Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643140 | KEH30052.1 | 86.933 | 375 | 28 | 3 | 1 | 357 | 1 | 372 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643120 | Msa0643140 | 0.801459 | 8.914316e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643140 | MtrunA17_Chr4g0029221 | 86.427 | 361 | 28 | 3 | 1 | 343 | 1 | 358 | 0.0 | 585 |
| Msa0643140 | MtrunA17_Chr2g0326551 | 48.800 | 375 | 122 | 13 | 14 | 349 | 7 | 350 | 5.38e-93 | 286 |
| Msa0643140 | MtrunA17_Chr1g0181371 | 43.034 | 323 | 147 | 10 | 42 | 343 | 34 | 340 | 8.38e-65 | 213 |
| Msa0643140 | MtrunA17_Chr3g0120281 | 45.327 | 214 | 103 | 6 | 138 | 343 | 117 | 324 | 1.06e-45 | 162 |
| Msa0643140 | MtrunA17_Chr2g0286611 | 42.384 | 151 | 56 | 5 | 188 | 328 | 146 | 275 | 8.66e-25 | 104 |
| Msa0643140 | MtrunA17_Chr7g0246271 | 54.430 | 79 | 34 | 2 | 258 | 335 | 45 | 122 | 5.67e-17 | 78.6 |
| Msa0643140 | MtrunA17_Chr7g0246251 | 59.016 | 61 | 24 | 1 | 276 | 335 | 1 | 61 | 1.43e-15 | 74.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643140 | AT5G60580.1 | 49.300 | 357 | 145 | 9 | 1 | 343 | 1 | 335 | 1.18e-88 | 275 |
| Msa0643140 | AT5G60580.3 | 49.300 | 357 | 145 | 9 | 1 | 343 | 1 | 335 | 1.18e-88 | 275 |
| Msa0643140 | AT5G60580.4 | 49.300 | 357 | 145 | 9 | 1 | 343 | 1 | 335 | 1.31e-88 | 275 |
| Msa0643140 | AT5G60580.2 | 49.300 | 357 | 145 | 9 | 1 | 343 | 1 | 335 | 1.31e-88 | 275 |
| Msa0643140 | AT3G09760.1 | 39.554 | 359 | 154 | 13 | 4 | 330 | 9 | 336 | 1.99e-55 | 189 |
| Msa0643140 | AT5G03180.3 | 42.020 | 307 | 146 | 14 | 38 | 328 | 29 | 319 | 8.00e-49 | 169 |
| Msa0643140 | AT5G03180.2 | 42.020 | 307 | 146 | 14 | 38 | 328 | 29 | 319 | 2.66e-48 | 169 |
| Msa0643140 | AT5G03180.5 | 40.850 | 306 | 147 | 13 | 38 | 328 | 29 | 315 | 9.50e-48 | 167 |
| Msa0643140 | AT5G03180.1 | 40.850 | 306 | 147 | 13 | 38 | 328 | 29 | 315 | 3.40e-47 | 166 |
| Msa0643140 | AT5G03180.4 | 51.020 | 196 | 86 | 7 | 137 | 328 | 95 | 284 | 1.06e-46 | 164 |
| Msa0643140 | AT3G06330.4 | 41.860 | 172 | 83 | 6 | 148 | 319 | 11 | 165 | 6.50e-23 | 97.8 |
| Msa0643140 | AT3G06330.3 | 31.068 | 309 | 171 | 11 | 42 | 343 | 31 | 304 | 6.56e-23 | 98.6 |
| Msa0643140 | AT5G18760.2 | 62.687 | 67 | 24 | 1 | 258 | 324 | 201 | 266 | 9.08e-23 | 98.2 |
| Msa0643140 | AT3G06330.1 | 41.279 | 172 | 84 | 6 | 148 | 319 | 122 | 276 | 2.33e-22 | 97.8 |
| Msa0643140 | AT5G18760.1 | 62.687 | 67 | 24 | 1 | 258 | 324 | 201 | 266 | 4.34e-22 | 97.1 |
| Msa0643140 | AT3G06330.2 | 66.129 | 62 | 20 | 1 | 258 | 319 | 47 | 107 | 4.58e-22 | 94.4 |
| Msa0643140 | AT2G37950.1 | 39.216 | 102 | 58 | 3 | 215 | 314 | 40 | 139 | 9.87e-14 | 69.7 |
| Msa0643140 | AT5G05830.1 | 43.750 | 80 | 40 | 2 | 253 | 328 | 72 | 150 | 7.50e-11 | 61.6 |
Find 169 sgRNAs with CRISPR-Local
Find 278 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACTTAGTTAATAGTTAT+TGG | 0.150386 | 4_3:+45643553 | None:intergenic |
| CACGTTACAATTTAATTATT+TGG | 0.152339 | 4_3:-45638993 | Msa0643140:three_prime_UTR |
| GAAAAGATCTTTATTGGATT+TGG | 0.153213 | 4_3:+45640935 | None:intergenic |
| ACAAAGAATGTGCTATTAAA+TGG | 0.203935 | 4_3:-45641302 | Msa0643140:CDS |
| AAATCAGAAAAGATCTTTAT+TGG | 0.208147 | 4_3:+45640929 | None:intergenic |
| GACAATGATCTTGATATTAA+AGG | 0.210057 | 4_3:+45641911 | None:intergenic |
| CTATACCTGAAACTCAATTT+TGG | 0.221918 | 4_3:+45642004 | None:intergenic |
| ACTTTAATCACACATCTATA+TGG | 0.227461 | 4_3:-45639550 | Msa0643140:three_prime_UTR |
| TTAAACTTTCCAAGTTATTC+TGG | 0.238004 | 4_3:-45643460 | Msa0643140:five_prime_UTR |
| TCATTGCCATTAGGAGAAAT+TGG | 0.239649 | 4_3:-45641848 | Msa0643140:CDS |
| GTTGAGGAAATGTGTTTATT+AGG | 0.241327 | 4_3:-45639174 | Msa0643140:three_prime_UTR |
| ATCCTTCTTGCAACATTTGC+TGG | 0.241759 | 4_3:-45639852 | Msa0643140:three_prime_UTR |
| CTTGCAACATTTGCTGGTTT+CGG | 0.266668 | 4_3:-45639846 | Msa0643140:three_prime_UTR |
| ACCTTCCTGTCACTCTATTA+TGG | 0.284499 | 4_3:-45641227 | Msa0643140:CDS |
| TCAATTTGGAGTGCTGCTTA+TGG | 0.286900 | 4_3:-45639037 | Msa0643140:three_prime_UTR |
| GTGTTCTTGATGGTATTTCT+AGG | 0.297442 | 4_3:+45642206 | None:intergenic |
| CTGTACCCGTTTACATCTTC+AGG | 0.318987 | 4_3:+45641159 | None:intergenic |
| AAAAGATCTTTATTGGATTT+GGG | 0.320988 | 4_3:+45640936 | None:intergenic |
| TTTCCACCATGAGTAGATTC+AGG | 0.327029 | 4_3:+45641815 | None:intergenic |
| TATTAAATGGTTTAGTATAA+AGG | 0.329125 | 4_3:-45641289 | Msa0643140:CDS |
| CTACACACCGCCTCTTCTTC+AGG | 0.329720 | 4_3:+45641405 | None:intergenic |
| TCCTTTACTCGAGGAGTAGA+AGG | 0.334132 | 4_3:+45641590 | None:intergenic |
| TTGTATGATAAACATGGATT+TGG | 0.335234 | 4_3:-45641098 | Msa0643140:exon |
| ATTAAATGGTTTAGTATAAA+GGG | 0.335378 | 4_3:-45641288 | Msa0643140:CDS |
| TGCACACAGTCAGCCATATC+TGG | 0.346455 | 4_3:+45640984 | None:intergenic |
| AAATCTTCTGAACACTCTTC+TGG | 0.352802 | 4_3:+45642184 | None:intergenic |
| CACTCTTCTGGTGTTCTTGA+TGG | 0.353004 | 4_3:+45642196 | None:intergenic |
| GATGAGTGTTTGTGCTTCAT+AGG | 0.354002 | 4_3:-45639306 | Msa0643140:three_prime_UTR |
| TGCATAACTTATTGTGTATA+GGG | 0.367788 | 4_3:-45639584 | Msa0643140:three_prime_UTR |
| TAGGGTTTGGCAAGAAGTTC+CGG | 0.368420 | 4_3:-45640802 | Msa0643140:three_prime_UTR |
| AATTGAGCAGACAAATAAAA+TGG | 0.369527 | 4_3:+45640828 | None:intergenic |
| CATAAGAAAATTCACTCTCT+TGG | 0.376527 | 4_3:+45642111 | None:intergenic |
| CTAAGTGGTATGGCTATCAT+TGG | 0.377267 | 4_3:-45643539 | Msa0643140:five_prime_UTR |
| GAATCTACTCATGGTGGAAA+TGG | 0.382585 | 4_3:-45641812 | Msa0643140:CDS |
| AGTAGTACCTTGTGAATAAC+AGG | 0.382845 | 4_3:+45643307 | None:intergenic |
