Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643740 | XP_039689728.1 | 90.625 | 224 | 17 | 3 | 1 | 222 | 1 | 222 | 9.52e-130 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0643740 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0643710 | Msa0643740 | 0.865257 | 6.730951e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643740 | MtrunA17_Chr4g0030411 | 88.696 | 115 | 10 | 2 | 1 | 113 | 1 | 114 | 2.56e-63 | 192 |
| Msa0643740 | MtrunA17_Chr4g0030421 | 75.373 | 134 | 11 | 3 | 109 | 222 | 1 | 132 | 2.01e-54 | 170 |
| Msa0643740 | MtrunA17_Chr2g0327621 | 54.545 | 187 | 59 | 6 | 57 | 222 | 70 | 251 | 6.31e-53 | 171 |
| Msa0643740 | MtrunA17_Chr1g0147111 | 36.220 | 127 | 68 | 4 | 54 | 168 | 152 | 277 | 1.90e-11 | 62.0 |
| Msa0643740 | MtrunA17_Chr8g0387241 | 39.716 | 141 | 44 | 9 | 56 | 167 | 141 | 269 | 4.08e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643740 | AT5G41380.1 | 36.464 | 181 | 79 | 8 | 37 | 194 | 107 | 274 | 1.07e-17 | 80.5 |
| Msa0643740 | AT5G59990.1 | 39.130 | 138 | 47 | 5 | 52 | 168 | 87 | 208 | 1.12e-16 | 76.6 |
| Msa0643740 | AT1G63820.1 | 41.121 | 107 | 32 | 4 | 93 | 172 | 139 | 241 | 5.11e-13 | 67.0 |
| Msa0643740 | AT5G53420.2 | 34.959 | 123 | 58 | 5 | 58 | 167 | 70 | 183 | 8.48e-11 | 59.3 |
| Msa0643740 | AT5G53420.5 | 34.959 | 123 | 58 | 5 | 58 | 167 | 70 | 183 | 8.48e-11 | 59.3 |
| Msa0643740 | AT5G53420.4 | 34.959 | 123 | 58 | 5 | 58 | 167 | 70 | 183 | 8.48e-11 | 59.3 |
Find 58 sgRNAs with CRISPR-Local
Find 400 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAATTAAGTATAAATT+TGG | 0.158626 | 4_3:+46964337 | Msa0643740:three_prime_UTR |
| CCTCTCCATCATTATTAATA+TGG | 0.215056 | 4_3:-46964184 | None:intergenic |
| TCAGCAAACAAAGTAGAAAA+AGG | 0.225080 | 4_3:-46958435 | None:intergenic |
| AGACACTATATGAGGAATTA+TGG | 0.234337 | 4_3:-46964292 | None:intergenic |
| CCGTATGTAAAGAGAGTTAA+TGG | 0.278874 | 4_3:+46961657 | Msa0643740:intron |
| AAGATGAGGAAGAAGAGAAT+TGG | 0.325488 | 4_3:+46964213 | Msa0643740:CDS |
| TTAATATGGCTCCATTGATT+TGG | 0.330401 | 4_3:-46964170 | None:intergenic |
| GACTCGTCATGAGCAAGATT+TGG | 0.366759 | 4_3:-46964266 | None:intergenic |
| GACACTATATGAGGAATTAT+GGG | 0.370530 | 4_3:-46964291 | None:intergenic |
| AGATGAGGAAGAAGAGAATT+GGG | 0.375443 | 4_3:+46964214 | Msa0643740:CDS |
| GAATTGCTTGATCAAGAAAA+TGG | 0.385253 | 4_3:+46958456 | Msa0643740:CDS |
| TTCCTCTGGGCTGTAAGGAC+TGG | 0.386798 | 4_3:-46961760 | None:intergenic |
| GACAGTAGGCCACGTATTAG+AGG | 0.396649 | 4_3:+46964110 | Msa0643740:CDS |
| TGGTTGTGCTGCTGCATATC+AGG | 0.400086 | 4_3:-46958243 | None:intergenic |
| CTCAACTCTGGTGGTGGTGG+TGG | 0.402700 | 4_3:+46958294 | Msa0643740:CDS |
| CAGCGGGTGCACTAGCTACT+TGG | 0.406529 | 4_3:+46958338 | Msa0643740:CDS |
| CAGTACTGGTGATCTTGATC+AGG | 0.424707 | 4_3:+46958497 | Msa0643740:CDS |
| TTGGGAATCAGTATGTTTGT+AGG | 0.430394 | 4_3:+46964075 | Msa0643740:intron |
| ATCAGATAGTCCTTTGTTAA+CGG | 0.432485 | 4_3:+46961701 | Msa0643740:CDS |
| CAGCTCAACTCTGGTGGTGG+TGG | 0.445463 | 4_3:+46958291 | Msa0643740:CDS |
| ATATGGCTCCATTGATTTGG+TGG | 0.458606 | 4_3:-46964167 | None:intergenic |
| TGGAGCCATATTAATAATGA+TGG | 0.462252 | 4_3:+46964179 | Msa0643740:CDS |
| TAATGAATCCACCAAATCAA+TGG | 0.463510 | 4_3:+46964159 | Msa0643740:CDS |
| AGCGGGTGCACTAGCTACTT+GGG | 0.466418 | 4_3:+46958339 | Msa0643740:CDS |
| TTAATACAAGACACTATATG+AGG | 0.478126 | 4_3:-46964300 | None:intergenic |
| GGACAGTTTATTTGATACAT+TGG | 0.482895 | 4_3:+46964235 | Msa0643740:CDS |
| CACTAGCTACTTGGGGTCGC+CGG | 0.492708 | 4_3:+46958347 | Msa0643740:CDS |
| CCACAGCTCAACTCTGGTGG+TGG | 0.501156 | 4_3:+46958288 | Msa0643740:CDS |
| TAATGCTCCTCTGCATCAAT+CGG | 0.513230 | 4_3:-46958371 | None:intergenic |
| TGGAGAGGAATTAGAAGATG+AGG | 0.517815 | 4_3:+46964199 | Msa0643740:CDS |
| GTGCGGCGAGTTTACAGTAC+TGG | 0.524680 | 4_3:+46958483 | Msa0643740:CDS |
| TCGGTCCCACAGCTCAACTC+TGG | 0.546806 | 4_3:+46958282 | Msa0643740:CDS |
| CTCCTCTGCATCAATCGGTC+CGG | 0.559465 | 4_3:-46958366 | None:intergenic |
| CGCCGGACCGATTGATGCAG+AGG | 0.577048 | 4_3:+46958364 | Msa0643740:CDS |
| TTACAGCCCAGAGGAAAAGA+AGG | 0.592097 | 4_3:+46961767 | Msa0643740:CDS |
| ACAGTAGGCCACGTATTAGA+GGG | 0.598648 | 4_3:+46964111 | Msa0643740:CDS |
| ATTATAATAGCTGTAGCAGC+GGG | 0.602727 | 4_3:+46958322 | Msa0643740:CDS |
| GTCCCACAGCTCAACTCTGG+TGG | 0.604461 | 4_3:+46958285 | Msa0643740:CDS |
| GTATGTTTGTAGGAAGACAT+TGG | 0.609319 | 4_3:+46964085 | Msa0643740:intron |
