AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0544960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544960 MtrunA17_Chr4g0025571 96.316 923 32 2 1 923 1 921 0.0 1835
Msa0544960 MtrunA17_Chr2g0322001 60.256 936 300 20 1 921 1 879 0.0 1011
Msa0544960 MtrunA17_Chr1g0188861 54.795 219 91 2 694 907 545 760 7.74e-65 233
Msa0544960 MtrunA17_Chr7g0261061 56.771 192 79 2 709 896 466 657 3.11e-57 209
Msa0544960 MtrunA17_Chr7g0261061 34.225 187 104 5 5 184 5 179 3.65e-17 86.3
Msa0544960 MtrunA17_Chr1g0184231 54.124 194 83 3 709 896 466 659 5.63e-55 202
Msa0544960 MtrunA17_Chr1g0184231 30.556 216 113 7 1 209 1 186 4.85e-20 95.5
Msa0544960 MtrunA17_Chr7g0239641 35.644 303 171 7 588 887 385 666 5.27e-43 167
Msa0544960 MtrunA17_Chr7g0239641 31.579 190 102 6 5 180 6 181 1.61e-18 90.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0544960 AT2G27230.2 52.868 401 126 8 514 905 283 629 4.89e-114 364
Msa0544960 AT2G27230.2 53.086 243 87 5 1 239 1 220 2.74e-66 235
Msa0544960 AT2G27230.1 52.868 401 126 8 514 905 283 629 4.89e-114 364
Msa0544960 AT2G27230.1 53.086 243 87 5 1 239 1 220 2.74e-66 235
Msa0544960 AT1G64625.3 54.229 201 80 2 700 900 309 497 1.86e-61 218
Msa0544960 AT1G64625.2 54.229 201 80 2 700 900 323 511 2.68e-61 218
Msa0544960 AT1G64625.1 54.229 201 80 2 700 900 333 521 3.09e-61 218
Msa0544960 AT1G06150.1 55.026 189 83 1 713 899 543 731 8.79e-59 215
Msa0544960 AT1G06150.2 54.450 191 83 2 713 899 543 733 4.02e-57 210
Msa0544960 AT2G31280.1 53.439 189 79 2 713 899 535 716 8.75e-55 203
Msa0544960 AT2G31280.1 32.044 181 93 4 1 180 1 152 1.51e-18 91.3
Msa0544960 AT2G31280.3 49.515 206 78 2 713 899 535 733 4.55e-53 198
Msa0544960 AT2G31280.3 32.044 181 93 4 1 180 1 152 1.69e-18 91.3
Msa0544960 AT2G31280.2 48.223 197 71 2 713 885 507 696 1.24e-47 182
Msa0544960 AT1G64625.4 59.140 93 37 1 700 792 323 414 7.92e-27 115
Msa0544960 AT5G53900.2 25.957 235 121 10 5 212 21 229 5.72e-13 72.0
Msa0544960 AT3G15240.2 27.014 211 103 8 5 190 34 218 2.26e-12 70.1

Find 271 sgRNAs with CRISPR-Local

Find 571 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAATATCTGGTTTAGGTTT+TGG 0.145638 4_1:-34306708 None:intergenic
CTTGATGATGAATTCATATT+AGG 0.154758 4_1:-34306955 None:intergenic
CCTGATATTGCTTCATTAAC+AGG 0.206849 4_1:-34307651 None:intergenic
TTCATCCCACTACTACAAAT+TGG 0.216782 4_1:-34307063 None:intergenic
TTTCCAAATCAAACCGTAAA+AGG 0.221964 4_1:+34308069 Msa0544960:CDS
GACTTTGCAGGCTGTTAATC+TGG 0.237499 4_1:+34305413 Msa0544960:intron
TTGAATCATTTGGCGATCTT+TGG 0.239359 4_1:-34308123 None:intergenic
TCTAACAACACTTCACTTCT+TGG 0.240160 4_1:+34307033 Msa0544960:CDS
CGATCTTTGGGACGAGGCCT+TGG 0.249035 4_1:-34308110 None:intergenic
CGAAGATAGCTTGAAGCTTT+AGG 0.253479 4_1:+34310625 Msa0544960:three_prime_UTR
GATTCCAATCTGAATGGTTT+TGG 0.257248 4_1:+34306874 Msa0544960:CDS
AACAGAACATGTTTCTTCTT+TGG 0.258249 4_1:+34303816 Msa0544960:five_prime_UTR
TCTCAAACCACTTCCATATA+TGG 0.269006 4_1:+34307954 Msa0544960:CDS
TGTATAGATATTGTAGGATT+TGG 0.275566 4_1:+34310720 Msa0544960:three_prime_UTR
CAAGAAAAGCATATGTTTGA+TGG 0.277270 4_1:-34308330 None:intergenic
CCTGCATTCCAGCTGAAAAT+TGG 0.285378 4_1:-34306157 None:intergenic
TTTCTTTCCTGTAATTTGAT+TGG 0.291344 4_1:+34310675 Msa0544960:three_prime_UTR
GCCGACTTAATCAGAGGATT+AGG 0.307196 4_1:+34309491 Msa0544960:CDS
CTACTTTGATTCCATTGGTT+TGG 0.316881 4_1:+34303879 Msa0544960:five_prime_UTR
AGGCAATCGCGAAGAAAATC+AGG 0.319533 4_1:-34307387 None:intergenic
TTTGATTTGGAAACTTCTTC+TGG 0.319876 4_1:-34308059 None:intergenic
GGCAAAGGCTATCAAATATC+TGG 0.320742 4_1:-34306720 None:intergenic
AAGGATAGATGATTTGCTTC+AGG 0.324044 4_1:+34307302 Msa0544960:CDS
TCAACTTGGTTCTTTCTTGC+CGG 0.324554 4_1:+34306309 Msa0544960:CDS
TGATGATGCTTTAAATCAAC+TGG 0.329683 4_1:-34307255 None:intergenic
CCCCATGGGGTTGTTCAACT+TGG 0.332845 4_1:+34306295 Msa0544960:CDS
ATCTAGTCTTATTAGACTTC+AGG 0.333736 4_1:+34310534 Msa0544960:three_prime_UTR
CATGTCACTAGTTCGACTTT+TGG 0.338043 4_1:+34310371 Msa0544960:CDS
TGATGACTTGTTTGATGTCT+TGG 0.341490 4_1:+34307491 Msa0544960:CDS
TGTCGTGGTAGTTAGTTTCT+AGG 0.341520 4_1:+34303784 Msa0544960:five_prime_UTR
GAAGAACTTGATCTTTCAAT+TGG 0.344631 4_1:+34306447 Msa0544960:CDS
TTAAGATCCTCAACAATGAT+AGG 0.347902 4_1:-34309305 None:intergenic
TGAAACTGCTGAATGGAAAC+TGG 0.349119 4_1:+34307529 Msa0544960:CDS
TACGTTGTTTGCAGATGAAT+TGG 0.349339 4_1:+34307554 Msa0544960:CDS
TTGATGATGAATTCATATTA+GGG 0.349916 4_1:-34306954 None:intergenic
GGCTATCAAATATCTGGTTT+AGG 0.351014 4_1:-34306714 None:intergenic
ACTAAGTTGAGAACCATATA+TGG 0.352528 4_1:-34307967 None:intergenic
TTGAATAGTCTTCGGATAGA+AGG 0.352623 4_1:-34306486 None:intergenic
ATAGTCCAATGCCTGTTCTA+AGG 0.353351 4_1:+34306641 Msa0544960:CDS
GTATTCTCTCGTTGAGCCTT+TGG 0.357599 4_1:-34306745 None:intergenic
TTTCAATTGGGACATGTTCC+CGG 0.359507 4_1:+34306460 Msa0544960:CDS
CGAGGCCTTGGGTTCTCTCC+AGG 0.360591 4_1:-34308098 None:intergenic
AGGTGATCAGTGTTTGTTCC+TGG 0.365226 4_1:-34307687 None:intergenic
TGAATCATTTGGCGATCTTT+GGG 0.365895 4_1:-34308122 None:intergenic
GTTAGATCCATTAGCTACTA+AGG 0.365982 4_1:-34306599 None:intergenic
TCACGCGATCTTGAATCATT+TGG 0.367296 4_1:-34308133 None:intergenic
AGTGAGGGTTGTTGAGAAAA+GGG 0.369503 4_1:-34303299 None:intergenic
CCGACTTAATCAGAGGATTA+GGG 0.369714 4_1:+34309492 Msa0544960:CDS
AAAATCGGTAGTGGATAATT+CGG 0.371903 4_1:-34307136 None:intergenic
CAACACACCAATCAAATTAC+AGG 0.373634 4_1:-34310682 None:intergenic
ATGGTTCTCAACTTAGTTCA+TGG 0.375053 4_1:+34307973 Msa0544960:CDS
ACAGATGCTTTGTGAGGAAC+GGG 0.380475 4_1:+34309451 Msa0544960:intron
CATTTCATCAGAATTCTGAT+TGG 0.381764 4_1:-34307745 None:intergenic
GATCTTTGGGACGAGGCCTT+GGG 0.384972 4_1:-34308109 None:intergenic
AAGCTCGCAATGACAAGATC+TGG 0.388708 4_1:+34309540 Msa0544960:CDS
GGACTATGCAACGAATTACT+TGG 0.391316 4_1:-34306625 None:intergenic
GATGTGAAACTGAAAATAAA+TGG 0.392583 4_1:-34303327 None:intergenic
TCATCCCACTACTACAAATT+GGG 0.398306 4_1:-34307062 None:intergenic
AAAGCATCATCAAGATGCTT+TGG 0.400215 4_1:+34307266 Msa0544960:CDS
TGTTAGATAATGGAGAATAT+CGG 0.405356 4_1:+34306409 Msa0544960:intron
TGCGCTCCCTTAGTAGCTAA+TGG 0.406239 4_1:+34306592 Msa0544960:CDS
GAGTGAGGGTTGTTGAGAAA+AGG 0.408682 4_1:-34303300 None:intergenic
GAATGCTACTTTGATTCCAT+TGG 0.416360 4_1:+34303874 Msa0544960:five_prime_UTR
TCTACCGGAGGATGGAATTC+CGG 0.418411 4_1:+34303677 Msa0544960:five_prime_UTR
CGTGAAAATAGTGTTTCAAC+TGG 0.418572 4_1:+34308023 Msa0544960:CDS
TCGAGACCACAGCATCTAAC+AGG 0.418656 4_1:-34307707 None:intergenic
ATTGTAGGATTTGGACATAA+GGG 0.419647 4_1:+34310729 Msa0544960:three_prime_UTR
CTGTAATTTGATTGGTGTGT+TGG 0.419958 4_1:+34310683 Msa0544960:three_prime_UTR
CAGAACTAAGAATGAACAAA+AGG 0.421108 4_1:-34303852 None:intergenic
GCCAATCACATGCATCTAGA+AGG 0.421112 4_1:+34307213 Msa0544960:CDS
TTCACTTTCTCTCTCTCTAC+CGG 0.421558 4_1:+34303662 Msa0544960:five_prime_UTR
CTAATTTACCTTACCAAGAC+AGG 0.424042 4_1:+34305494 Msa0544960:CDS
TTATTCCTGTGCTTCCCCAT+GGG 0.425095 4_1:+34306281 Msa0544960:CDS
ATCTTGTACGCAACTTTCAT+CGG 0.426529 4_1:+34307464 Msa0544960:CDS
AAGACCAAAACCATTCAGAT+TGG 0.429209 4_1:-34306878 None:intergenic
TTCAAAATGAAACTGCTGAA+TGG 0.429885 4_1:+34307522 Msa0544960:CDS
GCTGATAAGCTGAAACAGAC+TGG 0.431363 4_1:+34308371 Msa0544960:CDS
TTTATTTCTCCCCTTAGAAC+AGG 0.431461 4_1:-34306652 None:intergenic
GTTATTCCTGTGCTTCCCCA+TGG 0.432971 4_1:+34306280 Msa0544960:CDS
AGCCACTGAGTCTGAGACAT+TGG 0.433015 4_1:-34303248 None:intergenic
CTCTTTGTGCTAGGAATCAA+TGG 0.434131 4_1:+34303958 Msa0544960:CDS
CCTGTTAATGAAGCAATATC+AGG 0.434431 4_1:+34307651 Msa0544960:CDS
TGAGGTTGGCTCACAATCAA+TGG 0.439147 4_1:+34309277 Msa0544960:CDS
TTCAGATGTATAGATATTGT+AGG 0.441487 4_1:+34310714 Msa0544960:three_prime_UTR
CAAGAAAACTAGGTGGGTTG+TGG 0.443971 4_1:-34310465 None:intergenic
TAAACCATCATGTTATCAAC+TGG 0.446367 4_1:-34310432 None:intergenic
AATAATTCTGTCAATGTTGC+TGG 0.446556 4_1:+34305601 Msa0544960:CDS
TTAACTGATTCCAATCTGAA+TGG 0.447162 4_1:+34306868 Msa0544960:CDS
TTGCTGTTATGTAGAATACT+TGG 0.450276 4_1:+34305730 Msa0544960:intron
CTTGTTTGATGTCTTGGGCA+TGG 0.452227 4_1:+34307497 Msa0544960:CDS
TATTGTAGGATTTGGACATA+AGG 0.455207 4_1:+34310728 Msa0544960:three_prime_UTR
ACCAGCATCCTTCCCTGTCT+TGG 0.455785 4_1:-34305507 None:intergenic
AAGTCTTGTTGAATAGTCTT+CGG 0.456401 4_1:-34306494 None:intergenic
GTGCAGATTGTTAGTAAAGA+AGG 0.456740 4_1:+34309206 Msa0544960:intron
TCTGTCAATGTTGCTGGTCA+AGG 0.459032 4_1:+34305607 Msa0544960:CDS
TTACGTGAAATTGTGCCTAA+TGG 0.460598 4_1:+34308161 Msa0544960:CDS
GATGACTTGTTTGATGTCTT+GGG 0.462846 4_1:+34307492 Msa0544960:CDS
ATTGGGAGAAGAGAAGAGAA+TGG 0.464368 4_1:-34303230 None:intergenic
AAACTATCCCACGAGATTCA+AGG 0.468406 4_1:-34303560 None:intergenic
GAGACGGTGATGGAATCTTC+AGG 0.469515 4_1:-34307326 None:intergenic
AAGAACTTGATCTTTCAATT+GGG 0.470150 4_1:+34306448 Msa0544960:CDS