| GAATGTCCAATTTCTCCTAA+TGG | 0.383436 | 4_3:+45641842 | None:intergenic |
| TGCATCCTTCCAGTTTGCTC+TGG | 0.394539 | 4_3:-45640154 | Msa0643140:three_prime_UTR |
| CTCTAGTCCTAGAAAATAGA+AGG | 0.396581 | 4_3:+45639076 | None:intergenic |
| AGAACTTCATCATTGCCATT+AGG | 0.398079 | 4_3:-45641857 | Msa0643140:CDS |
| AGGCCTAATACACAGGAAAA+TGG | 0.398830 | 4_3:+45640547 | None:intergenic |
| ACAGCTACATTCCAACTTGA+AGG | 0.402108 | 4_3:+45641347 | None:intergenic |
| CTGCATAACTTATTGTGTAT+AGG | 0.405691 | 4_3:-45639585 | Msa0643140:three_prime_UTR |
| ATCCTTCCAGTTTGCTCTGG+TGG | 0.406030 | 4_3:-45640151 | Msa0643140:three_prime_UTR |
| CAGTGAGGAGCAGGTTCATA+TGG | 0.415692 | 4_3:-45640182 | Msa0643140:three_prime_UTR |
| TGCTTCGATTAGGAGCTTCA+TGG | 0.417884 | 4_3:-45640879 | Msa0643140:three_prime_UTR |
| ATAAGAAAATTCACTCTCTT+GGG | 0.420956 | 4_3:+45642112 | None:intergenic |
| TATGGCTATATGCTTCGATT+AGG | 0.421143 | 4_3:-45640889 | Msa0643140:three_prime_UTR |
| GCCATAACTCACTCATTCAT+TGG | 0.421679 | 4_3:+45640906 | None:intergenic |
| ACAGCAAGGACAAAAGTATA+AGG | 0.424026 | 4_3:-45641640 | Msa0643140:CDS |
| CTTTAATCACACATCTATAT+GGG | 0.424176 | 4_3:-45639549 | Msa0643140:three_prime_UTR |
| TTGGTAAAATATTTACTCCT+AGG | 0.424681 | 4_3:-45641886 | Msa0643140:CDS |
| TTGTCCTTGCTGTTATTGGC+AGG | 0.426861 | 4_3:+45641650 | None:intergenic |
| CTGTAAAGGTGAACTTGCTT+TGG | 0.432752 | 4_3:-45641328 | Msa0643140:CDS |
| TGCACGCAGTCAGCCACATC+TGG | 0.432809 | 4_3:-45641058 | Msa0643140:three_prime_UTR |
| CACTATAGATTGATTGTGGT+TGG | 0.433741 | 4_3:+45639674 | None:intergenic |
| TAGACCGTCTAATCCAGATA+TGG | 0.436508 | 4_3:-45640997 | Msa0643140:three_prime_UTR |
| GGATCCAAAGTGTTCGAAAT+CGG | 0.437152 | 4_3:-45641206 | Msa0643140:CDS |
| ACGTCCCCGCCAAAGGATAC+TGG | 0.439438 | 4_3:-45641548 | Msa0643140:intron |
| TCCAATGAATGAGTGAGTTA+TGG | 0.439614 | 4_3:-45640907 | Msa0643140:three_prime_UTR |
| GGAGTAGGACTTGGTGTCAT+TGG | 0.440049 | 4_3:+45642145 | None:intergenic |
| CCTGCTTGTGTCATCGGTAG+AGG | 0.442836 | 4_3:+45639738 | None:intergenic |
| ATGTAGTTACTTTACTTACA+TGG | 0.443306 | 4_3:-45639109 | Msa0643140:three_prime_UTR |
| AGAGAACCACCAGAGCAAAC+TGG | 0.443716 | 4_3:+45640145 | None:intergenic |
| ATAGGATGATGATGATTCAA+TGG | 0.445528 | 4_3:-45642281 | Msa0643140:intron |
| GAATATAGCTTCTCTTGCTA+TGG | 0.449520 | 4_3:-45639507 | Msa0643140:three_prime_UTR |
| ATTTGTGTCCAGTGAGGAGC+AGG | 0.456360 | 4_3:-45640191 | Msa0643140:intron |
| CATTCCGATTTCGAACACTT+TGG | 0.460321 | 4_3:+45641202 | None:intergenic |
| ACAGGAAAATGGAAGAGATA+TGG | 0.465594 | 4_3:+45640558 | None:intergenic |
| AAGTAACTACATATTGCATT+TGG | 0.468204 | 4_3:+45639120 | None:intergenic |
| CTGAAGATGTAAACGGGTAC+AGG | 0.469592 | 4_3:-45641158 | Msa0643140:CDS |
| ACAGTAACAACGCCACGTTC+AGG | 0.470448 | 4_3:-45639702 | Msa0643140:three_prime_UTR |
| TGTTGTCCTGCTTGTGTCAT+CGG | 0.477400 | 4_3:+45639732 | None:intergenic |
| GCTCAGCCTGAAGATGTAAA+CGG | 0.480622 | 4_3:-45641165 | Msa0643140:CDS |
| TATACTATACCAGTATCCTT+TGG | 0.481115 | 4_3:+45641539 | None:intergenic |
| TTCCACCATGAGTAGATTCA+GGG | 0.484995 | 4_3:+45641816 | None:intergenic |
| TCCTTCTACTCCTCGAGTAA+AGG | 0.487258 | 4_3:-45641591 | Msa0643140:CDS |
| TAACTTATTGTGTATAGGGT+AGG | 0.492605 | 4_3:-45639580 | Msa0643140:three_prime_UTR |
| TAGATTGATTGTGGTTGGAT+TGG | 0.494569 | 4_3:+45639679 | None:intergenic |
| TAGGATGATGATGATTCAAT+GGG | 0.495968 | 4_3:-45642280 | Msa0643140:CDS |
| CTATACCAGTATCCTTTGGC+GGG | 0.497498 | 4_3:+45641543 | None:intergenic |
| CTCAGCCTGAAGATGTAAAC+GGG | 0.499694 | 4_3:-45641164 | Msa0643140:CDS |
| GCCAATAACTATTAACTAAG+TGG | 0.499884 | 4_3:-45643554 | Msa0643140:five_prime_UTR |
| ACTCTCTTGGGAGTAGGAGC+TGG | 0.503276 | 4_3:+45642124 | None:intergenic |
| TGGATCCATAATAGAGTGAC+AGG | 0.503769 | 4_3:+45641222 | None:intergenic |
| GATTAGATGTGTCCCGGTGT+CGG | 0.518459 | 4_3:+45639330 | None:intergenic |
| ATGATGTCATGGAGGAGAGC+AGG | 0.524488 | 4_3:+45640527 | None:intergenic |
| CAGATGGAGAAGGAGATGGC+AGG | 0.526862 | 4_3:-45639784 | Msa0643140:three_prime_UTR |
| AAGTTGGAATGTAGCTGTAA+AGG | 0.531935 | 4_3:-45641342 | Msa0643140:CDS |
| GGCGGTGTGTAGAATCTGTC+TGG | 0.532774 | 4_3:-45641394 | Msa0643140:CDS |
| TTCGCCTTCTCAATATCTGC+CGG | 0.533203 | 4_3:+45641977 | None:intergenic |
| AACTTATTGTGTATAGGGTA+GGG | 0.536965 | 4_3:-45639579 | Msa0643140:three_prime_UTR |
| TTGTGCTTCATAGGTACTGA+TGG | 0.540626 | 4_3:-45639297 | Msa0643140:three_prime_UTR |
| CGTGGCGTTGTTACTGTTCG+AGG | 0.540842 | 4_3:+45639708 | None:intergenic |
| AAAGTGAGAGTGAAGGGTTG+AGG | 0.541365 | 4_3:-45639190 | Msa0643140:three_prime_UTR |
| TAGTTACTTTACTTACATGA+AGG | 0.541887 | 4_3:-45638960 | Msa0643140:three_prime_UTR |
| GAAGAGGAAACTTCCCGAGT+TGG | 0.542266 | 4_3:+45641950 | None:intergenic |
| TAACTATTAACTAAGTGGTA+TGG | 0.544420 | 4_3:-45643549 | Msa0643140:five_prime_UTR |
| ATATCAAGATCATTGTCGCT+TGG | 0.545947 | 4_3:-45641905 | Msa0643140:CDS |
| GACATGTGATGTCTGCAAAA+CGG | 0.547141 | 4_3:-45641259 | Msa0643140:CDS |
| GTAGGAGCTGGAGTAGGACT+TGG | 0.552384 | 4_3:+45642136 | None:intergenic |
| GGACAAAAGTATAAGGAGGA+TGG | 0.553352 | 4_3:-45641633 | Msa0643140:CDS |
| TCTTCCTCCTGTTATTCACA+AGG | 0.553528 | 4_3:-45643314 | Msa0643140:intron |
| AAAATGGTTCATGATTCTTG+AGG | 0.554278 | 4_3:+45640844 | None:intergenic |
| GTGTGATCAGACTTCAAGTT+CGG | 0.554364 | 4_3:-45641032 | Msa0643140:three_prime_UTR |
| AGAACAAAACCAGAATAACT+TGG | 0.555882 | 4_3:+45643451 | None:intergenic |
| CTATACACAATAAGTTATGC+AGG | 0.559973 | 4_3:+45639586 | None:intergenic |
| CTGCTTGTGTCATCGGTAGA+GGG | 0.562795 | 4_3:+45639739 | None:intergenic |