| ATGCAGCAGCACAACCACCT+TGG | 0.612920 | 4_3:+46958249 | Msa0643740:CDS |
| CACCACCAGAGTTGAGCTGT+GGG | 0.613404 | 4_3:-46958287 | None:intergenic |
| GGAAGACATTGGCAGACAGT+AGG | 0.616987 | 4_3:+46964096 | Msa0643740:CDS |
| CCACCACCAGAGTTGAGCTG+TGG | 0.618777 | 4_3:-46958288 | None:intergenic |
| TCATGAGCAAGATTTGGAGT+AGG | 0.623530 | 4_3:-46964260 | None:intergenic |
| GCGGGTGCACTAGCTACTTG+GGG | 0.623679 | 4_3:+46958340 | Msa0643740:CDS |
| CCATATTAATAATGATGGAG+AGG | 0.627865 | 4_3:+46964184 | Msa0643740:CDS |
| AATTATAATAGCTGTAGCAG+CGG | 0.651255 | 4_3:+46958321 | Msa0643740:CDS |
| ATGTTACTCTCCGTTAACAA+AGG | 0.656013 | 4_3:-46961711 | None:intergenic |
| CTGCTGCATATCAGGCGTGG+TGG | 0.663548 | 4_3:-46958235 | None:intergenic |
| ACACTATATGAGGAATTATG+GGG | 0.665187 | 4_3:-46964290 | None:intergenic |
| ATCAAGAAAATGGTGCGGTG+CGG | 0.665222 | 4_3:+46958466 | Msa0643740:CDS |
| AGCCAGTCCTTACAGCCCAG+AGG | 0.687171 | 4_3:+46961758 | Msa0643740:CDS |
| GTGCTGCTGCATATCAGGCG+TGG | 0.690874 | 4_3:-46958238 | None:intergenic |
| CCACCTTGGTGAATACGAGT+CGG | 0.699146 | 4_3:+46958263 | Msa0643740:CDS |
| GCAAATCTCCCTCTAATACG+TGG | 0.703686 | 4_3:-46964119 | None:intergenic |
| GGACCGACTCGTATTCACCA+AGG | 0.731845 | 4_3:-46958266 | None:intergenic |
| CCGACTCGTATTCACCAAGG+TGG | 0.737009 | 4_3:-46958263 | None:intergenic |
| GCTTGATCAAGAAAATGGTG+CGG | 0.768844 | 4_3:+46958461 | Msa0643740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTAAATAAATAT+CGG | - | chr4_3:46961933-46961952 | None:intergenic | 0.0% |
| !!! | AAATTATTGTTCTTTTTTTT+TGG | - | chr4_3:46958669-46958688 | None:intergenic | 10.0% |
| !!! | ATTAAGAAAAAAATAGATTT+TGG | - | chr4_3:46959227-46959246 | None:intergenic | 10.0% |
| !!! | CATATTATTTATATGATTTT+TGG | - | chr4_3:46960791-46960810 | None:intergenic | 10.0% |
| !!! | AAAAATAATACTTTTTGTTT+AGG | - | chr4_3:46961308-46961327 | None:intergenic | 10.0% |
| !!! | AATCTTCTATATTTTTTTTT+TGG | + | chr4_3:46961334-46961353 | Msa0643740:intron | 10.0% |
| !!! | TTTAAGTTTTAAAACAATAT+TGG | - | chr4_3:46961963-46961982 | None:intergenic | 10.0% |
| !!! | TTTAAAACTTAAATAGTATA+TGG | + | chr4_3:46961970-46961989 | Msa0643740:intron | 10.0% |
| !! | TGTTTAATTAAGTATAAATT+TGG | + | chr4_3:46964337-46964356 | Msa0643740:three_prime_UTR | 10.0% |
| !! | GTCATTATTATATAAAAAAG+TGG | - | chr4_3:46958559-46958578 | None:intergenic | 15.0% |
| !! | CAAAGTAGTATAAAAATTAT+TGG | - | chr4_3:46958646-46958665 | None:intergenic | 15.0% |
| !! | TCATATTTATTTAAATAGGT+CGG | - | chr4_3:46958886-46958905 | None:intergenic | 15.0% |
| !! | TATAAACTAGAATTGAAATA+TGG | + | chr4_3:46959029-46959048 | Msa0643740:intron | 15.0% |
| !!! | GACTTCAATTTTTTTTTTTT+AGG | + | chr4_3:46960137-46960156 | Msa0643740:intron | 15.0% |
| !!! | TATGAGTTTATTTTTTTCAA+TGG | - | chr4_3:46960246-46960265 | None:intergenic | 15.0% |
| !!! | AAACTCATATTTTTTTTTAG+AGG | + | chr4_3:46960257-46960276 | Msa0643740:intron | 15.0% |
| !!! | AAAATCTATATCACTTTTTA+TGG | + | chr4_3:46960406-46960425 | Msa0643740:intron | 15.0% |
| !!! | CAATAATTTTAGTTTTTTTG+AGG | - | chr4_3:46961132-46961151 | None:intergenic | 15.0% |
| !! | ACTAAAATTATTGAATAAGT+AGG | + | chr4_3:46961139-46961158 | Msa0643740:intron | 15.0% |
| !!! | TATCCCTAATTATATATTTT+TGG | + | chr4_3:46961180-46961199 | Msa0643740:intron | 15.0% |
| !! | TAGCCAAAAATATATAATTA+GGG | - | chr4_3:46961186-46961205 | None:intergenic | 15.0% |
| !!! | GTTATTGTGATTTTTTTTAT+TGG | + | chr4_3:46961440-46961459 | Msa0643740:intron | 15.0% |
| !!! | TTATTGGTTAAATTTACTAT+TGG | + | chr4_3:46961456-46961475 | Msa0643740:intron | 15.0% |
| !! | AAAATGTATGTATTAAAATG+AGG | - | chr4_3:46961887-46961906 | None:intergenic | 15.0% |
| !! | TTTCTTTCATCTAAAAAAAA+TGG | - | chr4_3:46962234-46962253 | None:intergenic | 15.0% |
| !!! | AGAACTAATTAATTTGAATA+TGG | - | chr4_3:46962911-46962930 | None:intergenic | 15.0% |
| !! | TAAAAAAACATAAGAAGAAA+AGG | + | chr4_3:46963000-46963019 | Msa0643740:intron | 15.0% |
| !!! | ATATTTTTTATTTTGTTGTG+TGG | + | chr4_3:46963175-46963194 | Msa0643740:intron | 15.0% |
| !!! | TATTTTTTATTTTGTTGTGT+GGG | + | chr4_3:46963176-46963195 | Msa0643740:intron | 15.0% |
| !! | TTAAGAATATTATAACAACA+TGG | + | chr4_3:46963384-46963403 | Msa0643740:intron | 15.0% |
| !!! | GTTTATTTTTGAAAAAACTA+GGG | - | chr4_3:46963735-46963754 | None:intergenic | 15.0% |
| !!! | AGTTTATTTTTGAAAAAACT+AGG | - | chr4_3:46963736-46963755 | None:intergenic | 15.0% |
| !!! | TCAAATTGTAACTATAATTT+TGG | + | chr4_3:46963873-46963892 | Msa0643740:intron | 15.0% |