CATGAAGAATCAAGACTTGC+CGG 0.471249 4_1:-34306796 None:intergenic
CTAATAGAACTTGTTTCCGC+AGG 0.472730 4_1:-34307897 None:intergenic
ACTTCGAGGGAGGGGCTACA+TGG 0.472832 4_1:+34309249 Msa0544960:CDS
AGGGGCTACATGGGCATATG+AGG 0.472884 4_1:+34309259 Msa0544960:CDS
GCCTTCTAGATGCATGTGAT+TGG 0.473846 4_1:-34307214 None:intergenic
CTTTGAAGACTCTTTGTGCT+AGG 0.476288 4_1:+34303949 Msa0544960:CDS
AAAATAAATGGAAGTGAGTG+AGG 0.477766 4_1:-34303315 None:intergenic
GAAACAAGTTCTATTAGATC+TGG 0.479035 4_1:+34307903 Msa0544960:CDS
CGAGATTCAAGGTTGTTAAG+AGG 0.479777 4_1:-34303549 None:intergenic
AGGATAGATGATTTGCTTCA+GGG 0.484084 4_1:+34307303 Msa0544960:CDS
ACCAAGACAGGGAAGGATGC+TGG 0.484405 4_1:+34305506 Msa0544960:CDS
AAATCGGTAGTGGATAATTC+GGG 0.484474 4_1:-34307135 None:intergenic
TATGCAACGAATTACTTGGT+TGG 0.484749 4_1:-34306621 None:intergenic
TAGTCCAATGCCTGTTCTAA+GGG 0.486989 4_1:+34306642 Msa0544960:CDS
AAAAGATAACTTCGAGGGAG+GGG 0.489680 4_1:+34309241 Msa0544960:CDS
AACAACACTTCACTTCTTGG+AGG 0.490153 4_1:+34307036 Msa0544960:CDS
CATTCCAGACCAAGAAAACT+AGG 0.490562 4_1:-34310475 None:intergenic
TTTGTCGGATTGTGAAGCTT+TGG 0.490893 4_1:-34303206 None:intergenic
TCTCCCCTTAGAACAGGCAT+TGG 0.493677 4_1:-34306646 None:intergenic
CTTGGACGGGCCGCAATCAC+AGG 0.493881 4_1:+34305748 Msa0544960:CDS
GTATATACCTTTGCTCCATT+AGG 0.494185 4_1:-34308176 None:intergenic
GGTGATCAGTGTTTGTTCCT+GGG 0.495320 4_1:-34307686 None:intergenic
CACAGATGCTTTGTGAGGAA+CGG 0.495392 4_1:+34309450 Msa0544960:intron
TGCACCGGAATTCCATCCTC+CGG 0.495889 4_1:-34303681 None:intergenic
GCCACTGAGTCTGAGACATT+GGG 0.496635 4_1:-34303247 None:intergenic
TACTAAGGGAGCGCAGTTTG+AGG 0.497986 4_1:-34306584 None:intergenic
TAGGGTTAACCATCTTGAAA+GGG 0.499756 4_1:+34309510 Msa0544960:CDS
ACTAGATTTGATGTCAATCA+TGG 0.503050 4_1:-34310518 None:intergenic
AGGGTTGTTGAGAAAAGGGA+AGG 0.503727 4_1:-34303295 None:intergenic
ATAGTTACCACAGTTCTGTA+TGG 0.503951 4_1:+34306674 Msa0544960:CDS
GGCTGAAGCTGAAGTGATAC+CGG 0.505415 4_1:+34306777 Msa0544960:CDS
TTCCATGACCCCTTTCAAGA+TGG 0.505484 4_1:-34309519 None:intergenic
TTGAATCCTTAGCTGAGAAT+CGG 0.508972 4_1:-34305536 None:intergenic
TCTTGTACGCAACTTTCATC+GGG 0.509856 4_1:+34307465 Msa0544960:CDS
AACAGAATCAGTCACAGATC+CGG 0.511871 4_1:-34306533 None:intergenic
TTTCTTCCGATTCTCAGCTA+AGG 0.517018 4_1:+34305530 Msa0544960:CDS
TTGTAGGATTTGGACATAAG+GGG 0.517716 4_1:+34310730 Msa0544960:three_prime_UTR
TTAGGGTTAACCATCTTGAA+AGG 0.518572 4_1:+34309509 Msa0544960:CDS
ACGTGTGGATTAGAAGATAC+AGG 0.518675 4_1:-34306556 None:intergenic
TGGTTCTCAACTTAGTTCAT+GGG 0.519370 4_1:+34307974 Msa0544960:CDS
CTTCGAGGGAGGGGCTACAT+GGG 0.519484 4_1:+34309250 Msa0544960:CDS
TGTAGGATTTGGACATAAGG+GGG 0.524041 4_1:+34310731 Msa0544960:three_prime_UTR
AAGAAAACTAGGTGGGTTGT+GGG 0.524311 4_1:-34310464 None:intergenic
AAAGATCACTACTCCAAGAA+AGG 0.526163 4_1:-34310807 None:intergenic
CGCATAATCTGCATGCTGGT+AGG 0.527151 4_1:-34307816 None:intergenic
GGAATCCCAATTTGTAGTAG+TGG 0.529036 4_1:+34307057 Msa0544960:CDS
CTGATAAGCTGAAACAGACT+GGG 0.529953 4_1:+34308372 Msa0544960:CDS
GTTGAGCCTTTGGTTGGCAA+AGG 0.531536 4_1:-34306735 None:intergenic
ACTTTGCAGGCTGTTAATCT+GGG 0.532556 4_1:+34305414 Msa0544960:intron
TTGAGAACCATATATGGAAG+TGG 0.535342 4_1:-34307961 None:intergenic
CTATTGTCAGTTTCTTGCAC+CGG 0.536270 4_1:-34303696 None:intergenic
GTCTTCGGATAGAAGGGCGC+CGG 0.536915 4_1:-34306479 None:intergenic
ACGAGAGAATACAACTGTAA+AGG 0.538855 4_1:+34306756 Msa0544960:CDS
TCTCTCGTTGAGCCTTTGGT+TGG 0.539797 4_1:-34306741 None:intergenic
TGCTCCAGTTGATAACATGA+TGG 0.541570 4_1:+34310428 Msa0544960:CDS
GGTTTGCCCTATCATTGTTG+AGG 0.542213 4_1:+34309298 Msa0544960:CDS
CTCATTGATTAACAAAATGA+TGG 0.542701 4_1:+34305576 Msa0544960:CDS
CTGATGATTTCCTGTGATTG+CGG 0.545012 4_1:-34305758 None:intergenic
CAGATTGTTAGTAAAGAAGG+TGG 0.545599 4_1:+34309209 Msa0544960:intron
CATCCTTCCCTGTCTTGGTA+AGG 0.547520 4_1:-34305502 None:intergenic
GCATAGACGCTCTTCTTGAA+AGG 0.547839 4_1:+34308306 Msa0544960:CDS
TCAAGATGCTTTGGCTACCT+CGG 0.548663 4_1:+34307275 Msa0544960:CDS
TGATAGCCTTTGCCAACCAA+AGG 0.548931 4_1:+34306729 Msa0544960:CDS
AACCATCTTGAAAGGGGTCA+TGG 0.552243 4_1:+34309517 Msa0544960:CDS
AGCTCGCAATGACAAGATCT+GGG 0.552792 4_1:+34309541 Msa0544960:CDS
GGCTGCAGCAAAGATAATGT+TGG 0.552915 4_1:+34307924 Msa0544960:CDS
TGAATAGTCTTCGGATAGAA+GGG 0.553340 4_1:-34306485 None:intergenic
GCTACATGGGCATATGAGGT+TGG 0.554220 4_1:+34309263 Msa0544960:CDS
ATCTGCATGCTGGTAGGAGA+AGG 0.557570 4_1:-34307810 None:intergenic
ATTTGGCGATCTTTGGGACG+AGG 0.558705 4_1:-34308116 None:intergenic
TCTTCGGATAGAAGGGCGCC+GGG 0.559520 4_1:-34306478 None:intergenic
TAAGATCCTCAACAATGATA+GGG 0.559960 4_1:-34309304 None:intergenic
TCAAAACTCCATACCTCTCG+TGG 0.560239 4_1:-34305817 None:intergenic
GTTGTTAAAAGATAACTTCG+AGG 0.563438 4_1:+34309235 Msa0544960:CDS
TACCTCGACTAGCATCTGAC+GGG 0.563664 4_1:-34309333 None:intergenic
AGAACTAAGAATGAACAAAA+GGG 0.566204 4_1:-34303851 None:intergenic
AGAATAATTGCATAGGCTGA+TGG 0.566678 4_1:-34310767 None:intergenic
TTAGATCCATTAGCTACTAA+GGG 0.566817 4_1:-34306598 None:intergenic
CTTTGGCTACCTCGGATCAA+AGG 0.566920 4_1:+34307283 Msa0544960:CDS
ACCAAGTTGAACAACCCCAT+GGG 0.567776 4_1:-34306296 None:intergenic
TCACAATAAAGAGACGGTGA+TGG 0.568152 4_1:-34307336 None:intergenic
GAAACAGACTGGGGAATCCA+AGG 0.568580 4_1:+34308382 Msa0544960:CDS
ATCGCGCATAATCTGCATGC+TGG 0.570033 4_1:-34307820 None:intergenic
TAAAAGATAACTTCGAGGGA+GGG 0.573299 4_1:+34309240 Msa0544960:CDS
ATCACCGTCTCTTTATTGTG+AGG 0.576343 4_1:+34307338 Msa0544960:CDS
CTGTCAATGTTGCTGGTCAA+GGG 0.576788 4_1:+34305608 Msa0544960:CDS
TTGTTAAAAGATAACTTCGA+GGG 0.576867 4_1:+34309236 Msa0544960:CDS
AGGACAAAACAAGCAGGGAG+AGG 0.579788 4_1:+34303757 Msa0544960:five_prime_UTR
TCTCTCTCTCTACCGGAGGA+TGG 0.580529 4_1:+34303669 Msa0544960:five_prime_UTR
GGTTTGAGGACAAAACAAGC+AGG 0.580822 4_1:+34303751 Msa0544960:five_prime_UTR
TGAAGCTTTGGTGTGGTCAG+TGG 0.580899 4_1:-34303194 None:intergenic
ACTTTCCTTCCGCAAAACGT+TGG 0.581701 4_1:+34305466 Msa0544960:CDS
ATATTATCGTGACCTACTAC+CGG 0.582068 4_1:-34307624 None:intergenic
TCACTTCAAAGTGTCTTGAG+AGG 0.583968 4_1:+34303359 Msa0544960:five_prime_UTR
TGATCACCTGTTAGATGCTG+TGG 0.584253 4_1:+34307701 Msa0544960:CDS
CTTAACAACCTTGAATCTCG+TGG 0.584423 4_1:+34303552 Msa0544960:five_prime_UTR
ACAACCCCATGGGGAAGCAC+AGG 0.584531 4_1:-34306286 None:intergenic
TTCTCAACTTAGTTCATGGG+TGG 0.587945 4_1:+34307977 Msa0544960:CDS
CCCTAATCCTCTGATTAAGT+CGG 0.588706 4_1:-34309492 None:intergenic
CAGTTTGAGGTAATGACGTG+TGG 0.590928 4_1:-34306571 None:intergenic
CTATCTTCGCAAAGTACAGA+AGG 0.591400 4_1:-34310611 None:intergenic
ATTCTGATGAAATGTCATGT+AGG 0.591662 4_1:+34307754 Msa0544960:CDS
TTATAAATATTAGCTTTGTG+TGG 0.592248 4_1:+34310851 Msa0544960:three_prime_UTR
AACCGTAAAAGGCTTAAACC+TGG 0.592604 4_1:+34308080 Msa0544960:CDS
GGAAGGAAAGTTGACGGCAA+AGG 0.597706 4_1:-34305454 None:intergenic
AAATAGGGATGTAACAAGGA+TGG 0.599726 4_1:+34310341 Msa0544960:CDS
GTACCTCGACTAGCATCTGA+CGG 0.600309 4_1:-34309334 None:intergenic
GGTTAGTAACATCTTTATCG+AGG 0.600887 4_1:-34307407 None:intergenic
AATGAAGCAATATCAGGCAA+TGG 0.600955 4_1:+34307657 Msa0544960:CDS
AGCTTTGGTGTGGTCAGTGG+TGG 0.601953 4_1:-34303191 None:intergenic
GGTATTGGGAGGCAAGGTCA+TGG 0.602037 4_1:+34306928 Msa0544960:CDS
GAATCCCAATTTGTAGTAGT+GGG 0.602477 4_1:+34307058 Msa0544960:CDS
AATTGTGCCTAATGGAGCAA+AGG 0.604460 4_1:+34308169 Msa0544960:CDS
TAATAGAACTTGTTTCCGCA+GGG 0.607242 4_1:-34307896 None:intergenic
TTAACAACCTTGAATCTCGT+GGG 0.609344 4_1:+34303553 Msa0544960:five_prime_UTR
CGGATTGTGAAGCTTTGGTG+TGG 0.610389 4_1:-34303201 None:intergenic
TCCCAATGTCTCAGACTCAG+TGG 0.610926 4_1:+34303246 Msa0544960:five_prime_UTR
CATGTAGGACCACAGTAACA+AGG 0.611360 4_1:+34307769 Msa0544960:CDS
TGTTATGTAGAATACTTGGA+CGG 0.612130 4_1:+34305734 Msa0544960:intron
CTTAGTTCATGGGTGGAGAG+TGG 0.612430 4_1:+34307984 Msa0544960:CDS
ATCATCTATCCTTTGATCCG+AGG 0.615208 4_1:-34307292 None:intergenic
TTAAAAGATAACTTCGAGGG+AGG 0.616882 4_1:+34309239 Msa0544960:CDS
GTACCTTTAGGTGTTAAATG+AGG 0.617694 4_1:+34306127 Msa0544960:intron
GGGTTGTTGAGAAAAGGGAA+GGG 0.618321 4_1:-34303294 None:intergenic
TATTCCTGTGCTTCCCCATG+GGG 0.618640 4_1:+34306282 Msa0544960:CDS
AACCAAGTTGAACAACCCCA+TGG 0.621270 4_1:-34306297 None:intergenic
AGGGTTAACCATCTTGAAAG+GGG 0.622173 4_1:+34309511 Msa0544960:CDS
GTTATGTAGAATACTTGGAC+GGG 0.622917 4_1:+34305735 Msa0544960:intron
TGTACTAATCCTTGTTACTG+TGG 0.622925 4_1:-34307778 None:intergenic
CAGATGCTTTGTGAGGAACG+GGG 0.623790 4_1:+34309452 Msa0544960:intron
ATGCGCGATAATGTTAGCGA+GGG 0.624545 4_1:+34307834 Msa0544960:CDS
GAAATAGCCGACTTAATCAG+AGG 0.625312 4_1:+34309485 Msa0544960:CDS
ATTCTCACAGATGCTTTGTG+AGG 0.626614 4_1:+34309445 Msa0544960:intron
ACTTTCTCTCTCTCTACCGG+AGG 0.628522 4_1:+34303665 Msa0544960:five_prime_UTR