| GGTGGAAATGGAAGTGTTGG+TGG | 0.562904 | 4_3:-45641800 | Msa0643140:CDS |
| GCTTGTCATTGTTAGCATGT+TGG | 0.565634 | 4_3:-45640778 | Msa0643140:three_prime_UTR |
| CGTGACACGTGTCCGACACC+GGG | 0.565789 | 4_3:-45639342 | Msa0643140:three_prime_UTR |
| GGAGAGCAGGCCTAATACAC+AGG | 0.566553 | 4_3:+45640540 | None:intergenic |
| AAATTCACTCTCTTGGGAGT+AGG | 0.568812 | 4_3:+45642118 | None:intergenic |
| CTCCATGACATCATCAACCA+TGG | 0.572094 | 4_3:-45640518 | Msa0643140:three_prime_UTR |
| TAGGTCAAAGTGAGAGTGAA+GGG | 0.574000 | 4_3:-45639196 | Msa0643140:three_prime_UTR |
| ATGCTAACAATGACAAGCAC+CGG | 0.575004 | 4_3:+45640783 | None:intergenic |
| GAGTGGAAGTTCTATGCTTG+TGG | 0.576492 | 4_3:-45639814 | Msa0643140:three_prime_UTR |
| TTCAGCACATGAAAACCAGA+AGG | 0.578828 | 4_3:-45639270 | Msa0643140:three_prime_UTR |
| ATTTGGAGTGCTGCTTATGG+AGG | 0.579410 | 4_3:-45639034 | Msa0643140:three_prime_UTR |
| TCATTTCCTTCCTTTACTCG+AGG | 0.581239 | 4_3:+45641581 | None:intergenic |
| ACGTGACACGTGTCCGACAC+CGG | 0.581939 | 4_3:-45639343 | Msa0643140:three_prime_UTR |
| TAGGTGACGAAAATGGGAAC+TGG | 0.584263 | 4_3:-45640589 | Msa0643140:three_prime_UTR |
| TCATCGGATTAGATGTGTCC+CGG | 0.584620 | 4_3:+45639324 | None:intergenic |
| ACTATACCAGTATCCTTTGG+CGG | 0.587021 | 4_3:+45641542 | None:intergenic |
| GTTGAAGACGTCCCCGCCAA+AGG | 0.587869 | 4_3:-45641555 | Msa0643140:CDS |
| TTTGCACTATAGATTGATTG+TGG | 0.589452 | 4_3:+45639670 | None:intergenic |
| ACGGATACAGACACGGACAT+TGG | 0.590820 | 4_3:-45639448 | Msa0643140:three_prime_UTR |
| AAACATCACATGTTCCTCCC+AGG | 0.591425 | 4_3:-45642246 | Msa0643140:CDS |
| AACCAGCAAATGTTGCAAGA+AGG | 0.594657 | 4_3:+45639850 | None:intergenic |
| AGGAGGTGAGACCTTCAAGT+TGG | 0.596741 | 4_3:-45641358 | Msa0643140:CDS |
| TCTACTCCTCGAGTAAAGGA+AGG | 0.597280 | 4_3:-45641587 | Msa0643140:CDS |
| GAGTTTCAGGTATAGGACAC+CGG | 0.599623 | 4_3:-45641996 | Msa0643140:intron |
| TCAAACCCTGAATCTACTCA+TGG | 0.600239 | 4_3:-45641821 | Msa0643140:CDS |
| TATGAAGCACAAACACTCAT+CGG | 0.600873 | 4_3:+45639308 | None:intergenic |
| TTGTACTGATCTATGAAGCA+CGG | 0.601774 | 4_3:-45639467 | Msa0643140:three_prime_UTR |
| CATGGTGGAAATGGAAGTGT+TGG | 0.602731 | 4_3:-45641803 | Msa0643140:CDS |
| AGCACTCCAAATTGAAGATG+TGG | 0.603256 | 4_3:+45639045 | None:intergenic |
| ACCCATGGTTGATGATGTCA+TGG | 0.604370 | 4_3:+45640516 | None:intergenic |
| AGTGTTCGAAATCGGAATGG+TGG | 0.605413 | 4_3:-45641198 | Msa0643140:CDS |
| CAAAGTGTTCGAAATCGGAA+TGG | 0.607813 | 4_3:-45641201 | Msa0643140:CDS |
| TTGGGAGTAGGAGCTGGAGT+AGG | 0.608457 | 4_3:+45642130 | None:intergenic |
| TCAGCCATATCTGGATTAGA+CGG | 0.613755 | 4_3:+45640993 | None:intergenic |
| TCAGCACATGAAAACCAGAA+GGG | 0.614755 | 4_3:-45639269 | Msa0643140:three_prime_UTR |
| TTAGGTCAAAGTGAGAGTGA+AGG | 0.619789 | 4_3:-45639197 | Msa0643140:three_prime_UTR |
| CCTCTACCGATGACACAAGC+AGG | 0.621790 | 4_3:-45639738 | Msa0643140:three_prime_UTR |
| TGAAGATATACCTGAAGAAG+AGG | 0.622698 | 4_3:-45641415 | Msa0643140:CDS |
| GCTTCATTAGAGCAACAGCA+TGG | 0.624006 | 4_3:-45639762 | Msa0643140:three_prime_UTR |
| AACCCTGAATCTACTCATGG+TGG | 0.624757 | 4_3:-45641818 | Msa0643140:CDS |
| TCCATGACATCATCAACCAT+GGG | 0.625812 | 4_3:-45640517 | Msa0643140:intron |
| CTGATCACACGATCCAGATG+TGG | 0.627952 | 4_3:+45641045 | None:intergenic |
| TCCATAATAGAGTGACAGGA+AGG | 0.632817 | 4_3:+45641226 | None:intergenic |
| AGAAGGCGAATACACCAACT+CGG | 0.636520 | 4_3:-45641964 | Msa0643140:CDS |
| ATCGAAGATGATGATGATGA+TGG | 0.640558 | 4_3:-45641438 | Msa0643140:CDS |
| GAAGGCGAATACACCAACTC+GGG | 0.645325 | 4_3:-45641963 | Msa0643140:CDS |
| AATTCAGTGAAATTATGTGT+CGG | 0.647229 | 4_3:-45639383 | Msa0643140:three_prime_UTR |
| GCAAGGACAAAAGTATAAGG+AGG | 0.650576 | 4_3:-45641637 | Msa0643140:CDS |
| AACCACCAGAGCAAACTGGA+AGG | 0.657209 | 4_3:+45640149 | None:intergenic |
| ATGAAGCACGGATACAGACA+CGG | 0.660955 | 4_3:-45639455 | Msa0643140:three_prime_UTR |
| TATACCAGTATCCTTTGGCG+GGG | 0.661854 | 4_3:+45641544 | None:intergenic |
| CTGGTTGAATTATGTGAAGG+AGG | 0.667587 | 4_3:-45641375 | Msa0643140:CDS |
| GACACCGGCAGATATTGAGA+AGG | 0.671873 | 4_3:-45641981 | Msa0643140:CDS |
| TGGTTGGATTGGCCTGAACG+TGG | 0.672050 | 4_3:+45639690 | None:intergenic |
| AGATATACCTGAAGAAGAGG+CGG | 0.681280 | 4_3:-45641412 | Msa0643140:CDS |
| AGAAAATAAACATGTCACTG+AGG | 0.695376 | 4_3:-45643383 | Msa0643140:CDS |
| AATGCCTGCCAATAACAGCA+AGG | 0.696048 | 4_3:-45641654 | Msa0643140:CDS |
| AGTACCTTGTGAATAACAGG+AGG | 0.697026 | 4_3:+45643310 | None:intergenic |
| GGTTTCGGTGTAGTAATGAG+TGG | 0.710495 | 4_3:-45639831 | Msa0643140:three_prime_UTR |
| TGTCTGGTTGAATTATGTGA+AGG | 0.716899 | 4_3:-45641378 | Msa0643140:CDS |
| ATGTGATGTCTGCAAAACGG+AGG | 0.736521 | 4_3:-45641256 | Msa0643140:CDS |
| CATGGTTGATGATGTCATGG+AGG | 0.760797 | 4_3:+45640519 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTGTTTTCCAAAAAATT+TGG | - | chr4_3:45639441-45639460 | Msa0643140:three_prime_UTR | 15.0% |
| !!! | TCTTTGATTTTTAATTCATT+TGG | - | chr4_3:45639628-45639647 | Msa0643140:three_prime_UTR | 15.0% |
| !! | ATATTTAGTGATTAAAATGA+CGG | - | chr4_3:45640094-45640113 | Msa0643140:intron | 15.0% |
| !!! | CTATTTCATTTTGTATTTAT+AGG | - | chr4_3:45640197-45640216 | Msa0643140:intron | 15.0% |
| !!! | TTTATTTTCAAATGTTTTCT+TGG | - | chr4_3:45641028-45641047 | Msa0643140:three_prime_UTR | 15.0% |
| !! | TATTAAATGGTTTAGTATAA+AGG | - | chr4_3:45641207-45641226 | Msa0643140:CDS | 15.0% |
| !! | ATTAAATGGTTTAGTATAAA+GGG | - | chr4_3:45641208-45641227 | Msa0643140:CDS | 15.0% |
