AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0641080

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641080 MtrunA17_Chr4g0025571 96.208 923 33 2 1 923 1 921 0.0 1840
Msa0641080 MtrunA17_Chr2g0322001 60.577 936 297 20 1 921 1 879 0.0 1023
Msa0641080 MtrunA17_Chr1g0188861 54.795 219 91 2 694 907 545 760 8.70e-65 233
Msa0641080 MtrunA17_Chr7g0261061 56.771 192 79 2 709 896 466 657 3.02e-57 209
Msa0641080 MtrunA17_Chr7g0261061 34.225 187 104 5 5 184 5 179 1.32e-16 84.7
Msa0641080 MtrunA17_Chr1g0184231 54.124 194 83 3 709 896 466 659 4.88e-55 202
Msa0641080 MtrunA17_Chr1g0184231 30.556 216 113 7 1 209 1 186 1.81e-19 94.0
Msa0641080 MtrunA17_Chr7g0239641 35.644 303 171 7 588 887 385 666 4.20e-43 167
Msa0641080 MtrunA17_Chr7g0239641 30.688 189 105 5 5 180 6 181 4.72e-19 92.4
Msa0641080 MtrunA17_Chr2g0317011 29.577 213 90 9 5 190 20 199 1.52e-13 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0641080 AT2G27230.2 52.618 401 127 9 514 905 283 629 5.21e-114 364
Msa0641080 AT2G27230.2 53.909 243 85 5 1 239 1 220 7.34e-69 242
Msa0641080 AT2G27230.1 52.618 401 127 9 514 905 283 629 5.21e-114 364
Msa0641080 AT2G27230.1 53.909 243 85 5 1 239 1 220 7.34e-69 242
Msa0641080 AT1G64625.3 54.229 201 80 2 700 900 309 497 1.70e-61 218
Msa0641080 AT1G64625.2 54.229 201 80 2 700 900 323 511 2.11e-61 218
Msa0641080 AT1G64625.1 54.229 201 80 2 700 900 333 521 3.25e-61 218
Msa0641080 AT1G06150.1 55.026 189 83 1 713 899 543 731 7.84e-59 215
Msa0641080 AT1G06150.2 54.450 191 83 2 713 899 543 733 3.59e-57 211
Msa0641080 AT2G31280.1 53.439 189 79 2 713 899 535 716 6.78e-55 204
Msa0641080 AT2G31280.1 32.044 181 93 4 1 180 1 152 5.11e-18 89.7
Msa0641080 AT2G31280.3 49.515 206 78 2 713 899 535 733 4.38e-53 198
Msa0641080 AT2G31280.3 32.044 181 93 4 1 180 1 152 5.42e-18 89.7
Msa0641080 AT2G31280.2 48.223 197 71 2 713 885 507 696 1.34e-47 182
Msa0641080 AT1G64625.4 59.140 93 37 1 700 792 323 414 7.70e-27 115
Msa0641080 AT3G15240.2 27.014 211 103 8 5 190 34 218 3.94e-12 69.3

Find 266 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGATGATGGATTCATATT+AGG 0.130953 4_3:-40825648 None:intergenic
CAAATATCTGGTTTAGGTTT+TGG 0.145638 4_3:-40825401 None:intergenic
CCTGATATTGCTTCATTAAC+AGG 0.206849 4_3:-40826344 None:intergenic
TTCATCCCACTACTACAAAT+TGG 0.216782 4_3:-40825756 None:intergenic
TTGAATCATTTGGCGATCTT+TGG 0.228180 4_3:-40826816 None:intergenic
CGATCTTTGGGTCGAGGCCT+TGG 0.234640 4_3:-40826803 None:intergenic
GTATTCTCTTGTTGAGCTTT+TGG 0.235633 4_3:-40825438 None:intergenic
GACTTTGCAGGCTGTTAATC+TGG 0.237499 4_3:+40824105 Msa0641080:intron
AACAGAACATGTTTCTTCTT+TGG 0.237529 4_3:+40822568 Msa0641080:five_prime_UTR
TCTAACAACACTTCACTTCT+TGG 0.240160 4_3:+40825726 Msa0641080:CDS
GATTCCAATCTGAATGGTTT+TGG 0.257248 4_3:+40825567 Msa0641080:CDS
CCAAGATAGCTTGAAGCTTT+AGG 0.264305 4_3:+40829106 Msa0641080:three_prime_UTR
TCTCAAACCACTTCCATATA+TGG 0.269006 4_3:+40826647 Msa0641080:CDS
TTGATGATGGATTCATATTA+GGG 0.275734 4_3:-40825647 None:intergenic
CAAGAAAAGCATATGTTTGA+TGG 0.277270 4_3:-40827022 None:intergenic
CCTGCATTCCAGCTGAAAAT+TGG 0.285378 4_3:-40824850 None:intergenic
TTTCTTTCCTGTAATTTGAT+TGG 0.291344 4_3:+40829156 Msa0641080:three_prime_UTR
GCCGACTTAATCAGAGGATT+AGG 0.307196 4_3:+40827951 Msa0641080:CDS
AAGCCTCTTACGGTTTGATT+TGG 0.311882 4_3:-40826765 None:intergenic
CTACTTTGATTCCATTGGTT+TGG 0.316881 4_3:+40822631 Msa0641080:five_prime_UTR
TTTGATTTGGAAACTTCTTC+TGG 0.319876 4_3:-40826752 None:intergenic
GGCAAAGGCTATCAAATATC+TGG 0.320742 4_3:-40825413 None:intergenic
AAGGATAGATGATTTGCTTC+AGG 0.324044 4_3:+40825995 Msa0641080:CDS
TCAACTTGGTTCTTTCTTGC+CGG 0.324554 4_3:+40825002 Msa0641080:CDS
CCCCATGGGGTTGTTCAACT+TGG 0.332845 4_3:+40824988 Msa0641080:CDS
ATCTAGTCTTATTAGACTTC+AGG 0.333736 4_3:+40829015 Msa0641080:three_prime_UTR
CATGTCACTAGTTCGACTTT+TGG 0.338043 4_3:+40828852 Msa0641080:CDS
CCTAAAGCTTCAAGCTATCT+TGG 0.338474 4_3:-40829106 None:intergenic
TGTCGTGGTAGTTAGTTTCT+AGG 0.341520 4_3:+40822537 Msa0641080:five_prime_UTR
TGATGACTTGTTTGATGTCT+TGG 0.342538 4_3:+40826184 Msa0641080:CDS
GAAGAACTTGATCTTTCAAT+TGG 0.344631 4_3:+40825140 Msa0641080:CDS
TTAAGATCCTCAACAATGAT+AGG 0.347902 4_3:-40827765 None:intergenic
TGAAACTGCTGAATGGAAAC+TGG 0.349119 4_3:+40826222 Msa0641080:CDS
TACGTTGTTTGCAGATGAAT+TGG 0.349339 4_3:+40826247 Msa0641080:CDS
GGCTATCAAATATCTGGTTT+AGG 0.351014 4_3:-40825407 None:intergenic
AAAATCGGCAGTGGATAATT+CGG 0.352451 4_3:-40825829 None:intergenic
ACTAAGTTGAGAACCATATA+TGG 0.352528 4_3:-40826660 None:intergenic
GATCTTTGGGTCGAGGCCTT+GGG 0.352642 4_3:-40826802 None:intergenic
TTGAATAGTCTTCGGATAGA+AGG 0.353328 4_3:-40825179 None:intergenic
ATAGTCCAATGCCTGTTCTA+AGG 0.353351 4_3:+40825334 Msa0641080:CDS
TGATCATGCTTTAAGTCAAC+TGG 0.355184 4_3:-40825948 None:intergenic
CGAGGCCTTGGGTTCTCTCC+AGG 0.360591 4_3:-40826791 None:intergenic
TTTCAATTGGGACATGTTCC+CGG 0.361476 4_3:+40825153 Msa0641080:CDS
TGAATCATTTGGCGATCTTT+GGG 0.364318 4_3:-40826815 None:intergenic
AGGTGATCAGTGTTTGTTCC+TGG 0.365226 4_3:-40826380 None:intergenic
GTTAGATCCATTAGCTACTA+AGG 0.365982 4_3:-40825292 None:intergenic
TCACGCGATCTTGAATCATT+TGG 0.367296 4_3:-40826826 None:intergenic
AGTGAGGGTTGTTGAGAAAA+GGG 0.369503 4_3:-40822045 None:intergenic
CCGACTTAATCAGAGGATTA+GGG 0.369714 4_3:+40827952 Msa0641080:CDS
CAACACACCAATCAAATTAC+AGG 0.373634 4_3:-40829163 None:intergenic
ATGGTTCTCAACTTAGTTCA+TGG 0.375053 4_3:+40826666 Msa0641080:CDS
TTTCCAAATCAAACCGTAAG+AGG 0.375063 4_3:+40826762 Msa0641080:CDS
ACAGATGCTTTGTGAGGAAC+GGG 0.380475 4_3:+40827911 Msa0641080:intron
CATTTCATCAGAATTCTGAT+TGG 0.381764 4_3:-40826438 None:intergenic
AGGCAATCACGAAGAAAATC+AGG 0.383259 4_3:-40826080 None:intergenic
AAGCTCGCAATGACAAGATC+TGG 0.388708 4_3:+40828000 Msa0641080:CDS
GGACTATGCAACGAATTACT+TGG 0.391316 4_3:-40825318 None:intergenic
GATGTGAAACTGAAAATAAA+TGG 0.392583 4_3:-40822073 None:intergenic
TCATCCCACTACTACAAATT+GGG 0.398306 4_3:-40825755 None:intergenic
CTCCAGGTTTAAGCCTCTTA+CGG 0.400263 4_3:-40826775 None:intergenic
TGTTAGATAATGGAGAATAT+CGG 0.405356 4_3:+40825102 Msa0641080:intron
TGCGCTCCCTTAGTAGCTAA+TGG 0.406239 4_3:+40825285 Msa0641080:CDS
ATTGTAGGATTTAGACATAA+GGG 0.406933 4_3:+40829210 Msa0641080:three_prime_UTR
GAGTGAGGGTTGTTGAGAAA+AGG 0.408682 4_3:-40822046 None:intergenic
GAATGCTACTTTGATTCCAT+TGG 0.416360 4_3:+40822626 Msa0641080:five_prime_UTR
TCGAGACCACAGCATCTAAC+AGG 0.418656 4_3:-40826400 None:intergenic
CTGTAATTTGATTGGTGTGT+TGG 0.419958 4_3:+40829164 Msa0641080:three_prime_UTR
CAGAACTAAGAATGAACAAA+AGG 0.421108 4_3:-40822604 None:intergenic
AAAGCATGATCAAGATGGTT+TGG 0.424032 4_3:+40825959 Msa0641080:CDS
CTAATTTACCTTACCAAGAC+AGG 0.424042 4_3:+40824186 Msa0641080:CDS
TTATTCCTGTGCTTCCCCAT+GGG 0.425095 4_3:+40824974 Msa0641080:CDS
TATACCGGAGGATGGAATTC+CGG 0.427305 4_3:+40822430 Msa0641080:five_prime_UTR
AAGACCAAAACCATTCAGAT+TGG 0.429209 4_3:-40825571 None:intergenic
TTCAAAATGAAACTGCTGAA+TGG 0.429885 4_3:+40826215 Msa0641080:CDS
GCTGATAAGCTGAAACAGAC+TGG 0.431363 4_3:+40827063 Msa0641080:CDS
TTTATTTCTCCCCTTAGAAC+AGG 0.431461 4_3:-40825345 None:intergenic
GATGACTTGTTTGATGTCTT+GGG 0.432698 4_3:+40826185 Msa0641080:CDS
GTTATTCCTGTGCTTCCCCA+TGG 0.432971 4_3:+40824973 Msa0641080:CDS
AGCCACTGAGTCTGAGACAT+TGG 0.433015 4_3:-40821994 None:intergenic
CTCTTTGTGCTAGGAATCAA+TGG 0.434131 4_3:+40822710 Msa0641080:CDS
GCTAATCGCATGCATCTAGA+AGG 0.434368 4_3:+40825906 Msa0641080:CDS
CCTGTTAATGAAGCAATATC+AGG 0.434431 4_3:+40826344 Msa0641080:CDS
CGTGAAAACAGTGTTTCAAC+TGG 0.436351 4_3:+40826716 Msa0641080:CDS
TGAGGTTGGCTCACAATCAA+TGG 0.439147 4_3:+40827737 Msa0641080:CDS
TTCAGATGTATAGATATTGT+AGG 0.441487 4_3:+40829195 Msa0641080:three_prime_UTR
TAAACCATCATGTTATCAAC+TGG 0.446367 4_3:-40828913 None:intergenic
AATAATTCTGTCAATGTTGC+TGG 0.446556 4_3:+40824293 Msa0641080:CDS
TTAACTGATTCCAATCTGAA+TGG 0.447162 4_3:+40825561 Msa0641080:CDS
CTTGTTTGATGTCTTGGGCA+TGG 0.452227 4_3:+40826190 Msa0641080:CDS
TTGCTGTTATGTAGGATACT+TGG 0.455465 4_3:+40824423 Msa0641080:intron
CTTGGACGGGCCGCATTCAC+AGG 0.456239 4_3:+40824441 Msa0641080:CDS
AAGTCTTGTTGAATAGTCTT+CGG 0.456401 4_3:-40825187 None:intergenic
GTGCAGATTGTTAGTAAAGA+AGG 0.456740 4_3:+40827666 Msa0641080:intron
TCTGTCAATGTTGCTGGTCA+AGG 0.459032 4_3:+40824299 Msa0641080:CDS
TTACGTGAAATTGTGCCTAA+TGG 0.460598 4_3:+40826854 Msa0641080:CDS