CAACAGAAAACACGATAACA+AGG 0.629695 4_1:-34310915 None:intergenic
GGCAATCGCGAAGAAAATCA+GGG 0.633387 4_1:-34307386 None:intergenic
TTGTTTGCAGATGAATTGGA+TGG 0.635070 4_1:+34307558 Msa0544960:CDS
TTAAACCTGGAGAGAACCCA+AGG 0.635271 4_1:+34308093 Msa0544960:CDS
GTAGGATTTGGACATAAGGG+GGG 0.636521 4_1:+34310732 Msa0544960:three_prime_UTR
TTCTCAGCTAAGGATTCAAG+AGG 0.639698 4_1:+34305540 Msa0544960:CDS
TTACCTTACCAAGACAGGGA+AGG 0.640623 4_1:+34305499 Msa0544960:CDS
TTGATTCTTCATGTCTACAA+CGG 0.641257 4_1:+34306806 Msa0544960:CDS
ATGTCTCAACCGAAAACCGA+TGG 0.641987 4_1:+34306988 Msa0544960:CDS
TGCTCCTCACAATAAAGAGA+CGG 0.642685 4_1:-34307342 None:intergenic
CGGTAGTGGATAATTCGGGA+GGG 0.645908 4_1:-34307131 None:intergenic
CAATCACAGGAAATCATCAG+TGG 0.646791 4_1:+34305761 Msa0544960:CDS
TCTCAACCGAAAACCGATGG+TGG 0.647012 4_1:+34306991 Msa0544960:CDS
TTGGAGCAAACAGCAAAGGG+AGG 0.648602 4_1:+34310390 Msa0544960:CDS
TAATTTACCTTACCAAGACA+GGG 0.649461 4_1:+34305495 Msa0544960:CDS
TCGGTAGTGGATAATTCGGG+AGG 0.649546 4_1:-34307132 None:intergenic
TATGCGCGATAATGTTAGCG+AGG 0.651073 4_1:+34307833 Msa0544960:CDS
GCAGGGAGAGGATCGTGTCG+TGG 0.658900 4_1:+34303769 Msa0544960:five_prime_UTR
TCCCCGTCAGATGCTAGTCG+AGG 0.659873 4_1:+34309331 Msa0544960:CDS
CCAGACCAAGAAAACTAGGT+GGG 0.659995 4_1:-34310471 None:intergenic
GAGATGCTCTTCACTAACTG+CGG 0.664064 4_1:-34310576 None:intergenic
GTTTGAGGACAAAACAAGCA+GGG 0.671345 4_1:+34303752 Msa0544960:five_prime_UTR
AGTCCAATGCCTGTTCTAAG+GGG 0.678929 4_1:+34306643 Msa0544960:CDS
TAAAGATGTATATCCACGAG+AGG 0.683278 4_1:+34305804 Msa0544960:CDS
AGGCAAATAGGGATGTAACA+AGG 0.686758 4_1:+34310337 Msa0544960:intron
TGCGCGATAATGTTAGCGAG+GGG 0.687357 4_1:+34307835 Msa0544960:CDS
TCCAGACCAAGAAAACTAGG+TGG 0.701798 4_1:-34310472 None:intergenic
CCAAGTTGAACAACCCCATG+GGG 0.703250 4_1:-34306295 None:intergenic
GAGGTGTCCATACAGAACTG+TGG 0.706292 4_1:-34306681 None:intergenic
ACCTCGACTAGCATCTGACG+GGG 0.708133 4_1:-34309332 None:intergenic
AAATAAATGGAAGTGAGTGA+GGG 0.715552 4_1:-34303314 None:intergenic
CTTTCAAGTGAAAGACACAC+CGG 0.728252 4_1:+34306514 Msa0544960:CDS
GCGCGATAATGTTAGCGAGG+GGG 0.730545 4_1:+34307836 Msa0544960:CDS
TTTCAACTGGATACTCTAAG+CGG 0.739997 4_1:+34308036 Msa0544960:CDS
TGATAAGCTGAAACAGACTG+GGG 0.763764 4_1:+34308373 Msa0544960:CDS
GGAGGTCAAAACAAGCCCTG+CGG 0.765540 4_1:+34307881 Msa0544960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCTTTAATTAAAACAAAAAA+AGG - chr4_1:34304541-34304560 None:intergenic 10.0%
!!! AAATGACAATATTTTAAAAA+TGG - chr4_1:34308773-34308792 None:intergenic 10.0%
!!! TGAAAATTTGAGATTAAAAA+TGG + chr4_1:34303908-34303927 Msa0544960:exon 15.0%
!!! GAAAATTTGAGATTAAAAAT+GGG + chr4_1:34303909-34303928 Msa0544960:exon 15.0%
!!! AAAATTTGAGATTAAAAATG+GGG + chr4_1:34303910-34303929 Msa0544960:exon 15.0%
!! AAAAAAAGTAGATTTGATTA+GGG + chr4_1:34304090-34304109 Msa0544960:intron 15.0%
!!! TTAAATTTTGAGAAATTTAG+TGG + chr4_1:34304263-34304282 Msa0544960:intron 15.0%
!!! TAAATTTTGAGAAATTTAGT+GGG + chr4_1:34304264-34304283 Msa0544960:intron 15.0%
!!! AATAATAAATTTTCTGTATG+TGG + chr4_1:34305939-34305958 Msa0544960:intron 15.0%
!! TAATAATTCTTGTTAGATAA+TGG + chr4_1:34306399-34306418 Msa0544960:intron 15.0%
!! TGATATGTAATAAATAAATG+TGG - chr4_1:34308226-34308245 None:intergenic 15.0%
!! TATAAAGAATGTAGATATAT+AGG - chr4_1:34308508-34308527 None:intergenic 15.0%
!!! AATAAAAATTACCAACTTTT+GGG + chr4_1:34308529-34308548 Msa0544960:intron 15.0%
!! AATATCAAGGTAATAAATAA+GGG - chr4_1:34308747-34308766 None:intergenic 15.0%
!! AGAAAATTCAATTATTTGAT+TGG - chr4_1:34309052-34309071 None:intergenic 15.0%
!! GTTAAAAAAAAAAGGTAAAT+TGG - chr4_1:34309124-34309143 None:intergenic 15.0%
!!! AAAAGCATGTTAAAAAAAAA+AGG - chr4_1:34309132-34309151 None:intergenic 15.0%
!! CAGATAAAATATATTATTAG+AGG - chr4_1:34309398-34309417 None:intergenic 15.0%
!!! TTTTGAAGGAATATTACAAA+GGG - chr4_1:34303274-34303293 None:intergenic 20.0%
!! AAAAATGGATAAACACAAAA+GGG - chr4_1:34303474-34303493 None:intergenic 20.0%
!! AAAAAATGGATAAACACAAA+AGG - chr4_1:34303475-34303494 None:intergenic 20.0%
!!! AAAAAGGGTATATCAAAAAA+TGG - chr4_1:34303489-34303508 None:intergenic 20.0%
!! AAAAATGGTTAACAGAAAAA+GGG - chr4_1:34303504-34303523 None:intergenic 20.0%
!! AAAAAATGGTTAACAGAAAA+AGG - chr4_1:34303505-34303524 None:intergenic 20.0%
!!! ACCATTTTTTTCATCTAAAA+TGG + chr4_1:34303515-34303534 Msa0544960:five_prime_UTR 20.0%
!!! TCCATTTTAGATGAAAAAAA+TGG - chr4_1:34303519-34303538 None:intergenic 20.0%
!!! ATTTTGAGAAATTAATTCAG+TGG + chr4_1:34304067-34304086 Msa0544960:intron 20.0%
!! GAAAAAAAGTAGATTTGATT+AGG + chr4_1:34304089-34304108 Msa0544960:intron 20.0%
!!! CTTTGTTTTGAAGATTTATT+GGG + chr4_1:34304297-34304316 Msa0544960:intron 20.0%
!! TATAAAAAAGTTCCAAAAAC+AGG - chr4_1:34304475-34304494 None:intergenic 20.0%
!! CTTTATGTTCTTATTGTTAT+TGG + chr4_1:34305080-34305099 Msa0544960:intron 20.0%
!! TAGTTAACTCAAATACAAAT+AGG - chr4_1:34305384-34305403 None:intergenic 20.0%
!! TTAACATTTATCTAATGTCA+CGG + chr4_1:34305890-34305909 Msa0544960:intron 20.0%
!! TTATTAAGAAACAACGAAAA+CGG - chr4_1:34305966-34305985 None:intergenic 20.0%
!! CAAGAATTATTAGAGAAATT+TGG - chr4_1:34306391-34306410 None:intergenic 20.0%
!!! TTGATGATGAATTCATATTA+GGG - chr4_1:34306957-34306976 None:intergenic 20.0%
!!! ATAATAAATTTTACCACCAT+CGG - chr4_1:34307007-34307026 None:intergenic 20.0%
!!! GGATGAATAATAATCTTTTA+AGG + chr4_1:34307079-34307098 Msa0544960:CDS 20.0%
!!! TTTTTGTTTTCTGGAAAAAT+CGG - chr4_1:34307154-34307173 None:intergenic 20.0%
!!! ATGAAAACAAATTTTGAACA+CGG + chr4_1:34307438-34307457 Msa0544960:CDS 20.0%
!! ATTTATTACATATCACATTG+TGG + chr4_1:34308231-34308250 Msa0544960:intron 20.0%
!!! TCATTTTCATTGGTATTTAT+TGG + chr4_1:34308474-34308493 Msa0544960:intron 20.0%
!!! CAATAAAAATTACCAACTTT+TGG + chr4_1:34308528-34308547 Msa0544960:intron 20.0%
!!! ATAAAAATTACCAACTTTTG+GGG + chr4_1:34308530-34308549 Msa0544960:intron 20.0%
!! GAATATCAAGGTAATAAATA+AGG - chr4_1:34308748-34308767 None:intergenic 20.0%
!! TTAAAAATGGAAGAATATCA+AGG - chr4_1:34308760-34308779 None:intergenic 20.0%
!! GTATTAAACAAATAGTTGAT+TGG + chr4_1:34309581-34309600 Msa0544960:intron 20.0%
!!! ATTTAAAATGATGACCAAAT+AGG - chr4_1:34310243-34310262 None:intergenic 20.0%
!! AAAAAGAAGAATAATTGCAT+AGG - chr4_1:34310777-34310796 None:intergenic 20.0%
!!! TTATAAATATTAGCTTTGTG+TGG + chr4_1:34310851-34310870 Msa0544960:three_prime_UTR 20.0%
!!! GTTTTGAAGGAATATTACAA+AGG - chr4_1:34303275-34303294 None:intergenic 25.0%
! GATGTGAAACTGAAAATAAA+TGG - chr4_1:34303330-34303349 None:intergenic 25.0%
!! TATTTTCAGTTTCACATCAA+AGG + chr4_1:34303332-34303351 Msa0544960:five_prime_UTR 25.0%
!! ATTTTCAGTTTCACATCAAA+GGG + chr4_1:34303333-34303352 Msa0544960:five_prime_UTR 25.0%
! AGAACTAAGAATGAACAAAA+GGG - chr4_1:34303854-34303873 None:intergenic 25.0%
!!! AAAGTAAGTAGTTTTGTTCA+AGG + chr4_1:34304019-34304038 Msa0544960:intron 25.0%
!! GTGATTATTTTCTTTTGCTT+TGG + chr4_1:34304044-34304063 Msa0544960:intron 25.0%
!!! TTTTTGGTGTTCTTTGATTT+TGG + chr4_1:34304127-34304146 Msa0544960:intron 25.0%
!!! TTGGATTTTGAGAAATTTAG+TGG + chr4_1:34304146-34304165 Msa0544960:intron 25.0%
!!! TGGATTTTGAGAAATTTAGT+GGG + chr4_1:34304147-34304166 Msa0544960:intron 25.0%
!!! GAAAAGAGTAGTTTTGATTA+GGG + chr4_1:34304170-34304189 Msa0544960:intron 25.0%
!!! TTAATGGTGTTCTTTGATTT+TGG + chr4_1:34304207-34304226 Msa0544960:intron 25.0%
!!! TTGGATTTTGAGAAATTTAG+TGG + chr4_1:34304146-34304165 Msa0544960:intron 25.0%
!!! GCTTTGTTTTGAAGATTTAT+TGG + chr4_1:34304296-34304315 Msa0544960:intron 25.0%
!!! TTTTGAAGATTTATTGGGTT+TGG + chr4_1:34304302-34304321 Msa0544960:intron 25.0%
!!! AGATTTAGATTCTATTTCTG+TGG + chr4_1:34304413-34304432 Msa0544960:intron 25.0%
! ACATAACTAAATTACATGCA+AGG - chr4_1:34304792-34304811 None:intergenic 25.0%
!! TTCTTATTGTTATTGGTGTA+TGG + chr4_1:34305087-34305106 Msa0544960:intron 25.0%
!! TCTTATTGTTATTGGTGTAT+GGG + chr4_1:34305088-34305107 Msa0544960:intron 25.0%
! TTATAGCTTATGTATGAGAA+TGG + chr4_1:34305245-34305264 Msa0544960:intron 25.0%
!! CTCATTGATTAACAAAATGA+TGG + chr4_1:34305576-34305595 Msa0544960:CDS 25.0%
! AATCTCAATAAACAAGGAAA+AGG - chr4_1:34305653-34305672 None:intergenic 25.0%
! GTGACATTAGATAAATGTTA+AGG - chr4_1:34305891-34305910 None:intergenic 25.0%
! AAATATGAATGTTATTGCCA+CGG + chr4_1:34305986-34306005 Msa0544960:intron 25.0%
! AAATATAATGTCGGATAACT+TGG - chr4_1:34306241-34306260 None:intergenic 25.0%
! TGCAAACGAAAATATAATGT+CGG - chr4_1:34306250-34306269 None:intergenic 25.0%
! GAACAATTAGAAAAACTTAC+CGG - chr4_1:34306331-34306350 None:intergenic 25.0%
!!! TGTTAGATAATGGAGAATAT+CGG + chr4_1:34306409-34306428 Msa0544960:intron 25.0%
! AAGAACTTGATCTTTCAATT+GGG + chr4_1:34306448-34306467 Msa0544960:CDS 25.0%
!!! AAATATCTGGTTTAGGTTTT+GGG - chr4_1:34306710-34306729 None:intergenic 25.0%