| !!! | TCTGATTTTATTTTTTTTGT+AGG | - | chr4_3:45641888-45641907 | Msa0643140:CDS | 15.0% |
| !! | ATTTAAACAAAATAATGTCA+GGG | + | chr4_3:45642287-45642306 | None:intergenic | 15.0% |
| !! | AATTTAAACAAAATAATGTC+AGG | + | chr4_3:45642288-45642307 | None:intergenic | 15.0% |
| !! | AAAATTTGAAAACCAACAAA+AGG | + | chr4_3:45639408-45639427 | None:intergenic | 20.0% |
| !!! | TTCATTTTAGATTGGTAATT+TGG | + | chr4_3:45639545-45639564 | None:intergenic | 20.0% |
| !! | AGAAAACAGATAAAATTAGT+TGG | - | chr4_3:45639790-45639809 | Msa0643140:three_prime_UTR | 20.0% |
| !!! | GTATCTTTTAATAGTCAATT+TGG | - | chr4_3:45639924-45639943 | Msa0643140:intron | 20.0% |
| !!! | TTTTAATCACTAAATATGTG+AGG | + | chr4_3:45640091-45640110 | None:intergenic | 20.0% |
| !!! | ATTATTTTCGTAAGATAAGT+TGG | + | chr4_3:45640745-45640764 | None:intergenic | 20.0% |
| !! | AAAAGATCTTTATTGGATTT+GGG | + | chr4_3:45641563-45641582 | None:intergenic | 20.0% |
| !! | AAATCAGAAAAGATCTTTAT+TGG | + | chr4_3:45641570-45641589 | None:intergenic | 20.0% |
| !! | ATCTTAAAAAATCAGAAATC+AGG | + | chr4_3:45642585-45642604 | None:intergenic | 20.0% |
| !! | CACGTTACAATTTAATTATT+TGG | - | chr4_3:45643503-45643522 | Msa0643140:five_prime_UTR | 20.0% |
| ! | ACCACTTAGTTAATAGTTAT+TGG | + | chr4_3:45638946-45638965 | None:intergenic | 25.0% |
| ! | TAACTATTAACTAAGTGGTA+TGG | - | chr4_3:45638947-45638966 | Msa0643140:three_prime_UTR | 25.0% |
| ! | TTAAACTTTCCAAGTTATTC+TGG | - | chr4_3:45639036-45639055 | Msa0643140:three_prime_UTR | 25.0% |
| !! | AATGAATAGTATCCTTTTGT+TGG | - | chr4_3:45639393-45639412 | Msa0643140:three_prime_UTR | 25.0% |
| !!! | ATCAAAAGCTCCAAATTTTT+TGG | + | chr4_3:45639454-45639473 | None:intergenic | 25.0% |
| ! | AACTGCATAATTCAAAGTAA+AGG | + | chr4_3:45639489-45639508 | None:intergenic | 25.0% |
| !! | AGAGATGATTCATTTTAGAT+TGG | + | chr4_3:45639553-45639572 | None:intergenic | 25.0% |
| !!! | TATTTGTTATCAACGATCAA+TGG | - | chr4_3:45639579-45639598 | Msa0643140:three_prime_UTR | 25.0% |
| !! | TACTATAGTTTTTGACATAC+TGG | + | chr4_3:45639732-45639751 | None:intergenic | 25.0% |
| ! | CAAAAACTATAGTACTTTGT+CGG | - | chr4_3:45639738-45639757 | Msa0643140:three_prime_UTR | 25.0% |
| ! | ACAATTGAACTGATTAAAAG+TGG | + | chr4_3:45639816-45639835 | None:intergenic | 25.0% |
| ! | AGTTCAATTGTATTGTAGTT+TGG | - | chr4_3:45639825-45639844 | Msa0643140:three_prime_UTR | 25.0% |
| ! | ATAAGAAAATTCACTCTCTT+GGG | + | chr4_3:45640387-45640406 | None:intergenic | 25.0% |
| ! | GACAATGATCTTGATATTAA+AGG | + | chr4_3:45640588-45640607 | None:intergenic | 25.0% |
| ! | TTGGTAAAATATTTACTCCT+AGG | - | chr4_3:45640610-45640629 | Msa0643140:intron | 25.0% |
| !!! | TTACCATCATTTTAACTTGT+TGG | - | chr4_3:45640769-45640788 | Msa0643140:three_prime_UTR | 25.0% |
| ! | AAACCAACAAGTTAAAATGA+TGG | + | chr4_3:45640775-45640794 | None:intergenic | 25.0% |
| !! | ACAAAGAATGTGCTATTAAA+TGG | - | chr4_3:45641194-45641213 | Msa0643140:CDS | 25.0% |
| !!! | CTAGTTTTGTATGATAAACA+TGG | - | chr4_3:45641392-45641411 | Msa0643140:CDS | 25.0% |
| ! | TTGTATGATAAACATGGATT+TGG | - | chr4_3:45641398-45641417 | Msa0643140:CDS | 25.0% |
| ! | GAAAAGATCTTTATTGGATT+TGG | + | chr4_3:45641564-45641583 | None:intergenic | 25.0% |
| ! | AATTGAGCAGACAAATAAAA+TGG | + | chr4_3:45641671-45641690 | None:intergenic | 25.0% |
| ! | TTGCTCAAGAAAACAAAAAT+AGG | + | chr4_3:45641744-45641763 | None:intergenic | 25.0% |
| ! | AAAATTTGACAGTTCATTGT+TGG | + | chr4_3:45641788-45641807 | None:intergenic | 25.0% |
| ! | AATAAAATCAGAAGCTACTT+TGG | + | chr4_3:45641880-45641899 | None:intergenic | 25.0% |
| ! | ATGATATACAAAAGTTGCAA+TGG | + | chr4_3:45642129-45642148 | None:intergenic | 25.0% |
| !! | ATTGCAACTTTTGTATATCA+TGG | - | chr4_3:45642128-45642147 | Msa0643140:CDS | 25.0% |
| ! | GTATAATCACATGTATCAAT+TGG | + | chr4_3:45642195-45642214 | None:intergenic | 25.0% |
| ! | TTCTAATGTTTCTCTATGTA+GGG | + | chr4_3:45642561-45642580 | None:intergenic | 25.0% |
| ! | ATTCTAATGTTTCTCTATGT+AGG | + | chr4_3:45642562-45642581 | None:intergenic | 25.0% |
| ! | TGCATAACTTATTGTGTATA+GGG | - | chr4_3:45642912-45642931 | Msa0643140:intron | 25.0% |
| ! | ACTTTAATCACACATCTATA+TGG | - | chr4_3:45642946-45642965 | Msa0643140:intron | 25.0% |
| ! | CTTTAATCACACATCTATAT+GGG | - | chr4_3:45642947-45642966 | Msa0643140:intron | 25.0% |
| ! | AATTCAGTGAAATTATGTGT+CGG | - | chr4_3:45643113-45643132 | Msa0643140:intron | 25.0% |
| !!! | TTTTTGGCTTTCTTTTTTGT+AGG | - | chr4_3:45643250-45643269 | Msa0643140:intron | 25.0% |
| ! | AAGTAACTACATATTGCATT+TGG | + | chr4_3:45643379-45643398 | None:intergenic | 25.0% |
| !! | ATGTAGTTACTTTACTTACA+TGG | - | chr4_3:45643387-45643406 | Msa0643140:CDS | 25.0% |
| !! | TGTATTTCCTTCTATTTTCT+AGG | - | chr4_3:45643413-45643432 | Msa0643140:exon | 25.0% |
| !! | TAGTTACTTTACTTACATGA+AGG | - | chr4_3:45643536-45643555 | Msa0643140:five_prime_UTR | 25.0% |
| GCCAATAACTATTAACTAAG+TGG | - | chr4_3:45638942-45638961 | Msa0643140:three_prime_UTR | 30.0% | |
| AGAACAAAACCAGAATAACT+TGG | + | chr4_3:45639048-45639067 | None:intergenic | 30.0% | |
| AGAAAATAAACATGTCACTG+AGG | - | chr4_3:45639113-45639132 | Msa0643140:three_prime_UTR | 30.0% | |
| !! | TTTCCTTCTTCTCTTTGTTT+TGG | - | chr4_3:45639227-45639246 | Msa0643140:three_prime_UTR | 30.0% |
| !!! | TCTCTTTGTTTTGGTTCTTT+TGG | - | chr4_3:45639236-45639255 | Msa0643140:three_prime_UTR | 30.0% |
| AGTGATGTTTCTTCTTACTA+AGG | - | chr4_3:45639259-45639278 | Msa0643140:three_prime_UTR | 30.0% | |
| CTTCTTACTAAGGTTCTTTA+AGG | - | chr4_3:45639269-45639288 | Msa0643140:three_prime_UTR | 30.0% | |
