Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641880 | XP_013455842.1 | 96.795 | 156 | 5 | 0 | 1 | 156 | 243 | 398 | 2.05e-104 | 317 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641880 | sp|Q93ZB9|FACR3_ARATH | 62.179 | 156 | 58 | 1 | 1 | 156 | 247 | 401 | 2.51e-65 | 209 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0641880 | Msa1345810 | 0.800172 | 1.632874e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641880 | MtrunA17_Chr4g0026691 | 96.795 | 156 | 5 | 0 | 1 | 156 | 243 | 398 | 1.89e-108 | 317 |
| Msa0641880 | MtrunA17_Chr2g0321201 | 70.513 | 156 | 45 | 1 | 1 | 156 | 245 | 399 | 1.43e-77 | 238 |
| Msa0641880 | MtrunA17_Chr4g0026701 | 69.872 | 156 | 47 | 0 | 1 | 156 | 244 | 399 | 3.97e-77 | 237 |
| Msa0641880 | MtrunA17_Chr2g0321181 | 67.949 | 156 | 50 | 0 | 1 | 156 | 243 | 398 | 9.00e-75 | 231 |
| Msa0641880 | MtrunA17_Chr4g0026771 | 47.682 | 151 | 79 | 0 | 1 | 151 | 243 | 393 | 2.37e-45 | 154 |
| Msa0641880 | MtrunA17_Chr4g0026711 | 45.860 | 157 | 85 | 0 | 1 | 157 | 247 | 403 | 5.62e-45 | 154 |
| Msa0641880 | MtrunA17_Chr6g0465391 | 51.701 | 147 | 69 | 2 | 1 | 145 | 244 | 390 | 5.76e-43 | 147 |
| Msa0641880 | MtrunA17_Chr1g0176054 | 43.056 | 144 | 81 | 1 | 1 | 143 | 362 | 505 | 4.33e-40 | 142 |
| Msa0641880 | MtrunA17_Chr6g0465381 | 48.299 | 147 | 74 | 2 | 1 | 145 | 1 | 147 | 5.36e-34 | 117 |
| Msa0641880 | MtrunA17_Chr5g0419501 | 45.000 | 120 | 66 | 0 | 39 | 158 | 230 | 349 | 4.06e-31 | 114 |
| Msa0641880 | MtrunA17_Chr5g0431271 | 55.224 | 67 | 30 | 0 | 1 | 67 | 1 | 67 | 4.54e-23 | 88.2 |
| Msa0641880 | MtrunA17_Chr5g0431251 | 55.224 | 67 | 30 | 0 | 1 | 67 | 64 | 130 | 7.15e-22 | 85.9 |
| Msa0641880 | MtrunA17_Chr5g0431281 | 39.785 | 93 | 56 | 0 | 67 | 159 | 28 | 120 | 4.91e-20 | 82.4 |
| Msa0641880 | MtrunA17_Chr5g0431261 | 34.783 | 92 | 60 | 0 | 67 | 158 | 3 | 94 | 1.67e-16 | 70.5 |
| Msa0641880 | MtrunA17_Chr4g0026911 | 38.043 | 92 | 56 | 1 | 67 | 157 | 3 | 94 | 2.25e-16 | 72.4 |
| Msa0641880 | MtrunA17_Chr4g0026901 | 56.098 | 41 | 18 | 0 | 1 | 41 | 32 | 72 | 4.00e-11 | 56.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0641880 | AT4G33790.2 | 62.179 | 156 | 58 | 1 | 1 | 156 | 134 | 288 | 2.67e-67 | 209 |
| Msa0641880 | AT4G33790.1 | 62.179 | 156 | 58 | 1 | 1 | 156 | 247 | 401 | 2.56e-66 | 209 |
| Msa0641880 | AT5G22500.2 | 50.318 | 157 | 78 | 0 | 1 | 157 | 241 | 397 | 5.46e-54 | 175 |
| Msa0641880 | AT5G22500.1 | 49.682 | 157 | 79 | 0 | 1 | 157 | 241 | 397 | 9.46e-53 | 174 |
| Msa0641880 | AT3G44540.1 | 47.134 | 157 | 83 | 0 | 1 | 157 | 243 | 399 | 9.30e-51 | 169 |
| Msa0641880 | AT3G44550.2 | 45.860 | 157 | 85 | 0 | 1 | 157 | 135 | 291 | 4.90e-47 | 157 |