!!! CTTGATGATGAATTCATATT+AGG - chr4_1:34306958-34306977 None:intergenic 25.0%
!! TTTTCCAGAAAACAAAAAGT+AGG + chr4_1:34307156-34307175 Msa0544960:CDS 25.0%
! TTTCCAGAAAACAAAAAGTA+GGG + chr4_1:34307157-34307176 Msa0544960:CDS 25.0%
!!! AATTTGTTTTCATCATGTGT+TGG - chr4_1:34307431-34307450 None:intergenic 25.0%
! ATAAATGTGGAATGTGATAA+AGG - chr4_1:34308213-34308232 None:intergenic 25.0%
! TTAAATGCCTAACAAAACAA+GGG - chr4_1:34308431-34308450 None:intergenic 25.0%
! ATTAAATGCCTAACAAAACA+AGG - chr4_1:34308432-34308451 None:intergenic 25.0%
! TAGAAAAAAGAATACACCAA+GGG - chr4_1:34309029-34309048 None:intergenic 25.0%
! AAGAATGTTATACCAAAAGT+TGG - chr4_1:34309096-34309115 None:intergenic 25.0%
! GAAAAATAAAGATCAGTTAG+CGG - chr4_1:34309181-34309200 None:intergenic 25.0%
! TTGTTAAAAGATAACTTCGA+GGG + chr4_1:34309236-34309255 Msa0544960:CDS 25.0%
! TGTACAAGATTATAGAGAAT+TGG - chr4_1:34309367-34309386 None:intergenic 25.0%
!! GTCTTGTTAATGATAAACAA+AGG - chr4_1:34310294-34310313 None:intergenic 25.0%
! TTTCTTTCCTGTAATTTGAT+TGG + chr4_1:34310675-34310694 Msa0544960:three_prime_UTR 25.0%
! TTCAGATGTATAGATATTGT+AGG + chr4_1:34310714-34310733 Msa0544960:three_prime_UTR 25.0%
! TGTATAGATATTGTAGGATT+TGG + chr4_1:34310720-34310739 Msa0544960:three_prime_UTR 25.0%
AAATAAATGGAAGTGAGTGA+GGG - chr4_1:34303317-34303336 None:intergenic 30.0%
AAAATAAATGGAAGTGAGTG+AGG - chr4_1:34303318-34303337 None:intergenic 30.0%
AACAGAACATGTTTCTTCTT+TGG + chr4_1:34303816-34303835 Msa0544960:five_prime_UTR 30.0%
CAGAACTAAGAATGAACAAA+AGG - chr4_1:34303855-34303874 None:intergenic 30.0%
!!! TTTCACTTTTTCCAAACCAA+TGG - chr4_1:34303893-34303912 None:intergenic 30.0%
!!! AATGGTCTTATGCTGTTTTT+TGG + chr4_1:34303976-34303995 Msa0544960:CDS 30.0%
!!! TATGCTGTTTTTTGGAAGAT+CGG + chr4_1:34303984-34304003 Msa0544960:CDS 30.0%
!!! GGAAGTGATTTTTTGCTTTT+TGG + chr4_1:34304111-34304130 Msa0544960:intron 30.0%
!! GGATTTTGAGAAATTTAGTG+GGG + chr4_1:34304148-34304167 Msa0544960:intron 30.0%
!!! GGAAAAGAGTAGTTTTGATT+AGG + chr4_1:34304169-34304188 Msa0544960:intron 30.0%
!!! GGAAGTGATTTTTTGCTTAA+TGG + chr4_1:34304191-34304210 Msa0544960:intron 30.0%
! AATGTTGTTGGTGTTTGATT+TGG + chr4_1:34304328-34304347 Msa0544960:intron 30.0%
!!! GTGTTTGATTTGGACTTTTT+TGG + chr4_1:34304338-34304357 Msa0544960:intron 30.0%
!! TTAGATTCTATTTCTGTGGT+TGG + chr4_1:34304417-34304436 Msa0544960:intron 30.0%
CAAAAACAGGAACAAAAATG+TGG - chr4_1:34304462-34304481 None:intergenic 30.0%
! CACATTTTTGTTCCTGTTTT+TGG + chr4_1:34304460-34304479 Msa0544960:intron 30.0%
GTAAGATGCACTTTCTATTT+AGG + chr4_1:34304583-34304602 Msa0544960:intron 30.0%
!! TTAGCTTGTTTGAATCTGTT+TGG + chr4_1:34304646-34304665 Msa0544960:intron 30.0%
! AGAGCATCATAAGTGATTAA+TGG - chr4_1:34304727-34304746 None:intergenic 30.0%
TAATTTACCTTACCAAGACA+GGG + chr4_1:34305495-34305514 Msa0544960:CDS 30.0%
AATAATTCTGTCAATGTTGC+TGG + chr4_1:34305601-34305620 Msa0544960:CDS 30.0%
! TTCCTTGTTTATTGAGATTC+AGG + chr4_1:34305654-34305673 Msa0544960:intron 30.0%
ATCCTGAATCTCAATAAACA+AGG - chr4_1:34305659-34305678 None:intergenic 30.0%
! TTGCTGTTATGTAGAATACT+TGG + chr4_1:34305730-34305749 Msa0544960:intron 30.0%
TGTTATGTAGAATACTTGGA+CGG + chr4_1:34305734-34305753 Msa0544960:intron 30.0%
ATTTCATTCACATATTACCG+TGG - chr4_1:34306006-34306025 None:intergenic 30.0%
ACGGTAATATGTGAATGAAA+TGG + chr4_1:34306005-34306024 Msa0544960:intron 30.0%
! TCTCTATTTTGTGTACCTTT+AGG + chr4_1:34306115-34306134 Msa0544960:intron 30.0%
AACAAGAATTATCAGAGACA+AGG - chr4_1:34306359-34306378 None:intergenic 30.0%
TGTCTCTGATAATTCTTGTT+AGG + chr4_1:34306359-34306378 Msa0544960:intron 30.0%
GTCTCTGATAATTCTTGTTA+GGG + chr4_1:34306360-34306379 Msa0544960:intron 30.0%
GAAGAACTTGATCTTTCAAT+TGG + chr4_1:34306447-34306466 Msa0544960:CDS 30.0%
!! AAGTCTTGTTGAATAGTCTT+CGG - chr4_1:34306497-34306516 None:intergenic 30.0%
TTAGATCCATTAGCTACTAA+GGG - chr4_1:34306601-34306620 None:intergenic 30.0%
!! CAAATATCTGGTTTAGGTTT+TGG - chr4_1:34306711-34306730 None:intergenic 30.0%
TTGATTCTTCATGTCTACAA+CGG + chr4_1:34306806-34306825 Msa0544960:CDS 30.0%
! TTAACTGATTCCAATCTGAA+TGG + chr4_1:34306868-34306887 Msa0544960:CDS 30.0%
!!! TGGTTTTGGTCTTAAACAAA+TGG + chr4_1:34306888-34306907 Msa0544960:CDS 30.0%
!!! AACAAGTCTTTTCAGGTATT+GGG + chr4_1:34306914-34306933 Msa0544960:CDS 30.0%
!! AAAATCGGTAGTGGATAATT+CGG - chr4_1:34307139-34307158 None:intergenic 30.0%
! TGATGATGCTTTAAATCAAC+TGG - chr4_1:34307258-34307277 None:intergenic 30.0%
TTCAAAATGAAACTGCTGAA+TGG + chr4_1:34307522-34307541 Msa0544960:CDS 30.0%
TGCAGAAAAACTGGATAAAA+AGG + chr4_1:34307584-34307603 Msa0544960:CDS 30.0%
CATTTCATCAGAATTCTGAT+TGG - chr4_1:34307748-34307767 None:intergenic 30.0%
ATTCTGATGAAATGTCATGT+AGG + chr4_1:34307754-34307773 Msa0544960:CDS 30.0%
GAAACAAGTTCTATTAGATC+TGG + chr4_1:34307903-34307922 Msa0544960:CDS 30.0%
! ACTAAGTTGAGAACCATATA+TGG - chr4_1:34307970-34307989 None:intergenic 30.0%
!! TTTGATTTGGAAACTTCTTC+TGG - chr4_1:34308062-34308081 None:intergenic 30.0%
TTTCCAAATCAAACCGTAAA+AGG + chr4_1:34308069-34308088 Msa0544960:CDS 30.0%
TGAATCGTTATCATCATAAG+AGG - chr4_1:34308278-34308297 None:intergenic 30.0%
! CAAGAAAAGCATATGTTTGA+TGG - chr4_1:34308333-34308352 None:intergenic 30.0%
AAAACTCGTCACATCAAAAT+GGG - chr4_1:34308455-34308474 None:intergenic 30.0%
! TGACGAGTTTTCATTTTCAT+TGG + chr4_1:34308464-34308483 Msa0544960:intron 30.0%
ATCAAACATGAGATTTAAGC+AGG - chr4_1:34308606-34308625 None:intergenic 30.0%
! TTTAGTTTATCCTATCCCTT+TGG - chr4_1:34308632-34308651 None:intergenic 30.0%
ACTCAGGATAGAAATTACAA+AGG - chr4_1:34308681-34308700 None:intergenic 30.0%
ATATAAAGCTGGATAGAGAT+AGG - chr4_1:34308968-34308987 None:intergenic 30.0%
GTAGAAAAAAGAATACACCA+AGG - chr4_1:34309030-34309049 None:intergenic 30.0%
! TTTTCTATGCATATACATGC+AGG + chr4_1:34309066-34309085 Msa0544960:intron 30.0%
TTTCTATGCATATACATGCA+GGG + chr4_1:34309067-34309086 Msa0544960:intron 30.0%
GTTGTTAAAAGATAACTTCG+AGG + chr4_1:34309235-34309254 Msa0544960:CDS 30.0%
TAAGATCCTCAACAATGATA+GGG - chr4_1:34309307-34309326 None:intergenic 30.0%
TTAAGATCCTCAACAATGAT+AGG - chr4_1:34309308-34309327 None:intergenic 30.0%
TTATGGTAAAAGCTACACTT+TGG - chr4_1:34309748-34309767 None:intergenic 30.0%
CTGACAATGTGTTTATAAGT+GGG + chr4_1:34309840-34309859 Msa0544960:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG + chr4_1:34309841-34309860 Msa0544960:intron 30.0%
TTAAGAGTCTTACATTGGAT+AGG + chr4_1:34310045-34310064 Msa0544960:intron 30.0%
CTGACAATGTGTTTATAAGT+GGG + chr4_1:34309840-34309859 Msa0544960:intron 30.0%
TGACAATGTGTTTATAAGTG+GGG + chr4_1:34309841-34309860 Msa0544960:intron 30.0%
ATTAAGTCTCTTAGAAATCG+TGG - chr4_1:34310150-34310169 None:intergenic 30.0%
TATTGCCAAGTAAAAAACCA+TGG + chr4_1:34310172-34310191 Msa0544960:intron 30.0%
TCTGAATACTTCATCCTATT+TGG + chr4_1:34310226-34310245 Msa0544960:intron 30.0%
CTGCAAAAATTAGAAGTGAA+CGG - chr4_1:34310319-34310338 None:intergenic 30.0%
! TCTAATTTTTGCAGGCAAAT+AGG + chr4_1:34310325-34310344 Msa0544960:intron 30.0%
! CTAATTTTTGCAGGCAAATA+GGG + chr4_1:34310326-34310345 Msa0544960:intron 30.0%
TAAACCATCATGTTATCAAC+TGG - chr4_1:34310435-34310454 None:intergenic 30.0%
ACTAGATTTGATGTCAATCA+TGG - chr4_1:34310521-34310540 None:intergenic 30.0%
!! ATCTAGTCTTATTAGACTTC+AGG + chr4_1:34310534-34310553 Msa0544960:three_prime_UTR 30.0%
TATTGTAGGATTTGGACATA+AGG + chr4_1:34310728-34310747 Msa0544960:three_prime_UTR 30.0%
ATTGTAGGATTTGGACATAA+GGG + chr4_1:34310729-34310748 Msa0544960:three_prime_UTR 30.0%
!!! TTTGACCTTTTTTCCTTTCT+TGG + chr4_1:34310794-34310813 Msa0544960:three_prime_UTR 30.0%
!!! AGAGAAGAGAATGGTTTTGT+CGG - chr4_1:34303224-34303243 None:intergenic 35.0%
TTAACAACCTTGAATCTCGT+GGG + chr4_1:34303553-34303572 Msa0544960:five_prime_UTR 35.0%
!! GAATGCTACTTTGATTCCAT+TGG + chr4_1:34303874-34303893 Msa0544960:five_prime_UTR 35.0%
! CTACTTTGATTCCATTGGTT+TGG + chr4_1:34303879-34303898 Msa0544960:five_prime_UTR 35.0%
TGGGTTTGGATAAATGTTGT+TGG + chr4_1:34304316-34304335 Msa0544960:intron 35.0%
!!! GACTTTTTTGGAAGCAAAAG+TGG + chr4_1:34304350-34304369 Msa0544960:intron 35.0%
!! ATATGTGCTTTTGTTGCTTC+TGG + chr4_1:34304492-34304511 Msa0544960:intron 35.0%
AAGCTGAGCATTTCTACTAA+TGG - chr4_1:34304687-34304706 None:intergenic 35.0%
GTTATGTCTCTGAATCAATC+AGG + chr4_1:34304805-34304824 Msa0544960:intron 35.0%
ATGACCAATCTCCAATCATA+TGG - chr4_1:34305044-34305063 None:intergenic 35.0%
! CTAAGTATGTTTGACTTTGC+AGG + chr4_1:34305401-34305420 Msa0544960:intron 35.0%
CTAATTTACCTTACCAAGAC+AGG + chr4_1:34305494-34305513 Msa0544960:CDS 35.0%
TTGAATCCTTAGCTGAGAAT+CGG - chr4_1:34305539-34305558 None:intergenic 35.0%
GTTATGTAGAATACTTGGAC+GGG + chr4_1:34305735-34305754 Msa0544960:intron 35.0%
TAAAGATGTATATCCACGAG+AGG + chr4_1:34305804-34305823 Msa0544960:CDS 35.0%