| !! | TGTGTTTTCTGTTAGTTTCA+TGG | - | chr4_3:45639987-45640006 | Msa0643140:intron | 30.0% |
| TAATCACTAAATATGTGAGG+TGG | + | chr4_3:45640088-45640107 | None:intergenic | 30.0% | |
| GATTAAAATGACGGTTTACT+CGG | - | chr4_3:45640103-45640122 | Msa0643140:intron | 30.0% | |
| ! | ATAGGATGATGATGATTCAA+TGG | - | chr4_3:45640215-45640234 | Msa0643140:intron | 30.0% |
| ! | TAGGATGATGATGATTCAAT+GGG | - | chr4_3:45640216-45640235 | Msa0643140:intron | 30.0% |
| !! | AGAAGATTTTGTTTCTTCCT+GGG | + | chr4_3:45640270-45640289 | None:intergenic | 30.0% |
| CATAAGAAAATTCACTCTCT+TGG | + | chr4_3:45640388-45640407 | None:intergenic | 30.0% | |
| !!! | CTTATGGATGATTTGCTTTT+TGG | + | chr4_3:45640462-45640481 | None:intergenic | 30.0% |
| ! | CTATACCTGAAACTCAATTT+TGG | + | chr4_3:45640495-45640514 | None:intergenic | 30.0% |
| ! | CAAAATTGAGTTTCAGGTAT+AGG | - | chr4_3:45640493-45640512 | Msa0643140:intron | 30.0% |
| ! | TTTTGCAGAAAAAAGAGACT+CGG | - | chr4_3:45640796-45640815 | Msa0643140:three_prime_UTR | 30.0% |
| TATACTATACCAGTATCCTT+TGG | + | chr4_3:45640960-45640979 | None:intergenic | 30.0% | |
| !! | TCTTCCATTTTTCATGAATG+TGG | + | chr4_3:45641006-45641025 | None:intergenic | 30.0% |
| AAAATGGTTCATGATTCTTG+AGG | + | chr4_3:45641655-45641674 | None:intergenic | 30.0% | |
| ! | ATTTGTCTGCTCAATTTTGT+AGG | - | chr4_3:45641675-45641694 | Msa0643140:CDS | 30.0% |
| ! | TTTGTCTGCTCAATTTTGTA+GGG | - | chr4_3:45641676-45641695 | Msa0643140:CDS | 30.0% |
| ! | TTGTTTTCTTGAGCAATTGT+TGG | - | chr4_3:45641748-45641767 | Msa0643140:intron | 30.0% |
| !!! | TTTTTTGTAGGTGACGAAAA+TGG | - | chr4_3:45641900-45641919 | Msa0643140:CDS | 30.0% |
| ! | TTTTTGTAGGTGACGAAAAT+GGG | - | chr4_3:45641901-45641920 | Msa0643140:CDS | 30.0% |
| AATATAGTTCACGAAGAAAG+CGG | + | chr4_3:45642404-45642423 | None:intergenic | 30.0% | |
| ACTTATTCGTTAGAACGAAT+CGG | + | chr4_3:45642502-45642521 | None:intergenic | 30.0% | |
| ! | TTAAGATATTTGTCACTTGC+AGG | - | chr4_3:45642598-45642617 | Msa0643140:intron | 30.0% |
| TTTGCACTATAGATTGATTG+TGG | + | chr4_3:45642829-45642848 | None:intergenic | 30.0% | |
| CTATACACAATAAGTTATGC+AGG | + | chr4_3:45642913-45642932 | None:intergenic | 30.0% | |
| CTGCATAACTTATTGTGTAT+AGG | - | chr4_3:45642911-45642930 | Msa0643140:intron | 30.0% | |
| TAACTTATTGTGTATAGGGT+AGG | - | chr4_3:45642916-45642935 | Msa0643140:intron | 30.0% | |
| AACTTATTGTGTATAGGGTA+GGG | - | chr4_3:45642917-45642936 | Msa0643140:intron | 30.0% | |
| ! | TGACACAATGATTTTGCTTT+AGG | - | chr4_3:45643281-45643300 | Msa0643140:intron | 30.0% |
| GTTGAGGAAATGTGTTTATT+AGG | - | chr4_3:45643322-45643341 | Msa0643140:CDS | 30.0% | |
| ! | GATTTTCCACATCTTCAATT+TGG | - | chr4_3:45643445-45643464 | Msa0643140:five_prime_UTR | 30.0% |
| AGTAGTACCTTGTGAATAAC+AGG | + | chr4_3:45639192-45639211 | None:intergenic | 35.0% | |
| GAACCAAAACAAAGAGAAGA+AGG | + | chr4_3:45639233-45639252 | None:intergenic | 35.0% | |
| !! | ATAAGGATTGGTTTGAGTGT+TGG | + | chr4_3:45639337-45639356 | None:intergenic | 35.0% |
| AACACTCAAACCAATCCTTA+TGG | - | chr4_3:45639336-45639355 | Msa0643140:three_prime_UTR | 35.0% | |
| ACTTTGTCGGTATAGATGAA+TGG | - | chr4_3:45639751-45639770 | Msa0643140:three_prime_UTR | 35.0% | |
| CTTTGTCGGTATAGATGAAT+GGG | - | chr4_3:45639752-45639771 | Msa0643140:three_prime_UTR | 35.0% | |
| TAGTCCTTGAATGTATGAGA+CGG | - | chr4_3:45639872-45639891 | Msa0643140:three_prime_UTR | 35.0% | |
| ATAACCGTCTCATACATTCA+AGG | + | chr4_3:45639879-45639898 | None:intergenic | 35.0% | |
| TTCTCGTATGTGTCTTTCAT+CGG | - | chr4_3:45639947-45639966 | Msa0643140:intron | 35.0% | |
| !! | GAGAAGATTTTGTTTCTTCC+TGG | + | chr4_3:45640271-45640290 | None:intergenic | 35.0% |
| ! | GTGTTCTTGATGGTATTTCT+AGG | + | chr4_3:45640293-45640312 | None:intergenic | 35.0% |
| AAATCTTCTGAACACTCTTC+TGG | + | chr4_3:45640315-45640334 | None:intergenic | 35.0% | |
| ! | TTTTCTTATGACTTCTCGCT+CGG | - | chr4_3:45640398-45640417 | Msa0643140:intron | 35.0% |
| ! | TTTTGGCAGCATCTTTCTTA+TGG | + | chr4_3:45640478-45640497 | None:intergenic | 35.0% |
| ATATCAAGATCATTGTCGCT+TGG | - | chr4_3:45640591-45640610 | Msa0643140:intron | 35.0% | |
| ! | GATGAAGTTCTTTTCATCCT+AGG | + | chr4_3:45640630-45640649 | None:intergenic | 35.0% |
| AGAACTTCATCATTGCCATT+AGG | - | chr4_3:45640639-45640658 | Msa0643140:intron | 35.0% | |
| TCATTGCCATTAGGAGAAAT+TGG | - | chr4_3:45640648-45640667 | Msa0643140:intron | 35.0% | |
| GAATGTCCAATTTCTCCTAA+TGG | + | chr4_3:45640657-45640676 | None:intergenic | 35.0% | |
| !!! | ACTTTTGTCCTTGCTGTTAT+TGG | + | chr4_3:45640853-45640872 | None:intergenic | 35.0% |
| ! | ACAGCAAGGACAAAAGTATA+AGG | - | chr4_3:45640856-45640875 | Msa0643140:three_prime_UTR | 35.0% |
| GCATCCACATTCATGAAAAA+TGG | - | chr4_3:45640999-45641018 | Msa0643140:three_prime_UTR | 35.0% | |
| ! | ATCGAAGATGATGATGATGA+TGG | - | chr4_3:45641058-45641077 | Msa0643140:three_prime_UTR | 35.0% |
| TGAAGATATACCTGAAGAAG+AGG | - | chr4_3:45641081-45641100 | Msa0643140:three_prime_UTR | 35.0% | |
| TGTCTGGTTGAATTATGTGA+AGG | - | chr4_3:45641118-45641137 | Msa0643140:CDS | 35.0% | |
| AAGTTGGAATGTAGCTGTAA+AGG | - | chr4_3:45641154-45641173 | Msa0643140:CDS | 35.0% | |
| TCCAATGAATGAGTGAGTTA+TGG | - | chr4_3:45641589-45641608 | Msa0643140:CDS | 35.0% | |
| TATGGCTATATGCTTCGATT+AGG | - | chr4_3:45641607-45641626 | Msa0643140:CDS | 35.0% | |
| ACAGGAAAATGGAAGAGATA+TGG | + | chr4_3:45641941-45641960 | None:intergenic | 35.0% | |
| ! | CTTCCATTTTCCTGTGTATT+AGG | - | chr4_3:45641946-45641965 | Msa0643140:CDS | 35.0% |
| ACAAAATAATGTCAGGGTTG+TGG | + | chr4_3:45642281-45642300 | None:intergenic | 35.0% | |