| Msa0641880 | AT3G44550.1 | 45.860 | 157 | 85 | 0 | 1 | 157 | 244 | 400 | 2.95e-46 | 157 |
| Msa0641880 | AT5G22420.2 | 42.038 | 157 | 90 | 1 | 1 | 157 | 64 | 219 | 5.32e-43 | 144 |
| Msa0641880 | AT5G22420.7 | 42.038 | 157 | 90 | 1 | 1 | 157 | 64 | 219 | 5.32e-43 | 144 |
| Msa0641880 | AT5G22420.5 | 42.038 | 157 | 90 | 1 | 1 | 157 | 83 | 238 | 1.02e-42 | 144 |
| Msa0641880 | AT5G22420.3 | 42.038 | 157 | 90 | 1 | 1 | 157 | 118 | 273 | 1.58e-42 | 145 |
| Msa0641880 | AT5G22420.6 | 42.038 | 157 | 90 | 1 | 1 | 157 | 118 | 273 | 1.58e-42 | 145 |
| Msa0641880 | AT5G22420.4 | 42.038 | 157 | 90 | 1 | 1 | 157 | 134 | 289 | 2.50e-42 | 144 |
| Msa0641880 | AT5G22420.1 | 42.038 | 157 | 90 | 1 | 1 | 157 | 170 | 325 | 4.64e-42 | 144 |
| Msa0641880 | AT3G44560.2 | 45.223 | 157 | 86 | 0 | 1 | 157 | 244 | 400 | 8.94e-40 | 139 |
| Msa0641880 | AT3G44560.3 | 45.752 | 153 | 83 | 0 | 1 | 153 | 244 | 396 | 4.36e-39 | 137 |
| Msa0641880 | AT3G44560.1 | 45.752 | 153 | 83 | 0 | 1 | 153 | 244 | 396 | 1.41e-38 | 137 |
| Msa0641880 | AT3G11980.1 | 40.789 | 152 | 86 | 2 | 1 | 148 | 363 | 514 | 2.71e-38 | 137 |
| Msa0641880 | AT3G44540.2 | 60.870 | 69 | 27 | 0 | 1 | 69 | 243 | 311 | 1.23e-26 | 102 |
| Msa0641880 | AT3G44540.3 | 60.870 | 69 | 27 | 0 | 1 | 69 | 243 | 311 | 1.23e-26 | 102 |
| Msa0641880 | AT3G56700.1 | 35.537 | 121 | 77 | 1 | 1 | 120 | 285 | 405 | 4.62e-20 | 86.3 |
| Msa0641880 | AT3G56700.2 | 35.537 | 121 | 77 | 1 | 1 | 120 | 306 | 426 | 4.76e-20 | 86.3 |
Find 36 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGCTACCTTCTTATGTTAA+AGG | 0.128083 | 4_3:+42677991 | Msa0641880:CDS |
| TATAGTGATCTTCAAGAATT+TGG | 0.161600 | 4_3:+42677857 | Msa0641880:CDS |
| TTTCCATCTTTGTTTATATA+TGG | 0.226047 | 4_3:-42677902 | None:intergenic |
| TGATATATAGCATCGTTATT+AGG | 0.349661 | 4_3:-42677803 | None:intergenic |
| TGTAACTTTACCAACTTTAA+CGG | 0.393745 | 4_3:-42677927 | None:intergenic |
| GTAACTTTACCAACTTTAAC+GGG | 0.397343 | 4_3:-42677926 | None:intergenic |
| CCTTTCCCTGGTTGGTCTGA+AGG | 0.399036 | 4_3:+42677103 | Msa0641880:CDS |
| GGAAAATTAACATGCTTCCT+TGG | 0.425648 | 4_3:+42677597 | Msa0641880:CDS |
| CTGGTTGGTCTGAAGGTGTA+AGG | 0.475279 | 4_3:+42677110 | Msa0641880:CDS |
| TAGAAACCTTTAACATAAGA+AGG | 0.482503 | 4_3:-42677997 | None:intergenic |
| AATGCTTGTGGGACAATTGA+AGG | 0.483673 | 4_3:+42677024 | Msa0641880:CDS |
| GACAGTTTAGCCGTAGCCTA+TGG | 0.486521 | 4_3:+42677570 | Msa0641880:CDS |
| TCAAAGAACCTTTCCCTGGT+TGG | 0.502477 | 4_3:+42677095 | Msa0641880:CDS |
| TGAAGATCACTATACATAAG+AGG | 0.507496 | 4_3:-42677848 | None:intergenic |
| AAACCATATATAAACAAAGA+TGG | 0.508654 | 4_3:+42677899 | Msa0641880:CDS |
| GAATTCACCACCATGTCAGC+TGG | 0.534357 | 4_3:-42677746 | None:intergenic |