| !!! | TATAAAAAAGTGGATTTTAG+AGG | - | chr4_3:46958549-46958568 | None:intergenic | 20.0% |
| !! | GTAGTATAAAAATTATTGGA+CGG | - | chr4_3:46958642-46958661 | None:intergenic | 20.0% |
| !! | TTTAAGAAAAAAGTTTGGTT+TGG | - | chr4_3:46958785-46958804 | None:intergenic | 20.0% |
| !! | CTCTATTTAAGAAAAAAGTT+TGG | - | chr4_3:46958790-46958809 | None:intergenic | 20.0% |
| !!! | TGTTTGTTTTGGATTTTTTT+TGG | + | chr4_3:46959068-46959087 | Msa0643740:intron | 20.0% |
| !!! | TGAAATAGATTTTCATTTTG+AGG | - | chr4_3:46959194-46959213 | None:intergenic | 20.0% |
| !!! | TCTATTTTTTTCTTAATGCA+AGG | + | chr4_3:46959230-46959249 | Msa0643740:intron | 20.0% |
| !!! | GATGAAATAAACTTTTAAAC+AGG | + | chr4_3:46959525-46959544 | Msa0643740:intron | 20.0% |
| !!! | TTTTCATAAGCTTACTTTTT+AGG | - | chr4_3:46959591-46959610 | None:intergenic | 20.0% |
| !! | ATGAAATAAGATGTAAAATG+AGG | - | chr4_3:46960360-46960379 | None:intergenic | 20.0% |
| !! | GTAGCCAAAAATATATAATT+AGG | - | chr4_3:46961187-46961206 | None:intergenic | 20.0% |
| !! | TTCCACATAAAATTAAACTT+GGG | - | chr4_3:46961210-46961229 | None:intergenic | 20.0% |
| !! | ATTCCACATAAAATTAAACT+TGG | - | chr4_3:46961211-46961230 | None:intergenic | 20.0% |
| !!! | AAAGCTAGCAATATTTTATA+AGG | - | chr4_3:46961511-46961530 | None:intergenic | 20.0% |
| !! | TTACATTATGTTCTTATCAA+CGG | - | chr4_3:46961535-46961554 | None:intergenic | 20.0% |
| !! | GAACTACAATAAGAAAATTA+AGG | + | chr4_3:46961827-46961846 | Msa0643740:intron | 20.0% |
| !!! | AAAAAGATTTTTTAGTGTGT+GGG | - | chr4_3:46962446-46962465 | None:intergenic | 20.0% |
| !!! | AAAAAAGATTTTTTAGTGTG+TGG | - | chr4_3:46962447-46962466 | None:intergenic | 20.0% |
| !!! | AGTTCATTTTCCTATTTTTA+CGG | - | chr4_3:46962720-46962739 | None:intergenic | 20.0% |
| !!! | ATATTTTTGTGTTATAAGAG+AGG | + | chr4_3:46963123-46963142 | Msa0643740:intron | 20.0% |
| !!! | TATTTTTGTGTTATAAGAGA+GGG | + | chr4_3:46963124-46963143 | Msa0643740:intron | 20.0% |
| !! | AAAAAATATAAGTGTAACAG+TGG | - | chr4_3:46963164-46963183 | None:intergenic | 20.0% |
| !!! | CAAAAACAAAATTTGTTTCA+TGG | - | chr4_3:46963203-46963222 | None:intergenic | 20.0% |
| !!! | AATATGGTCATTCATTTTAA+AGG | - | chr4_3:46963270-46963289 | None:intergenic | 20.0% |
| !! | TTAAAATGAATGACCATATT+AGG | + | chr4_3:46963270-46963289 | Msa0643740:intron | 20.0% |
| !! | TAAAATGAATGACCATATTA+GGG | + | chr4_3:46963271-46963290 | Msa0643740:intron | 20.0% |
| !!! | CAATTTTTTCCTGTATTTTT+TGG | - | chr4_3:46963301-46963320 | None:intergenic | 20.0% |
| !! | ATATAAAACCCTCATTATTT+GGG | - | chr4_3:46963472-46963491 | None:intergenic | 20.0% |
| !! | AATATAAAACCCTCATTATT+TGG | - | chr4_3:46963473-46963492 | None:intergenic | 20.0% |
| !!! | TTTTCAAAAATAAACTGAAG+TGG | + | chr4_3:46963740-46963759 | Msa0643740:intron | 20.0% |
| !! | TGAAGAATGAAAATTAGAAT+TGG | + | chr4_3:46963789-46963808 | Msa0643740:intron | 20.0% |
| !!! | TATTCTTTTGATTTTTTGCA+TGG | + | chr4_3:46963822-46963841 | Msa0643740:intron | 20.0% |
| !!! | ATCTTAGTTTTGTTTTCTTT+TGG | + | chr4_3:46964056-46964075 | Msa0643740:intron | 20.0% |
| !!! | TCTTAGTTTTGTTTTCTTTT+GGG | + | chr4_3:46964057-46964076 | Msa0643740:intron | 20.0% |
| ! | TTCTTAAATAGAGAAGACTT+TGG | + | chr4_3:46958797-46958816 | Msa0643740:intron | 25.0% |
| ! | TGAAATATGGTACAACATAT+AGG | + | chr4_3:46959042-46959061 | Msa0643740:intron | 25.0% |
| ! | GAAATATGGTACAACATATA+GGG | + | chr4_3:46959043-46959062 | Msa0643740:intron | 25.0% |
| !!! | TTTTTAGAGAAGTTGACTAT+GGG | - | chr4_3:46959409-46959428 | None:intergenic | 25.0% |
| !!! | GAGTCATTTTTCATTTATGT+AGG | + | chr4_3:46959758-46959777 | Msa0643740:intron | 25.0% |
| ! | AAAAAAAGCGATGATGAAAT+GGG | - | chr4_3:46959872-46959891 | None:intergenic | 25.0% |
| ! | AAAAAAAAGCGATGATGAAA+TGG | - | chr4_3:46959873-46959892 | None:intergenic | 25.0% |
| ! | CTAATTCTTGTCTACAAAAT+TGG | - | chr4_3:46959912-46959931 | None:intergenic | 25.0% |
| !! | TTTTGTAGACAAGAATTAGA+TGG | + | chr4_3:46959913-46959932 | Msa0643740:intron | 25.0% |
| ! | TTCTTTCTTCTTAAACAACT+AGG | + | chr4_3:46959940-46959959 | Msa0643740:intron | 25.0% |
| !!! | CATATTTTTTTTTAGAGGAG+TGG | + | chr4_3:46960262-46960281 | Msa0643740:intron | 25.0% |
| ! | AGATACTTATAAGATCAGTT+TGG | - | chr4_3:46960332-46960351 | None:intergenic | 25.0% |
| ! | ACTCCATTAAAGAAAATGTT+TGG | - | chr4_3:46960614-46960633 | None:intergenic | 25.0% |
| !! | CATTTTCTTTAATGGAGTAA+TGG | + | chr4_3:46960616-46960635 | Msa0643740:intron | 25.0% |