ATTGGGAGAAGAGAAGAGAA+TGG 0.464368 4_3:-40821976 None:intergenic
ATCTTGTACGCAACTTTCAT+CGG 0.467285 4_3:+40826157 Msa0641080:CDS
TATTGTAGGATTTAGACATA+AGG 0.468186 4_3:+40829209 Msa0641080:three_prime_UTR
ACCAAGACAGGGAAGGGTGC+TGG 0.468720 4_3:+40824198 Msa0641080:CDS
ACCAGCACCCTTCCCTGTCT+TGG 0.468823 4_3:-40824199 None:intergenic
GAGACGGTGATGGAATCTTC+AGG 0.469515 4_3:-40826019 None:intergenic
AAATCGGCAGTGGATAATTC+GGG 0.469629 4_3:-40825828 None:intergenic
AAGAACTTGATCTTTCAATT+GGG 0.470150 4_3:+40825141 Msa0641080:CDS
CTAATAGAACTTGTTTCCGC+AGG 0.472730 4_3:-40826590 None:intergenic
ACTTCGAGGGAGGGGCTACA+TGG 0.472832 4_3:+40827709 Msa0641080:CDS
AGGGGCTACATGGGCATATG+AGG 0.472884 4_3:+40827719 Msa0641080:CDS
CTTTGAAGACTCTTTGTGCT+AGG 0.476288 4_3:+40822701 Msa0641080:CDS
AAAATAAATGGAAGTGAGTG+AGG 0.477766 4_3:-40822061 None:intergenic
GAAACAAGTTCTATTAGATC+TGG 0.479035 4_3:+40826596 Msa0641080:CDS
CGAGATTCAAGGTTGTTAAG+AGG 0.479777 4_3:-40822296 None:intergenic
AGGATAGATGATTTGCTTCA+GGG 0.484084 4_3:+40825996 Msa0641080:CDS
TATGCAACGAATTACTTGGT+TGG 0.484749 4_3:-40825314 None:intergenic
TAGTCCAATGCCTGTTCTAA+GGG 0.486989 4_3:+40825335 Msa0641080:CDS
AAAAGATAACTTCGAGGGAG+GGG 0.489680 4_3:+40827701 Msa0641080:CDS
AACAACACTTCACTTCTTGG+AGG 0.490153 4_3:+40825729 Msa0641080:CDS
CATTCCAGACCAAGAAAACT+AGG 0.490562 4_3:-40828956 None:intergenic
TTTGTCGGATTGTGAAGCTT+TGG 0.490893 4_3:-40821952 None:intergenic
TCTCCCCTTAGAACAGGCAT+TGG 0.493677 4_3:-40825339 None:intergenic
GTATATACCTTTGCTCCATT+AGG 0.494185 4_3:-40826869 None:intergenic
GGTGATCAGTGTTTGTTCCT+GGG 0.495320 4_3:-40826379 None:intergenic
CACAGATGCTTTGTGAGGAA+CGG 0.495392 4_3:+40827910 Msa0641080:intron
TGCACCGGAATTCCATCCTC+CGG 0.495889 4_3:-40822434 None:intergenic
GCCACTGAGTCTGAGACATT+GGG 0.496635 4_3:-40821993 None:intergenic
TACTAAGGGAGCGCAGTTTG+AGG 0.497986 4_3:-40825277 None:intergenic
TAGGGTTAACCATCTTGAAA+GGG 0.499756 4_3:+40827970 Msa0641080:CDS
ATTTGGCGATCTTTGGGTCG+AGG 0.501151 4_3:-40826809 None:intergenic
ACTAGATTTGATGTCAATCA+TGG 0.503050 4_3:-40828999 None:intergenic
AGGGTTGTTGAGAAAAGGGA+AGG 0.503727 4_3:-40822041 None:intergenic
ATAGTTACCACAGTTCTGTA+TGG 0.503951 4_3:+40825367 Msa0641080:CDS
ACACAATCCCACGAGATTCA+AGG 0.505287 4_3:-40822307 None:intergenic
TTCCATGACCCCTTTCAAGA+TGG 0.505484 4_3:-40827979 None:intergenic
CAAGAAAACTAGGTGGATTG+TGG 0.506546 4_3:-40828946 None:intergenic
TTGAATCCTTAGCTGAGAAT+CGG 0.508438 4_3:-40824228 None:intergenic
AACAGAATCAGTCACAGATC+CGG 0.511871 4_3:-40825226 None:intergenic
TCTTGTACGCAACTTTCATC+GGG 0.512231 4_3:+40826158 Msa0641080:CDS
AAGAAAACTAGGTGGATTGT+GGG 0.512317 4_3:-40828945 None:intergenic
TTAGGGTTAACCATCTTGAA+AGG 0.518572 4_3:+40827969 Msa0641080:CDS
ACGTGTGGATTAGAAGATAC+AGG 0.518675 4_3:-40825249 None:intergenic
CACCCTTCCCTGTCTTGGTA+AGG 0.519219 4_3:-40824194 None:intergenic
TGGTTCTCAACTTAGTTCAT+GGG 0.519370 4_3:+40826667 Msa0641080:CDS
CTTCGAGGGAGGGGCTACAT+GGG 0.519484 4_3:+40827710 Msa0641080:CDS
ATATTGAAGACACTTGATGA+TGG 0.521705 4_3:-40825660 None:intergenic
GACTTAAAGCATGATCAAGA+TGG 0.523106 4_3:+40825954 Msa0641080:CDS
GTCTTCGGATAGAAGGGCAC+CGG 0.523585 4_3:-40825172 None:intergenic
AAAGATCACTACTCCAAGAA+AGG 0.526163 4_3:-40829288 None:intergenic
GGAATCCCAATTTGTAGTAG+TGG 0.529036 4_3:+40825750 Msa0641080:CDS
CTGATAAGCTGAAACAGACT+GGG 0.529953 4_3:+40827064 Msa0641080:CDS
ACTTTGCAGGCTGTTAATCT+GGG 0.532556 4_3:+40824106 Msa0641080:intron
TTGAGAACCATATATGGAAG+TGG 0.535342 4_3:-40826654 None:intergenic
CTATTGTCAGTTTCTTGCAC+CGG 0.536270 4_3:-40822449 None:intergenic
GGTATTGGGAGGCAAGGTCA+TGG 0.539765 4_3:+40825621 Msa0641080:CDS
TGCTCCAGTTGATAACATGA+TGG 0.541570 4_3:+40828909 Msa0641080:CDS
GGTTTGCCCTATCATTGTTG+AGG 0.542213 4_3:+40827758 Msa0641080:CDS
CTCATTGATTAACAAAATGA+TGG 0.542701 4_3:+40824268 Msa0641080:CDS
TGTAGGATTTAGACATAAGG+GGG 0.545257 4_3:+40829212 Msa0641080:three_prime_UTR
CAGATTGTTAGTAAAGAAGG+TGG 0.545599 4_3:+40827669 Msa0641080:intron
TTTCTGCCGATTCTCAGCTA+AGG 0.547799 4_3:+40824222 Msa0641080:CDS
GCATAGACGCTCTTCTTGAA+AGG 0.547839 4_3:+40826998 Msa0641080:CDS
AACCATCTTGAAAGGGGTCA+TGG 0.552243 4_3:+40827977 Msa0641080:CDS
AGCTCGCAATGACAAGATCT+GGG 0.552792 4_3:+40828001 Msa0641080:CDS
GGCTGCAGCAAAGATAATGT+TGG 0.552915 4_3:+40826617 Msa0641080:CDS
TGAATAGTCTTCGGATAGAA+GGG 0.554045 4_3:-40825178 None:intergenic
GCTACATGGGCATATGAGGT+TGG 0.554220 4_3:+40827723 Msa0641080:CDS
TACCTTACCAAGACAGGGAA+GGG 0.554594 4_3:+40824192 Msa0641080:CDS
TAAGATCCTCAACAATGATA+GGG 0.559960 4_3:-40827764 None:intergenic
TCAAAACTCCATACCTCTGG+TGG 0.560025 4_3:-40824510 None:intergenic
GTTGTTAAAAGATAACTTCG+AGG 0.563438 4_3:+40827695 Msa0641080:CDS
TACCTCGACTAGCATCTGAC+GGG 0.563664 4_3:-40827793 None:intergenic
AGAACTAAGAATGAACAAAA+GGG 0.566204 4_3:-40822603 None:intergenic
AGAATAATTGCATAGGCTGA+TGG 0.566678 4_3:-40829248 None:intergenic
TTAGATCCATTAGCTACTAA+GGG 0.566817 4_3:-40825291 None:intergenic
ACCAAGTTGAACAACCCCAT+GGG 0.567776 4_3:-40824989 None:intergenic
GAAACAGACTGGGGAATCCA+AGG 0.568580 4_3:+40827074 Msa0641080:CDS
GTATTGGGAGGCAAGGTCAT+GGG 0.569730 4_3:+40825622 Msa0641080:CDS
CGCATAATATGCATGCTGGT+AGG 0.570532 4_3:-40826509 None:intergenic
ATCGCGCATAATATGCATGC+TGG 0.572516 4_3:-40826513 None:intergenic
TAAAAGATAACTTCGAGGGA+GGG 0.573299 4_3:+40827700 Msa0641080:CDS
TGTTATGTAGGATACTTGGA+CGG 0.573756 4_3:+40824427 Msa0641080:intron
AACCGTAAGAGGCTTAAACC+TGG 0.573778 4_3:+40826773 Msa0641080:CDS
CTGTCAATGTTGCTGGTCAA+GGG 0.576788 4_3:+40824300 Msa0641080:CDS
TTGTAGGATTTAGACATAAG+GGG 0.576810 4_3:+40829211 Msa0641080:three_prime_UTR
TTGTTAAAAGATAACTTCGA+GGG 0.576867 4_3:+40827696 Msa0641080:CDS
TCACGATAAAGAGACGGTGA+TGG 0.578801 4_3:-40826029 None:intergenic
GTTTGGCTACCTCGGATCAA+AGG 0.579316 4_3:+40825976 Msa0641080:CDS
AGGACAAAACAAGCAGGGAG+AGG 0.579788 4_3:+40822510 Msa0641080:five_prime_UTR
GGTTTGAGGACAAAACAAGC+AGG 0.580822 4_3:+40822504 Msa0641080:five_prime_UTR
TGAAGCTTTGGTGTGGTCAG+TGG 0.580899 4_3:-40821940 None:intergenic
ACTTTCCTTCCGCAAAACGT+TGG 0.581701 4_3:+40824158 Msa0641080:CDS
TGATCACCTGTTAGATGCTG+TGG 0.584253 4_3:+40826394 Msa0641080:CDS
CTATCTTGGCAAAGTACAGA+AGG 0.584408 4_3:-40829092 None:intergenic
CTTAACAACCTTGAATCTCG+TGG 0.584423 4_3:+40822299 Msa0641080:five_prime_UTR
ACAACCCCATGGGGAAGCAC+AGG 0.584531 4_3:-40824979 None:intergenic
TTAACAACCTTGAATCTCGT+GGG 0.587275 4_3:+40822300 Msa0641080:five_prime_UTR
ATATGCATGCTGGTAGGAGA+AGG 0.587924 4_3:-40826503 None:intergenic
TTCTCAACTTAGTTCATGGG+TGG 0.587945 4_3:+40826670 Msa0641080:CDS
CCCTAATCCTCTGATTAAGT+CGG 0.588706 4_3:-40827952 None:intergenic
CAGTTTGAGGTAATGACGTG+TGG 0.590928 4_3:-40825264 None:intergenic
ATTCTGATGAAATGTCATGT+AGG 0.591662 4_3:+40826447 Msa0641080:CDS
TCAAGATGGTTTGGCTACCT+CGG 0.591915 4_3:+40825968 Msa0641080:CDS
TTATAAATATTAGCTTTGTG+TGG 0.592248 4_3:+40829332 Msa0641080:three_prime_UTR
ACAAGAGAATACAATTGTGA+AGG 0.592735 4_3:+40825449 Msa0641080:CDS
GGAAGGAAAGTTGACGGCAA+AGG 0.597706 4_3:-40824146 None:intergenic
AAATAGGGATGTAACAAGGA+TGG 0.599726 4_3:+40828822 Msa0641080:CDS
GTACCTCGACTAGCATCTGA+CGG 0.600309 4_3:-40827794 None:intergenic
GGTTAGTAACATCTTTATCG+AGG 0.600887 4_3:-40826100 None:intergenic
AATGAAGCAATATCAGGCAA+TGG 0.600955 4_3:+40826350 Msa0641080:CDS
AGCTTTGGTGTGGTCAGTGG+TGG 0.601953 4_3:-40821937 None:intergenic
CTGATGATTTCCTGTGAATG+CGG 0.601961 4_3:-40824451 None:intergenic
TCTCTCTCTATACCGGAGGA+TGG 0.602204 4_3:+40822422 Msa0641080:five_prime_UTR
GAATCCCAATTTGTAGTAGT+GGG 0.602477 4_3:+40825751 Msa0641080:CDS
AATTGTGCCTAATGGAGCAA+AGG 0.604460 4_3:+40826862 Msa0641080:CDS
TAATAGAACTTGTTTCCGCA+GGG 0.607242 4_3:-40826589 None:intergenic
ATGTCTCAACCGAAAACCGA+TGG 0.608652 4_3:+40825681 Msa0641080:CDS
CGGATTGTGAAGCTTTGGTG+TGG 0.610389 4_3:-40821947 None:intergenic
TCCCAATGTCTCAGACTCAG+TGG 0.610926 4_3:+40821992 Msa0641080:five_prime_UTR
CATGTAGGACCACAGTAACA+AGG 0.611360 4_3:+40826462 Msa0641080:CDS
ATCACCGTCTCTTTATCGTG+AGG 0.612303 4_3:+40826031 Msa0641080:CDS
CTTAGTTCATGGGTGGAGAG+TGG 0.612430 4_3:+40826677 Msa0641080:CDS
TTACCTTACCAAGACAGGGA+AGG 0.613125 4_3:+40824191 Msa0641080:CDS
ATGCGCGATAATGTTAGCGA+GGG 0.614578 4_3:+40826527 Msa0641080:CDS
ATCATCTATCCTTTGATCCG+AGG 0.615208 4_3:-40825985 None:intergenic
CATGAAGAATCAAGACTCGC+AGG 0.616350 4_3:-40825489 None:intergenic