| GATGGAAAGCCCGTTAAAGT+TGG | 0.542370 | 4_3:+42677917 | Msa0641880:CDS |
| ACATTCAAAGAACCTTTCCC+TGG | 0.552357 | 4_3:+42677091 | Msa0641880:CDS |
| TTAGCCGTAGCCTATGGAAA+AGG | 0.556371 | 4_3:+42677576 | Msa0641880:CDS |
| AACGATGCTATATATCATGT+TGG | 0.565095 | 4_3:+42677809 | Msa0641880:CDS |
| TAATCAGATACCAGCTGACA+TGG | 0.568856 | 4_3:+42677736 | Msa0641880:intron |
| AATGTACTAGTGACAATGGC+TGG | 0.569176 | 4_3:-42677073 | None:intergenic |
| ATGATTTGCATGAGCTACAA+TGG | 0.570741 | 4_3:-42677780 | None:intergenic |
| GCAATGGGAGAAATGCTTGT+GGG | 0.580683 | 4_3:+42677013 | None:intergenic |
| ATGCTTGTGGGACAATTGAA+GGG | 0.600919 | 4_3:+42677025 | Msa0641880:CDS |
| TCTTAATGCAATTGTTGATG+TGG | 0.603354 | 4_3:+42677623 | Msa0641880:CDS |
| CTTACACCTTCAGACCAACC+AGG | 0.605765 | 4_3:-42677109 | None:intergenic |
| CCTTCAGACCAACCAGGGAA+AGG | 0.608114 | 4_3:-42677103 | None:intergenic |
| AGTTACAGTGTTTAGCAACA+TGG | 0.614148 | 4_3:+42677943 | Msa0641880:CDS |
| TTACACCTTCAGACCAACCA+GGG | 0.619176 | 4_3:-42677108 | None:intergenic |
| GGTGGTGAATTCAATACTAG+TGG | 0.625469 | 4_3:+42677757 | Msa0641880:CDS |
| TTTGAATGTACTAGTGACAA+TGG | 0.628163 | 4_3:-42677077 | None:intergenic |
| GGCAATGGGAGAAATGCTTG+TGG | 0.643168 | 4_3:+42677012 | None:intergenic |
| CATAAGAGGTCTTCTAACAG+AGG | 0.676396 | 4_3:-42677834 | None:intergenic |
| TCAGATACCAGCTGACATGG+TGG | 0.699544 | 4_3:+42677739 | Msa0641880:intron |
| CAATTGCATTAAGATCTCCA+AGG | 0.727973 | 4_3:-42677614 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTATTTTTGTTTATATAATT+TGG | - | chr4_3:42677243-42677262 | None:intergenic | 10.0% |
| !! | CAAATTATATAAACAAAAAT+AGG | + | chr4_3:42677241-42677260 | Msa0641880:intron | 10.0% |
| !!! | TTATCAAATAAATTCATTTT+TGG | - | chr4_3:42677309-42677328 | None:intergenic | 10.0% |
| !!! | ATTGAAATAATTTTCAAATT+TGG | - | chr4_3:42677377-42677396 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAATATAGT+AGG | + | chr4_3:42677483-42677502 | Msa0641880:intron | 10.0% |
| !!! | CTATTTTTGTTTATATAATT+TGG | - | chr4_3:42677243-42677262 | None:intergenic | 10.0% |
| !! | CAAATTATATAAACAAAAAT+AGG | + | chr4_3:42677241-42677260 | Msa0641880:intron | 10.0% |
| !!! | TTATCAAATAAATTCATTTT+TGG | - | chr4_3:42677309-42677328 | None:intergenic | 10.0% |
| !!! | ATTGAAATAATTTTCAAATT+TGG | - | chr4_3:42677377-42677396 | None:intergenic | 10.0% |
| !! | TTCAAAAAAAAAAATATAGT+AGG | + | chr4_3:42677483-42677502 | Msa0641880:intron | 10.0% |
| !! | TGTAAATGAAAATTAATAGT+AGG | + | chr4_3:42677192-42677211 | Msa0641880:intron | 15.0% |
| !! | TATATAAACAAAAATAGGTT+TGG | + | chr4_3:42677246-42677265 | Msa0641880:intron | 15.0% |
| !! | AAAAATAAAGCGAAAAATAT+CGG | - | chr4_3:42677332-42677351 | None:intergenic | 15.0% |