| GTTTAAATTTGTGTCCAGTG+AGG | - | chr4_3:45642299-45642318 | Msa0643140:intron | 35.0% | |
| GGGATTTGTCTGATTGAATT+AGG | + | chr4_3:45642481-45642500 | None:intergenic | 35.0% | |
| CTTATTCGTTAGAACGAATC+GGG | + | chr4_3:45642501-45642520 | None:intergenic | 35.0% | |
| TAGATTGATTGTGGTTGGAT+TGG | + | chr4_3:45642820-45642839 | None:intergenic | 35.0% | |
| CACTATAGATTGATTGTGGT+TGG | + | chr4_3:45642825-45642844 | None:intergenic | 35.0% | |
| GAATATAGCTTCTCTTGCTA+TGG | - | chr4_3:45642989-45643008 | Msa0643140:intron | 35.0% | |
| ! | TTGTACTGATCTATGAAGCA+CGG | - | chr4_3:45643029-45643048 | Msa0643140:intron | 35.0% |
| TATGAAGCACAAACACTCAT+CGG | + | chr4_3:45643191-45643210 | None:intergenic | 35.0% | |
| ! | ATGAAAACCAGAAGGGTTTT+TGG | - | chr4_3:45643234-45643253 | Msa0643140:intron | 35.0% |
| !!! | GCTTTCTTTTTTGTAGGCTT+GGG | - | chr4_3:45643256-45643275 | Msa0643140:intron | 35.0% |
| CTCTAGTCCTAGAAAATAGA+AGG | + | chr4_3:45643423-45643442 | None:intergenic | 35.0% | |
| CTAAGTGGTATGGCTATCAT+TGG | - | chr4_3:45638957-45638976 | Msa0643140:three_prime_UTR | 40.0% | |
| TCTTCCTCCTGTTATTCACA+AGG | - | chr4_3:45639182-45639201 | Msa0643140:three_prime_UTR | 40.0% | |
| AGTACCTTGTGAATAACAGG+AGG | + | chr4_3:45639189-45639208 | None:intergenic | 40.0% | |
| ACTCAAACCAATCCTTATGG+TGG | - | chr4_3:45639339-45639358 | Msa0643140:three_prime_UTR | 40.0% | |
| !! | AGATTTTGTTTCTTCCTGGG+AGG | + | chr4_3:45640267-45640286 | None:intergenic | 40.0% |
| AAATTCACTCTCTTGGGAGT+AGG | + | chr4_3:45640381-45640400 | None:intergenic | 40.0% | |
| GATCCAGGAGAGTTATTTGT+CGG | + | chr4_3:45640432-45640451 | None:intergenic | 40.0% | |
| TGCTGCCAAAATTGAGTTTC+AGG | - | chr4_3:45640487-45640506 | Msa0643140:intron | 40.0% | |
| TCAAACCCTGAATCTACTCA+TGG | - | chr4_3:45640675-45640694 | Msa0643140:intron | 40.0% | |
| TTCCACCATGAGTAGATTCA+GGG | + | chr4_3:45640683-45640702 | None:intergenic | 40.0% | |
| TTTCCACCATGAGTAGATTC+AGG | + | chr4_3:45640684-45640703 | None:intergenic | 40.0% | |
| ! | GAATCTACTCATGGTGGAAA+TGG | - | chr4_3:45640684-45640703 | Msa0643140:intron | 40.0% |
| ! | GCAAGGACAAAAGTATAAGG+AGG | - | chr4_3:45640859-45640878 | Msa0643140:three_prime_UTR | 40.0% |
| ! | GGACAAAAGTATAAGGAGGA+TGG | - | chr4_3:45640863-45640882 | Msa0643140:three_prime_UTR | 40.0% |
| TCATTTCCTTCCTTTACTCG+AGG | + | chr4_3:45640918-45640937 | None:intergenic | 40.0% | |
| ACTATACCAGTATCCTTTGG+CGG | + | chr4_3:45640957-45640976 | None:intergenic | 40.0% | |
| AGATATACCTGAAGAAGAGG+CGG | - | chr4_3:45641084-45641103 | Msa0643140:three_prime_UTR | 40.0% | |
| CTGGTTGAATTATGTGAAGG+AGG | - | chr4_3:45641121-45641140 | Msa0643140:CDS | 40.0% | |
| ACAGCTACATTCCAACTTGA+AGG | + | chr4_3:45641152-45641171 | None:intergenic | 40.0% | |
| ! | CTGTAAAGGTGAACTTGCTT+TGG | - | chr4_3:45641168-45641187 | Msa0643140:CDS | 40.0% |
| GACATGTGATGTCTGCAAAA+CGG | - | chr4_3:45641237-45641256 | Msa0643140:CDS | 40.0% | |
| ACCTTCCTGTCACTCTATTA+TGG | - | chr4_3:45641269-45641288 | Msa0643140:CDS | 40.0% | |
| TCCATAATAGAGTGACAGGA+AGG | + | chr4_3:45641273-45641292 | None:intergenic | 40.0% | |
| TGGATCCATAATAGAGTGAC+AGG | + | chr4_3:45641277-45641296 | None:intergenic | 40.0% | |
| ! | GGATCCAAAGTGTTCGAAAT+CGG | - | chr4_3:45641290-45641309 | Msa0643140:CDS | 40.0% |
| CATTCCGATTTCGAACACTT+TGG | + | chr4_3:45641297-45641316 | None:intergenic | 40.0% | |
| ! | CAAAGTGTTCGAAATCGGAA+TGG | - | chr4_3:45641295-45641314 | Msa0643140:CDS | 40.0% |
| ! | GTGTGATCAGACTTCAAGTT+CGG | - | chr4_3:45641464-45641483 | Msa0643140:intron | 40.0% |
| TAGACCGTCTAATCCAGATA+TGG | - | chr4_3:45641499-45641518 | Msa0643140:intron | 40.0% | |
| ! | TCAGCCATATCTGGATTAGA+CGG | + | chr4_3:45641506-45641525 | None:intergenic | 40.0% |
| GCCATAACTCACTCATTCAT+TGG | + | chr4_3:45641593-45641612 | None:intergenic | 40.0% | |
| ! | CTGCTCAATTTTGTAGGGTT+TGG | - | chr4_3:45641681-45641700 | Msa0643140:CDS | 40.0% |
| ATGCTAACAATGACAAGCAC+CGG | + | chr4_3:45641716-45641735 | None:intergenic | 40.0% | |
| GCTTGTCATTGTTAGCATGT+TGG | - | chr4_3:45641718-45641737 | Msa0643140:intron | 40.0% | |
| AGGCCTAATACACAGGAAAA+TGG | + | chr4_3:45641952-45641971 | None:intergenic | 40.0% | |
| TCCATGACATCATCAACCAT+GGG | - | chr4_3:45641979-45641998 | Msa0643140:CDS | 40.0% | |
| ! | CGCGCATATATTTTACTCCT+TGG | - | chr4_3:45642375-45642394 | Msa0643140:intron | 40.0% |
| ATCCTTCTTGCAACATTTGC+TGG | - | chr4_3:45642644-45642663 | Msa0643140:intron | 40.0% | |
| AACCAGCAAATGTTGCAAGA+AGG | + | chr4_3:45642649-45642668 | None:intergenic | 40.0% | |
| !! | CTTGCAACATTTGCTGGTTT+CGG | - | chr4_3:45642650-45642669 | Msa0643140:intron | 40.0% |
| !! | TGCTTGTGGAGTTTTTCAGA+TGG | - | chr4_3:45642696-45642715 | Msa0643140:intron | 40.0% |
| !! | TGGAGTTTTTCAGATGGAGA+AGG | - | chr4_3:45642702-45642721 | Msa0643140:intron | 40.0% |
| ! | TTTTCAGATGGAGAAGGAGA+TGG | - | chr4_3:45642708-45642727 | Msa0643140:intron | 40.0% |
| GATGAGTGTTTGTGCTTCAT+AGG | - | chr4_3:45643190-45643209 | Msa0643140:intron | 40.0% | |
| !! | TTGTGCTTCATAGGTACTGA+TGG | - | chr4_3:45643199-45643218 | Msa0643140:intron | 40.0% |
| TTCAGCACATGAAAACCAGA+AGG | - | chr4_3:45643226-45643245 | Msa0643140:intron | 40.0% | |
| TCAGCACATGAAAACCAGAA+GGG | - | chr4_3:45643227-45643246 | Msa0643140:intron | 40.0% | |
| AAGAAAGCCAAAAACCCTTC+TGG | + | chr4_3:45643244-45643263 | None:intergenic | 40.0% | |
| !!! | GGCTTTCTTTTTTGTAGGCT+TGG | - | chr4_3:45643255-45643274 | Msa0643140:intron | 40.0% |
| TTAGGTCAAAGTGAGAGTGA+AGG | - | chr4_3:45643299-45643318 | Msa0643140:intron | 40.0% | |