TTAAAAGATAACTTCGAGGG+AGG 0.616882 4_3:+40827699 Msa0641080:CDS
GTACCTTTAGGTGTTAAATG+AGG 0.617694 4_3:+40824820 Msa0641080:intron
GGGTTGTTGAGAAAAGGGAA+GGG 0.618321 4_3:-40822040 None:intergenic
TATTCCTGTGCTTCCCCATG+GGG 0.618640 4_3:+40824975 Msa0641080:CDS
GTTATGTAGGATACTTGGAC+GGG 0.621157 4_3:+40824428 Msa0641080:intron
AACCAAGTTGAACAACCCCA+TGG 0.621270 4_3:-40824990 None:intergenic
AGGGTTAACCATCTTGAAAG+GGG 0.622173 4_3:+40827971 Msa0641080:CDS
TGTACTAATCCTTGTTACTG+TGG 0.622925 4_3:-40826471 None:intergenic
CAGATGCTTTGTGAGGAACG+GGG 0.623790 4_3:+40827912 Msa0641080:intron
GAAATAGCCGACTTAATCAG+AGG 0.625312 4_3:+40827945 Msa0641080:CDS
ATTCTCACAGATGCTTTGTG+AGG 0.626614 4_3:+40827905 Msa0641080:intron
CAACAGAAAACACGATAACA+AGG 0.629695 4_3:-40829396 None:intergenic
GGCAATCACGAAGAAAATCA+GGG 0.632385 4_3:-40826079 None:intergenic
TCTTCGGATAGAAGGGCACC+GGG 0.634902 4_3:-40825171 None:intergenic
TTGTTTGCAGATGAATTGGA+TGG 0.635070 4_3:+40826251 Msa0641080:CDS
TTAAACCTGGAGAGAACCCA+AGG 0.635271 4_3:+40826786 Msa0641080:CDS
TTCTCAGCTAAGGATTCAAG+AGG 0.639698 4_3:+40824232 Msa0641080:CDS
TCTCAACCGAAAACCGATGG+AGG 0.643685 4_3:+40825684 Msa0641080:CDS
TGCTCCTCACGATAAAGAGA+CGG 0.648439 4_3:-40826035 None:intergenic
TTGGAGCAAACAGCAAAGGG+AGG 0.648602 4_3:+40828871 Msa0641080:CDS
CATTCACAGGAAATCATCAG+TGG 0.649412 4_3:+40824454 Msa0641080:CDS
TAATTTACCTTACCAAGACA+GGG 0.649461 4_3:+40824187 Msa0641080:CDS
CGGCAGTGGATAATTCGGGA+GGG 0.650332 4_3:-40825824 None:intergenic
TATGCGCGATAATGTTAGCG+AGG 0.651073 4_3:+40826526 Msa0641080:CDS
GTAGGATTTAGACATAAGGG+GGG 0.652289 4_3:+40829213 Msa0641080:three_prime_UTR
TCGGCAGTGGATAATTCGGG+AGG 0.656061 4_3:-40825825 None:intergenic
GCAGGGAGAGGATCGTGTCG+TGG 0.658900 4_3:+40822522 Msa0641080:five_prime_UTR
TCCCCGTCAGATGCTAGTCG+AGG 0.659873 4_3:+40827791 Msa0641080:CDS
GAGATGCTCTTCACTAACTG+CGG 0.664064 4_3:-40829057 None:intergenic
GTTTGAGGACAAAACAAGCA+GGG 0.671345 4_3:+40822505 Msa0641080:five_prime_UTR
AGTCCAATGCCTGTTCTAAG+GGG 0.678929 4_3:+40825336 Msa0641080:CDS
AGGCAAATAGGGATGTAACA+AGG 0.686758 4_3:+40828818 Msa0641080:intron
TGCGCGATAATGTTAGCGAG+GGG 0.687357 4_3:+40826528 Msa0641080:CDS
TAAAGATGTATATCCACCAG+AGG 0.698085 4_3:+40824497 Msa0641080:CDS
CCAAGTTGAACAACCCCATG+GGG 0.703250 4_3:-40824988 None:intergenic
GAGGTGTCCATACAGAACTG+TGG 0.706292 4_3:-40825374 None:intergenic
ACCTCGACTAGCATCTGACG+GGG 0.708133 4_3:-40827792 None:intergenic
TCCAGACCAAGAAAACTAGG+TGG 0.713409 4_3:-40828953 None:intergenic
AAATAAATGGAAGTGAGTGA+GGG 0.715552 4_3:-40822060 None:intergenic
CTTTCAAGTGAAAGACACAC+CGG 0.728252 4_3:+40825207 Msa0641080:CDS
GCGCGATAATGTTAGCGAGG+GGG 0.730545 4_3:+40826529 Msa0641080:CDS
TTTCAACTGGATACTCTAAG+CGG 0.739997 4_3:+40826729 Msa0641080:CDS
TGATAAGCTGAAACAGACTG+GGG 0.763764 4_3:+40827065 Msa0641080:CDS
GGAGGTCAAAACAAGCCCTG+CGG 0.765540 4_3:+40826574 Msa0641080:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTTAATTAAAACAAAAAA+AGG - chr4_3:40823232-40823251 None:intergenic 10.0%
!!! TACTATTATTTTAAAATTTC+TGG - chr4_3:40823613-40823632 None:intergenic 10.0%
!! AATAATAAAAGATAAAACAA+AGG - chr4_3:40823969-40823988 None:intergenic 10.0%
!!! TGAAAATTTGAGATTAAAAA+TGG + chr4_3:40822660-40822679 Msa0641080:exon 15.0%
!!! GAAAATTTGAGATTAAAAAT+GGG + chr4_3:40822661-40822680 Msa0641080:exon 15.0%
!!! AAAATTTGAGATTAAAAATG+GGG + chr4_3:40822662-40822681 Msa0641080:exon 15.0%
!!! TTAAATTTTGAGAAATTTAG+TGG + chr4_3:40822955-40822974 Msa0641080:intron 15.0%
!!! TAAATTTTGAGAAATTTAGT+GGG + chr4_3:40822956-40822975 Msa0641080:intron 15.0%
!!! CTTTGTTTTAAAGATTTATT+GGG + chr4_3:40822989-40823008 Msa0641080:intron 15.0%
!!! AATAATAAATTTTCTGTATG+TGG + chr4_3:40824632-40824651 Msa0641080:intron 15.0%
!! TAATAATTCTTGTTAGATAA+TGG + chr4_3:40825092-40825111 Msa0641080:intron 15.0%
!!! TAATAAAAAATACCAACTTT+TGG + chr4_3:40827220-40827239 Msa0641080:intron 15.0%
!! AGAAAATTCAATTATTTGAT+TGG - chr4_3:40827262-40827281 None:intergenic 15.0%
!! TAAAAAAAAAAAAGGTAGAT+TGG - chr4_3:40827337-40827356 None:intergenic 15.0%
!! CAGATAAAATATATTATTAG+AGG - chr4_3:40827858-40827877 None:intergenic 15.0%
!!! TTTTGAAGGAATATTACAAA+GGG - chr4_3:40822020-40822039 None:intergenic 20.0%
!! AAAAATGGATAAACACAAAA+GGG - chr4_3:40822221-40822240 None:intergenic 20.0%
!! AAAAAATGGATAAACACAAA+AGG - chr4_3:40822222-40822241 None:intergenic 20.0%
!!! AAAAAGGGTATATCAAAAAA+TGG - chr4_3:40822236-40822255 None:intergenic 20.0%
!! AAAAATGGTTAACAGAAAAA+GGG - chr4_3:40822251-40822270 None:intergenic 20.0%
!! AAAAAATGGTTAACAGAAAA+AGG - chr4_3:40822252-40822271 None:intergenic 20.0%
!!! ACCATTTTTTTCATCTAAAA+TGG + chr4_3:40822262-40822281 Msa0641080:five_prime_UTR 20.0%
!!! TCCATTTTAGATGAAAAAAA+TGG - chr4_3:40822266-40822285 None:intergenic 20.0%
!!! AAAGTAAGTAGTTTTTTTGA+AGG + chr4_3:40822771-40822790 Msa0641080:intron 20.0%
!!! GTGATTATTTTCTTTTACTT+TGG + chr4_3:40822796-40822815 Msa0641080:intron 20.0%
!!! ATTTTGAGAAATTAATTCAG+TGG + chr4_3:40822819-40822838 Msa0641080:intron 20.0%
!!! TTTTGAGAAATTAATTCAGT+GGG + chr4_3:40822820-40822839 Msa0641080:intron 20.0%
!! GAAAAAAGTAGATTTGATTA+GGG + chr4_3:40822842-40822861 Msa0641080:intron 20.0%
!!! ATTTTGGATTTTGAGAAATT+TGG + chr4_3:40822895-40822914 Msa0641080:intron 20.0%
!!! GCTTTGTTTTAAAGATTTAT+TGG + chr4_3:40822988-40823007 Msa0641080:intron 20.0%
!!! TTTTAAAGATTTATTGGGTT+TGG + chr4_3:40822994-40823013 Msa0641080:intron 20.0%
!! ATATAAAAAAGTTCCAAAAC+AGG - chr4_3:40823167-40823186 None:intergenic 20.0%
!! CTTTATGTTCTTATTGTTAT+TGG + chr4_3:40823772-40823791 Msa0641080:intron 20.0%
!! TAGTTAACTCAAATACAAAT+AGG - chr4_3:40824076-40824095 None:intergenic 20.0%
!! TTAACATTTATCTAATGTCA+CGG + chr4_3:40824583-40824602 Msa0641080:intron 20.0%
!! TTATTAAGAAACAACGAAAA+CGG - chr4_3:40824659-40824678 None:intergenic 20.0%
!! TGCAAACAAAAATATAATGT+CGG - chr4_3:40824943-40824962 None:intergenic 20.0%
!! CAAGAATTATTAGAGAAATT+TGG - chr4_3:40825084-40825103 None:intergenic 20.0%
!!! ATAATAAATTTTACCTCCAT+CGG - chr4_3:40825700-40825719 None:intergenic 20.0%
!!! GGATGAATAATAATCTTTTA+AGG + chr4_3:40825772-40825791 Msa0641080:CDS 20.0%
!!! TTTTTGTTTTCCAGAAAAAT+CGG - chr4_3:40825847-40825866 None:intergenic 20.0%
!!! ATGAAAACAAATTTTGAACA+TGG + chr4_3:40826131-40826150 Msa0641080:CDS 20.0%
!! AATAAATGTAGAATGAGATA+AGG - chr4_3:40826906-40826925 None:intergenic 20.0%
!!! TCATTTTCATTGGTATTTAT+TGG + chr4_3:40827166-40827185 Msa0641080:intron 20.0%
!! CATAAAGAATGTAGATATAT+AGG - chr4_3:40827200-40827219 None:intergenic 20.0%
!! AAAAATAATACACCAAAAGT+TGG - chr4_3:40827235-40827254 None:intergenic 20.0%
!!! TTTTCTCTTTGATTAGATAA+AGG - chr4_3:40827382-40827401 None:intergenic 20.0%
!!! AACCGTTTTTATAATGTATT+TGG + chr4_3:40827504-40827523 Msa0641080:intron 20.0%
!! GTCCAAATACATTATAAAAA+CGG - chr4_3:40827509-40827528 None:intergenic 20.0%
!! AAAAAGAAGAATAATTGCAT+AGG - chr4_3:40829258-40829277 None:intergenic 20.0%
!!! TTATAAATATTAGCTTTGTG+TGG + chr4_3:40829332-40829351 Msa0641080:three_prime_UTR 20.0%
!!! GTTTTGAAGGAATATTACAA+AGG - chr4_3:40822021-40822040 None:intergenic 25.0%
! GATGTGAAACTGAAAATAAA+TGG - chr4_3:40822076-40822095 None:intergenic 25.0%
! AGAACTAAGAATGAACAAAA+GGG - chr4_3:40822606-40822625 None:intergenic 25.0%
! GGAAAAAAGTAGATTTGATT+AGG + chr4_3:40822841-40822860 Msa0641080:intron 25.0%
!! GGAAGTAAATTTTTGCTTAA+TGG + chr4_3:40822863-40822882 Msa0641080:intron 25.0%
!!! TTAATGGTGTTCTTTGATTT+TGG + chr4_3:40822879-40822898 Msa0641080:intron 25.0%
!!! AGATTTAGATTCTATTTCTG+TGG + chr4_3:40823105-40823124 Msa0641080:intron 25.0%
!!! ATATGTGTTTTTGTTGTTTC+TGG + chr4_3:40823183-40823202 Msa0641080:intron 25.0%
! ACATAACTAAATTACATGCA+AGG - chr4_3:40823483-40823502 None:intergenic 25.0%
!! TTCTTATTGTTATTGGTGTA+TGG + chr4_3:40823779-40823798 Msa0641080:intron 25.0%
!! TCTTATTGTTATTGGTGTAT+GGG + chr4_3:40823780-40823799 Msa0641080:intron 25.0%
! TTATAGCTTATGTATGAGAA+TGG + chr4_3:40823937-40823956 Msa0641080:intron 25.0%
!! CTCATTGATTAACAAAATGA+TGG + chr4_3:40824268-40824287 Msa0641080:CDS 25.0%
! AATCTCAATAAATGAGGAAA+AGG - chr4_3:40824345-40824364 None:intergenic 25.0%
! GTGACATTAGATAAATGTTA+AGG - chr4_3:40824584-40824603 None:intergenic 25.0%
! AAATATGAATGTTATTGCCA+CGG + chr4_3:40824679-40824698 Msa0641080:intron 25.0%
! AAATATAATGTCGGATAACT+TGG - chr4_3:40824934-40824953 None:intergenic 25.0%