GTACCTTTAGGTGTTAAATG+AGG + chr4_1:34306127-34306146 Msa0544960:intron 35.0%
! ATATTTTCGTTTGCAGACAG+TGG + chr4_1:34306255-34306274 Msa0544960:intron 35.0%
TGAATAGTCTTCGGATAGAA+GGG - chr4_1:34306488-34306507 None:intergenic 35.0%
TTGAATAGTCTTCGGATAGA+AGG - chr4_1:34306489-34306508 None:intergenic 35.0%
GTTAGATCCATTAGCTACTA+AGG - chr4_1:34306602-34306621 None:intergenic 35.0%
TATGCAACGAATTACTTGGT+TGG - chr4_1:34306624-34306643 None:intergenic 35.0%
! TTTATTTCTCCCCTTAGAAC+AGG - chr4_1:34306655-34306674 None:intergenic 35.0%
ATAGTTACCACAGTTCTGTA+TGG + chr4_1:34306674-34306693 Msa0544960:CDS 35.0%
! GGCTATCAAATATCTGGTTT+AGG - chr4_1:34306717-34306736 None:intergenic 35.0%
ACGAGAGAATACAACTGTAA+AGG + chr4_1:34306756-34306775 Msa0544960:CDS 35.0%
! GATTCCAATCTGAATGGTTT+TGG + chr4_1:34306874-34306893 Msa0544960:CDS 35.0%
AAGACCAAAACCATTCAGAT+TGG - chr4_1:34306881-34306900 None:intergenic 35.0%
!!! CAACAAGTCTTTTCAGGTAT+TGG + chr4_1:34306913-34306932 Msa0544960:CDS 35.0%
!!! ATTTTACCACCATCGGTTTT+CGG - chr4_1:34307000-34307019 None:intergenic 35.0%
TCTAACAACACTTCACTTCT+TGG + chr4_1:34307033-34307052 Msa0544960:CDS 35.0%
GAATCCCAATTTGTAGTAGT+GGG + chr4_1:34307058-34307077 Msa0544960:CDS 35.0%
TCATCCCACTACTACAAATT+GGG - chr4_1:34307065-34307084 None:intergenic 35.0%
TTCATCCCACTACTACAAAT+TGG - chr4_1:34307066-34307085 None:intergenic 35.0%
!! AAATCGGTAGTGGATAATTC+GGG - chr4_1:34307138-34307157 None:intergenic 35.0%
!! TTTTCTGGAAAAATCGGTAG+TGG - chr4_1:34307148-34307167 None:intergenic 35.0%
!!! AAGCCCTACTTTTTGTTTTC+TGG - chr4_1:34307163-34307182 None:intergenic 35.0%
AGAAAACAAAAAGTAGGGCT+TGG + chr4_1:34307162-34307181 Msa0544960:CDS 35.0%
! AAAGCATCATCAAGATGCTT+TGG + chr4_1:34307266-34307285 Msa0544960:CDS 35.0%
!! AAGGATAGATGATTTGCTTC+AGG + chr4_1:34307302-34307321 Msa0544960:CDS 35.0%
!! AGGATAGATGATTTGCTTCA+GGG + chr4_1:34307303-34307322 Msa0544960:CDS 35.0%
GGTTAGTAACATCTTTATCG+AGG - chr4_1:34307410-34307429 None:intergenic 35.0%
ATCTTGTACGCAACTTTCAT+CGG + chr4_1:34307464-34307483 Msa0544960:CDS 35.0%
!! TGATGACTTGTTTGATGTCT+TGG + chr4_1:34307491-34307510 Msa0544960:CDS 35.0%
!! GATGACTTGTTTGATGTCTT+GGG + chr4_1:34307492-34307511 Msa0544960:CDS 35.0%
TACGTTGTTTGCAGATGAAT+TGG + chr4_1:34307554-34307573 Msa0544960:CDS 35.0%
TTGTTTGCAGATGAATTGGA+TGG + chr4_1:34307558-34307577 Msa0544960:CDS 35.0%
ATATTATCGTGACCTACTAC+CGG - chr4_1:34307627-34307646 None:intergenic 35.0%
CCTGATATTGCTTCATTAAC+AGG - chr4_1:34307654-34307673 None:intergenic 35.0%
CCTGTTAATGAAGCAATATC+AGG + chr4_1:34307651-34307670 Msa0544960:CDS 35.0%
AATGAAGCAATATCAGGCAA+TGG + chr4_1:34307657-34307676 Msa0544960:CDS 35.0%
TGTACTAATCCTTGTTACTG+TGG - chr4_1:34307781-34307800 None:intergenic 35.0%
!!! ATTGTTTGGTTTTCCCAAGA+CGG + chr4_1:34307860-34307879 Msa0544960:CDS 35.0%
! TAATAGAACTTGTTTCCGCA+GGG - chr4_1:34307899-34307918 None:intergenic 35.0%
TCTCAAACCACTTCCATATA+TGG + chr4_1:34307954-34307973 Msa0544960:CDS 35.0%
TTGAGAACCATATATGGAAG+TGG - chr4_1:34307964-34307983 None:intergenic 35.0%
ATGGTTCTCAACTTAGTTCA+TGG + chr4_1:34307973-34307992 Msa0544960:CDS 35.0%
TGGTTCTCAACTTAGTTCAT+GGG + chr4_1:34307974-34307993 Msa0544960:CDS 35.0%
CGTGAAAATAGTGTTTCAAC+TGG + chr4_1:34308023-34308042 Msa0544960:CDS 35.0%
TTTCAACTGGATACTCTAAG+CGG + chr4_1:34308036-34308055 Msa0544960:CDS 35.0%
! AAGCCTTTTACGGTTTGATT+TGG - chr4_1:34308075-34308094 None:intergenic 35.0%
TGAATCATTTGGCGATCTTT+GGG - chr4_1:34308125-34308144 None:intergenic 35.0%
TTGAATCATTTGGCGATCTT+TGG - chr4_1:34308126-34308145 None:intergenic 35.0%
TTACGTGAAATTGTGCCTAA+TGG + chr4_1:34308161-34308180 Msa0544960:CDS 35.0%
!!! TGCAATTCCCTTGTTTTGTT+AGG + chr4_1:34308421-34308440 Msa0544960:intron 35.0%
GAAAACTCGTCACATCAAAA+TGG - chr4_1:34308456-34308475 None:intergenic 35.0%
AGAAATTACAAAGGAGAGTC+AGG - chr4_1:34308672-34308691 None:intergenic 35.0%
TTTCTATCCTGAGTATAAGC+TGG + chr4_1:34308687-34308706 Msa0544960:intron 35.0%
TTCTATCCTGAGTATAAGCT+GGG + chr4_1:34308688-34308707 Msa0544960:intron 35.0%
! TGGGTTAGAAATTATCCTGA+TGG + chr4_1:34308707-34308726 Msa0544960:intron 35.0%
GGGTTAGAAATTATCCTGAT+GGG + chr4_1:34308708-34308727 Msa0544960:intron 35.0%
TTCAAGAAAGTTACCATCTG+CGG + chr4_1:34309154-34309173 Msa0544960:intron 35.0%
GTGCAGATTGTTAGTAAAGA+AGG + chr4_1:34309206-34309225 Msa0544960:intron 35.0%
CAGATTGTTAGTAAAGAAGG+TGG + chr4_1:34309209-34309228 Msa0544960:intron 35.0%
TTAAAAGATAACTTCGAGGG+AGG + chr4_1:34309239-34309258 Msa0544960:CDS 35.0%
TAAAAGATAACTTCGAGGGA+GGG + chr4_1:34309240-34309259 Msa0544960:CDS 35.0%
TTAGGGTTAACCATCTTGAA+AGG + chr4_1:34309509-34309528 Msa0544960:CDS 35.0%
TAGGGTTAACCATCTTGAAA+GGG + chr4_1:34309510-34309529 Msa0544960:CDS 35.0%
CCACTTATAAACACATTGTC+AGG - chr4_1:34309842-34309861 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG + chr4_1:34309839-34309858 Msa0544960:intron 35.0%
GACAATGTGTTTATAAGTGG+GGG + chr4_1:34309842-34309861 Msa0544960:intron 35.0%
TGATACCATCTTAGAAATCG+TGG - chr4_1:34309915-34309934 None:intergenic 35.0%
GTGTGTTAAGAGTCTTACAT+TGG + chr4_1:34310040-34310059 Msa0544960:intron 35.0%
CCACTTATAAACACATTGTC+AGG - chr4_1:34309842-34309861 None:intergenic 35.0%
CCTGACAATGTGTTTATAAG+TGG + chr4_1:34309839-34309858 Msa0544960:intron 35.0%
!!! TACAGCCATGGTTTTTTACT+TGG - chr4_1:34310180-34310199 None:intergenic 35.0%
AACCATGGCTGTAAATATTG+TGG + chr4_1:34310187-34310206 Msa0544960:intron 35.0%
! CGTTCACTTCTAATTTTTGC+AGG + chr4_1:34310317-34310336 Msa0544960:intron 35.0%
AAATAGGGATGTAACAAGGA+TGG + chr4_1:34310341-34310360 Msa0544960:CDS 35.0%
CAACACACCAATCAAATTAC+AGG - chr4_1:34310685-34310704 None:intergenic 35.0%
CTGTAATTTGATTGGTGTGT+TGG + chr4_1:34310683-34310702 Msa0544960:three_prime_UTR 35.0%
TTGTAGGATTTGGACATAAG+GGG + chr4_1:34310730-34310749 Msa0544960:three_prime_UTR 35.0%
AGAATAATTGCATAGGCTGA+TGG - chr4_1:34310770-34310789 None:intergenic 35.0%
CTACTCCAAGAAAGGAAAAA+AGG - chr4_1:34310802-34310821 None:intergenic 35.0%
AAAGATCACTACTCCAAGAA+AGG - chr4_1:34310810-34310829 None:intergenic 35.0%
CAACAGAAAACACGATAACA+AGG - chr4_1:34310918-34310937 None:intergenic 35.0%
!! CTTGTTATCGTGTTTTCTGT+TGG + chr4_1:34310916-34310935 Msa0544960:three_prime_UTR 35.0%
TTTGTCGGATTGTGAAGCTT+TGG - chr4_1:34303209-34303228 None:intergenic 40.0%
ATTGGGAGAAGAGAAGAGAA+TGG - chr4_1:34303233-34303252 None:intergenic 40.0%
!! AGAAAAGGGAAGGGTTTTGA+AGG - chr4_1:34303288-34303307 None:intergenic 40.0%
AGTGAGGGTTGTTGAGAAAA+GGG - chr4_1:34303302-34303321 None:intergenic 40.0%
! TCACTTCAAAGTGTCTTGAG+AGG + chr4_1:34303359-34303378 Msa0544960:five_prime_UTR 40.0%
CGAGATTCAAGGTTGTTAAG+AGG - chr4_1:34303552-34303571 None:intergenic 40.0%
CTTAACAACCTTGAATCTCG+TGG + chr4_1:34303552-34303571 Msa0544960:five_prime_UTR 40.0%
AAACTATCCCACGAGATTCA+AGG - chr4_1:34303563-34303582 None:intergenic 40.0%
TTCACTTTCTCTCTCTCTAC+CGG + chr4_1:34303662-34303681 Msa0544960:five_prime_UTR 40.0%
CTATTGTCAGTTTCTTGCAC+CGG - chr4_1:34303699-34303718 None:intergenic 40.0%
GATCCAGAGAGAAAAAGAAG+TGG + chr4_1:34303727-34303746 Msa0544960:five_prime_UTR 40.0%
GAAAAAGAAGTGGTGGTTTG+AGG + chr4_1:34303737-34303756 Msa0544960:five_prime_UTR 40.0%
GTTTGAGGACAAAACAAGCA+GGG + chr4_1:34303752-34303771 Msa0544960:five_prime_UTR 40.0%
! TGTCGTGGTAGTTAGTTTCT+AGG + chr4_1:34303784-34303803 Msa0544960:five_prime_UTR 40.0%
! CTTTGAAGACTCTTTGTGCT+AGG + chr4_1:34303949-34303968 Msa0544960:CDS 40.0%
CTCTTTGTGCTAGGAATCAA+TGG + chr4_1:34303958-34303977 Msa0544960:CDS 40.0%
TCTCTGAATCAATCAGGAGA+TGG + chr4_1:34304811-34304830 Msa0544960:intron 40.0%
TCAATCAGGAGATGGAATCA+AGG + chr4_1:34304819-34304838 Msa0544960:intron 40.0%
ACTCCAAACAGCCATATGAT+TGG + chr4_1:34305030-34305049 Msa0544960:intron 40.0%
TCTCCAATCATATGGCTGTT+TGG - chr4_1:34305036-34305055 None:intergenic 40.0%
ACAGCCATATGATTGGAGAT+TGG + chr4_1:34305037-34305056 Msa0544960:intron 40.0%
ACTTTGCAGGCTGTTAATCT+GGG + chr4_1:34305414-34305433 Msa0544960:intron 40.0%
! TTTTGCGGAAGGAAAGTTGA+CGG - chr4_1:34305463-34305482 None:intergenic 40.0%
! TTAGACGTTCCAACGTTTTG+CGG - chr4_1:34305478-34305497 None:intergenic 40.0%
TTTCTTCCGATTCTCAGCTA+AGG + chr4_1:34305530-34305549 Msa0544960:CDS 40.0%
TTCTCAGCTAAGGATTCAAG+AGG + chr4_1:34305540-34305559 Msa0544960:CDS 40.0%
CTGATGATTTCCTGTGATTG+CGG - chr4_1:34305761-34305780 None:intergenic 40.0%
CAATCACAGGAAATCATCAG+TGG + chr4_1:34305761-34305780 Msa0544960:CDS 40.0%
ATGTATATCCACGAGAGGTA+TGG + chr4_1:34305809-34305828 Msa0544960:intron 40.0%
GCACCTCATTTAACACCTAA+AGG - chr4_1:34306133-34306152 None:intergenic 40.0%
AATGTCGGATAACTTGGATC+AGG - chr4_1:34306235-34306254 None:intergenic 40.0%
! TCAACTTGGTTCTTTCTTGC+CGG + chr4_1:34306309-34306328 Msa0544960:CDS 40.0%
TTTCAATTGGGACATGTTCC+CGG + chr4_1:34306460-34306479 Msa0544960:CDS 40.0%
! CTTTCAAGTGAAAGACACAC+CGG + chr4_1:34306514-34306533 Msa0544960:CDS 40.0%