| !!! | ATGTCTTTTATTTTCTTCCA+GGG | - | chr4_3:46960645-46960664 | None:intergenic | 25.0% |
| !!! | AATGTCTTTTATTTTCTTCC+AGG | - | chr4_3:46960646-46960665 | None:intergenic | 25.0% |
| ! | ATTGTCGCAAAAGATAATAA+AGG | - | chr4_3:46960990-46961009 | None:intergenic | 25.0% |
| ! | TCCACATAAAATTAAACTTG+GGG | - | chr4_3:46961209-46961228 | None:intergenic | 25.0% |
| !! | ATGTGGAATAAATTTTTGTC+TGG | + | chr4_3:46961222-46961241 | Msa0643740:intron | 25.0% |
| !!! | AATAAATTTTTGTCTGGCTT+AGG | + | chr4_3:46961228-46961247 | Msa0643740:intron | 25.0% |
| !!! | ACAATATGTTGTTGTTGTTT+TGG | + | chr4_3:46961358-46961377 | Msa0643740:intron | 25.0% |
| ! | AACTTAAATAGTATATGGTC+CGG | + | chr4_3:46961975-46961994 | Msa0643740:intron | 25.0% |
| ! | CTACTTTAAACAATTTAAGC+TGG | + | chr4_3:46962022-46962041 | Msa0643740:intron | 25.0% |
| !!! | CAACTCAAGTTTTTTATAAG+TGG | - | chr4_3:46962162-46962181 | None:intergenic | 25.0% |
| ! | CACTTATAAAAAACTTGAGT+TGG | + | chr4_3:46962160-46962179 | Msa0643740:intron | 25.0% |
| !!! | ATAAAAAACTTGAGTTGGAA+AGG | + | chr4_3:46962165-46962184 | Msa0643740:intron | 25.0% |
| ! | TCTAAAAAAAATGGCATACT+TGG | - | chr4_3:46962225-46962244 | None:intergenic | 25.0% |
| ! | CATGAAGAAAAATTGTTTCA+TGG | + | chr4_3:46962419-46962438 | Msa0643740:intron | 25.0% |
| !! | AAAATGATGGTTCTATACTT+GGG | - | chr4_3:46962523-46962542 | None:intergenic | 25.0% |
| !! | TAAAATGATGGTTCTATACT+TGG | - | chr4_3:46962524-46962543 | None:intergenic | 25.0% |
| ! | TCTTTGATCTAGAAGTTTAT+GGG | - | chr4_3:46962636-46962655 | None:intergenic | 25.0% |
| ! | TTCTTTGATCTAGAAGTTTA+TGG | - | chr4_3:46962637-46962656 | None:intergenic | 25.0% |
| !!! | GTAGTTTATTTGTTGCTTTT+TGG | - | chr4_3:46962773-46962792 | None:intergenic | 25.0% |
| !! | TTCTTTTTCCTGTTATATTG+TGG | - | chr4_3:46962798-46962817 | None:intergenic | 25.0% |
| ! | AGAAAAGGAAAAAACAATGA+AGG | + | chr4_3:46963015-46963034 | Msa0643740:intron | 25.0% |
| !!! | TGCTATTGAAAGTCATTTTA+AGG | + | chr4_3:46963230-46963249 | Msa0643740:intron | 25.0% |
| !!! | GCTATTGAAAGTCATTTTAA+GGG | + | chr4_3:46963231-46963250 | Msa0643740:intron | 25.0% |
| !!! | CTATTGAAAGTCATTTTAAG+GGG | + | chr4_3:46963232-46963251 | Msa0643740:intron | 25.0% |
| ! | AAAATGAATGACCATATTAG+GGG | + | chr4_3:46963272-46963291 | Msa0643740:intron | 25.0% |
| ! | TATAAAACCCTCATTATTTG+GGG | - | chr4_3:46963471-46963490 | None:intergenic | 25.0% |
| !! | ACAAAATTTTCTCCATTCAT+TGG | - | chr4_3:46963625-46963644 | None:intergenic | 25.0% |
| !! | CATCTAAGATTGAAAGTAAA+TGG | + | chr4_3:46963687-46963706 | Msa0643740:intron | 25.0% |
| ! | AAATGGAAACAGTAAAAAGT+TGG | + | chr4_3:46963704-46963723 | Msa0643740:intron | 25.0% |
| !! | ACAATTTGATATTTTCTGTG+TGG | - | chr4_3:46963862-46963881 | None:intergenic | 25.0% |
| !!! | GATTTGTTACTGTACATTAT+TGG | - | chr4_3:46964007-46964026 | None:intergenic | 25.0% |
| ! | TTAATACAAGACACTATATG+AGG | - | chr4_3:46964303-46964322 | None:intergenic | 25.0% |
| AATTATAATAGCTGTAGCAG+CGG | + | chr4_3:46958321-46958340 | Msa0643740:CDS | 30.0% | |
| CAGCAAACAAAGTAGAAAAA+GGG | - | chr4_3:46958437-46958456 | None:intergenic | 30.0% | |
| TCAGCAAACAAAGTAGAAAA+AGG | - | chr4_3:46958438-46958457 | None:intergenic | 30.0% | |
| GAATTGCTTGATCAAGAAAA+TGG | + | chr4_3:46958456-46958475 | Msa0643740:CDS | 30.0% | |
| GAGGAAGATGATATTGTAAA+CGG | - | chr4_3:46958530-46958549 | None:intergenic | 30.0% | |
| ATGTTGAATCTAATGCAAGT+AGG | + | chr4_3:46958700-46958719 | Msa0643740:intron | 30.0% | |
| TGTTGAATCTAATGCAAGTA+GGG | + | chr4_3:46958701-46958720 | Msa0643740:intron | 30.0% | |
| ! | GATCATTCAAAAAGCCTTTT+AGG | + | chr4_3:46958860-46958879 | Msa0643740:intron | 30.0% |
| !! | GTTTTTAGAGAAGTTGACTA+TGG | - | chr4_3:46959410-46959429 | None:intergenic | 30.0% |
| ! | AAACTTTTAAACAGGTTAGC+AGG | + | chr4_3:46959533-46959552 | Msa0643740:intron | 30.0% |
| TAATATGGAGGTTAAAATCG+TGG | - | chr4_3:46959799-46959818 | None:intergenic | 30.0% | |
| ACCTCCATATTAACAAAATC+CGG | + | chr4_3:46959807-46959826 | Msa0643740:intron | 30.0% | |
| !!! | ACACAATGATTTTAACTCTC+CGG | - | chr4_3:46959829-46959848 | None:intergenic | 30.0% |
| AAAAAAGCGATGATGAAATG+GGG | - | chr4_3:46959871-46959890 | None:intergenic | 30.0% | |
| TTCTTCTTAAACAACTAGGA+AGG | + | chr4_3:46959944-46959963 | Msa0643740:intron | 30.0% | |
| !!! | ATTTTTTTTTAGAGGAGTGG+AGG | + | chr4_3:46960265-46960284 | Msa0643740:intron | 30.0% |