! GAACAATTAGAAAAACTTAC+CGG - chr4_3:40825024-40825043 None:intergenic 25.0%
!!! TGTTAGATAATGGAGAATAT+CGG + chr4_3:40825102-40825121 Msa0641080:intron 25.0%
! AAGAACTTGATCTTTCAATT+GGG + chr4_3:40825141-40825160 Msa0641080:CDS 25.0%
!!! AAATATCTGGTTTAGGTTTT+GGG - chr4_3:40825403-40825422 None:intergenic 25.0%
!!! TTGATGATGGATTCATATTA+GGG - chr4_3:40825650-40825669 None:intergenic 25.0%
!!! TTTTCTGGAAAACAAAAAGT+AGG + chr4_3:40825849-40825868 Msa0641080:CDS 25.0%
!! TTTCTGGAAAACAAAAAGTA+GGG + chr4_3:40825850-40825869 Msa0641080:CDS 25.0%
!!! AATTTGTTTTCATCATGTGT+TGG - chr4_3:40826124-40826143 None:intergenic 25.0%
! TTAAATGCCTAACAAAACAA+GGG - chr4_3:40827123-40827142 None:intergenic 25.0%
! ATTAAATGCCTAACAAAACA+AGG - chr4_3:40827124-40827143 None:intergenic 25.0%
! AAGAATGTTATACCAAAAGT+TGG - chr4_3:40827309-40827328 None:intergenic 25.0%
! ATCTAATCAAAGAGAAAAGA+AGG + chr4_3:40827384-40827403 Msa0641080:intron 25.0%
! GAAAAATAAAGATCAGTTAG+CGG - chr4_3:40827641-40827660 None:intergenic 25.0%
! TTGTTAAAAGATAACTTCGA+GGG + chr4_3:40827696-40827715 Msa0641080:CDS 25.0%
! TGTACAAGATTATAGAGAAT+TGG - chr4_3:40827827-40827846 None:intergenic 25.0%
! GTATTAAACAAGTAGTTGAT+TGG + chr4_3:40828041-40828060 Msa0641080:intron 25.0%
! AACAAAGTCTATGTTTAGAT+TGG - chr4_3:40828273-40828292 None:intergenic 25.0%
!! ATTTAAAATGATGACCGAAT+AGG - chr4_3:40828724-40828743 None:intergenic 25.0%
! TTTCTTTCCTGTAATTTGAT+TGG + chr4_3:40829156-40829175 Msa0641080:three_prime_UTR 25.0%
! TTCAGATGTATAGATATTGT+AGG + chr4_3:40829195-40829214 Msa0641080:three_prime_UTR 25.0%
! TATTGTAGGATTTAGACATA+AGG + chr4_3:40829209-40829228 Msa0641080:three_prime_UTR 25.0%
! ATTGTAGGATTTAGACATAA+GGG + chr4_3:40829210-40829229 Msa0641080:three_prime_UTR 25.0%
AAATAAATGGAAGTGAGTGA+GGG - chr4_3:40822063-40822082 None:intergenic 30.0%
AAAATAAATGGAAGTGAGTG+AGG - chr4_3:40822064-40822083 None:intergenic 30.0%
AACAGAACATGTTTCTTCTT+TGG + chr4_3:40822568-40822587 Msa0641080:five_prime_UTR 30.0%
CAGAACTAAGAATGAACAAA+AGG - chr4_3:40822607-40822626 None:intergenic 30.0%
!!! TTTCACTTTTTCCAAACCAA+TGG - chr4_3:40822645-40822664 None:intergenic 30.0%
!!! AATGGTCTTATGCTGTTTTT+TGG + chr4_3:40822728-40822747 Msa0641080:CDS 30.0%
!!! TATGCTGTTTTTTGGAAGAT+CGG + chr4_3:40822736-40822755 Msa0641080:CDS 30.0%
!! TTGGATTTTGAGAAATTTGG+TGG + chr4_3:40822898-40822917 Msa0641080:intron 30.0%
! AATGTTGTTGGTGTTTGATT+TGG + chr4_3:40823020-40823039 Msa0641080:intron 30.0%
!!! GTGTTTGATTTGGACTTTTT+TGG + chr4_3:40823030-40823049 Msa0641080:intron 30.0%
!! TTAGATTCTATTTCTGTGGT+TGG + chr4_3:40823109-40823128 Msa0641080:intron 30.0%
GTAAGATGCACTTTCTATTT+AGG + chr4_3:40823274-40823293 Msa0641080:intron 30.0%
!! TTAGCTTGTTTGAATCTGTT+TGG + chr4_3:40823337-40823356 Msa0641080:intron 30.0%
! AGAGCATCATAAGTGATTAA+TGG - chr4_3:40823418-40823437 None:intergenic 30.0%
TAATTTACCTTACCAAGACA+GGG + chr4_3:40824187-40824206 Msa0641080:CDS 30.0%
AATAATTCTGTCAATGTTGC+TGG + chr4_3:40824293-40824312 Msa0641080:CDS 30.0%
TTCCTCATTTATTGAGATTC+AGG + chr4_3:40824346-40824365 Msa0641080:intron 30.0%
ATCCTGAATCTCAATAAATG+AGG - chr4_3:40824351-40824370 None:intergenic 30.0%
ATTTCATTCACATATTACCG+TGG - chr4_3:40824699-40824718 None:intergenic 30.0%
ACGGTAATATGTGAATGAAA+TGG + chr4_3:40824698-40824717 Msa0641080:intron 30.0%
! TCTCTATTTTGTGTACCTTT+AGG + chr4_3:40824808-40824827 Msa0641080:intron 30.0%
!! ATATTTTTGTTTGCAGACAG+TGG + chr4_3:40824948-40824967 Msa0641080:intron 30.0%
AACAAGAATTATCAGAGACA+AGG - chr4_3:40825052-40825071 None:intergenic 30.0%
TGTCTCTGATAATTCTTGTT+AGG + chr4_3:40825052-40825071 Msa0641080:intron 30.0%
GTCTCTGATAATTCTTGTTA+GGG + chr4_3:40825053-40825072 Msa0641080:intron 30.0%
GAAGAACTTGATCTTTCAAT+TGG + chr4_3:40825140-40825159 Msa0641080:CDS 30.0%
!! AAGTCTTGTTGAATAGTCTT+CGG - chr4_3:40825190-40825209 None:intergenic 30.0%
TTAGATCCATTAGCTACTAA+GGG - chr4_3:40825294-40825313 None:intergenic 30.0%
!! CAAATATCTGGTTTAGGTTT+TGG - chr4_3:40825404-40825423 None:intergenic 30.0%
ACAAGAGAATACAATTGTGA+AGG + chr4_3:40825449-40825468 Msa0641080:CDS 30.0%
! TTAACTGATTCCAATCTGAA+TGG + chr4_3:40825561-40825580 Msa0641080:CDS 30.0%
!!! TGGTTTTGGTCTTAAACAAA+TGG + chr4_3:40825581-40825600 Msa0641080:CDS 30.0%
!!! AACAAGTCTTTTCAGGTATT+GGG + chr4_3:40825607-40825626 Msa0641080:CDS 30.0%
!! CTTGATGATGGATTCATATT+AGG - chr4_3:40825651-40825670 None:intergenic 30.0%
ATATTGAAGACACTTGATGA+TGG - chr4_3:40825663-40825682 None:intergenic 30.0%
TTCAAAATGAAACTGCTGAA+TGG + chr4_3:40826215-40826234 Msa0641080:CDS 30.0%
TGCAGAAAAACTGGATAAAA+AGG + chr4_3:40826277-40826296 Msa0641080:CDS 30.0%
CATTTCATCAGAATTCTGAT+TGG - chr4_3:40826441-40826460 None:intergenic 30.0%
ATTCTGATGAAATGTCATGT+AGG + chr4_3:40826447-40826466 Msa0641080:CDS 30.0%
!!! ATTGTTTGGTTTTCCCAAAA+CGG + chr4_3:40826553-40826572 Msa0641080:CDS 30.0%
GAAACAAGTTCTATTAGATC+TGG + chr4_3:40826596-40826615 Msa0641080:CDS 30.0%
! ACTAAGTTGAGAACCATATA+TGG - chr4_3:40826663-40826682 None:intergenic 30.0%
!! TTTGATTTGGAAACTTCTTC+TGG - chr4_3:40826755-40826774 None:intergenic 30.0%
! AAAGGTATATACCTCTTTGT+TGG + chr4_3:40826880-40826899 Msa0641080:intron 30.0%
! CAAGAAAAGCATATGTTTGA+TGG - chr4_3:40827025-40827044 None:intergenic 30.0%
AAAACTCGTCACATCAAAAT+GGG - chr4_3:40827147-40827166 None:intergenic 30.0%
! TGACGAGTTTTCATTTTCAT+TGG + chr4_3:40827156-40827175 Msa0641080:intron 30.0%
TCTATGCATCATATATATGC+AGG + chr4_3:40827279-40827298 Msa0641080:intron 30.0%
CTATGCATCATATATATGCA+GGG + chr4_3:40827280-40827299 Msa0641080:intron 30.0%
ACTAGCTAAACTCTTCATAT+AGG + chr4_3:40827542-40827561 Msa0641080:intron 30.0%
GTTGTTAAAAGATAACTTCG+AGG + chr4_3:40827695-40827714 Msa0641080:CDS 30.0%
TAAGATCCTCAACAATGATA+GGG - chr4_3:40827767-40827786 None:intergenic 30.0%
TTAAGATCCTCAACAATGAT+AGG - chr4_3:40827768-40827787 None:intergenic 30.0%
TTATGGTAAAAGCTACACTT+TGG - chr4_3:40828208-40828227 None:intergenic 30.0%
CTGACAATGTGTTTATAAGT+GGG + chr4_3:40828321-40828340 Msa0641080:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG + chr4_3:40828322-40828341 Msa0641080:intron 30.0%
CTGACAATGTGTTTATAAGT+GGG + chr4_3:40828321-40828340 Msa0641080:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG + chr4_3:40828322-40828341 Msa0641080:intron 30.0%
TATTGCCAAGTAAAAAACCA+TGG + chr4_3:40828653-40828672 Msa0641080:intron 30.0%
TCTGAATACTTCATCCTATT+CGG + chr4_3:40828707-40828726 Msa0641080:intron 30.0%
TGCAAAAATTAGAAGTGAAC+GGG - chr4_3:40828799-40828818 None:intergenic 30.0%
CTGCAAAAATTAGAAGTGAA+CGG - chr4_3:40828800-40828819 None:intergenic 30.0%
! TCTAATTTTTGCAGGCAAAT+AGG + chr4_3:40828806-40828825 Msa0641080:intron 30.0%
! CTAATTTTTGCAGGCAAATA+GGG + chr4_3:40828807-40828826 Msa0641080:intron 30.0%
TAAACCATCATGTTATCAAC+TGG - chr4_3:40828916-40828935 None:intergenic 30.0%
ACTAGATTTGATGTCAATCA+TGG - chr4_3:40829002-40829021 None:intergenic 30.0%
!! ATCTAGTCTTATTAGACTTC+AGG + chr4_3:40829015-40829034 Msa0641080:three_prime_UTR 30.0%
TTGTAGGATTTAGACATAAG+GGG + chr4_3:40829211-40829230 Msa0641080:three_prime_UTR 30.0%
!!! TTTGACCTTTTTTCCTTTCT+TGG + chr4_3:40829275-40829294 Msa0641080:three_prime_UTR 30.0%
!!! AGAGAAGAGAATGGTTTTGT+CGG - chr4_3:40821970-40821989 None:intergenic 35.0%
TTAACAACCTTGAATCTCGT+GGG + chr4_3:40822300-40822319 Msa0641080:five_prime_UTR 35.0%
!! GAATGCTACTTTGATTCCAT+TGG + chr4_3:40822626-40822645 Msa0641080:five_prime_UTR 35.0%
! CTACTTTGATTCCATTGGTT+TGG + chr4_3:40822631-40822650 Msa0641080:five_prime_UTR 35.0%
TGGGTTTGGATAAATGTTGT+TGG + chr4_3:40823008-40823027 Msa0641080:intron 35.0%
!!! GACTTTTTTGGAAGCAAAAG+TGG + chr4_3:40823042-40823061 Msa0641080:intron 35.0%
CCAAAACAGGAACAAAAATG+TGG - chr4_3:40823154-40823173 None:intergenic 35.0%
! CCACATTTTTGTTCCTGTTT+TGG + chr4_3:40823151-40823170 Msa0641080:intron 35.0%
GTTATGTCTCTGAATCAATC+AGG + chr4_3:40823496-40823515 Msa0641080:intron 35.0%
ATGACCAATCTCCAATCATA+TGG - chr4_3:40823736-40823755 None:intergenic 35.0%
! CTAAGTATGTTTGACTTTGC+AGG + chr4_3:40824093-40824112 Msa0641080:intron 35.0%
CTAATTTACCTTACCAAGAC+AGG + chr4_3:40824186-40824205 Msa0641080:CDS 35.0%
TTGAATCCTTAGCTGAGAAT+CGG - chr4_3:40824231-40824250 None:intergenic 35.0%
! TTGCTGTTATGTAGGATACT+TGG + chr4_3:40824423-40824442 Msa0641080:intron 35.0%
TGTTATGTAGGATACTTGGA+CGG + chr4_3:40824427-40824446 Msa0641080:intron 35.0%