| !! | AAATAGCACATATAAAAATT+TGG | - | chr4_3:42677465-42677484 | None:intergenic | 15.0% |
| !! | TAATTAGGAATAAATACTAT+TGG | - | chr4_3:42677666-42677685 | None:intergenic | 15.0% |
| !! | ATTAATGGAGAAATATAATT+AGG | - | chr4_3:42677681-42677700 | None:intergenic | 15.0% |
| !! | TGTAAATGAAAATTAATAGT+AGG | + | chr4_3:42677192-42677211 | Msa0641880:intron | 15.0% |
| !! | TATATAAACAAAAATAGGTT+TGG | + | chr4_3:42677246-42677265 | Msa0641880:intron | 15.0% |
| !! | AAAAATAAAGCGAAAAATAT+CGG | - | chr4_3:42677332-42677351 | None:intergenic | 15.0% |
| !! | AAATAGCACATATAAAAATT+TGG | - | chr4_3:42677465-42677484 | None:intergenic | 15.0% |
| !! | TAATTAGGAATAAATACTAT+TGG | - | chr4_3:42677666-42677685 | None:intergenic | 15.0% |
| !! | ATTAATGGAGAAATATAATT+AGG | - | chr4_3:42677681-42677700 | None:intergenic | 15.0% |
| !!! | TTTATATAATTTGGAACAGA+GGG | - | chr4_3:42677234-42677253 | None:intergenic | 20.0% |
| !!! | ATGTATTTTGTACAACTTTT+AGG | + | chr4_3:42677277-42677296 | Msa0641880:intron | 20.0% |
| !!! | TTTTTTTCTTTTCAATCAAG+AGG | + | chr4_3:42677350-42677369 | Msa0641880:intron | 20.0% |
| !! | TTCATATACCTAAAAATTTG+AGG | + | chr4_3:42677415-42677434 | Msa0641880:intron | 20.0% |
| !! | CTACTATTAATATTCAAAGT+TGG | - | chr4_3:42677442-42677461 | None:intergenic | 20.0% |
| !! | CACAAACATCAATAAAAATT+AGG | - | chr4_3:42677529-42677548 | None:intergenic | 20.0% |
| !!! | AATAAATACTATTGGTTTCA+TGG | - | chr4_3:42677658-42677677 | None:intergenic | 20.0% |
| !! | AAACCATATATAAACAAAGA+TGG | + | chr4_3:42677899-42677918 | Msa0641880:CDS | 20.0% |
| !!! | TTTCCATCTTTGTTTATATA+TGG | - | chr4_3:42677905-42677924 | None:intergenic | 20.0% |
| !!! | TTTATATAATTTGGAACAGA+GGG | - | chr4_3:42677234-42677253 | None:intergenic | 20.0% |
| !!! | ATGTATTTTGTACAACTTTT+AGG | + | chr4_3:42677277-42677296 | Msa0641880:intron | 20.0% |
| !!! | TTTTTTTCTTTTCAATCAAG+AGG | + | chr4_3:42677350-42677369 | Msa0641880:intron | 20.0% |
| !! | TTCATATACCTAAAAATTTG+AGG | + | chr4_3:42677415-42677434 | Msa0641880:intron | 20.0% |
| !! | CTACTATTAATATTCAAAGT+TGG | - | chr4_3:42677442-42677461 | None:intergenic | 20.0% |
| !! | CACAAACATCAATAAAAATT+AGG | - | chr4_3:42677529-42677548 | None:intergenic | 20.0% |
| !!! | AATAAATACTATTGGTTTCA+TGG | - | chr4_3:42677658-42677677 | None:intergenic | 20.0% |
| !! | AAACCATATATAAACAAAGA+TGG | + | chr4_3:42677899-42677918 | Msa0641880:CDS | 20.0% |
| !!! | TTTCCATCTTTGTTTATATA+TGG | - | chr4_3:42677905-42677924 | None:intergenic | 20.0% |
| !! | TTATATAATTTGGAACAGAG+GGG | - | chr4_3:42677233-42677252 | None:intergenic | 25.0% |
| !! | GTTTATATAATTTGGAACAG+AGG | - | chr4_3:42677235-42677254 | None:intergenic | 25.0% |