| AGGAGTTAACAAAAGATGAA+AGG | + | chr4_3:46960285-46960304 | Msa0643740:intron | 30.0% | |
| GGAGTTAACAAAAGATGAAA+GGG | + | chr4_3:46960286-46960305 | Msa0643740:intron | 30.0% | |
| CTTATAAGATCAGTTTGGAA+CGG | - | chr4_3:46960327-46960346 | None:intergenic | 30.0% | |
| TGACAATGTGTTTATAAGTG+GGG | - | chr4_3:46960551-46960570 | None:intergenic | 30.0% | |
| GTGACAATGTGTTTATAAGT+GGG | - | chr4_3:46960552-46960571 | None:intergenic | 30.0% | |
| TGTGACAATGTGTTTATAAG+TGG | - | chr4_3:46960553-46960572 | None:intergenic | 30.0% | |
| CCATTAAAGAAAATGTTTGG+TGG | - | chr4_3:46960611-46960630 | None:intergenic | 30.0% | |
| ! | CCACCAAACATTTTCTTTAA+TGG | + | chr4_3:46960608-46960627 | Msa0643740:intron | 30.0% |
| CACTCAATGATATAAGATGT+AGG | - | chr4_3:46960728-46960747 | None:intergenic | 30.0% | |
| ACATCTTATATCATTGAGTG+TGG | + | chr4_3:46960728-46960747 | Msa0643740:intron | 30.0% | |
| AAAGAAAGAGAATAAGAACC+AGG | + | chr4_3:46961069-46961088 | Msa0643740:intron | 30.0% | |
| AAGAAAGAGAATAAGAACCA+GGG | + | chr4_3:46961070-46961089 | Msa0643740:intron | 30.0% | |
| !! | ACCCCAAGTTTAATTTTATG+TGG | + | chr4_3:46961205-46961224 | Msa0643740:intron | 30.0% |
| !! | GTGTTAATCCTTTAGTTTGT+GGG | - | chr4_3:46961286-46961305 | None:intergenic | 30.0% |
| ! | GCTAGCAATATTTTATAAGG+TGG | - | chr4_3:46961508-46961527 | None:intergenic | 30.0% |
| CCATTAACTCTCTTTACATA+CGG | - | chr4_3:46961660-46961679 | None:intergenic | 30.0% | |
| ATCAGATAGTCCTTTGTTAA+CGG | + | chr4_3:46961701-46961720 | Msa0643740:CDS | 30.0% | |
| AACCAAAATTGTCTACGATT+CGG | - | chr4_3:46962078-46962097 | None:intergenic | 30.0% | |
| GATAAGTTAGTTGAACTGTA+TGG | + | chr4_3:46962102-46962121 | Msa0643740:intron | 30.0% | |
| !!! | GGACTTGGTTTTTAAAACAT+TGG | + | chr4_3:46962127-46962146 | Msa0643740:intron | 30.0% |
| AAACTCGCAAACAAAACATT+AGG | - | chr4_3:46962280-46962299 | None:intergenic | 30.0% | |
| !!! | TAATGTTTTGTTTGCGAGTT+TGG | + | chr4_3:46962279-46962298 | Msa0643740:intron | 30.0% |
| TAAAATGAAGGACCATACTA+GGG | - | chr4_3:46962353-46962372 | None:intergenic | 30.0% | |
| TTAAAATGAAGGACCATACT+AGG | - | chr4_3:46962354-46962373 | None:intergenic | 30.0% | |
| ! | AGTATGGTCCTTCATTTTAA+AGG | + | chr4_3:46962354-46962373 | Msa0643740:intron | 30.0% |
| TTCATGAAACCTGTAATTGA+AGG | - | chr4_3:46962405-46962424 | None:intergenic | 30.0% | |
| !!! | CTTTTTTTAATGTGCAGCAT+TGG | + | chr4_3:46962460-46962479 | Msa0643740:intron | 30.0% |
| !!! | GATTTTAGGATTCTGTAGAA+GGG | - | chr4_3:46962500-46962519 | None:intergenic | 30.0% |
| ! | AAATGATGGTTCTATACTTG+GGG | - | chr4_3:46962522-46962541 | None:intergenic | 30.0% |
| ! | AAGTTTATGGGTTAAATGGA+GGG | - | chr4_3:46962624-46962643 | None:intergenic | 30.0% |
| ! | CTAGAAGTTTATGGGTTAAA+TGG | - | chr4_3:46962628-46962647 | None:intergenic | 30.0% |
| TCCAACAATGTCTTTACTTA+GGG | - | chr4_3:46962669-46962688 | None:intergenic | 30.0% | |
| CAATATGTTGCCGTAAAAAT+AGG | + | chr4_3:46962707-46962726 | Msa0643740:intron | 30.0% | |
| !!! | TTATTTGTTGCTTTTTGGTG+TGG | - | chr4_3:46962768-46962787 | None:intergenic | 30.0% |
| ! | TTTTTCCTGTTATATTGTGG+TGG | - | chr4_3:46962795-46962814 | None:intergenic | 30.0% |
| CTTCATGTTCCTAAATTTCT+TGG | + | chr4_3:46962851-46962870 | Msa0643740:intron | 30.0% | |
| GGGGAACTAAAAAATTGTAT+TGG | - | chr4_3:46963452-46963471 | None:intergenic | 30.0% | |
| !!! | TTTTAGTTCCCCAAATAATG+AGG | + | chr4_3:46963460-46963479 | Msa0643740:intron | 30.0% |
| ! | TTTAGTTCCCCAAATAATGA+GGG | + | chr4_3:46963461-46963480 | Msa0643740:intron | 30.0% |
| ATTGGAAGAGATAACTTTGA+GGG | - | chr4_3:46963512-46963531 | None:intergenic | 30.0% | |
| GAGTTTGGAGATAAAAAGAA+GGG | - | chr4_3:46963579-46963598 | None:intergenic | 30.0% | |
| ! | ATGGAGAAAATTTTGTGAAG+AGG | + | chr4_3:46963629-46963648 | Msa0643740:intron | 30.0% |
| TAATGAATCCACCAAATCAA+TGG | + | chr4_3:46964159-46964178 | Msa0643740:CDS | 30.0% | |
| ! | TTAATATGGCTCCATTGATT+TGG | - | chr4_3:46964173-46964192 | None:intergenic | 30.0% |
| TGGAGCCATATTAATAATGA+TGG | + | chr4_3:46964179-46964198 | Msa0643740:CDS | 30.0% | |
| CCTCTCCATCATTATTAATA+TGG | - | chr4_3:46964187-46964206 | None:intergenic | 30.0% | |
| ! | CCATATTAATAATGATGGAG+AGG | + | chr4_3:46964184-46964203 | Msa0643740:CDS | 30.0% |
| GGACAGTTTATTTGATACAT+TGG | + | chr4_3:46964235-46964254 | Msa0643740:CDS | 30.0% | |
| ACACTATATGAGGAATTATG+GGG | - | chr4_3:46964293-46964312 | None:intergenic | 30.0% | |
| GACACTATATGAGGAATTAT+GGG | - | chr4_3:46964294-46964313 | None:intergenic | 30.0% | |