TAAAGATGTATATCCACCAG+AGG + chr4_3:40824497-40824516 Msa0641080:CDS 35.0%
GTACCTTTAGGTGTTAAATG+AGG + chr4_3:40824820-40824839 Msa0641080:intron 35.0%
TGAATAGTCTTCGGATAGAA+GGG - chr4_3:40825181-40825200 None:intergenic 35.0%
TTGAATAGTCTTCGGATAGA+AGG - chr4_3:40825182-40825201 None:intergenic 35.0%
GTTAGATCCATTAGCTACTA+AGG - chr4_3:40825295-40825314 None:intergenic 35.0%
TATGCAACGAATTACTTGGT+TGG - chr4_3:40825317-40825336 None:intergenic 35.0%
! TTTATTTCTCCCCTTAGAAC+AGG - chr4_3:40825348-40825367 None:intergenic 35.0%
ATAGTTACCACAGTTCTGTA+TGG + chr4_3:40825367-40825386 Msa0641080:CDS 35.0%
! GGCTATCAAATATCTGGTTT+AGG - chr4_3:40825410-40825429 None:intergenic 35.0%
! GTATTCTCTTGTTGAGCTTT+TGG - chr4_3:40825441-40825460 None:intergenic 35.0%
! GATTCCAATCTGAATGGTTT+TGG + chr4_3:40825567-40825586 Msa0641080:CDS 35.0%
AAGACCAAAACCATTCAGAT+TGG - chr4_3:40825574-40825593 None:intergenic 35.0%
!!! CAACAAGTCTTTTCAGGTAT+TGG + chr4_3:40825606-40825625 Msa0641080:CDS 35.0%
!!! ATTTTACCTCCATCGGTTTT+CGG - chr4_3:40825693-40825712 None:intergenic 35.0%
TCTAACAACACTTCACTTCT+TGG + chr4_3:40825726-40825745 Msa0641080:CDS 35.0%
GAATCCCAATTTGTAGTAGT+GGG + chr4_3:40825751-40825770 Msa0641080:CDS 35.0%
TCATCCCACTACTACAAATT+GGG - chr4_3:40825758-40825777 None:intergenic 35.0%
TTCATCCCACTACTACAAAT+TGG - chr4_3:40825759-40825778 None:intergenic 35.0%
AAAATCGGCAGTGGATAATT+CGG - chr4_3:40825832-40825851 None:intergenic 35.0%
GGAAAACAAAAAGTAGGGTT+TGG + chr4_3:40825855-40825874 Msa0641080:CDS 35.0%
! TGATCATGCTTTAAGTCAAC+TGG - chr4_3:40825951-40825970 None:intergenic 35.0%
GACTTAAAGCATGATCAAGA+TGG + chr4_3:40825954-40825973 Msa0641080:CDS 35.0%
AAAGCATGATCAAGATGGTT+TGG + chr4_3:40825959-40825978 Msa0641080:CDS 35.0%
!! AAGGATAGATGATTTGCTTC+AGG + chr4_3:40825995-40826014 Msa0641080:CDS 35.0%
!! AGGATAGATGATTTGCTTCA+GGG + chr4_3:40825996-40826015 Msa0641080:CDS 35.0%
GGTTAGTAACATCTTTATCG+AGG - chr4_3:40826103-40826122 None:intergenic 35.0%
ATCTTGTACGCAACTTTCAT+CGG + chr4_3:40826157-40826176 Msa0641080:CDS 35.0%
!! TGATGACTTGTTTGATGTCT+TGG + chr4_3:40826184-40826203 Msa0641080:CDS 35.0%
!! GATGACTTGTTTGATGTCTT+GGG + chr4_3:40826185-40826204 Msa0641080:CDS 35.0%
TACGTTGTTTGCAGATGAAT+TGG + chr4_3:40826247-40826266 Msa0641080:CDS 35.0%
TTGTTTGCAGATGAATTGGA+TGG + chr4_3:40826251-40826270 Msa0641080:CDS 35.0%
CCTGATATTGCTTCATTAAC+AGG - chr4_3:40826347-40826366 None:intergenic 35.0%
CCTGTTAATGAAGCAATATC+AGG + chr4_3:40826344-40826363 Msa0641080:CDS 35.0%
AATGAAGCAATATCAGGCAA+TGG + chr4_3:40826350-40826369 Msa0641080:CDS 35.0%
TGTACTAATCCTTGTTACTG+TGG - chr4_3:40826474-40826493 None:intergenic 35.0%
! TAATAGAACTTGTTTCCGCA+GGG - chr4_3:40826592-40826611 None:intergenic 35.0%
TCTCAAACCACTTCCATATA+TGG + chr4_3:40826647-40826666 Msa0641080:CDS 35.0%
TTGAGAACCATATATGGAAG+TGG - chr4_3:40826657-40826676 None:intergenic 35.0%
ATGGTTCTCAACTTAGTTCA+TGG + chr4_3:40826666-40826685 Msa0641080:CDS 35.0%
TGGTTCTCAACTTAGTTCAT+GGG + chr4_3:40826667-40826686 Msa0641080:CDS 35.0%
TTTCAACTGGATACTCTAAG+CGG + chr4_3:40826729-40826748 Msa0641080:CDS 35.0%
TTTCCAAATCAAACCGTAAG+AGG + chr4_3:40826762-40826781 Msa0641080:CDS 35.0%
TGAATCATTTGGCGATCTTT+GGG - chr4_3:40826818-40826837 None:intergenic 35.0%
TTGAATCATTTGGCGATCTT+TGG - chr4_3:40826819-40826838 None:intergenic 35.0%
TTACGTGAAATTGTGCCTAA+TGG + chr4_3:40826854-40826873 Msa0641080:CDS 35.0%
GTATATACCTTTGCTCCATT+AGG - chr4_3:40826872-40826891 None:intergenic 35.0%
!!! TGCAATTCCCTTGTTTTGTT+AGG + chr4_3:40827113-40827132 Msa0641080:intron 35.0%
GAAAACTCGTCACATCAAAA+TGG - chr4_3:40827148-40827167 None:intergenic 35.0%
TTCAAGAAAGTTACCATCTG+CGG + chr4_3:40827614-40827633 Msa0641080:intron 35.0%
GTGCAGATTGTTAGTAAAGA+AGG + chr4_3:40827666-40827685 Msa0641080:intron 35.0%
CAGATTGTTAGTAAAGAAGG+TGG + chr4_3:40827669-40827688 Msa0641080:intron 35.0%
TTAAAAGATAACTTCGAGGG+AGG + chr4_3:40827699-40827718 Msa0641080:CDS 35.0%
TAAAAGATAACTTCGAGGGA+GGG + chr4_3:40827700-40827719 Msa0641080:CDS 35.0%
TTAGGGTTAACCATCTTGAA+AGG + chr4_3:40827969-40827988 Msa0641080:CDS 35.0%
TAGGGTTAACCATCTTGAAA+GGG + chr4_3:40827970-40827989 Msa0641080:CDS 35.0%
AGTCTATGTTTAGATTGGCA+AGG - chr4_3:40828268-40828287 None:intergenic 35.0%
CTTTGTTAAGAGTCACACAT+CGG + chr4_3:40828286-40828305 Msa0641080:intron 35.0%
CCACTTATAAACACATTGTC+AGG - chr4_3:40828323-40828342 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG + chr4_3:40828320-40828339 Msa0641080:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG + chr4_3:40828323-40828342 Msa0641080:intron 35.0%
TGATACCATCTTAGAAATCG+TGG - chr4_3:40828396-40828415 None:intergenic 35.0%
CCACTTATAAACACATTGTC+AGG - chr4_3:40828323-40828342 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG + chr4_3:40828320-40828339 Msa0641080:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG + chr4_3:40828323-40828342 Msa0641080:intron 35.0%
CTAACATAATCCCACAAAAC+CGG - chr4_3:40828602-40828621 None:intergenic 35.0%
GTTAAGTCTCTTAGAAATCG+TGG - chr4_3:40828631-40828650 None:intergenic 35.0%
!!! TACAGCCATGGTTTTTTACT+TGG - chr4_3:40828661-40828680 None:intergenic 35.0%
AACCATGGCTGTAAATATTG+TGG + chr4_3:40828668-40828687 Msa0641080:intron 35.0%
! CGTTCACTTCTAATTTTTGC+AGG + chr4_3:40828798-40828817 Msa0641080:intron 35.0%
AAATAGGGATGTAACAAGGA+TGG + chr4_3:40828822-40828841 Msa0641080:CDS 35.0%
!! AAGAAAACTAGGTGGATTGT+GGG - chr4_3:40828948-40828967 None:intergenic 35.0%
CAACACACCAATCAAATTAC+AGG - chr4_3:40829166-40829185 None:intergenic 35.0%
CTGTAATTTGATTGGTGTGT+TGG + chr4_3:40829164-40829183 Msa0641080:three_prime_UTR 35.0%
TGTAGGATTTAGACATAAGG+GGG + chr4_3:40829212-40829231 Msa0641080:three_prime_UTR 35.0%
AGAATAATTGCATAGGCTGA+TGG - chr4_3:40829251-40829270 None:intergenic 35.0%
CTACTCCAAGAAAGGAAAAA+AGG - chr4_3:40829283-40829302 None:intergenic 35.0%
AAAGATCACTACTCCAAGAA+AGG - chr4_3:40829291-40829310 None:intergenic 35.0%
CAACAGAAAACACGATAACA+AGG - chr4_3:40829399-40829418 None:intergenic 35.0%
!! CTTGTTATCGTGTTTTCTGT+TGG + chr4_3:40829397-40829416 Msa0641080:three_prime_UTR 35.0%
TTTGTCGGATTGTGAAGCTT+TGG - chr4_3:40821955-40821974 None:intergenic 40.0%
ATTGGGAGAAGAGAAGAGAA+TGG - chr4_3:40821979-40821998 None:intergenic 40.0%
!! AGAAAAGGGAAGGGTTTTGA+AGG - chr4_3:40822034-40822053 None:intergenic 40.0%
AGTGAGGGTTGTTGAGAAAA+GGG - chr4_3:40822048-40822067 None:intergenic 40.0%
CGAGATTCAAGGTTGTTAAG+AGG - chr4_3:40822299-40822318 None:intergenic 40.0%
CTTAACAACCTTGAATCTCG+TGG + chr4_3:40822299-40822318 Msa0641080:five_prime_UTR 40.0%
TTCTCTCTCTCTCTCTATAC+CGG + chr4_3:40822415-40822434 Msa0641080:five_prime_UTR 40.0%
CTATTGTCAGTTTCTTGCAC+CGG - chr4_3:40822452-40822471 None:intergenic 40.0%
GATCCAGAGAGAAAAAGAAG+TGG + chr4_3:40822480-40822499 Msa0641080:five_prime_UTR 40.0%
GAAAAAGAAGTGGTGGTTTG+AGG + chr4_3:40822490-40822509 Msa0641080:five_prime_UTR 40.0%
GTTTGAGGACAAAACAAGCA+GGG + chr4_3:40822505-40822524 Msa0641080:five_prime_UTR 40.0%
! TGTCGTGGTAGTTAGTTTCT+AGG + chr4_3:40822537-40822556 Msa0641080:five_prime_UTR 40.0%
! CTTTGAAGACTCTTTGTGCT+AGG + chr4_3:40822701-40822720 Msa0641080:CDS 40.0%
CTCTTTGTGCTAGGAATCAA+TGG + chr4_3:40822710-40822729 Msa0641080:CDS 40.0%
AAGCTGAGCATTTCTACTAG+TGG - chr4_3:40823378-40823397 None:intergenic 40.0%
TCTCTGAATCAATCAGGAGA+TGG + chr4_3:40823502-40823521 Msa0641080:intron 40.0%
TCAATCAGGAGATGGAATCA+AGG + chr4_3:40823510-40823529 Msa0641080:intron 40.0%
ACTCCAAACAGCCATATGAT+TGG + chr4_3:40823722-40823741 Msa0641080:intron 40.0%
TCTCCAATCATATGGCTGTT+TGG - chr4_3:40823728-40823747 None:intergenic 40.0%
ACAGCCATATGATTGGAGAT+TGG + chr4_3:40823729-40823748 Msa0641080:intron 40.0%
ACTTTGCAGGCTGTTAATCT+GGG + chr4_3:40824106-40824125 Msa0641080:intron 40.0%
! TTTTGCGGAAGGAAAGTTGA+CGG - chr4_3:40824155-40824174 None:intergenic 40.0%
! TTAGACGTTCCAACGTTTTG+CGG - chr4_3:40824170-40824189 None:intergenic 40.0%
TTCTCAGCTAAGGATTCAAG+AGG + chr4_3:40824232-40824251 Msa0641080:CDS 40.0%
GTTATGTAGGATACTTGGAC+GGG + chr4_3:40824428-40824447 Msa0641080:intron 40.0%
CTGATGATTTCCTGTGAATG+CGG - chr4_3:40824454-40824473 None:intergenic 40.0%
CATTCACAGGAAATCATCAG+TGG + chr4_3:40824454-40824473 Msa0641080:CDS 40.0%
ATGTATATCCACCAGAGGTA+TGG + chr4_3:40824502-40824521 Msa0641080:intron 40.0%
TCATCAAAACTCCATACCTC+TGG - chr4_3:40824516-40824535 None:intergenic 40.0%