| !! | TGTTAATTTTCCTTTTCCAT+AGG | - | chr4_3:42677589-42677608 | None:intergenic | 25.0% |
| ! | AGATGAGACTAGAAAATTAA+TGG | - | chr4_3:42677696-42677715 | None:intergenic | 25.0% |
| ! | GTATCTGATTATTGAATAAG+TGG | - | chr4_3:42677727-42677746 | None:intergenic | 25.0% |
| ! | TGATATATAGCATCGTTATT+AGG | - | chr4_3:42677806-42677825 | None:intergenic | 25.0% |
| ! | TATAGTGATCTTCAAGAATT+TGG | + | chr4_3:42677857-42677876 | Msa0641880:CDS | 25.0% |
| ! | TGTAACTTTACCAACTTTAA+CGG | - | chr4_3:42677930-42677949 | None:intergenic | 25.0% |
| ! | TAGAAACCTTTAACATAAGA+AGG | - | chr4_3:42678000-42678019 | None:intergenic | 25.0% |
| !! | TTATATAATTTGGAACAGAG+GGG | - | chr4_3:42677233-42677252 | None:intergenic | 25.0% |
| !! | GTTTATATAATTTGGAACAG+AGG | - | chr4_3:42677235-42677254 | None:intergenic | 25.0% |
| !! | TGTTAATTTTCCTTTTCCAT+AGG | - | chr4_3:42677589-42677608 | None:intergenic | 25.0% |
| ! | AGATGAGACTAGAAAATTAA+TGG | - | chr4_3:42677696-42677715 | None:intergenic | 25.0% |
| ! | GTATCTGATTATTGAATAAG+TGG | - | chr4_3:42677727-42677746 | None:intergenic | 25.0% |
| ! | TGATATATAGCATCGTTATT+AGG | - | chr4_3:42677806-42677825 | None:intergenic | 25.0% |
| ! | TATAGTGATCTTCAAGAATT+TGG | + | chr4_3:42677857-42677876 | Msa0641880:CDS | 25.0% |
| ! | TGTAACTTTACCAACTTTAA+CGG | - | chr4_3:42677930-42677949 | None:intergenic | 25.0% |
| ! | TAGAAACCTTTAACATAAGA+AGG | - | chr4_3:42678000-42678019 | None:intergenic | 25.0% |
| TTTGAATGTACTAGTGACAA+TGG | - | chr4_3:42677080-42677099 | None:intergenic | 30.0% | |
| !! | AAGTTGGTCCTCAAATTTTT+AGG | - | chr4_3:42677426-42677445 | None:intergenic | 30.0% |
| ! | TGTTTGTGCTTGTTAATTAC+AGG | + | chr4_3:42677541-42677560 | Msa0641880:intron | 30.0% |
| TCTTAATGCAATTGTTGATG+TGG | + | chr4_3:42677623-42677642 | Msa0641880:CDS | 30.0% | |
| AACGATGCTATATATCATGT+TGG | + | chr4_3:42677809-42677828 | Msa0641880:CDS | 30.0% | |
| TGAAGATCACTATACATAAG+AGG | - | chr4_3:42677851-42677870 | None:intergenic | 30.0% | |
| GTAACTTTACCAACTTTAAC+GGG | - | chr4_3:42677929-42677948 | None:intergenic | 30.0% | |
| TTTGAATGTACTAGTGACAA+TGG | - | chr4_3:42677080-42677099 | None:intergenic | 30.0% | |
| !! | AAGTTGGTCCTCAAATTTTT+AGG | - | chr4_3:42677426-42677445 | None:intergenic | 30.0% |
| ! | TGTTTGTGCTTGTTAATTAC+AGG | + | chr4_3:42677541-42677560 | Msa0641880:intron | 30.0% |
| TCTTAATGCAATTGTTGATG+TGG | + | chr4_3:42677623-42677642 | Msa0641880:CDS | 30.0% | |
| AACGATGCTATATATCATGT+TGG | + | chr4_3:42677809-42677828 | Msa0641880:CDS | 30.0% | |
| TGAAGATCACTATACATAAG+AGG | - | chr4_3:42677851-42677870 | None:intergenic | 30.0% | |
| GTAACTTTACCAACTTTAAC+GGG | - | chr4_3:42677929-42677948 | None:intergenic | 30.0% | |