| AGACACTATATGAGGAATTA+TGG | - | chr4_3:46964295-46964314 | None:intergenic | 30.0% | |
| ATTATAATAGCTGTAGCAGC+GGG | + | chr4_3:46958322-46958341 | Msa0643740:CDS | 35.0% | |
| CAAACAAAGTAGAAAAAGGG+CGG | - | chr4_3:46958434-46958453 | None:intergenic | 35.0% | |
| TAAAAATTATTGGACGGTCC+CGG | - | chr4_3:46958636-46958655 | None:intergenic | 35.0% | |
| AATCTAATGCAAGTAGGGAT+GGG | + | chr4_3:46958706-46958725 | Msa0643740:intron | 35.0% | |
| ! | TTTTTGAATGATCTGTGGCT+TGG | - | chr4_3:46958853-46958872 | None:intergenic | 35.0% |
| ! | AAGGCTTTTTGAATGATCTG+TGG | - | chr4_3:46958858-46958877 | None:intergenic | 35.0% |
| TTTAAATAGGTCGGCCTAAA+AGG | - | chr4_3:46958877-46958896 | None:intergenic | 35.0% | |
| ! | CATATAGGGCATGTTTGTTT+TGG | + | chr4_3:46959057-46959076 | Msa0643740:intron | 35.0% |
| !!! | TTACTTTTTAGGCTTGAGTC+TGG | - | chr4_3:46959580-46959599 | None:intergenic | 35.0% |
| AACGCGTTTAAATTCCAAGT+TGG | + | chr4_3:46959734-46959753 | Msa0643740:intron | 35.0% | |
| TGAAAAATGACTCTCCAACT+TGG | - | chr4_3:46959751-46959770 | None:intergenic | 35.0% | |
| ! | TCCGGATTTTGTTAATATGG+AGG | - | chr4_3:46959811-46959830 | None:intergenic | 35.0% |
| ! | CTCTCCGGATTTTGTTAATA+TGG | - | chr4_3:46959814-46959833 | None:intergenic | 35.0% |
| TGCAATATTTCACAAGTGTG+AGG | + | chr4_3:46959973-46959992 | Msa0643740:intron | 35.0% | |
| AATTCAACGTCTTTAACCGT+CGG | - | chr4_3:46960046-46960065 | None:intergenic | 35.0% | |
| TAGACTATGCACAACAATTG+AGG | - | chr4_3:46960172-46960191 | None:intergenic | 35.0% | |
| TTGTGCATAGTCTACTAGTA+GGG | + | chr4_3:46960178-46960197 | Msa0643740:intron | 35.0% | |
| GTCTCTTAGAAATCATGGTT+GGG | + | chr4_3:46960482-46960501 | Msa0643740:intron | 35.0% | |
| GACAATGTGTTTATAAGTGG+GGG | - | chr4_3:46960550-46960569 | None:intergenic | 35.0% | |
| CATTGTTAAGAGTCCTACAT+CGG | - | chr4_3:46960587-46960606 | None:intergenic | 35.0% | |
| ATATCATTGAGTGTGGACAT+CGG | + | chr4_3:46960735-46960754 | Msa0643740:intron | 35.0% | |
| !!! | CAGTTTTTTTGACAGAGATC+TGG | - | chr4_3:46960817-46960836 | None:intergenic | 35.0% |
| ATGTGTGTGATGTTTCATGT+CGG | + | chr4_3:46960916-46960935 | Msa0643740:intron | 35.0% | |
| AGAAAGAGAATAAGAACCAG+GGG | + | chr4_3:46961071-46961090 | Msa0643740:intron | 35.0% | |
| ! | TTTTGTCTCCCACAAACTAA+AGG | + | chr4_3:46961275-46961294 | Msa0643740:intron | 35.0% |
| !! | GGTGTTAATCCTTTAGTTTG+TGG | - | chr4_3:46961287-46961306 | None:intergenic | 35.0% |
| CCGTATGTAAAGAGAGTTAA+TGG | + | chr4_3:46961657-46961676 | Msa0643740:intron | 35.0% | |
| ATGTTACTCTCCGTTAACAA+AGG | - | chr4_3:46961714-46961733 | None:intergenic | 35.0% | |
| ATAGAAGCAAGAGAAATCAG+AGG | + | chr4_3:46961805-46961824 | Msa0643740:intron | 35.0% | |
| GTAGTTGAACCATAACTTAG+AGG | - | chr4_3:46962006-46962025 | None:intergenic | 35.0% | |
| !!! | TCGTAGACAATTTTGGTTCA+TGG | + | chr4_3:46962080-46962099 | Msa0643740:intron | 35.0% |
| AGTTAGTTGAACTGTATGGT+TGG | + | chr4_3:46962106-46962125 | Msa0643740:intron | 35.0% | |
| AAAATGAAGGACCATACTAG+GGG | - | chr4_3:46962352-46962371 | None:intergenic | 35.0% | |
| ! | TAATTGAAGGTCACTTTGAG+AGG | - | chr4_3:46962392-46962411 | None:intergenic | 35.0% |
| TCAAAGTGACCTTCAATTAC+AGG | + | chr4_3:46962393-46962412 | Msa0643740:intron | 35.0% | |
| !!! | GGATTTTAGGATTCTGTAGA+AGG | - | chr4_3:46962501-46962520 | None:intergenic | 35.0% |
| ! | GTTCTATACTTGGGGATTTT+AGG | - | chr4_3:46962514-46962533 | None:intergenic | 35.0% |
| AGAAGAAGAAGACAGTAGTA+GGG | - | chr4_3:46962573-46962592 | None:intergenic | 35.0% | |
| TAGAAGAAGAAGACAGTAGT+AGG | - | chr4_3:46962574-46962593 | None:intergenic | 35.0% | |
| ! | AGTTTATGGGTTAAATGGAG+GGG | - | chr4_3:46962623-46962642 | None:intergenic | 35.0% |
| ! | GAAGTTTATGGGTTAAATGG+AGG | - | chr4_3:46962625-46962644 | None:intergenic | 35.0% |
| TCCCTAAGTAAAGACATTGT+TGG | + | chr4_3:46962665-46962684 | Msa0643740:intron | 35.0% | |
| CTCCAACAATGTCTTTACTT+AGG | - | chr4_3:46962670-46962689 | None:intergenic | 35.0% | |
| AACTACCACCACAATATAAC+AGG | + | chr4_3:46962787-46962806 | Msa0643740:intron | 35.0% | |
| CTAAATTTCTTGGATGCAGA+CGG | + | chr4_3:46962861-46962880 | Msa0643740:intron | 35.0% | |
| TAAATTTCTTGGATGCAGAC+GGG | + | chr4_3:46962862-46962881 | Msa0643740:intron | 35.0% | |
| !! | TCATTTTAAAGGTCCACTCA+TGG | - | chr4_3:46963259-46963278 | None:intergenic | 35.0% |
| !!! | TTTTTTGGAAGCCCCTAATA+TGG | - | chr4_3:46963286-46963305 | None:intergenic | 35.0% |