GCACCTCATTTAACACCTAA+AGG - chr4_3:40824826-40824845 None:intergenic 40.0%
AATGTCGGATAACTTGGATC+AGG - chr4_3:40824928-40824947 None:intergenic 40.0%
!! TTTTTGTTTGCAGACAGTGG+TGG + chr4_3:40824951-40824970 Msa0641080:intron 40.0%
! TCAACTTGGTTCTTTCTTGC+CGG + chr4_3:40825002-40825021 Msa0641080:CDS 40.0%
TTTCAATTGGGACATGTTCC+CGG + chr4_3:40825153-40825172 Msa0641080:CDS 40.0%
! CTTTCAAGTGAAAGACACAC+CGG + chr4_3:40825207-40825226 Msa0641080:CDS 40.0%
AACAGAATCAGTCACAGATC+CGG - chr4_3:40825229-40825248 None:intergenic 40.0%
!! ACGTGTGGATTAGAAGATAC+AGG - chr4_3:40825252-40825271 None:intergenic 40.0%
GGACTATGCAACGAATTACT+TGG - chr4_3:40825321-40825340 None:intergenic 40.0%
ATAGTCCAATGCCTGTTCTA+AGG + chr4_3:40825334-40825353 Msa0641080:CDS 40.0%
TAGTCCAATGCCTGTTCTAA+GGG + chr4_3:40825335-40825354 Msa0641080:CDS 40.0%
!!! TGGTTTAGGTTTTGGGATTG+AGG - chr4_3:40825396-40825415 None:intergenic 40.0%
GGCAAAGGCTATCAAATATC+TGG - chr4_3:40825416-40825435 None:intergenic 40.0%
! TCTCTTGTTGAGCTTTTGGT+TGG - chr4_3:40825437-40825456 None:intergenic 40.0%
! ATGGAGCAACAAGTCTTTTC+AGG + chr4_3:40825600-40825619 Msa0641080:CDS 40.0%
!!! AAGTCTTTTCAGGTATTGGG+AGG + chr4_3:40825610-40825629 Msa0641080:CDS 40.0%
AACAACACTTCACTTCTTGG+AGG + chr4_3:40825729-40825748 Msa0641080:CDS 40.0%
GGAATCCCAATTTGTAGTAG+TGG + chr4_3:40825750-40825769 Msa0641080:CDS 40.0%
AAATCGGCAGTGGATAATTC+GGG - chr4_3:40825831-40825850 None:intergenic 40.0%
!!! TTATCCACTGCCGATTTTTC+TGG + chr4_3:40825834-40825853 Msa0641080:CDS 40.0%
! TTTTCCAGAAAAATCGGCAG+TGG - chr4_3:40825841-40825860 None:intergenic 40.0%
ATCATCTATCCTTTGATCCG+AGG - chr4_3:40825988-40826007 None:intergenic 40.0%
GGCAATCACGAAGAAAATCA+GGG - chr4_3:40826082-40826101 None:intergenic 40.0%
AGGCAATCACGAAGAAAATC+AGG - chr4_3:40826083-40826102 None:intergenic 40.0%
TCTTGTACGCAACTTTCATC+GGG + chr4_3:40826158-40826177 Msa0641080:CDS 40.0%
TGAAACTGCTGAATGGAAAC+TGG + chr4_3:40826222-40826241 Msa0641080:CDS 40.0%
! GGCAATGTCTACGAGTTTTT+CGG + chr4_3:40826298-40826317 Msa0641080:CDS 40.0%
!! TCTACGAGTTTTTCGGTAGT+AGG + chr4_3:40826305-40826324 Msa0641080:CDS 40.0%
!!! CTTGTTTTGACCTCCGTTTT+GGG - chr4_3:40826569-40826588 None:intergenic 40.0%
! CTAATAGAACTTGTTTCCGC+AGG - chr4_3:40826593-40826612 None:intergenic 40.0%
TTCTCAACTTAGTTCATGGG+TGG + chr4_3:40826670-40826689 Msa0641080:CDS 40.0%
CGTGAAAACAGTGTTTCAAC+TGG + chr4_3:40826716-40826735 Msa0641080:CDS 40.0%
AAGCCTCTTACGGTTTGATT+TGG - chr4_3:40826768-40826787 None:intergenic 40.0%
TCACGCGATCTTGAATCATT+TGG - chr4_3:40826829-40826848 None:intergenic 40.0%
AATTGTGCCTAATGGAGCAA+AGG + chr4_3:40826862-40826881 Msa0641080:CDS 40.0%
ATGAGATAAGGCCAACAAAG+AGG - chr4_3:40826894-40826913 None:intergenic 40.0%
CTGATAAGCTGAAACAGACT+GGG + chr4_3:40827064-40827083 Msa0641080:CDS 40.0%
TGATAAGCTGAAACAGACTG+GGG + chr4_3:40827065-40827084 Msa0641080:CDS 40.0%
! TATGCAGGGATACCAACTTT+TGG + chr4_3:40827294-40827313 Msa0641080:intron 40.0%
AAAAGATAACTTCGAGGGAG+GGG + chr4_3:40827701-40827720 Msa0641080:CDS 40.0%
ATTCTCACAGATGCTTTGTG+AGG + chr4_3:40827905-40827924 Msa0641080:intron 40.0%
! GAAATAGCCGACTTAATCAG+AGG + chr4_3:40827945-40827964 Msa0641080:CDS 40.0%
CCCTAATCCTCTGATTAAGT+CGG - chr4_3:40827955-40827974 None:intergenic 40.0%
CCGACTTAATCAGAGGATTA+GGG + chr4_3:40827952-40827971 Msa0641080:CDS 40.0%
AGGGTTAACCATCTTGAAAG+GGG + chr4_3:40827971-40827990 Msa0641080:CDS 40.0%
ACATATCCTTAGTGCGTGTT+TGG + chr4_3:40828132-40828151 Msa0641080:intron 40.0%
GTTTAGATTGGCAAGGAGTT+CGG - chr4_3:40828261-40828280 None:intergenic 40.0%
TTAAGAGTCACACATCGGAT+AGG + chr4_3:40828291-40828310 Msa0641080:intron 40.0%
!!! ACCTCACAAGCCATTTTTGT+GGG + chr4_3:40828354-40828373 Msa0641080:intron 40.0%
CTAACACAACCCCACAAAAA+TGG - chr4_3:40828367-40828386 None:intergenic 40.0%
! CATTTTTGTGGGGTTGTGTT+AGG + chr4_3:40828365-40828384 Msa0641080:intron 40.0%
CCATCTTAGAAATCGTGGTT+GGG - chr4_3:40828391-40828410 None:intergenic 40.0%
ACCATCTTAGAAATCGTGGT+TGG - chr4_3:40828392-40828411 None:intergenic 40.0%
TGTTATCAGGTTTCCGCTAT+CGG + chr4_3:40828444-40828463 Msa0641080:intron 40.0%
GTGTGTTAAGAGTCTCACAT+CGG + chr4_3:40828521-40828540 Msa0641080:intron 40.0%
TTAAGAGTCTCACATCGGAT+AGG + chr4_3:40828526-40828545 Msa0641080:intron 40.0%
!! CGGTTTTGTGGGATTATGTT+AGG + chr4_3:40828600-40828619 Msa0641080:intron 40.0%
GTCTCTTAGAAATCGTGGTT+GGG - chr4_3:40828626-40828645 None:intergenic 40.0%
AGTCTCTTAGAAATCGTGGT+TGG - chr4_3:40828627-40828646 None:intergenic 40.0%
CACCACAATATTTACAGCCA+TGG - chr4_3:40828673-40828692 None:intergenic 40.0%
AGGCAAATAGGGATGTAACA+AGG + chr4_3:40828818-40828837 Msa0641080:intron 40.0%
! CATGTCACTAGTTCGACTTT+TGG + chr4_3:40828852-40828871 Msa0641080:CDS 40.0%
!!! ACTTTTGGAGCAAACAGCAA+AGG + chr4_3:40828867-40828886 Msa0641080:CDS 40.0%
!!! CTTTTGGAGCAAACAGCAAA+GGG + chr4_3:40828868-40828887 Msa0641080:CDS 40.0%
!! TGCTCCAGTTGATAACATGA+TGG + chr4_3:40828909-40828928 Msa0641080:CDS 40.0%
!! CAAGAAAACTAGGTGGATTG+TGG - chr4_3:40828949-40828968 None:intergenic 40.0%
!! CACAATCCACCTAGTTTTCT+TGG + chr4_3:40828947-40828966 Msa0641080:exon 40.0%
CATTCCAGACCAAGAAAACT+AGG - chr4_3:40828959-40828978 None:intergenic 40.0%
CTATCTTGGCAAAGTACAGA+AGG - chr4_3:40829095-40829114 None:intergenic 40.0%
CCTAAAGCTTCAAGCTATCT+TGG - chr4_3:40829109-40829128 None:intergenic 40.0%
CCAAGATAGCTTGAAGCTTT+AGG + chr4_3:40829106-40829125 Msa0641080:three_prime_UTR 40.0%
GTAGGATTTAGACATAAGGG+GGG + chr4_3:40829213-40829232 Msa0641080:three_prime_UTR 40.0%
TTTAGACATAAGGGGGGTTA+AGG + chr4_3:40829219-40829238 Msa0641080:three_prime_UTR 40.0%
GGGTTGTTGAGAAAAGGGAA+GGG - chr4_3:40822043-40822062 None:intergenic 45.0%
AGGGTTGTTGAGAAAAGGGA+AGG - chr4_3:40822044-40822063 None:intergenic 45.0%
GAGTGAGGGTTGTTGAGAAA+AGG - chr4_3:40822049-40822068 None:intergenic 45.0%
ACACAATCCCACGAGATTCA+AGG - chr4_3:40822310-40822329 None:intergenic 45.0%
TATACCGGAGGATGGAATTC+CGG + chr4_3:40822430-40822449 Msa0641080:five_prime_UTR 45.0%
! CCACCACTTCTTTTTCTCTC+TGG - chr4_3:40822486-40822505 None:intergenic 45.0%
CCAGAGAGAAAAAGAAGTGG+TGG + chr4_3:40822483-40822502 Msa0641080:five_prime_UTR 45.0%
GGTTTGAGGACAAAACAAGC+AGG + chr4_3:40822504-40822523 Msa0641080:five_prime_UTR 45.0%
CAGGAGATGGAATCAAGGTT+TGG + chr4_3:40823515-40823534 Msa0641080:intron 45.0%
GACTTTGCAGGCTGTTAATC+TGG + chr4_3:40824105-40824124 Msa0641080:intron 45.0%
ACTTTCCTTCCGCAAAACGT+TGG + chr4_3:40824158-40824177 Msa0641080:CDS 45.0%
TTACCTTACCAAGACAGGGA+AGG + chr4_3:40824191-40824210 Msa0641080:CDS 45.0%
TACCTTACCAAGACAGGGAA+GGG + chr4_3:40824192-40824211 Msa0641080:CDS 45.0%
!! TTTCTGCCGATTCTCAGCTA+AGG + chr4_3:40824222-40824241 Msa0641080:CDS 45.0%
TCTGTCAATGTTGCTGGTCA+AGG + chr4_3:40824299-40824318 Msa0641080:CDS 45.0%
CTGTCAATGTTGCTGGTCAA+GGG + chr4_3:40824300-40824319 Msa0641080:CDS 45.0%
!! GCTGCTCTTTGCTGTTATGT+AGG + chr4_3:40824415-40824434 Msa0641080:intron 45.0%
TCAAAACTCCATACCTCTGG+TGG - chr4_3:40824513-40824532 None:intergenic 45.0%
! GTGCATTGCCAATTTTCAGC+TGG + chr4_3:40824842-40824861 Msa0641080:CDS 45.0%
CCTGCATTCCAGCTGAAAAT+TGG - chr4_3:40824853-40824872 None:intergenic 45.0%
! CCAATTTTCAGCTGGAATGC+AGG + chr4_3:40824850-40824869 Msa0641080:CDS 45.0%
TTATTCCTGTGCTTCCCCAT+GGG + chr4_3:40824974-40824993 Msa0641080:CDS 45.0%
! ACCAAGTTGAACAACCCCAT+GGG - chr4_3:40824992-40825011 None:intergenic 45.0%
! AACCAAGTTGAACAACCCCA+TGG - chr4_3:40824993-40825012 None:intergenic 45.0%
! CAGTTTGAGGTAATGACGTG+TGG - chr4_3:40825267-40825286 None:intergenic 45.0%
! AGTCCAATGCCTGTTCTAAG+GGG + chr4_3:40825336-40825355 Msa0641080:CDS 45.0%
!! GTTGAGCTTTTGGTTGGCAA+AGG - chr4_3:40825431-40825450 None:intergenic 45.0%
CATGAAGAATCAAGACTCGC+AGG - chr4_3:40825492-40825511 None:intergenic 45.0%
!!! TTTTCAGGTATTGGGAGGCA+AGG + chr4_3:40825615-40825634 Msa0641080:CDS 45.0%
ATGTCTCAACCGAAAACCGA+TGG + chr4_3:40825681-40825700 Msa0641080:CDS 45.0%
GCTAATCGCATGCATCTAGA+AGG + chr4_3:40825906-40825925 Msa0641080:CDS 45.0%
! TCAAGATGGTTTGGCTACCT+CGG + chr4_3:40825968-40825987 Msa0641080:CDS 45.0%
TCACGATAAAGAGACGGTGA+TGG - chr4_3:40826032-40826051 None:intergenic 45.0%
ATCACCGTCTCTTTATCGTG+AGG + chr4_3:40826031-40826050 Msa0641080:CDS 45.0%
TGCTCCTCACGATAAAGAGA+CGG - chr4_3:40826038-40826057 None:intergenic 45.0%