| ! | TTTTCCTTTTCCATAGGCTA+CGG | - | chr4_3:42677583-42677602 | None:intergenic | 35.0% |
| GGAAAATTAACATGCTTCCT+TGG | + | chr4_3:42677597-42677616 | Msa0641880:CDS | 35.0% | |
| CAATTGCATTAAGATCTCCA+AGG | - | chr4_3:42677617-42677636 | None:intergenic | 35.0% | |
| ! | ATGATTTGCATGAGCTACAA+TGG | - | chr4_3:42677783-42677802 | None:intergenic | 35.0% |
| AGTTACAGTGTTTAGCAACA+TGG | + | chr4_3:42677943-42677962 | Msa0641880:CDS | 35.0% | |
| TCGCTACCTTCTTATGTTAA+AGG | + | chr4_3:42677991-42678010 | Msa0641880:CDS | 35.0% | |
| ! | TTTTCCTTTTCCATAGGCTA+CGG | - | chr4_3:42677583-42677602 | None:intergenic | 35.0% |
| GGAAAATTAACATGCTTCCT+TGG | + | chr4_3:42677597-42677616 | Msa0641880:CDS | 35.0% | |
| CAATTGCATTAAGATCTCCA+AGG | - | chr4_3:42677617-42677636 | None:intergenic | 35.0% | |
| ! | ATGATTTGCATGAGCTACAA+TGG | - | chr4_3:42677783-42677802 | None:intergenic | 35.0% |
| AGTTACAGTGTTTAGCAACA+TGG | + | chr4_3:42677943-42677962 | Msa0641880:CDS | 35.0% | |
| TCGCTACCTTCTTATGTTAA+AGG | + | chr4_3:42677991-42678010 | Msa0641880:CDS | 35.0% | |
| AATGCTTGTGGGACAATTGA+AGG | + | chr4_3:42677024-42677043 | Msa0641880:CDS | 40.0% | |
| ATGCTTGTGGGACAATTGAA+GGG | + | chr4_3:42677025-42677044 | Msa0641880:CDS | 40.0% | |
| AATGTACTAGTGACAATGGC+TGG | - | chr4_3:42677076-42677095 | None:intergenic | 40.0% | |
| ACATTCAAAGAACCTTTCCC+TGG | + | chr4_3:42677091-42677110 | Msa0641880:CDS | 40.0% | |
| ATGCAATTGTTGATGTGGTG+AGG | + | chr4_3:42677628-42677647 | Msa0641880:intron | 40.0% | |
| TAATCAGATACCAGCTGACA+TGG | + | chr4_3:42677736-42677755 | Msa0641880:intron | 40.0% | |
| GGTGGTGAATTCAATACTAG+TGG | + | chr4_3:42677757-42677776 | Msa0641880:CDS | 40.0% | |
| CATAAGAGGTCTTCTAACAG+AGG | - | chr4_3:42677837-42677856 | None:intergenic | 40.0% | |
| AATGCTTGTGGGACAATTGA+AGG | + | chr4_3:42677024-42677043 | Msa0641880:CDS | 40.0% | |
| ATGCTTGTGGGACAATTGAA+GGG | + | chr4_3:42677025-42677044 | Msa0641880:CDS | 40.0% | |
| AATGTACTAGTGACAATGGC+TGG | - | chr4_3:42677076-42677095 | None:intergenic | 40.0% | |
| ACATTCAAAGAACCTTTCCC+TGG | + | chr4_3:42677091-42677110 | Msa0641880:CDS | 40.0% | |
| ATGCAATTGTTGATGTGGTG+AGG | + | chr4_3:42677628-42677647 | Msa0641880:intron | 40.0% | |
| TAATCAGATACCAGCTGACA+TGG | + | chr4_3:42677736-42677755 | Msa0641880:intron | 40.0% | |
| GGTGGTGAATTCAATACTAG+TGG | + | chr4_3:42677757-42677776 | Msa0641880:CDS | 40.0% | |
| CATAAGAGGTCTTCTAACAG+AGG | - | chr4_3:42677837-42677856 | None:intergenic | 40.0% | |
| TCAAAGAACCTTTCCCTGGT+TGG | + | chr4_3:42677095-42677114 | Msa0641880:CDS | 45.0% | |
| TTACACCTTCAGACCAACCA+GGG | - | chr4_3:42677111-42677130 | None:intergenic | 45.0% | |