AACAGAATCAGTCACAGATC+CGG - chr4_1:34306536-34306555 None:intergenic 40.0%
!! ACGTGTGGATTAGAAGATAC+AGG - chr4_1:34306559-34306578 None:intergenic 40.0%
GGACTATGCAACGAATTACT+TGG - chr4_1:34306628-34306647 None:intergenic 40.0%
ATAGTCCAATGCCTGTTCTA+AGG + chr4_1:34306641-34306660 Msa0544960:CDS 40.0%
TAGTCCAATGCCTGTTCTAA+GGG + chr4_1:34306642-34306661 Msa0544960:CDS 40.0%
!!! TGGTTTAGGTTTTGGGATTG+AGG - chr4_1:34306703-34306722 None:intergenic 40.0%
GGCAAAGGCTATCAAATATC+TGG - chr4_1:34306723-34306742 None:intergenic 40.0%
CATGAAGAATCAAGACTTGC+CGG - chr4_1:34306799-34306818 None:intergenic 40.0%
! ATGGAGCAACAAGTCTTTTC+AGG + chr4_1:34306907-34306926 Msa0544960:CDS 40.0%
!!! AAGTCTTTTCAGGTATTGGG+AGG + chr4_1:34306917-34306936 Msa0544960:CDS 40.0%
AACAACACTTCACTTCTTGG+AGG + chr4_1:34307036-34307055 Msa0544960:CDS 40.0%
GGAATCCCAATTTGTAGTAG+TGG + chr4_1:34307057-34307076 Msa0544960:CDS 40.0%
ATCATCTATCCTTTGATCCG+AGG - chr4_1:34307295-34307314 None:intergenic 40.0%
TCACAATAAAGAGACGGTGA+TGG - chr4_1:34307339-34307358 None:intergenic 40.0%
ATCACCGTCTCTTTATTGTG+AGG + chr4_1:34307338-34307357 Msa0544960:CDS 40.0%
TGCTCCTCACAATAAAGAGA+CGG - chr4_1:34307345-34307364 None:intergenic 40.0%
TCTTGTACGCAACTTTCATC+GGG + chr4_1:34307465-34307484 Msa0544960:CDS 40.0%
TGAAACTGCTGAATGGAAAC+TGG + chr4_1:34307529-34307548 Msa0544960:CDS 40.0%
! CTAATAGAACTTGTTTCCGC+AGG - chr4_1:34307900-34307919 None:intergenic 40.0%
TTCTCAACTTAGTTCATGGG+TGG + chr4_1:34307977-34307996 Msa0544960:CDS 40.0%
AACCGTAAAAGGCTTAAACC+TGG + chr4_1:34308080-34308099 Msa0544960:CDS 40.0%
! CTCCAGGTTTAAGCCTTTTA+CGG - chr4_1:34308085-34308104 None:intergenic 40.0%
TCACGCGATCTTGAATCATT+TGG - chr4_1:34308136-34308155 None:intergenic 40.0%
AATTGTGCCTAATGGAGCAA+AGG + chr4_1:34308169-34308188 Msa0544960:CDS 40.0%
TGTGATAAAGGCCAACAAAG+AGG - chr4_1:34308201-34308220 None:intergenic 40.0%
CTGATAAGCTGAAACAGACT+GGG + chr4_1:34308372-34308391 Msa0544960:CDS 40.0%
TGATAAGCTGAAACAGACTG+GGG + chr4_1:34308373-34308392 Msa0544960:CDS 40.0%
TCTCATGTTTGATGCACCAA+AGG + chr4_1:34308613-34308632 Msa0544960:intron 40.0%
CTCATGTTTGATGCACCAAA+GGG + chr4_1:34308614-34308633 Msa0544960:intron 40.0%
GTCAGGATAGGATAGGAAAA+TGG - chr4_1:34308655-34308674 None:intergenic 40.0%
TTACAAAGGAGAGTCAGGAT+AGG - chr4_1:34308667-34308686 None:intergenic 40.0%
TTCTAACCCAGCTTATACTC+AGG - chr4_1:34308697-34308716 None:intergenic 40.0%
GATGATCTTCTAATCCCATC+AGG - chr4_1:34308725-34308744 None:intergenic 40.0%
ATGCGCACATGATAACAAAC+AGG - chr4_1:34308902-34308921 None:intergenic 40.0%
GGCAGGATATGATATAAAGC+TGG - chr4_1:34308979-34308998 None:intergenic 40.0%
AAAAGATAACTTCGAGGGAG+GGG + chr4_1:34309241-34309260 Msa0544960:CDS 40.0%
ATTCTCACAGATGCTTTGTG+AGG + chr4_1:34309445-34309464 Msa0544960:intron 40.0%
! GAAATAGCCGACTTAATCAG+AGG + chr4_1:34309485-34309504 Msa0544960:CDS 40.0%
CCCTAATCCTCTGATTAAGT+CGG - chr4_1:34309495-34309514 None:intergenic 40.0%
CCGACTTAATCAGAGGATTA+GGG + chr4_1:34309492-34309511 Msa0544960:CDS 40.0%
AGGGTTAACCATCTTGAAAG+GGG + chr4_1:34309511-34309530 Msa0544960:CDS 40.0%
ACATATCCTTAGTGCGTGTT+TGG + chr4_1:34309672-34309691 Msa0544960:intron 40.0%
CCAGTGTGCAATTGTGATTA+TGG - chr4_1:34309765-34309784 None:intergenic 40.0%
CCATAATCACAATTGCACAC+TGG + chr4_1:34309762-34309781 Msa0544960:intron 40.0%
CCATCTTAGAAATCGTGGTT+GGG - chr4_1:34309910-34309929 None:intergenic 40.0%
ACCATCTTAGAAATCGTGGT+TGG - chr4_1:34309911-34309930 None:intergenic 40.0%
TGTTATCAGGTTTCCGCTAT+CGG + chr4_1:34309963-34309982 Msa0544960:intron 40.0%
GTCTTACATTGGATAGGTGA+TGG + chr4_1:34310051-34310070 Msa0544960:intron 40.0%
CTAACATAACCCCACAAAAC+CGG - chr4_1:34310121-34310140 None:intergenic 40.0%
GTCTCTTAGAAATCGTGGTT+GGG - chr4_1:34310145-34310164 None:intergenic 40.0%
AGTCTCTTAGAAATCGTGGT+TGG - chr4_1:34310146-34310165 None:intergenic 40.0%
CACCACAATATTTACAGCCA+TGG - chr4_1:34310192-34310211 None:intergenic 40.0%
AGGCAAATAGGGATGTAACA+AGG + chr4_1:34310337-34310356 Msa0544960:intron 40.0%
! CATGTCACTAGTTCGACTTT+TGG + chr4_1:34310371-34310390 Msa0544960:CDS 40.0%
!!! ACTTTTGGAGCAAACAGCAA+AGG + chr4_1:34310386-34310405 Msa0544960:CDS 40.0%
!!! CTTTTGGAGCAAACAGCAAA+GGG + chr4_1:34310387-34310406 Msa0544960:CDS 40.0%
!! TGCTCCAGTTGATAACATGA+TGG + chr4_1:34310428-34310447 Msa0544960:CDS 40.0%
!! AAGAAAACTAGGTGGGTTGT+GGG - chr4_1:34310467-34310486 None:intergenic 40.0%
CATTCCAGACCAAGAAAACT+AGG - chr4_1:34310478-34310497 None:intergenic 40.0%
CTATCTTCGCAAAGTACAGA+AGG - chr4_1:34310614-34310633 None:intergenic 40.0%
CGAAGATAGCTTGAAGCTTT+AGG + chr4_1:34310625-34310644 Msa0544960:three_prime_UTR 40.0%
TGTAGGATTTGGACATAAGG+GGG + chr4_1:34310731-34310750 Msa0544960:three_prime_UTR 40.0%
GGGTTGTTGAGAAAAGGGAA+GGG - chr4_1:34303297-34303316 None:intergenic 45.0%
AGGGTTGTTGAGAAAAGGGA+AGG - chr4_1:34303298-34303317 None:intergenic 45.0%
GAGTGAGGGTTGTTGAGAAA+AGG - chr4_1:34303303-34303322 None:intergenic 45.0%
! CCACCACTTCTTTTTCTCTC+TGG - chr4_1:34303733-34303752 None:intergenic 45.0%
CCAGAGAGAAAAAGAAGTGG+TGG + chr4_1:34303730-34303749 Msa0544960:five_prime_UTR 45.0%
GGTTTGAGGACAAAACAAGC+AGG + chr4_1:34303751-34303770 Msa0544960:five_prime_UTR 45.0%
CAGGAGATGGAATCAAGGTT+TGG + chr4_1:34304824-34304843 Msa0544960:intron 45.0%
GACTTTGCAGGCTGTTAATC+TGG + chr4_1:34305413-34305432 Msa0544960:intron 45.0%
ACTTTCCTTCCGCAAAACGT+TGG + chr4_1:34305466-34305485 Msa0544960:CDS 45.0%
TTACCTTACCAAGACAGGGA+AGG + chr4_1:34305499-34305518 Msa0544960:CDS 45.0%
TCTGTCAATGTTGCTGGTCA+AGG + chr4_1:34305607-34305626 Msa0544960:CDS 45.0%
CTGTCAATGTTGCTGGTCAA+GGG + chr4_1:34305608-34305627 Msa0544960:CDS 45.0%
TCAAAACTCCATACCTCTCG+TGG - chr4_1:34305820-34305839 None:intergenic 45.0%
! GTGCATTGCCAATTTTCAGC+TGG + chr4_1:34306149-34306168 Msa0544960:CDS 45.0%
CCTGCATTCCAGCTGAAAAT+TGG - chr4_1:34306160-34306179 None:intergenic 45.0%
! CCAATTTTCAGCTGGAATGC+AGG + chr4_1:34306157-34306176 Msa0544960:CDS 45.0%
! TTTTCGTTTGCAGACAGTGG+TGG + chr4_1:34306258-34306277 Msa0544960:intron 45.0%
TTATTCCTGTGCTTCCCCAT+GGG + chr4_1:34306281-34306300 Msa0544960:CDS 45.0%
! ACCAAGTTGAACAACCCCAT+GGG - chr4_1:34306299-34306318 None:intergenic 45.0%
! AACCAAGTTGAACAACCCCA+TGG - chr4_1:34306300-34306319 None:intergenic 45.0%
! CAGTTTGAGGTAATGACGTG+TGG - chr4_1:34306574-34306593 None:intergenic 45.0%
! AGTCCAATGCCTGTTCTAAG+GGG + chr4_1:34306643-34306662 Msa0544960:CDS 45.0%
TGATAGCCTTTGCCAACCAA+AGG + chr4_1:34306729-34306748 Msa0544960:CDS 45.0%
GTATTCTCTCGTTGAGCCTT+TGG - chr4_1:34306748-34306767 None:intergenic 45.0%
!!! TTTTCAGGTATTGGGAGGCA+AGG + chr4_1:34306922-34306941 Msa0544960:CDS 45.0%
ATGTCTCAACCGAAAACCGA+TGG + chr4_1:34306988-34307007 Msa0544960:CDS 45.0%
GCCAATCACATGCATCTAGA+AGG + chr4_1:34307213-34307232 Msa0544960:CDS 45.0%
GCCTTCTAGATGCATGTGAT+TGG - chr4_1:34307217-34307236 None:intergenic 45.0%
TCAAGATGCTTTGGCTACCT+CGG + chr4_1:34307275-34307294 Msa0544960:CDS 45.0%
GGCAATCGCGAAGAAAATCA+GGG - chr4_1:34307389-34307408 None:intergenic 45.0%
AGGCAATCGCGAAGAAAATC+AGG - chr4_1:34307390-34307409 None:intergenic 45.0%
CTTGTTTGATGTCTTGGGCA+TGG + chr4_1:34307497-34307516 Msa0544960:CDS 45.0%
GGATGGCAATGCAGAAAAAC+TGG + chr4_1:34307575-34307594 Msa0544960:CDS 45.0%
! GGCAATGTCTACGAGTTTTC+CGG + chr4_1:34307605-34307624 Msa0544960:CDS 45.0%
! TCTACGAGTTTTCCGGTAGT+AGG + chr4_1:34307612-34307631 Msa0544960:CDS 45.0%
GGTGATCAGTGTTTGTTCCT+GGG - chr4_1:34307689-34307708 None:intergenic 45.0%
AGGTGATCAGTGTTTGTTCC+TGG - chr4_1:34307690-34307709 None:intergenic 45.0%
TGATCACCTGTTAGATGCTG+TGG + chr4_1:34307701-34307720 Msa0544960:CDS 45.0%
CATGTAGGACCACAGTAACA+AGG + chr4_1:34307769-34307788 Msa0544960:CDS 45.0%
TATGCGCGATAATGTTAGCG+AGG + chr4_1:34307833-34307852 Msa0544960:CDS 45.0%
ATGCGCGATAATGTTAGCGA+GGG + chr4_1:34307834-34307853 Msa0544960:CDS 45.0%
!!! CTTGTTTTGACCTCCGTCTT+GGG - chr4_1:34307876-34307895 None:intergenic 45.0%
GGCTGCAGCAAAGATAATGT+TGG + chr4_1:34307924-34307943 Msa0544960:CDS 45.0%
TTAAACCTGGAGAGAACCCA+AGG + chr4_1:34308093-34308112 Msa0544960:CDS 45.0%
GCATAGACGCTCTTCTTGAA+AGG + chr4_1:34308306-34308325 Msa0544960:CDS 45.0%
GCTGATAAGCTGAAACAGAC+TGG + chr4_1:34308371-34308390 Msa0544960:CDS 45.0%
AACAGACGACGTCTTTACCT+TGG - chr4_1:34308402-34308421 None:intergenic 45.0%
ATCAAACGGACCCCAAAAGT+TGG - chr4_1:34308543-34308562 None:intergenic 45.0%
!!! AACTTTTGGGGTCCGTTTGA+TGG + chr4_1:34308542-34308561 Msa0544960:intron 45.0%
! TCCGTTTGATGGTCAGGATA+GGG + chr4_1:34308553-34308572 Msa0544960:intron 45.0%
TCCCTATCCTGACCATCAAA+CGG - chr4_1:34308557-34308576 None:intergenic 45.0%
GTTTGATGCACCAAAGGGAT+AGG + chr4_1:34308619-34308638 Msa0544960:intron 45.0%
AAGGAGAGTCAGGATAGGAT+AGG - chr4_1:34308662-34308681 None:intergenic 45.0%
