATTCACAACATC+CGG | + | chr4_2:3910775-3910794 | None:intergenic | 50.0% | |
| CGCGAGAAACATTCAAGCAG+TGG | - | chr4_2:3910788-3910807 | Msa0584450:intron | 50.0% | |
| GATGCCTTCAGCAAGATCTC+AGG | + | chr4_2:3911257-3911276 | None:intergenic | 50.0% | |
| TTCAGTTGCAGGCTCCAAGA+AGG | - | chr4_2:3911589-3911608 | Msa0584450:five_prime_UTR | 50.0% | |
| CAGTTGGTCACTAGCACTTG+AGG | + | chr4_2:3911634-3911653 | None:intergenic | 50.0% | |
| CTCAAGTGCTAGTGACCAAC+TGG | - | chr4_2:3911632-3911651 | Msa0584450:five_prime_UTR | 50.0% | |
| GTGTCTCCGAAGACACTTCG+CGG | - | chr4_2:3909507-3909526 | Msa0584450:intron | 55.0% | |
| ACTTCGATCAGCTATCCGGG+TGG | - | chr4_2:3909553-3909572 | Msa0584450:intron | 55.0% | |
| !!! | GGAATGGCTTTTGGTGGTGC+TGG | - | chr4_2:3909761-3909780 | Msa0584450:CDS | 55.0% |
| AGAGGAGACCCGACTGAAGA+TGG | + | chr4_2:3911223-3911242 | None:intergenic | 55.0% | |
| ! | TCTCACGCCGTGGATTACGG+TGG | - | chr4_2:3909024-3909043 | Msa0584450:exon | 60.0% |
| GCGTGTTGTCGCGGAGACTG+TGG | - | chr4_2:3909577-3909596 | Msa0584450:intron | 65.0% | |
| CCGCGACAACACGCGCCACC+CGG | + | chr4_2:3909571-3909590 | None:intergenic | 75.0% | |
| CCGGGTGGCGCGTGTTGTCG+CGG | - | chr4_2:3909568-3909587 | Msa0584450:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 3908855 | 3911877 | 3908855 | ID=Msa0584450;Name=Msa0584450 |
| chr4_2 | mRNA | 3908855 | 3911877 | 3908855 | ID=Msa0584450-mRNA-1;Parent=Msa0584450;Name=Msa0584450-mRNA-1;_AED=0.02;_eAED=0.02;_QI=297|0.5|0.66|1|0.5|0.33|3|173|482 |
| chr4_2 | exon | 3908855 | 3909138 | 3908855 | ID=Msa0584450-mRNA-1:exon:1070;Parent=Msa0584450-mRNA-1 |
| chr4_2 | exon | 3909670 | 3910221 | 3909670 | ID=Msa0584450-mRNA-1:exon:1069;Parent=Msa0584450-mRNA-1 |
| chr4_2 | exon | 3910795 | 3911877 | 3910795 | ID=Msa0584450-mRNA-1:exon:1068;Parent=Msa0584450-mRNA-1 |
| chr4_2 | five_prime_UTR | 3911581 | 3911877 | 3911581 | ID=Msa0584450-mRNA-1:five_prime_utr;Parent=Msa0584450-mRNA-1 |
| chr4_2 | CDS | 3910795 | 3911580 | 3910795 | ID=Msa0584450-mRNA-1:cds;Parent=Msa0584450-mRNA-1 |
| chr4_2 | CDS | 3909670 | 3910221 | 3909670 | ID=Msa0584450-mRNA-1:cds;Parent=Msa0584450-mRNA-1 |
| chr4_2 | CDS | 3909028 | 3909138 | 3909028 | ID=Msa0584450-mRNA-1:cds;Parent=Msa0584450-mRNA-1 |
| chr4_2 | three_prime_UTR | 3908855 | 3909027 | 3908855 | ID=Msa0584450-mRNA-1:three_prime_utr;Parent=Msa0584450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