CTTGTTTGATGTCTTGGGCA+TGG + chr4_3:40826190-40826209 Msa0641080:CDS 45.0%
GGATGGCAATGCAGAAAAAC+TGG + chr4_3:40826268-40826287 Msa0641080:CDS 45.0%
GGTGATCAGTGTTTGTTCCT+GGG - chr4_3:40826382-40826401 None:intergenic 45.0%
AGGTGATCAGTGTTTGTTCC+TGG - chr4_3:40826383-40826402 None:intergenic 45.0%
TGATCACCTGTTAGATGCTG+TGG + chr4_3:40826394-40826413 Msa0641080:CDS 45.0%
CATGTAGGACCACAGTAACA+AGG + chr4_3:40826462-40826481 Msa0641080:CDS 45.0%
ATATGCATGCTGGTAGGAGA+AGG - chr4_3:40826506-40826525 None:intergenic 45.0%
CGCATAATATGCATGCTGGT+AGG - chr4_3:40826512-40826531 None:intergenic 45.0%
ATCGCGCATAATATGCATGC+TGG - chr4_3:40826516-40826535 None:intergenic 45.0%
TATGCGCGATAATGTTAGCG+AGG + chr4_3:40826526-40826545 Msa0641080:CDS 45.0%
ATGCGCGATAATGTTAGCGA+GGG + chr4_3:40826527-40826546 Msa0641080:CDS 45.0%
!!! GTTTGGTTTTCCCAAAACGG+AGG + chr4_3:40826556-40826575 Msa0641080:CDS 45.0%
!!! GCTTGTTTTGACCTCCGTTT+TGG - chr4_3:40826570-40826589 None:intergenic 45.0%
GGCTGCAGCAAAGATAATGT+TGG + chr4_3:40826617-40826636 Msa0641080:CDS 45.0%
AACCGTAAGAGGCTTAAACC+TGG + chr4_3:40826773-40826792 Msa0641080:CDS 45.0%
CTCCAGGTTTAAGCCTCTTA+CGG - chr4_3:40826778-40826797 None:intergenic 45.0%
TTAAACCTGGAGAGAACCCA+AGG + chr4_3:40826786-40826805 Msa0641080:CDS 45.0%
GCATAGACGCTCTTCTTGAA+AGG + chr4_3:40826998-40827017 Msa0641080:CDS 45.0%
GCTGATAAGCTGAAACAGAC+TGG + chr4_3:40827063-40827082 Msa0641080:CDS 45.0%
AACAGACGACGTCTTTACCT+TGG - chr4_3:40827094-40827113 None:intergenic 45.0%
! TGAGGTTGGCTCACAATCAA+TGG + chr4_3:40827737-40827756 Msa0641080:CDS 45.0%
GGTTTGCCCTATCATTGTTG+AGG + chr4_3:40827758-40827777 Msa0641080:CDS 45.0%
ACCTCTTTAACCTGCTTGCT+TGG + chr4_3:40827880-40827899 Msa0641080:intron 45.0%
ACCAAGCAAGCAGGTTAAAG+AGG - chr4_3:40827884-40827903 None:intergenic 45.0%
GTGAGAATAACCAAGCAAGC+AGG - chr4_3:40827893-40827912 None:intergenic 45.0%
CACAGATGCTTTGTGAGGAA+CGG + chr4_3:40827910-40827929 Msa0641080:intron 45.0%
ACAGATGCTTTGTGAGGAAC+GGG + chr4_3:40827911-40827930 Msa0641080:intron 45.0%
! GCCGACTTAATCAGAGGATT+AGG + chr4_3:40827951-40827970 Msa0641080:CDS 45.0%
AACCATCTTGAAAGGGGTCA+TGG + chr4_3:40827977-40827996 Msa0641080:CDS 45.0%
TTCCATGACCCCTTTCAAGA+TGG - chr4_3:40827982-40828001 None:intergenic 45.0%
AAGCTCGCAATGACAAGATC+TGG + chr4_3:40828000-40828019 Msa0641080:CDS 45.0%
AGCTCGCAATGACAAGATCT+GGG + chr4_3:40828001-40828020 Msa0641080:CDS 45.0%
TCCTTAGTGCGTGTTTGGAT+TGG + chr4_3:40828137-40828156 Msa0641080:intron 45.0%
!! GTTTGGATTGGCAGTGAGTT+TGG + chr4_3:40828149-40828168 Msa0641080:intron 45.0%
CCAGTGTGCAATCGTGATTA+TGG - chr4_3:40828225-40828244 None:intergenic 45.0%
CCATAATCACGATTGCACAC+TGG + chr4_3:40828222-40828241 Msa0641080:intron 45.0%
! CAAAAATGGCTTGTGAGGTG+AGG - chr4_3:40828353-40828372 None:intergenic 45.0%
!!! CACCTCACAAGCCATTTTTG+TGG + chr4_3:40828353-40828372 Msa0641080:intron 45.0%
!!! CCTCACAAGCCATTTTTGTG+GGG + chr4_3:40828355-40828374 Msa0641080:intron 45.0%
! CCCAACCACGATTTCTAAGA+TGG + chr4_3:40828388-40828407 Msa0641080:intron 45.0%
!! GATAGCGGAAACCTGATAAC+AGG - chr4_3:40828445-40828464 None:intergenic 45.0%
GTTATCAGGTTTCCGCTATC+GGG + chr4_3:40828445-40828464 Msa0641080:intron 45.0%
GGTTCGTGGACATAAATGGT+GGG - chr4_3:40828474-40828493 None:intergenic 45.0%
TGGTTCGTGGACATAAATGG+TGG - chr4_3:40828475-40828494 None:intergenic 45.0%
! GCTTGGTTCGTGGACATAAA+TGG - chr4_3:40828478-40828497 None:intergenic 45.0%
!! TCCACCTAGTTTTCTTGGTC+TGG + chr4_3:40828952-40828971 Msa0641080:exon 45.0%
TCCAGACCAAGAAAACTAGG+TGG - chr4_3:40828956-40828975 None:intergenic 45.0%
GAGATGCTCTTCACTAACTG+CGG - chr4_3:40829060-40829079 None:intergenic 45.0%
!! AAAATAGTTAAAAAAAAAAA+AGG - chr4_3:40827345-40827364 None:intergenic 5.0%
! TGAAGCTTTGGTGTGGTCAG+TGG - chr4_3:40821943-40821962 None:intergenic 50.0%
! CGGATTGTGAAGCTTTGGTG+TGG - chr4_3:40821950-40821969 None:intergenic 50.0%
TCCCAATGTCTCAGACTCAG+TGG + chr4_3:40821992-40822011 Msa0641080:five_prime_UTR 50.0%
! GCCACTGAGTCTGAGACATT+GGG - chr4_3:40821996-40822015 None:intergenic 50.0%
! AGCCACTGAGTCTGAGACAT+TGG - chr4_3:40821997-40822016 None:intergenic 50.0%
TCTCTCTCTCTCTATACCGG+AGG + chr4_3:40822418-40822437 Msa0641080:five_prime_UTR 50.0%
TCTCTCTCTATACCGGAGGA+TGG + chr4_3:40822422-40822441 Msa0641080:five_prime_UTR 50.0%
AGGACAAAACAAGCAGGGAG+AGG + chr4_3:40822510-40822529 Msa0641080:five_prime_UTR 50.0%
GGAAGGAAAGTTGACGGCAA+AGG - chr4_3:40824149-40824168 None:intergenic 50.0%
! ACGTTCCAACGTTTTGCGGA+AGG - chr4_3:40824166-40824185 None:intergenic 50.0%
CAATGTTGCTGGTCAAGGGT+TGG + chr4_3:40824304-40824323 Msa0641080:intron 50.0%
GTTATTCCTGTGCTTCCCCA+TGG + chr4_3:40824973-40824992 Msa0641080:CDS 50.0%
TATTCCTGTGCTTCCCCATG+GGG + chr4_3:40824975-40824994 Msa0641080:CDS 50.0%
! CCAAGTTGAACAACCCCATG+GGG - chr4_3:40824991-40825010 None:intergenic 50.0%
! TACTAAGGGAGCGCAGTTTG+AGG - chr4_3:40825280-40825299 None:intergenic 50.0%
TGCGCTCCCTTAGTAGCTAA+TGG + chr4_3:40825285-40825304 Msa0641080:CDS 50.0%
TCTCCCCTTAGAACAGGCAT+TGG - chr4_3:40825342-40825361 None:intergenic 50.0%
! GAGGTGTCCATACAGAACTG+TGG - chr4_3:40825377-40825396 None:intergenic 50.0%
GTATTGGGAGGCAAGGTCAT+GGG + chr4_3:40825622-40825641 Msa0641080:CDS 50.0%
TCTCAACCGAAAACCGATGG+AGG + chr4_3:40825684-40825703 Msa0641080:CDS 50.0%
GTTTGGCTACCTCGGATCAA+AGG + chr4_3:40825976-40825995 Msa0641080:CDS 50.0%
!! GAGACGGTGATGGAATCTTC+AGG - chr4_3:40826022-40826041 None:intergenic 50.0%
! TCAGGCAATGGCATTTTCCC+AGG + chr4_3:40826362-40826381 Msa0641080:CDS 50.0%
TCGAGACCACAGCATCTAAC+AGG - chr4_3:40826403-40826422 None:intergenic 50.0%
TGCGCGATAATGTTAGCGAG+GGG + chr4_3:40826528-40826547 Msa0641080:CDS 50.0%
CTTAGTTCATGGGTGGAGAG+TGG + chr4_3:40826677-40826696 Msa0641080:CDS 50.0%
ATTTGGCGATCTTTGGGTCG+AGG - chr4_3:40826812-40826831 None:intergenic 50.0%
GAAACAGACTGGGGAATCCA+AGG + chr4_3:40827074-40827093 Msa0641080:CDS 50.0%
GCTACATGGGCATATGAGGT+TGG + chr4_3:40827723-40827742 Msa0641080:CDS 50.0%
TACCTCGACTAGCATCTGAC+GGG - chr4_3:40827796-40827815 None:intergenic 50.0%
GTACCTCGACTAGCATCTGA+CGG - chr4_3:40827797-40827816 None:intergenic 50.0%
CAGATGCTTTGTGAGGAACG+GGG + chr4_3:40827912-40827931 Msa0641080:intron 50.0%
GCCAATCCAAACACGCACTA+AGG - chr4_3:40828141-40828160 None:intergenic 50.0%
GTCACACATCGGATAGGTGA+TGG + chr4_3:40828297-40828316 Msa0641080:intron 50.0%
! CCCCACAAAAATGGCTTGTG+AGG - chr4_3:40828358-40828377 None:intergenic 50.0%
AGAGCCTCTCCAAGATCCAT+TGG + chr4_3:40828415-40828434 Msa0641080:intron 50.0%
GAGCCTCTCCAAGATCCATT+GGG + chr4_3:40828416-40828435 Msa0641080:intron 50.0%
AGCGGAAACCTGATAACAGG+TGG - chr4_3:40828442-40828461 None:intergenic 50.0%
! TCGTGGACATAAATGGTGGG+TGG - chr4_3:40828471-40828490 None:intergenic 50.0%
GTCTCACATCGGATAGGTGA+TGG + chr4_3:40828532-40828551 Msa0641080:intron 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr4_3:40828589-40828608 Msa0641080:intron 50.0%
TTGGAGCAAACAGCAAAGGG+AGG + chr4_3:40828871-40828890 Msa0641080:CDS 50.0%
TGCACCGGAATTCCATCCTC+CGG - chr4_3:40822437-40822456 None:intergenic 55.0%
CACCCTTCCCTGTCTTGGTA+AGG - chr4_3:40824197-40824216 None:intergenic 55.0%
CGAGTGAGAGGGCAACGATA+CGG - chr4_3:40824392-40824411 None:intergenic 55.0%
AGAGCAGCACTCGAGTGAGA+GGG - chr4_3:40824403-40824422 None:intergenic 55.0%
AAGAGCAGCACTCGAGTGAG+AGG - chr4_3:40824404-40824423 None:intergenic 55.0%
CCCCATGGGGTTGTTCAACT+TGG + chr4_3:40824988-40825007 Msa0641080:CDS 55.0%
!! TCTTCGGATAGAAGGGCACC+GGG - chr4_3:40825174-40825193 None:intergenic 55.0%
! GTCTTCGGATAGAAGGGCAC+CGG - chr4_3:40825175-40825194 None:intergenic 55.0%
! GGTATTGGGAGGCAAGGTCA+TGG + chr4_3:40825621-40825640 Msa0641080:CDS 55.0%
CGGCAGTGGATAATTCGGGA+GGG - chr4_3:40825827-40825846 None:intergenic 55.0%
TCGGCAGTGGATAATTCGGG+AGG - chr4_3:40825828-40825847 None:intergenic 55.0%
GCGCGATAATGTTAGCGAGG+GGG + chr4_3:40826529-40826548 Msa0641080:CDS 55.0%
!! GTTAGCGAGGGGGCATTGTT+TGG + chr4_3:40826539-40826558 Msa0641080:CDS 55.0%
GGAGGTCAAAACAAGCCCTG+CGG + chr4_3:40826574-40826593 Msa0641080:CDS 55.0%
GATCTTTGGGTCGAGGCCTT+GGG - chr4_3:40826805-40826824 None:intergenic 55.0%
! ATCAGTTAGCGGACCGCAGA+TGG - chr4_3:40827630-40827649 None:intergenic 55.0%
AGGGGCTACATGGGCATATG+AGG + chr4_3:40827719-40827738 Msa0641080:CDS 55.0%
ACCTCGACTAGCATCTGACG+GGG - chr4_3:40827795-40827814 None:intergenic 55.0%