GTGCGCATCAAACACATGAT+AGG + chr4_1:34308914-34308933 Msa0544960:intron 45.0%
CTCCTATCCTGACCATCAAA+CGG + chr4_1:34309002-34309021 Msa0544960:intron 45.0%
! CATGCAGGGATACCAACTTT+TGG + chr4_1:34309081-34309100 Msa0544960:intron 45.0%
! TGAGGTTGGCTCACAATCAA+TGG + chr4_1:34309277-34309296 Msa0544960:CDS 45.0%
GGTTTGCCCTATCATTGTTG+AGG + chr4_1:34309298-34309317 Msa0544960:CDS 45.0%
ACCTCTTTAACCTGCTTGCT+TGG + chr4_1:34309420-34309439 Msa0544960:intron 45.0%
ACCAAGCAAGCAGGTTAAAG+AGG - chr4_1:34309424-34309443 None:intergenic 45.0%
GTGAGAATAACCAAGCAAGC+AGG - chr4_1:34309433-34309452 None:intergenic 45.0%
CACAGATGCTTTGTGAGGAA+CGG + chr4_1:34309450-34309469 Msa0544960:intron 45.0%
ACAGATGCTTTGTGAGGAAC+GGG + chr4_1:34309451-34309470 Msa0544960:intron 45.0%
! GCCGACTTAATCAGAGGATT+AGG + chr4_1:34309491-34309510 Msa0544960:CDS 45.0%
AACCATCTTGAAAGGGGTCA+TGG + chr4_1:34309517-34309536 Msa0544960:CDS 45.0%
TTCCATGACCCCTTTCAAGA+TGG - chr4_1:34309522-34309541 None:intergenic 45.0%
AAGCTCGCAATGACAAGATC+TGG + chr4_1:34309540-34309559 Msa0544960:CDS 45.0%
AGCTCGCAATGACAAGATCT+GGG + chr4_1:34309541-34309560 Msa0544960:CDS 45.0%
TCCTTAGTGCGTGTTTGGAT+TGG + chr4_1:34309677-34309696 Msa0544960:intron 45.0%
!! GTTTGGATTGGCAGTGAGTT+TGG + chr4_1:34309689-34309708 Msa0544960:intron 45.0%
!! ACCTCACAAGCCAGTTTTGT+GGG + chr4_1:34309873-34309892 Msa0544960:intron 45.0%
CTAACACAACCCCACAAAAC+TGG - chr4_1:34309886-34309905 None:intergenic 45.0%
!! CAGTTTTGTGGGGTTGTGTT+AGG + chr4_1:34309884-34309903 Msa0544960:intron 45.0%
! CCCAACCACGATTTCTAAGA+TGG + chr4_1:34309907-34309926 Msa0544960:intron 45.0%
ATAGCCTCTCCAAGATCCAT+TGG + chr4_1:34309934-34309953 Msa0544960:intron 45.0%
TAGCCTCTCCAAGATCCATT+GGG + chr4_1:34309935-34309954 Msa0544960:intron 45.0%
!! GATAGCGGAAACCTGATAAC+AGG - chr4_1:34309964-34309983 None:intergenic 45.0%
GTTATCAGGTTTCCGCTATC+GGG + chr4_1:34309964-34309983 Msa0544960:intron 45.0%
GGTTCGTGGACATAAATGGT+GGG - chr4_1:34309993-34310012 None:intergenic 45.0%
TGGTTCGTGGACATAAATGG+TGG - chr4_1:34309994-34310013 None:intergenic 45.0%
! GCTTGGTTCGTGGACATAAA+TGG - chr4_1:34309997-34310016 None:intergenic 45.0%
!! CGGTTTTGTGGGGTTATGTT+AGG + chr4_1:34310119-34310138 Msa0544960:intron 45.0%
!! CAAGAAAACTAGGTGGGTTG+TGG - chr4_1:34310468-34310487 None:intergenic 45.0%
!! CACAACCCACCTAGTTTTCT+TGG + chr4_1:34310466-34310485 Msa0544960:exon 45.0%
CCAGACCAAGAAAACTAGGT+GGG - chr4_1:34310474-34310493 None:intergenic 45.0%
TCCAGACCAAGAAAACTAGG+TGG - chr4_1:34310475-34310494 None:intergenic 45.0%
GAGATGCTCTTCACTAACTG+CGG - chr4_1:34310579-34310598 None:intergenic 45.0%
GTAGGATTTGGACATAAGGG+GGG + chr4_1:34310732-34310751 Msa0544960:three_prime_UTR 45.0%
TTTGGACATAAGGGGGGTTA+AGG + chr4_1:34310738-34310757 Msa0544960:three_prime_UTR 45.0%
!!! TACTATTATTTTAAAATTTA+TGG - chr4_1:34304922-34304941 None:intergenic 5.0%
!! TTAATTAAATATTGTAAAAA+TGG - chr4_1:34308842-34308861 None:intergenic 5.0%
! TGAAGCTTTGGTGTGGTCAG+TGG - chr4_1:34303197-34303216 None:intergenic 50.0%
! CGGATTGTGAAGCTTTGGTG+TGG - chr4_1:34303204-34303223 None:intergenic 50.0%
TCCCAATGTCTCAGACTCAG+TGG + chr4_1:34303246-34303265 Msa0544960:five_prime_UTR 50.0%
! GCCACTGAGTCTGAGACATT+GGG - chr4_1:34303250-34303269 None:intergenic 50.0%
! AGCCACTGAGTCTGAGACAT+TGG - chr4_1:34303251-34303270 None:intergenic 50.0%
ACTTTCTCTCTCTCTACCGG+AGG + chr4_1:34303665-34303684 Msa0544960:five_prime_UTR 50.0%
TCTACCGGAGGATGGAATTC+CGG + chr4_1:34303677-34303696 Msa0544960:five_prime_UTR 50.0%
AGGACAAAACAAGCAGGGAG+AGG + chr4_1:34303757-34303776 Msa0544960:five_prime_UTR 50.0%
GGAAGGAAAGTTGACGGCAA+AGG - chr4_1:34305457-34305476 None:intergenic 50.0%
! ACGTTCCAACGTTTTGCGGA+AGG - chr4_1:34305474-34305493 None:intergenic 50.0%
CATCCTTCCCTGTCTTGGTA+AGG - chr4_1:34305505-34305524 None:intergenic 50.0%
CAATGTTGCTGGTCAAGGGT+TGG + chr4_1:34305612-34305631 Msa0544960:intron 50.0%
GTTATTCCTGTGCTTCCCCA+TGG + chr4_1:34306280-34306299 Msa0544960:CDS 50.0%
TATTCCTGTGCTTCCCCATG+GGG + chr4_1:34306282-34306301 Msa0544960:CDS 50.0%
! CCAAGTTGAACAACCCCATG+GGG - chr4_1:34306298-34306317 None:intergenic 50.0%
! TACTAAGGGAGCGCAGTTTG+AGG - chr4_1:34306587-34306606 None:intergenic 50.0%
TGCGCTCCCTTAGTAGCTAA+TGG + chr4_1:34306592-34306611 Msa0544960:CDS 50.0%
TCTCCCCTTAGAACAGGCAT+TGG - chr4_1:34306649-34306668 None:intergenic 50.0%
! GAGGTGTCCATACAGAACTG+TGG - chr4_1:34306684-34306703 None:intergenic 50.0%
GTTGAGCCTTTGGTTGGCAA+AGG - chr4_1:34306738-34306757 None:intergenic 50.0%
TCTCTCGTTGAGCCTTTGGT+TGG - chr4_1:34306744-34306763 None:intergenic 50.0%
GGCTGAAGCTGAAGTGATAC+CGG + chr4_1:34306777-34306796 Msa0544960:CDS 50.0%
TCTCAACCGAAAACCGATGG+TGG + chr4_1:34306991-34307010 Msa0544960:CDS 50.0%
!! CGGTAGTGGATAATTCGGGA+GGG - chr4_1:34307134-34307153 None:intergenic 50.0%
!! TCGGTAGTGGATAATTCGGG+AGG - chr4_1:34307135-34307154 None:intergenic 50.0%
CTTTGGCTACCTCGGATCAA+AGG + chr4_1:34307283-34307302 Msa0544960:CDS 50.0%
!! GAGACGGTGATGGAATCTTC+AGG - chr4_1:34307329-34307348 None:intergenic 50.0%
! TCAGGCAATGGCATTTTCCC+AGG + chr4_1:34307669-34307688 Msa0544960:CDS 50.0%
TCGAGACCACAGCATCTAAC+AGG - chr4_1:34307710-34307729 None:intergenic 50.0%
ATCTGCATGCTGGTAGGAGA+AGG - chr4_1:34307813-34307832 None:intergenic 50.0%
CGCATAATCTGCATGCTGGT+AGG - chr4_1:34307819-34307838 None:intergenic 50.0%
ATCGCGCATAATCTGCATGC+TGG - chr4_1:34307823-34307842 None:intergenic 50.0%
TGCGCGATAATGTTAGCGAG+GGG + chr4_1:34307835-34307854 Msa0544960:CDS 50.0%
!!! GTTTGGTTTTCCCAAGACGG+AGG + chr4_1:34307863-34307882 Msa0544960:CDS 50.0%
!!! GCTTGTTTTGACCTCCGTCT+TGG - chr4_1:34307877-34307896 None:intergenic 50.0%
CTTAGTTCATGGGTGGAGAG+TGG + chr4_1:34307984-34308003 Msa0544960:CDS 50.0%
!! ATTTGGCGATCTTTGGGACG+AGG - chr4_1:34308119-34308138 None:intergenic 50.0%
GAAACAGACTGGGGAATCCA+AGG + chr4_1:34308382-34308401 Msa0544960:CDS 50.0%
! GTCCGTTTGATGGTCAGGAT+AGG + chr4_1:34308552-34308571 Msa0544960:intron 50.0%
TGATGGTCAGGATAGGAGAG+AGG - chr4_1:34309000-34309019 None:intergenic 50.0%
! GTCCGTTTGATGGTCAGGAT+AGG - chr4_1:34308552-34308571 None:intergenic 50.0%
TACACCAAGGGTCCGTTTGA+TGG - chr4_1:34309017-34309036 None:intergenic 50.0%
GCTACATGGGCATATGAGGT+TGG + chr4_1:34309263-34309282 Msa0544960:CDS 50.0%
TACCTCGACTAGCATCTGAC+GGG - chr4_1:34309336-34309355 None:intergenic 50.0%
GTACCTCGACTAGCATCTGA+CGG - chr4_1:34309337-34309356 None:intergenic 50.0%
CAGATGCTTTGTGAGGAACG+GGG + chr4_1:34309452-34309471 Msa0544960:intron 50.0%
GCCAATCCAAACACGCACTA+AGG - chr4_1:34309681-34309700 None:intergenic 50.0%
CCTATCCGATGTGAGACGAT+TGG - chr4_1:34309813-34309832 None:intergenic 50.0%
CCAATCGTCTCACATCGGAT+AGG + chr4_1:34309810-34309829 Msa0544960:intron 50.0%
GTCTCACATCGGATAGGTGA+TGG + chr4_1:34309816-34309835 Msa0544960:intron 50.0%
!! CAAAACTGGCTTGTGAGGTG+AGG - chr4_1:34309872-34309891 None:intergenic 50.0%
! CACCTCACAAGCCAGTTTTG+TGG + chr4_1:34309872-34309891 Msa0544960:intron 50.0%
!! CCTCACAAGCCAGTTTTGTG+GGG + chr4_1:34309874-34309893 Msa0544960:intron 50.0%
AGCGGAAACCTGATAACAGG+TGG - chr4_1:34309961-34309980 None:intergenic 50.0%
! TCGTGGACATAAATGGTGGG+TGG - chr4_1:34309990-34310009 None:intergenic 50.0%
ACAATCCTCACCTCACAAGC+CGG + chr4_1:34310099-34310118 Msa0544960:intron 50.0%
!! ACCTCACAAGCCGGTTTTGT+GGG + chr4_1:34310108-34310127 Msa0544960:intron 50.0%
TTGGAGCAAACAGCAAAGGG+AGG + chr4_1:34310390-34310409 Msa0544960:CDS 50.0%
!! CCCACCTAGTTTTCTTGGTC+TGG + chr4_1:34310471-34310490 Msa0544960:exon 50.0%
TCTCTCTCTCTACCGGAGGA+TGG + chr4_1:34303669-34303688 Msa0544960:five_prime_UTR 55.0%
TGCACCGGAATTCCATCCTC+CGG - chr4_1:34303684-34303703 None:intergenic 55.0%
ACCAAGACAGGGAAGGATGC+TGG + chr4_1:34305506-34305525 Msa0544960:CDS 55.0%
ACCAGCATCCTTCCCTGTCT+TGG - chr4_1:34305510-34305529 None:intergenic 55.0%
AGAGCAGCACTCGAGTGAGA+TGG - chr4_1:34305710-34305729 None:intergenic 55.0%
CCCCATGGGGTTGTTCAACT+TGG + chr4_1:34306295-34306314 Msa0544960:CDS 55.0%
! GGTATTGGGAGGCAAGGTCA+TGG + chr4_1:34306928-34306947 Msa0544960:CDS 55.0%
GCGCGATAATGTTAGCGAGG+GGG + chr4_1:34307836-34307855 Msa0544960:CDS 55.0%
!! GTTAGCGAGGGGGCATTGTT+TGG + chr4_1:34307846-34307865 Msa0544960:CDS 55.0%
GGAGGTCAAAACAAGCCCTG+CGG + chr4_1:34307881-34307900 Msa0544960:CDS 55.0%
!! GATCTTTGGGACGAGGCCTT+GGG - chr4_1:34308112-34308131 None:intergenic 55.0%
! TTGGGGTCCGTTTGATGGTC+AGG + chr4_1:34308547-34308566 Msa0544960:intron 55.0%
GATGGTCAGGATAGGGAGAC+AGG + chr4_1:34308560-34308579 Msa0544960:intron 55.0%
! CAAGGGTCCGTTTGATGGTC+AGG - chr4_1:34309012-34309031 None:intergenic 55.0%
CTGACCATCAAACGGACCCT+TGG + chr4_1:34309010-34309029 Msa0544960:intron 55.0%
! ATCAGTTAGCGGACCGCAGA+TGG - chr4_1:34309170-34309189 None:intergenic 55.0%
AGGGGCTACATGGGCATATG+AGG + chr4_1:34309259-34309278 Msa0544960:CDS 55.0%