| TAGGTCAAAGTGAGAGTGAA+GGG | - | chr4_3:45643300-45643319 | Msa0643140:intron | 40.0% | |
| AGCACTCCAAATTGAAGATG+TGG | + | chr4_3:45643454-45643473 | None:intergenic | 40.0% | |
| !! | TCAATTTGGAGTGCTGCTTA+TGG | - | chr4_3:45643459-45643478 | Msa0643140:five_prime_UTR | 40.0% |
| !! | AGGATTGGTTTGAGTGTTGG+TGG | + | chr4_3:45639334-45639353 | None:intergenic | 45.0% |
| CAAACCAATCCTTATGGTGG+TGG | - | chr4_3:45639342-45639361 | Msa0643140:three_prime_UTR | 45.0% | |
| AACTCCACCACCATAAGGAT+TGG | + | chr4_3:45639349-45639368 | None:intergenic | 45.0% | |
| AAGCAAACTCCACCACCATA+AGG | + | chr4_3:45639354-45639373 | None:intergenic | 45.0% | |
| !! | GTGGTGGAGTTTGCTTTTCT+GGG | - | chr4_3:45639358-45639377 | Msa0643140:three_prime_UTR | 45.0% |
| AAACATCACATGTTCCTCCC+AGG | - | chr4_3:45640250-45640269 | Msa0643140:intron | 45.0% | |
| CACTCTTCTGGTGTTCTTGA+TGG | + | chr4_3:45640303-45640322 | None:intergenic | 45.0% | |
| !!! | CTTTTTGGTGTTGCAGATCC+AGG | + | chr4_3:45640447-45640466 | None:intergenic | 45.0% |
| ! | GAGTTTCAGGTATAGGACAC+CGG | - | chr4_3:45640500-45640519 | Msa0643140:intron | 45.0% |
| TTCGCCTTCTCAATATCTGC+CGG | + | chr4_3:45640522-45640541 | None:intergenic | 45.0% | |
| AGAAGGCGAATACACCAACT+CGG | - | chr4_3:45640532-45640551 | Msa0643140:three_prime_UTR | 45.0% | |
| ! | CTTTTCTCGAGTGCTTGAAG+AGG | + | chr4_3:45640565-45640584 | None:intergenic | 45.0% |
| AACCCTGAATCTACTCATGG+TGG | - | chr4_3:45640678-45640697 | Msa0643140:intron | 45.0% | |
| ! | CATGGTGGAAATGGAAGTGT+TGG | - | chr4_3:45640693-45640712 | Msa0643140:intron | 45.0% |
| AATGCCTGCCAATAACAGCA+AGG | - | chr4_3:45640842-45640861 | Msa0643140:three_prime_UTR | 45.0% | |
| !! | TTGTCCTTGCTGTTATTGGC+AGG | + | chr4_3:45640849-45640868 | None:intergenic | 45.0% |
| TCCTTCTACTCCTCGAGTAA+AGG | - | chr4_3:45640905-45640924 | Msa0643140:three_prime_UTR | 45.0% | |
| TCCTTTACTCGAGGAGTAGA+AGG | + | chr4_3:45640909-45640928 | None:intergenic | 45.0% | |
| TCTACTCCTCGAGTAAAGGA+AGG | - | chr4_3:45640909-45640928 | Msa0643140:three_prime_UTR | 45.0% | |
| TATACCAGTATCCTTTGGCG+GGG | + | chr4_3:45640955-45640974 | None:intergenic | 45.0% | |
| CTATACCAGTATCCTTTGGC+GGG | + | chr4_3:45640956-45640975 | None:intergenic | 45.0% | |
| ATGTGATGTCTGCAAAACGG+AGG | - | chr4_3:45641240-45641259 | Msa0643140:CDS | 45.0% | |
| AGTGTTCGAAATCGGAATGG+TGG | - | chr4_3:45641298-45641317 | Msa0643140:CDS | 45.0% | |
| GCTCAGCCTGAAGATGTAAA+CGG | - | chr4_3:45641331-45641350 | Msa0643140:CDS | 45.0% | |
| CTCAGCCTGAAGATGTAAAC+GGG | - | chr4_3:45641332-45641351 | Msa0643140:CDS | 45.0% | |
| CTGTACCCGTTTACATCTTC+AGG | + | chr4_3:45641340-45641359 | None:intergenic | 45.0% | |
| CTGAAGATGTAAACGGGTAC+AGG | - | chr4_3:45641338-45641357 | Msa0643140:CDS | 45.0% | |
| TGCTTCGATTAGGAGCTTCA+TGG | - | chr4_3:45641617-45641636 | Msa0643140:CDS | 45.0% | |
| TAGGGTTTGGCAAGAAGTTC+CGG | - | chr4_3:45641694-45641713 | Msa0643140:CDS | 45.0% | |
| TAGGTGACGAAAATGGGAAC+TGG | - | chr4_3:45641907-45641926 | Msa0643140:CDS | 45.0% | |
| !! | CATGGTTGATGATGTCATGG+AGG | + | chr4_3:45641980-45641999 | None:intergenic | 45.0% |
| CTCCATGACATCATCAACCA+TGG | - | chr4_3:45641978-45641997 | Msa0643140:CDS | 45.0% | |
| !! | ACCCATGGTTGATGATGTCA+TGG | + | chr4_3:45641983-45642002 | None:intergenic | 45.0% |
| TGACATCATCAACCATGGGT+AGG | - | chr4_3:45641983-45642002 | Msa0643140:CDS | 45.0% | |
| ATGTGTTGCAAACCTACCCA+TGG | + | chr4_3:45641998-45642017 | None:intergenic | 45.0% | |
| GTAGATCAGTCGAAGTCAGT+TGG | - | chr4_3:45642081-45642100 | Msa0643140:intron | 45.0% | |
| ! | GGTTTCGGTGTAGTAATGAG+TGG | - | chr4_3:45642665-45642684 | Msa0643140:intron | 45.0% |
| GAGTGGAAGTTCTATGCTTG+TGG | - | chr4_3:45642682-45642701 | Msa0643140:intron | 45.0% | |
| GCTTCATTAGAGCAACAGCA+TGG | - | chr4_3:45642734-45642753 | Msa0643140:intron | 45.0% | |
| TGTTGTCCTGCTTGTGTCAT+CGG | + | chr4_3:45642767-45642786 | None:intergenic | 45.0% | |
| ATGAAGCACGGATACAGACA+CGG | - | chr4_3:45643041-45643060 | Msa0643140:intron | 45.0% | |
| ! | TCATCGGATTAGATGTGTCC+CGG | + | chr4_3:45643175-45643194 | None:intergenic | 45.0% |
| AAAGTGAGAGTGAAGGGTTG+AGG | - | chr4_3:45643306-45643325 | Msa0643140:intron | 45.0% | |
| !! | ATTTGGAGTGCTGCTTATGG+AGG | - | chr4_3:45643462-45643481 | Msa0643140:five_prime_UTR | 45.0% |
| !! | TATTATAAATAAATTCAAAA+TGG | + | chr4_3:45642061-45642080 | None:intergenic | 5.0% |
| !!! | GGTGGTGGAGTTTGCTTTTC+TGG | - | chr4_3:45639357-45639376 | Msa0643140:three_prime_UTR | 50.0% |
| !! | GGAGTAGGACTTGGTGTCAT+TGG | + | chr4_3:45640354-45640373 | None:intergenic | 50.0% |
| GCTCCGACAAATAACTCTCC+TGG | - | chr4_3:45640426-45640445 | Msa0643140:intron | 50.0% | |
| GACACCGGCAGATATTGAGA+AGG | - | chr4_3:45640515-45640534 | Msa0643140:intron | 50.0% | |
| GAAGGCGAATACACCAACTC+GGG | - | chr4_3:45640533-45640552 | Msa0643140:three_prime_UTR | 50.0% | |
| GAAGAGGAAACTTCCCGAGT+TGG | + | chr4_3:45640549-45640568 | None:intergenic | 50.0% | |
| !! | GGTGGAAATGGAAGTGTTGG+TGG | - | chr4_3:45640696-45640715 | Msa0643140:intron | 50.0% |
| AGGAGGTGAGACCTTCAAGT+TGG | - | chr4_3:45641138-45641157 | Msa0643140:CDS | 50.0% | |
| CTGATCACACGATCCAGATG+TGG | + | chr4_3:45641454-45641473 | None:intergenic | 50.0% | |
| TGCACACAGTCAGCCATATC+TGG | + | chr4_3:45641515-45641534 | None:intergenic | 50.0% | |
| ATGATGTCATGGAGGAGAGC+AGG | + | chr4_3:45641972-45641991 | None:intergenic | 50.0% | |
| ATTTGTGTCCAGTGAGGAGC+AGG | - | chr4_3:45642305-45642324 | Msa0643140:intron | 50.0% | |