| TTAGCCGTAGCCTATGGAAA+AGG | + | chr4_3:42677576-42677595 | Msa0641880:CDS | 45.0% | |
| GATGGAAAGCCCGTTAAAGT+TGG | + | chr4_3:42677917-42677936 | Msa0641880:CDS | 45.0% | |
| TCAAAGAACCTTTCCCTGGT+TGG | + | chr4_3:42677095-42677114 | Msa0641880:CDS | 45.0% | |
| TTACACCTTCAGACCAACCA+GGG | - | chr4_3:42677111-42677130 | None:intergenic | 45.0% | |
| TTAGCCGTAGCCTATGGAAA+AGG | + | chr4_3:42677576-42677595 | Msa0641880:CDS | 45.0% | |
| GATGGAAAGCCCGTTAAAGT+TGG | + | chr4_3:42677917-42677936 | Msa0641880:CDS | 45.0% | |
| CTTACACCTTCAGACCAACC+AGG | - | chr4_3:42677112-42677131 | None:intergenic | 50.0% | |
| !! | CTGGTTGGTCTGAAGGTGTA+AGG | + | chr4_3:42677110-42677129 | Msa0641880:CDS | 50.0% |
| GACAGTTTAGCCGTAGCCTA+TGG | + | chr4_3:42677570-42677589 | Msa0641880:CDS | 50.0% | |
| TCAGATACCAGCTGACATGG+TGG | + | chr4_3:42677739-42677758 | Msa0641880:intron | 50.0% | |
| GAATTCACCACCATGTCAGC+TGG | - | chr4_3:42677749-42677768 | None:intergenic | 50.0% | |
| CTTACACCTTCAGACCAACC+AGG | - | chr4_3:42677112-42677131 | None:intergenic | 50.0% | |
| !! | CTGGTTGGTCTGAAGGTGTA+AGG | + | chr4_3:42677110-42677129 | Msa0641880:CDS | 50.0% |
| GACAGTTTAGCCGTAGCCTA+TGG | + | chr4_3:42677570-42677589 | Msa0641880:CDS | 50.0% | |
| TCAGATACCAGCTGACATGG+TGG | + | chr4_3:42677739-42677758 | Msa0641880:intron | 50.0% | |
| GAATTCACCACCATGTCAGC+TGG | - | chr4_3:42677749-42677768 | None:intergenic | 50.0% | |
| CCTTCAGACCAACCAGGGAA+AGG | - | chr4_3:42677106-42677125 | None:intergenic | 55.0% | |
| !! | CCTTTCCCTGGTTGGTCTGA+AGG | + | chr4_3:42677103-42677122 | Msa0641880:CDS | 55.0% |
| CCTTCAGACCAACCAGGGAA+AGG | - | chr4_3:42677106-42677125 | None:intergenic | 55.0% | |
| !! | CCTTTCCCTGGTTGGTCTGA+AGG | + | chr4_3:42677103-42677122 | Msa0641880:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 42677016 | 42678024 | 42677016 | ID=Msa0641880;Name=Msa0641880 |
| chr4_3 | mRNA | 42677016 | 42678024 | 42677016 | ID=Msa0641880-mRNA-1;Parent=Msa0641880;Name=Msa0641880-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|3|0|159 |
| chr4_3 | exon | 42677016 | 42677131 | 42677016 | ID=Msa0641880-mRNA-1:exon:9635;Parent=Msa0641880-mRNA-1 |
| chr4_3 | exon | 42677563 | 42677644 | 42677563 | ID=Msa0641880-mRNA-1:exon:9636;Parent=Msa0641880-mRNA-1 |
| chr4_3 | exon | 42677743 | 42678024 | 42677743 | ID=Msa0641880-mRNA-1:exon:9637;Parent=Msa0641880-mRNA-1 |
| chr4_3 | CDS | 42677016 | 42677131 | 42677016 | ID=Msa0641880-mRNA-1:cds;Parent=Msa0641880-mRNA-1 |
| chr4_3 | CDS | 42677563 | 42677644 | 42677563 | ID=Msa0641880-mRNA-1:cds;Parent=Msa0641880-mRNA-1 |
| chr4_3 | CDS | 42677743 | 42678024 | 42677743 | ID=Msa0641880-mRNA-1:cds;Parent=Msa0641880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