ACCTCGACTAGCATCTGACG+GGG - chr4_1:34309335-34309354 None:intergenic 55.0%
! CTGGGCACGCTTTTCTGTTG+AGG + chr4_1:34309559-34309578 Msa0544960:CDS 55.0%
GAGACGATTGGCGAGGAGTT+CGG - chr4_1:34309801-34309820 None:intergenic 55.0%
CCTCGCCAATCGTCTCACAT+CGG + chr4_1:34309805-34309824 Msa0544960:intron 55.0%
!! CCCCACAAAACTGGCTTGTG+AGG - chr4_1:34309877-34309896 None:intergenic 55.0%
TGGCCCAATGGATCTTGGAG+AGG - chr4_1:34309941-34309960 None:intergenic 55.0%
ACAGGTGGCCCAATGGATCT+TGG - chr4_1:34309946-34309965 None:intergenic 55.0%
CCTGATAACAGGTGGCCCAA+TGG - chr4_1:34309953-34309972 None:intergenic 55.0%
CCATTGGGCCACCTGTTATC+AGG + chr4_1:34309950-34309969 Msa0544960:intron 55.0%
! GCACTATTGGGCTTGGTTCG+TGG - chr4_1:34310007-34310026 None:intergenic 55.0%
CGAACCAAGCCCAATAGTGC+TGG + chr4_1:34310007-34310026 Msa0544960:intron 55.0%
ACGACCAGCACTATTGGGCT+TGG - chr4_1:34310014-34310033 None:intergenic 55.0%
CCCTCACGACCAGCACTATT+GGG - chr4_1:34310019-34310038 None:intergenic 55.0%
!! CCCAATAGTGCTGGTCGTGA+GGG + chr4_1:34310016-34310035 Msa0544960:intron 55.0%
!! CCAATAGTGCTGGTCGTGAG+GGG + chr4_1:34310017-34310036 Msa0544960:intron 55.0%
!! CAATAGTGCTGGTCGTGAGG+GGG + chr4_1:34310018-34310037 Msa0544960:intron 55.0%
!! CAAAACCGGCTTGTGAGGTG+AGG - chr4_1:34310107-34310126 None:intergenic 55.0%
!! CACCTCACAAGCCGGTTTTG+TGG + chr4_1:34310107-34310126 Msa0544960:intron 55.0%
!! CCTCACAAGCCGGTTTTGTG+GGG + chr4_1:34310109-34310128 Msa0544960:intron 55.0%
! ACAACCCCATGGGGAAGCAC+AGG - chr4_1:34306289-34306308 None:intergenic 60.0%
!! TCTTCGGATAGAAGGGCGCC+GGG - chr4_1:34306481-34306500 None:intergenic 60.0%
! GTCTTCGGATAGAAGGGCGC+CGG - chr4_1:34306482-34306501 None:intergenic 60.0%
!! CGATCTTTGGGACGAGGCCT+TGG - chr4_1:34308113-34308132 None:intergenic 60.0%
GGTCAGGATAGGAGAGAGGC+AGG - chr4_1:34308996-34309015 None:intergenic 60.0%
ACTTCGAGGGAGGGGCTACA+TGG + chr4_1:34309249-34309268 Msa0544960:CDS 60.0%
CTTCGAGGGAGGGGCTACAT+GGG + chr4_1:34309250-34309269 Msa0544960:CDS 60.0%
TCCCCGTCAGATGCTAGTCG+AGG + chr4_1:34309331-34309350 Msa0544960:CDS 60.0%
CCGATGTGAGACGATTGGCG+AGG - chr4_1:34309808-34309827 None:intergenic 60.0%
!! AATGGTGGGTGGCCCGATAG+CGG - chr4_1:34309979-34309998 None:intergenic 60.0%
!! GCCCAATAGTGCTGGTCGTG+AGG + chr4_1:34310015-34310034 Msa0544960:intron 60.0%
CCCCTCACGACCAGCACTAT+TGG - chr4_1:34310020-34310039 None:intergenic 60.0%
!! CCCCACAAAACCGGCTTGTG+AGG - chr4_1:34310112-34310131 None:intergenic 60.0%
GCAGGGAGAGGATCGTGTCG+TGG + chr4_1:34303769-34303788 Msa0544960:five_prime_UTR 65.0%
CTTGGACGGGCCGCAATCAC+AGG + chr4_1:34305748-34305767 Msa0544960:CDS 65.0%
CGAGGCCTTGGGTTCTCTCC+AGG - chr4_1:34308101-34308120 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 34303193 34310944 34303193 ID=Msa0544960;Name=Msa0544960
chr4_1 mRNA 34303193 34310944 34303193 ID=Msa0544960-mRNA-1;Parent=Msa0544960;Name=Msa0544960-mRNA-1;_AED=0.05;_eAED=0.05;_QI=734|1|1|1|1|1|10|465|923
chr4_1 exon 34303193 34304021 34303193 ID=Msa0544960-mRNA-1:exon:8733;Parent=Msa0544960-mRNA-1
chr4_1 exon 34305423 34305629 34305423 ID=Msa0544960-mRNA-1:exon:8734;Parent=Msa0544960-mRNA-1
chr4_1 exon 34305744 34305825 34305744 ID=Msa0544960-mRNA-1:exon:8735;Parent=Msa0544960-mRNA-1
chr4_1 exon 34306137 34306178 34306137 ID=Msa0544960-mRNA-1:exon:8736;Parent=Msa0544960-mRNA-1
chr4_1 exon 34306271 34306330 34306271 ID=Msa0544960-mRNA-1:exon:8737;Parent=Msa0544960-mRNA-1
chr4_1 exon 34306415 34308190 34306415 ID=Msa0544960-mRNA-1:exon:8738;Parent=Msa0544960-mRNA-1
chr4_1 exon 34308302 34308403 34308302 ID=Msa0544960-mRNA-1:exon:8739;Parent=Msa0544960-mRNA-1
chr4_1 exon 34309212 34309352 34309212 ID=Msa0544960-mRNA-1:exon:8740;Parent=Msa0544960-mRNA-1
chr4_1 exon 34309455 34309580 34309455 ID=Msa0544960-mRNA-1:exon:8741;Parent=Msa0544960-mRNA-1
chr4_1 exon 34310339 34310944 34310339 ID=Msa0544960-mRNA-1:exon:8742;Parent=Msa0544960-mRNA-1
chr4_1 five_prime_UTR 34303193 34303926 34303193 ID=Msa0544960-mRNA-1:five_prime_utr;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34303927 34304021 34303927 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34305423 34305629 34305423 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34305744 34305825 34305744 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34306137 34306178 34306137 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34306271 34306330 34306271 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34306415 34308190 34306415 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34308302 34308403 34308302 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34309212 34309352 34309212 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34309455 34309580 34309455 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 CDS 34310339 34310479 34310339 ID=Msa0544960-mRNA-1:cds;Parent=Msa0544960-mRNA-1
chr4_1 three_prime_UTR 34310480 34310944 34310480 ID=Msa0544960-mRNA-1:three_prime_utr;Parent=Msa0544960-mRNA-1
Gene Sequence

>Msa0544960

ATGGGGTTTTTGTTGAAAGAAGCTTTGAAGACTCTTTGTGCTAGGAATCAATGGTCTTATGCTGTTTTTTGGAAGATCGGTTGCAATAATTCAAAGCTGTTAATCTGGGAAGATTGCTACTATGAACCTTTGCCGTCAACTTTCCTTCCGCAAAACGTTGGAACGTCTAATTTACCTTACCAAGACAGGGAAGGATGCTGGTTTTCTTCCGATTCTCAGCTAAGGATTCAAGAGGACGACAGAGTCTGCTCATTGATTAACAAAATGATGGTGAATAATTCTGTCAATGTTGCTGGTCAAGGAATACTTGGACGGGCCGCAATCACAGGAAATCATCAGTGGATTCTTTTGAACAATTTCATTAAAGATGTATATCCACGAGAGGTGTTAAATGAGGTGCATTGCCAATTTTCAGCTGGAATGCAGACAGTGGTGGTTATTCCTGTGCTTCCCCATGGGGTTGTTCAACTTGGTTCTTTCTTGCCGATAATGGAGAATATCGGATTTGTGAATGATGTGAAGAACTTGATCTTTCAATTGGGACATGTTCCCGGCGCCCTTCTATCCGAAGACTATTCAACAAGACTTTCAAGTGAAAGACACACCGGATCTGTGACTGATTCTGTTCCTGTATCTTCTAATCCACACGTCATTACCTCAAACTGCGCTCCCTTAGTAGCTAATGGATCTAACCAACCAAGTAATTCGTTGCATAGTCCAATGCCTGTTCTAAGGGGAGAAATAAATAGTTACCACAGTTCTGTATGGACACCTCAATCCCAAAACCTAAACCAGATATTTGATAGCCTTTGCCAACCAAAGGCTCAACGAGAGAATACAACTGTAAAGGCTGAAGCTGAAGTGATACCGGCAAGTCTTGATTCTTCATGTCTACAACGGCGTTCTGTTTCTTATAACGCAAGATCTGCACTCAATGAATTAACTGATTCCAATCTGAATGGTTTTGGTCTTAAACAAATGGAGCAACAAGTCTTTTCAGGTATTGGGAGGCAAGGTCATGGTTACCCTAATATGAATTCATCATCAAGTGTCTTCAATATGTCTCAACCGAAAACCGATGGTGGTAAAATTTATTATCAGAATTCTAACAACACTTCACTTCTTGGAGGAATCCCAATTTGTAGTAGTGGGATGAATAATAATCTTTTAAGGACAAATATGATTAACTGCTCAGTTTCAAACCCTCCCGAATTATCCACTACCGATTTTTCCAGAAAACAAAAAGTAGGGCTTGGAATTCAAAACAATAATTCAACTAAAGCTGCCAATCACATGCATCTAGAAGGCTCTTATCAGAAGAATCTTCCAGTTGATTTAAAGCATCATCAAGATGCTTTGGCTACCTCGGATCAAAGGATAGATGATTTGCTTCAGGGCCTGAAGATTCCATCACCGTCTCTTTATTGTGAGGAGCATGTGTCTATGAATGATCACATCCCTGATTTTCTTCGCGATTGCCTCGATAAAGATGTTACTAACCAACACATGATGAAAACAAATTTTGAACACGGAGAATCTTGTACGCAACTTTCATCGGGCGATGATGACTTGTTTGATGTCTTGGGCATGGACTTCAAAATGAAACTGCTGAATGGAAACTGGAATACGTTGTTTGCAGATGAATTGGATGGCAATGCAGAAAAACTGGATAAAAAGGCAATGTCTACGAGTTTTCCGGTAGTAGGTCACGATAATATTTATCCTGTTAATGAAGCAATATCAGGCAATGGCATTTTCCCAGGAACAAACACTGATCACCTGTTAGATGCTGTGGTCTCGAAGACTCAATCTGTTTCCAATCAGAATTCTGATGAAATGTCATGTAGGACCACAGTAACAAGGATTAGTACAGCATCTGTACCTTCTCCTACCAGCATGCAGATTATGCGCGATAATGTTAGCGAGGGGGCATTGTTTGGTTTTCCCAAGACGGAGGTCAAAACAAGCCCTGCGGAAACAAGTTCTATTAGATCTGGCTGCAGCAAAGATAATGTTGGAAACTGTTCTCAAACCACTTCCATATATGGTTCTCAACTTAGTTCATGGGTGGAGAGTGGTAGCAGCAATGTGAAGCGTGAAAATAGTGTTTCAACTGGATACTCTAAGCGGCCAGAAGAAGTTTCCAAATCAAACCGTAAAAGGCTTAAACCTGGAGAGAACCCAAGGCCTCGTCCCAAAGATCGCCAAATGATTCAAGATCGCGTGAAAGAGTTACGTGAAATTGTGCCTAATGGAGCAAAGTGTAGCATAGACGCTCTTCTTGAAAGGACCATCAAACATATGCTTTTCTTGCAAAGTGTAACAAAGCATGCTGATAAGCTGAAACAGACTGGGGAATCCAAGATTGTTAGTAAAGAAGGTGGATTGTTGTTAAAAGATAACTTCGAGGGAGGGGCTACATGGGCATATGAGGTTGGCTCACAATCAATGGTTTGCCCTATCATTGTTGAGGATCTTAATCATCCCCGTCAGATGCTAGTCGAGATGCTTTGTGAGGAACGGGGTTTCTTTCTTGAAATAGCCGACTTAATCAGAGGATTAGGGTTAACCATCTTGAAAGGGGTCATGGAAGCTCGCAATGACAAGATCTGGGCACGCTTTTCTGTTGAGGCAAATAGGGATGTAACAAGGATGGAAATATTCATGTCACTAGTTCGACTTTTGGAGCAAACAGCAAAGGGAGGCGCAGCTTCATCAAATGCTCCAGTTGATAACATGATGGTTTATCATTCTATCCCACAACCCACCTAG
Protein sequence

>Msa0544960

MGFLLKEALKTLCARNQWSYAVFWKIGCNNSKLLIWEDCYYEPLPSTFLPQNVGTSNLPYQDREGCWFSSDSQLRIQEDDRVCSLINKMMVNNSVNVAGQGILGRAAITGNHQWILLNNFIKDVYPREVLNEVHCQFSAGMQTVVVIPVLPHGVVQLGSFLPIMENIGFVNDVKNLIFQLGHVPGALLSEDYSTRLSSERHTGSVTDSVPVSSNPHVITSNCAPLVANGSNQPSNSLHSPMPVLRGEINSYHSSVWTPQSQNLNQIFDSLCQPKAQRENTTVKAEAEVIPASLDSSCLQRRSVSYNARSALNELTDSNLNGFGLKQMEQQVFSGIGRQGHGYPNMNSSSSVFNMSQPKTDGGKIYYQNSNNTSLLGGIPICSSGMNNNLLRTNMINCSVSNPPELSTTDFSRKQKVGLGIQNNNSTKAANHMHLEGSYQKNLPVDLKHHQDALATSDQRIDDLLQGLKIPSPSLYCEEHVSMNDHIPDFLRDCLDKDVTNQHMMKTNFEHGESCTQLSSGDDDLFDVLGMDFKMKLLNGNWNTLFADELDGNAEKLDKKAMSTSFPVVGHDNIYPVNEAISGNGIFPGTNTDHLLDAVVSKTQSVSNQNSDEMSCRTTVTRISTASVPSPTSMQIMRDNVSEGALFGFPKTEVKTSPAETSSIRSGCSKDNVGNCSQTTSIYGSQLSSWVESGSSNVKRENSVSTGYSKRPEEVSKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGAKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNHPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMEARNDKIWARFSVEANRDVTRMEIFMSLVRLLEQTAKGGAASSNAPVDNMMVYHSIPQPT*