| CATATGAACCTGCTCCTCAC+TGG | + | chr4_3:45642316-45642335 | None:intergenic | 50.0% | |
| CAGTGAGGAGCAGGTTCATA+TGG | - | chr4_3:45642314-45642333 | Msa0643140:intron | 50.0% | |
| ! | TGCATCCTTCCAGTTTGCTC+TGG | - | chr4_3:45642342-45642361 | Msa0643140:intron | 50.0% |
| ! | ATCCTTCCAGTTTGCTCTGG+TGG | - | chr4_3:45642345-45642364 | Msa0643140:intron | 50.0% |
| AACCACCAGAGCAAACTGGA+AGG | + | chr4_3:45642350-45642369 | None:intergenic | 50.0% | |
| AGAGAACCACCAGAGCAAAC+TGG | + | chr4_3:45642354-45642373 | None:intergenic | 50.0% | |
| CACGAAGAAAGCGGTTACCA+AGG | + | chr4_3:45642395-45642414 | None:intergenic | 50.0% | |
| CTGCTTGTGTCATCGGTAGA+GGG | + | chr4_3:45642760-45642779 | None:intergenic | 50.0% | |
| ACAGTAACAACGCCACGTTC+AGG | - | chr4_3:45642794-45642813 | Msa0643140:intron | 50.0% | |
| ACGGATACAGACACGGACAT+TGG | - | chr4_3:45643048-45643067 | Msa0643140:intron | 50.0% | |
| GATTAGATGTGTCCCGGTGT+CGG | + | chr4_3:45643169-45643188 | None:intergenic | 50.0% | |
| GTAGGAGCTGGAGTAGGACT+TGG | + | chr4_3:45640363-45640382 | None:intergenic | 55.0% | |
| TTGGGAGTAGGAGCTGGAGT+AGG | + | chr4_3:45640369-45640388 | None:intergenic | 55.0% | |
| ACTCTCTTGGGAGTAGGAGC+TGG | + | chr4_3:45640375-45640394 | None:intergenic | 55.0% | |
| CTACACACCGCCTCTTCTTC+AGG | + | chr4_3:45641094-45641113 | None:intergenic | 55.0% | |
| GGCGGTGTGTAGAATCTGTC+TGG | - | chr4_3:45641102-45641121 | Msa0643140:exon | 55.0% | |
| TGGCTGACTGTGTGCAGTGA+CGG | - | chr4_3:45641519-45641538 | Msa0643140:intron | 55.0% | |
| GGAGAGCAGGCCTAATACAC+AGG | + | chr4_3:45641959-45641978 | None:intergenic | 55.0% | |
| CAGATGGAGAAGGAGATGGC+AGG | - | chr4_3:45642712-45642731 | Msa0643140:intron | 55.0% | |
| CCTGCTTGTGTCATCGGTAG+AGG | + | chr4_3:45642761-45642780 | None:intergenic | 55.0% | |
| CCTCTACCGATGACACAAGC+AGG | - | chr4_3:45642758-45642777 | Msa0643140:intron | 55.0% | |
| CGTGGCGTTGTTACTGTTCG+AGG | + | chr4_3:45642791-45642810 | None:intergenic | 55.0% | |
| !! | TGGTTGGATTGGCCTGAACG+TGG | + | chr4_3:45642809-45642828 | None:intergenic | 55.0% |
| GTTGAAGACGTCCCCGCCAA+AGG | - | chr4_3:45640941-45640960 | Msa0643140:three_prime_UTR | 60.0% | |
| ACGTCCCCGCCAAAGGATAC+TGG | - | chr4_3:45640948-45640967 | Msa0643140:three_prime_UTR | 60.0% | |
| TGCACGCAGTCAGCCACATC+TGG | - | chr4_3:45641438-45641457 | Msa0643140:CDS | 60.0% | |
| GGCTGACTGTGTGCAGTGAC+GGG | - | chr4_3:45641520-45641539 | Msa0643140:intron | 60.0% | |
| GCTGACTGTGTGCAGTGACG+GGG | - | chr4_3:45641521-45641540 | Msa0643140:intron | 60.0% | |
| ACGTGACACGTGTCCGACAC+CGG | - | chr4_3:45643153-45643172 | Msa0643140:intron | 60.0% | |
| CGTGACACGTGTCCGACACC+GGG | - | chr4_3:45643154-45643173 | Msa0643140:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45638942 | 45643576 | 45638942 | ID=Msa0643140;Name=Msa0643140 |
| chr4_3 | mRNA | 45638942 | 45643576 | 45638942 | ID=Msa0643140-mRNA-1;Parent=Msa0643140;Name=Msa0643140-mRNA-1;_AED=0.09;_eAED=0.09;_QI=160|0.77|0.7|1|0.55|0.4|10|1468|357 |
| chr4_3 | exon | 45638942 | 45639898 | 45638942 | ID=Msa0643140-mRNA-1:exon:10589;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45640122 | 45640201 | 45640122 | ID=Msa0643140-mRNA-1:exon:10588;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45640518 | 45640608 | 45640518 | ID=Msa0643140-mRNA-1:exon:10587;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45640749 | 45640968 | 45640749 | ID=Msa0643140-mRNA-1:exon:10586;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45640993 | 45641462 | 45640993 | ID=Msa0643140-mRNA-1:exon:10585;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45641549 | 45641714 | 45641549 | ID=Msa0643140-mRNA-1:exon:10584;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45641790 | 45642009 | 45641790 | ID=Msa0643140-mRNA-1:exon:10583;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45642017 | 45642051 | 45642017 | ID=Msa0643140-mRNA-1:exon:10582;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45642099 | 45642299 | 45642099 | ID=Msa0643140-mRNA-1:exon:10581;Parent=Msa0643140-mRNA-1 |
| chr4_3 | exon | 45643315 | 45643576 | 45643315 | ID=Msa0643140-mRNA-1:exon:10580;Parent=Msa0643140-mRNA-1 |
| chr4_3 | five_prime_UTR | 45643417 | 45643576 | 45643417 | ID=Msa0643140-mRNA-1:five_prime_utr;Parent=Msa0643140-mRNA-1 |
| chr4_3 | CDS | 45643315 | 45643416 | 45643315 | ID=Msa0643140-mRNA-1:cds;Parent=Msa0643140-mRNA-1 |
| chr4_3 | CDS | 45642099 | 45642299 | 45642099 | ID=Msa0643140-mRNA-1:cds;Parent=Msa0643140-mRNA-1 |
| chr4_3 | CDS | 45642017 | 45642051 | 45642017 | ID=Msa0643140-mRNA-1:cds;Parent=Msa0643140-mRNA-1 |
| chr4_3 | CDS | 45641790 | 45642009 | 45641790 | ID=Msa0643140-mRNA-1:cds;Parent=Msa0643140-mRNA-1 |
| chr4_3 | CDS | 45641549 | 45641714 | 45641549 | ID=Msa0643140-mRNA-1:cds;Parent=Msa0643140-mRNA-1 |
| chr4_3 | CDS | 45641113 | 45641462 | 45641113 | ID=Msa0643140-mRNA-1:cds;Parent=Msa0643140-mRNA-1 |
| chr4_3 | three_prime_UTR | 45640993 | 45641112 | 45640993 | ID=Msa0643140-mRNA-1:three_prime_utr;Parent=Msa0643140-mRNA-1 |
| chr4_3 | three_prime_UTR | 45640749 | 45640968 | 45640749 | ID=Msa0643140-mRNA-1:three_prime_utr;Parent=Msa0643140-mRNA-1 |
| chr4_3 | three_prime_UTR | 45640518 | 45640608 | 45640518 | ID=Msa0643140-mRNA-1:three_prime_utr;Parent=Msa0643140-mRNA-1 |
| chr4_3 | three_prime_UTR | 45640122 | 45640201 | 45640122 | ID=Msa0643140-mRNA-1:three_prime_utr;Parent=Msa0643140-mRNA-1 |
| chr4_3 | three_prime_UTR | 45638942 | 45639898 | 45638942 | ID=Msa0643140-mRNA-1:three_prime_utr;Parent=Msa0643140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