! CTGGGCACGCTTTTCTGTTG+AGG + chr4_3:40828019-40828038 Msa0641080:CDS 55.0%
TGGCCCAATGGATCTTGGAG+AGG - chr4_3:40828422-40828441 None:intergenic 55.0%
ACAGGTGGCCCAATGGATCT+TGG - chr4_3:40828427-40828446 None:intergenic 55.0%
CCTGATAACAGGTGGCCCAA+TGG - chr4_3:40828434-40828453 None:intergenic 55.0%
CCATTGGGCCACCTGTTATC+AGG + chr4_3:40828431-40828450 Msa0641080:intron 55.0%
! GCACTATTGGGCTTGGTTCG+TGG - chr4_3:40828488-40828507 None:intergenic 55.0%
CGAACCAAGCCCAATAGTGC+TGG + chr4_3:40828488-40828507 Msa0641080:intron 55.0%
ACGACCAGCACTATTGGGCT+TGG - chr4_3:40828495-40828514 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+GGG - chr4_3:40828500-40828519 None:intergenic 55.0%
!! CCCAATAGTGCTGGTCGTGA+GGG + chr4_3:40828497-40828516 Msa0641080:intron 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG + chr4_3:40828498-40828517 Msa0641080:intron 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG + chr4_3:40828499-40828518 Msa0641080:intron 55.0%
GCAATCCTCACCTCACAAGC+CGG + chr4_3:40828345-40828364 Msa0641080:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr4_3:40828588-40828607 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr4_3:40828588-40828607 Msa0641080:intron 55.0%
!! TCCCACAAAACCGGCTTGTG+AGG - chr4_3:40828593-40828612 None:intergenic 55.0%
! ACCAAGACAGGGAAGGGTGC+TGG + chr4_3:40824198-40824217 Msa0641080:CDS 60.0%
ACCAGCACCCTTCCCTGTCT+TGG - chr4_3:40824202-40824221 None:intergenic 60.0%
! ACAACCCCATGGGGAAGCAC+AGG - chr4_3:40824982-40825001 None:intergenic 60.0%
CGATCTTTGGGTCGAGGCCT+TGG - chr4_3:40826806-40826825 None:intergenic 60.0%
ACTTCGAGGGAGGGGCTACA+TGG + chr4_3:40827709-40827728 Msa0641080:CDS 60.0%
CTTCGAGGGAGGGGCTACAT+GGG + chr4_3:40827710-40827729 Msa0641080:CDS 60.0%
TCCCCGTCAGATGCTAGTCG+AGG + chr4_3:40827791-40827810 Msa0641080:CDS 60.0%
!! AATGGTGGGTGGCCCGATAG+CGG - chr4_3:40828460-40828479 None:intergenic 60.0%
!! GCCCAATAGTGCTGGTCGTG+AGG + chr4_3:40828496-40828515 Msa0641080:intron 60.0%
CCCCTCACGACCAGCACTAT+TGG - chr4_3:40828501-40828520 None:intergenic 60.0%
GCAGGGAGAGGATCGTGTCG+TGG + chr4_3:40822522-40822541 Msa0641080:five_prime_UTR 65.0%
CTTGGACGGGCCGCATTCAC+AGG + chr4_3:40824441-40824460 Msa0641080:CDS 65.0%
CGAGGCCTTGGGTTCTCTCC+AGG - chr4_3:40826794-40826813 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 40821939 40829425 40821939 ID=Msa0641080;Name=Msa0641080
chr4_3 mRNA 40821939 40829425 40821939 ID=Msa0641080-mRNA-1;Parent=Msa0641080;Name=Msa0641080-mRNA-1;_AED=0.04;_eAED=0.04;_QI=740|1|1|1|1|1|10|465|923
chr4_3 exon 40821939 40822773 40821939 ID=Msa0641080-mRNA-1:exon:9180;Parent=Msa0641080-mRNA-1
chr4_3 exon 40824115 40824321 40824115 ID=Msa0641080-mRNA-1:exon:9181;Parent=Msa0641080-mRNA-1
chr4_3 exon 40824437 40824518 40824437 ID=Msa0641080-mRNA-1:exon:9182;Parent=Msa0641080-mRNA-1
chr4_3 exon 40824830 40824871 40824830 ID=Msa0641080-mRNA-1:exon:9183;Parent=Msa0641080-mRNA-1
chr4_3 exon 40824964 40825023 40824964 ID=Msa0641080-mRNA-1:exon:9184;Parent=Msa0641080-mRNA-1
chr4_3 exon 40825108 40826883 40825108 ID=Msa0641080-mRNA-1:exon:9185;Parent=Msa0641080-mRNA-1
chr4_3 exon 40826994 40827095 40826994 ID=Msa0641080-mRNA-1:exon:9186;Parent=Msa0641080-mRNA-1
chr4_3 exon 40827672 40827812 40827672 ID=Msa0641080-mRNA-1:exon:9187;Parent=Msa0641080-mRNA-1
chr4_3 exon 40827915 40828040 40827915 ID=Msa0641080-mRNA-1:exon:9188;Parent=Msa0641080-mRNA-1
chr4_3 exon 40828820 40829425 40828820 ID=Msa0641080-mRNA-1:exon:9189;Parent=Msa0641080-mRNA-1
chr4_3 five_prime_UTR 40821939 40822678 40821939 ID=Msa0641080-mRNA-1:five_prime_utr;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40822679 40822773 40822679 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40824115 40824321 40824115 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40824437 40824518 40824437 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40824830 40824871 40824830 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40824964 40825023 40824964 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40825108 40826883 40825108 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40826994 40827095 40826994 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40827672 40827812 40827672 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40827915 40828040 40827915 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 CDS 40828820 40828960 40828820 ID=Msa0641080-mRNA-1:cds;Parent=Msa0641080-mRNA-1
chr4_3 three_prime_UTR 40828961 40829425 40828961 ID=Msa0641080-mRNA-1:three_prime_utr;Parent=Msa0641080-mRNA-1
Gene Sequence

>Msa0641080

ATGGGGTTTTTGTTGAAAGAAGCTTTGAAGACTCTTTGTGCTAGGAATCAATGGTCTTATGCTGTTTTTTGGAAGATCGGTTGCAATAATTCAAAGCTGTTAATCTGGGAAGATTGCTACTATGAACCTTTGCCGTCAACTTTCCTTCCGCAAAACGTTGGAACGTCTAATTTACCTTACCAAGACAGGGAAGGGTGCTGGTTTTCTGCCGATTCTCAGCTAAGGATTCAAGAGGACGATAGAGTCTGCTCATTGATTAACAAAATGATGGTGAATAATTCTGTCAATGTTGCTGGTCAAGGGATACTTGGACGGGCCGCATTCACAGGAAATCATCAGTGGATTCTTTTGAACAATTTCATTAAAGATGTATATCCACCAGAGGTGTTAAATGAGGTGCATTGCCAATTTTCAGCTGGAATGCAGACAGTGGTGGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCGATAATGGAGAATATCGGATTTGTGAATGATGTGAAGAACTTGATCTTTCAATTGGGACATGTTCCCGGTGCCCTTCTATCCGAAGACTATTCAACAAGACTTTCAAGTGAAAGACACACCGGATCTGTGACTGATTCTGTTCCTGTATCTTCTAATCCACACGTCATTACCTCAAACTGCGCTCCCTTAGTAGCTAATGGATCTAACCAACCAAGTAATTCGTTGCATAGTCCAATGCCTGTTCTAAGGGGAGAAATAAATAGTTACCACAGTTCTGTATGGACACCTCAATCCCAAAACCTAAACCAGATATTTGATAGCCTTTGCCAACCAAAAGCTCAACAAGAGAATACAATTGTGAAGGCTGAAGCTGAAGTGATACCTGCGAGTCTTGATTCTTCATGTCTGCAACGACGTTCTGTTTCATATAACGCAAGATCTGCACTCAATGAATTAACTGATTCCAATCTGAATGGTTTTGGTCTTAAACAAATGGAGCAACAAGTCTTTTCAGGTATTGGGAGGCAAGGTCATGGGAACCCTAATATGAATCCATCATCAAGTGTCTTCAATATGTCTCAACCGAAAACCGATGGAGGTAAAATTTATTATCAGAATTCTAACAACACTTCACTTCTTGGAGGAATCCCAATTTGTAGTAGTGGGATGAATAATAATCTTTTAAGGACAAATATGATTAACTGCTCAGTTTCAAACCCTCCCGAATTATCCACTGCCGATTTTTCTGGAAAACAAAAAGTAGGGTTTGGAATTCAAAACAATAATTCAACTAAAGCTGCTAATCGCATGCATCTAGAAGGCTCTTATCAGAAGAATCTTCCAGTTGACTTAAAGCATGATCAAGATGGTTTGGCTACCTCGGATCAAAGGATAGATGATTTGCTTCAGGGCCTGAAGATTCCATCACCGTCTCTTTATCGTGAGGAGCATGTGTCTATGAATGATCACATCCCTGATTTTCTTCGTGATTGCCTCGATAAAGATGTTACTAACCAACACATGATGAAAACAAATTTTGAACATGGAGAATCTTGTACGCAACTTTCATCGGGTGATGATGACTTGTTTGATGTCTTGGGCATGGACTTCAAAATGAAACTGCTGAATGGAAACTGGAATACGTTGTTTGCAGATGAATTGGATGGCAATGCAGAAAAACTGGATAAAAAGGCAATGTCTACGAGTTTTTCGGTAGTAGGTCACGATAATATTTATCCTGTTAATGAAGCAATATCAGGCAATGGCATTTTCCCAGGAACAAACACTGATCACCTGTTAGATGCTGTGGTCTCGAAGACTCAATCTGTTTCCAATCAGAATTCTGATGAAATGTCATGTAGGACCACAGTAACAAGGATTAGTACAGCATCTGTACCTTCTCCTACCAGCATGCATATTATGCGCGATAATGTTAGCGAGGGGGCATTGTTTGGTTTTCCCAAAACGGAGGTCAAAACAAGCCCTGCGGAAACAAGTTCTATTAGATCTGGCTGCAGCAAAGATAATGTTGGAAACTGTTCTCAAACCACTTCCATATATGGTTCTCAACTTAGTTCATGGGTGGAGAGTGGTAGCAGCAATGTGAAGCGTGAAAACAGTGTTTCAACTGGATACTCTAAGCGGCCAGAAGAAGTTTCCAAATCAAACCGTAAGAGGCTTAAACCTGGAGAGAACCCAAGGCCTCGACCCAAAGATCGCCAAATGATTCAAGATCGCGTGAAAGAGTTACGTGAAATTGTGCCTAATGGAGCAAAGTGTAGCATAGACGCTCTTCTTGAAAGGACCATCAAACATATGCTTTTCTTGCAAAGTGTAACAAAGCATGCTGATAAGCTGAAACAGACTGGGGAATCCAAGATTGTTAGTAAAGAAGGTGGATTGTTGTTAAAAGATAACTTCGAGGGAGGGGCTACATGGGCATATGAGGTTGGCTCACAATCAATGGTTTGCCCTATCATTGTTGAGGATCTTAATCATCCCCGTCAGATGCTAGTCGAGATGCTTTGTGAGGAACGGGGTTTCTTTCTTGAAATAGCCGACTTAATCAGAGGATTAGGGTTAACCATCTTGAAAGGGGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTTCTGTTGAGGCAAATAGGGATGTAACAAGGATGGAAATATTCATGTCACTAGTTCGACTTTTGGAGCAAACAGCAAAGGGAGGCGCAGCTTCATCAAATGCTCCAGTTGATAACATGATGGTTTATCATTCTATCCCACAATCCACCTAG
Protein sequence

>Msa0641080

MGFLLKEALKTLCARNQWSYAVFWKIGCNNSKLLIWEDCYYEPLPSTFLPQNVGTSNLPYQDREGCWFSADSQLRIQEDDRVCSLINKMMVNNSVNVAGQGILGRAAFTGNHQWILLNNFIKDVYPPEVLNEVHCQFSAGMQTVVVIPVLPHGVVQLGSFLPIMENIGFVNDVKNLIFQLGHVPGALLSEDYSTRLSSERHTGSVTDSVPVSSNPHVITSNCAPLVANGSNQPSNSLHSPMPVLRGEINSYHSSVWTPQSQNLNQIFDSLCQPKAQQENTIVKAEAEVIPASLDSSCLQRRSVSYNARSALNELTDSNLNGFGLKQMEQQVFSGIGRQGHGNPNMNPSSSVFNMSQPKTDGGKIYYQNSNNTSLLGGIPICSSGMNNNLLRTNMINCSVSNPPELSTADFSGKQKVGFGIQNNNSTKAANRMHLEGSYQKNLPVDLKHDQDGLATSDQRIDDLLQGLKIPSPSLYREEHVSMNDHIPDFLRDCLDKDVTNQHMMKTNFEHGESCTQLSSGDDDLFDVLGMDFKMKLLNGNWNTLFADELDGNAEKLDKKAMSTSFSVVGHDNIYPVNEAISGNGIFPGTNTDHLLDAVVSKTQSVSNQNSDEMSCRTTVTRISTASVPSPTSMHIMRDNVSEGALFGFPKTEVKTSPAETSSIRSGCSKDNVGNCSQTTSIYGSQLSSWVESGSSNVKRENSVSTGYSKRPEEVSKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNHPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWARFSVEANRDVTRMEIFMSLVRLLEQTAKGGAASSNAPVDNMMVYHSIPQST*