| CATTGGAAGAGATAACTTTG+AGG | - | chr4_3:46963513-46963532 | None:intergenic | 35.0% | |
| GTGGAAGAAATAGAAGACAT+TGG | - | chr4_3:46963530-46963549 | None:intergenic | 35.0% | |
| GGAAAAAATGAAGGAGTAAG+TGG | - | chr4_3:46963549-46963568 | None:intergenic | 35.0% | |
| TTGGAGATAAAAAGAAGGGA+GGG | - | chr4_3:46963575-46963594 | None:intergenic | 35.0% | |
| TTTGGAGATAAAAAGAAGGG+AGG | - | chr4_3:46963576-46963595 | None:intergenic | 35.0% | |
| CGAGTTTGGAGATAAAAAGA+AGG | - | chr4_3:46963580-46963599 | None:intergenic | 35.0% | |
| !!! | TTAGGTTTTGTTTGCGAGTT+TGG | - | chr4_3:46963594-46963613 | None:intergenic | 35.0% |
| AAACTCGCAAACAAAACCTA+AGG | + | chr4_3:46963593-46963612 | Msa0643740:intron | 35.0% | |
| AACTCGCAAACAAAACCTAA+GGG | + | chr4_3:46963594-46963613 | Msa0643740:intron | 35.0% | |
| !! | AATTTTGGTGTGACACTTTG+TGG | + | chr4_3:46963888-46963907 | Msa0643740:intron | 35.0% |
| TTGGGAATCAGTATGTTTGT+AGG | + | chr4_3:46964075-46964094 | Msa0643740:intron | 35.0% | |
| GTATGTTTGTAGGAAGACAT+TGG | + | chr4_3:46964085-46964104 | Msa0643740:intron | 35.0% | |
| AAGATGAGGAAGAAGAGAAT+TGG | + | chr4_3:46964213-46964232 | Msa0643740:CDS | 35.0% | |
| AGATGAGGAAGAAGAGAATT+GGG | + | chr4_3:46964214-46964233 | Msa0643740:CDS | 35.0% | |
| TAATGCTCCTCTGCATCAAT+CGG | - | chr4_3:46958374-46958393 | None:intergenic | 40.0% | |
| ! | CATCATTCTTTTGCAGAGAG+TGG | - | chr4_3:46958401-46958420 | None:intergenic | 40.0% |
| GCTTGATCAAGAAAATGGTG+CGG | + | chr4_3:46958461-46958480 | Msa0643740:CDS | 40.0% | |
| AAAAATTATTGGACGGTCCC+GGG | - | chr4_3:46958635-46958654 | None:intergenic | 40.0% | |
| GAATCTAATGCAAGTAGGGA+TGG | + | chr4_3:46958705-46958724 | Msa0643740:intron | 40.0% | |
| !! | GAAAAAAGTTTGGTTTGGCC+TGG | - | chr4_3:46958780-46958799 | None:intergenic | 40.0% |
| GCTTAGGCCTTCAAACAAAT+TGG | + | chr4_3:46959623-46959642 | Msa0643740:intron | 40.0% | |
| AGTCCAAACCCTTGGATTTA+GGG | - | chr4_3:46959700-46959719 | None:intergenic | 40.0% | |
| GTTTGGACTCCTCAGATATT+AGG | + | chr4_3:46959711-46959730 | Msa0643740:intron | 40.0% | |
| AAACGCGTTCCTAATATCTG+AGG | - | chr4_3:46959723-46959742 | None:intergenic | 40.0% | |
| ! | GTCTACAATTTTATCGCCGA+CGG | + | chr4_3:46960027-46960046 | Msa0643740:intron | 40.0% |
| GTTGTGCATAGTCTACTAGT+AGG | + | chr4_3:46960177-46960196 | Msa0643740:intron | 40.0% | |
| GAGACGTCTCTTAGAAATCA+TGG | + | chr4_3:46960477-46960496 | Msa0643740:intron | 40.0% | |
| CGTCTCTTAGAAATCATGGT+TGG | + | chr4_3:46960481-46960500 | Msa0643740:intron | 40.0% | |
| TGTGTGTGATGTTTCATGTC+GGG | + | chr4_3:46960917-46960936 | Msa0643740:intron | 40.0% | |
| ! | AGCCGAATCGTAGACAATTT+TGG | + | chr4_3:46962073-46962092 | Msa0643740:intron | 40.0% |
| TTGAACTGTATGGTTGGACT+TGG | + | chr4_3:46962112-46962131 | Msa0643740:intron | 40.0% | |
| !!! | TGTTTTGTTTGCGAGTTTGG+AGG | + | chr4_3:46962282-46962301 | Msa0643740:intron | 40.0% |
| !!! | GTTTTGTTTGCGAGTTTGGA+GGG | + | chr4_3:46962283-46962302 | Msa0643740:intron | 40.0% |
| !! | TTTTGTTTGCGAGTTTGGAG+GGG | + | chr4_3:46962284-46962303 | Msa0643740:intron | 40.0% |
| !! | TGGGTGGACCTTTAAAATGA+AGG | - | chr4_3:46962365-46962384 | None:intergenic | 40.0% |
| CGTCTGCATCCAAGAAATTT+AGG | - | chr4_3:46962863-46962882 | None:intergenic | 40.0% | |
| ! | TTGCTGTGTTGTTCTCTTTG+TGG | - | chr4_3:46963043-46963062 | None:intergenic | 40.0% |
| TAGGGGCTTCCAAAAAATAC+AGG | + | chr4_3:46963289-46963308 | Msa0643740:intron | 40.0% | |
| GGAGGGTTTGGAAAAAATGA+AGG | - | chr4_3:46963558-46963577 | None:intergenic | 40.0% | |
| GATAAAAAGAAGGGAGGGTT+TGG | - | chr4_3:46963570-46963589 | None:intergenic | 40.0% | |
| CATTCATTGGAGTTTCCCTT+AGG | - | chr4_3:46963612-46963631 | None:intergenic | 40.0% | |
| CTAAGGGAAACTCCAATGAA+TGG | + | chr4_3:46963610-46963629 | Msa0643740:intron | 40.0% | |
| !! | ATATGGCTCCATTGATTTGG+TGG | - | chr4_3:46964170-46964189 | None:intergenic | 40.0% |
| TGGAGAGGAATTAGAAGATG+AGG | + | chr4_3:46964199-46964218 | Msa0643740:CDS | 40.0% | |
| ! | TCATGAGCAAGATTTGGAGT+AGG | - | chr4_3:46964263-46964282 | None:intergenic | 40.0% |
| ACAAAGTAGAAAAAGGGCGG+TGG | - | chr4_3:46958431-46958450 | None:intergenic | 45.0% | |
| ATCAAGAAAATGGTGCGGTG+CGG | + | chr4_3:46958466-46958485 | Msa0643740:CDS | 45.0% | |
| !! | CAGTACTGGTGATCTTGATC+AGG | + | chr4_3:46958497-46958516 | Msa0643740:CDS | 45.0% |
| AGCTAGACATCCGTTTGTAG+AGG | + | chr4_3:46958597-46958616 | Msa0643740:intron | 45.0% | |
| CGAATCTACGCCTCTACAAA+CGG | - | chr4_3:46958610-46958629 | None:intergenic | 45.0% | |
| ATGCAAGTAGGGATGGGAAT+AGG | + | chr4_3:46958712-46958731 | Msa0643740:intron | 45.0% | |
| TTTGTTTGAAGGCCTAAGCC+TGG | - | chr4_3:46959622-46959641 | None:intergenic | 45.0% | |
| AGGCCTTCAAACAAATTGGC+AGG | + | chr4_3:46959627-46959646 | Msa0643740:intron | 45.0% | |
| ! | TGGCCTGCCAATTTGTTTGA+AGG | - | chr4_3:46959633-46959652 | None:intergenic | 45.0% |
| TTGGATTTAGGGGTGGGAAT+AGG | - | chr4_3:46959689-46959708 | None:intergenic | 45.0% | |
| TATTCCCACCCCTAAATCCA+AGG | + | chr4_3:46959688-46959707 | Msa0643740:intron | 45.0% | |
| ATTCCCACCCCTAAATCCAA+GGG | + | chr4_3:46959689-46959708 | Msa0643740:intron | 45.0% | |
| AAACCCTTGGATTTAGGGGT+GGG | - | chr4_3:46959695-46959714 | None:intergenic | 45.0% | |
| GTCCAAACCCTTGGATTTAG+GGG | - | chr4_3:46959699-46959718 | None:intergenic | 45.0% | |
| GAGTCCAAACCCTTGGATTT+AGG | - | chr4_3:46959701-46959720 | None:intergenic | 45.0% | |
| CTAACACAACCCCACAAAAC+TGG | + | chr4_3:46960506-46960525 | Msa0643740:intron | 45.0% | |
| !! | ACCTCACAAGCCAGTTTTGT+GGG | - | chr4_3:46960519-46960538 | None:intergenic | 45.0% |
| CACCATCTCATATCCGATGT+AGG | + | chr4_3:46960571-46960590 | Msa0643740:intron | 45.0% | |
| GTCCTACATCGGATATGAGA+TGG | - | chr4_3:46960576-46960595 | None:intergenic | 45.0% | |
| !! | TAATGGAGTAATGGACACCC+TGG | + | chr4_3:46960625-46960644 | Msa0643740:intron | 45.0% |
| GTGTGTGATGTTTCATGTCG+GGG | + | chr4_3:46960918-46960937 | Msa0643740:intron | 45.0% | |
| TGTGTGATGTTTCATGTCGG+GGG | + | chr4_3:46960919-46960938 | Msa0643740:intron | 45.0% | |
| AAGAGAATAAGAACCAGGGG+CGG | + | chr4_3:46961074-46961093 | Msa0643740:intron | 45.0% | |
| ! | TTCTTTTCCTCTGGGCTGTA+AGG | - | chr4_3:46961768-46961787 | None:intergenic | 45.0% |
| TTACAGCCCAGAGGAAAAGA+AGG | + | chr4_3:46961767-46961786 | Msa0643740:CDS | 45.0% | |
| ! | TCCTCACCTTCTTTTCCTCT+GGG | - | chr4_3:46961776-46961795 | None:intergenic | 45.0% |
| ! | ATCCTCACCTTCTTTTCCTC+TGG | - | chr4_3:46961777-46961796 | None:intergenic | 45.0% |
| AAGGAAGGAAGGAAGGACTT+TGG | + | chr4_3:46962308-46962327 | Msa0643740:intron | 45.0% | |
| AGGAAGGAAGGAAGGACTTT+GGG | + | chr4_3:46962309-46962328 | Msa0643740:intron | 45.0% | |
| ! | GACTTTGGGGGTGAGAAATA+CGG | + | chr4_3:46962323-46962342 | Msa0643740:intron | 45.0% |
| AAATACGGAAGCCCCTAGTA+TGG | + | chr4_3:46962338-46962357 | Msa0643740:intron | 45.0% | |
| ! | GGTCACTTTGAGAGGAGTAT+GGG | - | chr4_3:46962384-46962403 | None:intergenic | 45.0% |
| ! | AGGTCACTTTGAGAGGAGTA+TGG | - | chr4_3:46962385-46962404 | None:intergenic | 45.0% |
| CAGAGGGAGGAGTAAAATGA+TGG | - | chr4_3:46962536-46962555 | None:intergenic | 45.0% | |
| GGATGAACAGAGAAGACAGA+GGG | - | chr4_3:46962552-46962571 | None:intergenic | 45.0% | |
| TCCCAAACTCTATAAACGCG+TGG | + | chr4_3:46962885-46962904 | Msa0643740:intron | 45.0% | |
| GCCACGCGTTTATAGAGTTT+GGG | - | chr4_3:46962889-46962908 | None:intergenic | 45.0% | |
| CGATGAAGAGAGAGAAAGAG+AGG | + | chr4_3:46963078-46963097 | Msa0643740:intron | 45.0% | |
| TGAAGAGAGAGAAAGAGAGG+AGG | + | chr4_3:46963081-46963100 | Msa0643740:intron | 45.0% | |
| !! | CATTTTAAGGGGACCATGAG+TGG | + | chr4_3:46963243-46963262 | Msa0643740:intron | 45.0% |
| TTTGCATGGTAGAGTCTTGC+AGG | + | chr4_3:46963836-46963855 | Msa0643740:intron | 45.0% | |
| ACAGTAGGCCACGTATTAGA+GGG | + | chr4_3:46964111-46964130 | Msa0643740:CDS | 45.0% | |
| GCAAATCTCCCTCTAATACG+TGG | - | chr4_3:46964122-46964141 | None:intergenic | 45.0% | |
| GACTCGTCATGAGCAAGATT+TGG | - | chr4_3:46964269-46964288 | None:intergenic | 45.0% | |
| !! | TTATTCATATTTATTTAAAT+AGG | - | chr4_3:46958890-46958909 | None:intergenic | 5.0% |
| !!! | ATATTATTTATATGATTTTT+GGG | - | chr4_3:46960790-46960809 | None:intergenic | 5.0% |
| !! | TAAATAAAAAAAATTATATG+TGG | + | chr4_3:46961482-46961501 | Msa0643740:intron | 5.0% |
| ! | TGGTTGTGCTGCTGCATATC+AGG | - | chr4_3:46958246-46958265 | None:intergenic | 50.0% |
| CCACCTTGGTGAATACGAGT+CGG | + | chr4_3:46958263-46958282 | Msa0643740:CDS | 50.0% | |
| CGGATGTCTAGCTGATGAGA+TGG | - | chr4_3:46958590-46958609 | None:intergenic | 50.0% | |
| ! | TAGAGGCGTAGATTCGAACC+CGG | + | chr4_3:46958614-46958633 | Msa0643740:intron | 50.0% |
| ! | GGCCTTCTGAAAGCCTGATA+CGG | - | chr4_3:46959559-46959578 | None:intergenic | 50.0% |
| AGGTCTTGCAAAGCCTAGCT+CGG | + | chr4_3:46959658-46959677 | Msa0643740:intron | 50.0% | |
| TTTAGGGGTGGGAATAGGCT+AGG | - | chr4_3:46959684-46959703 | None:intergenic | 50.0% | |
| CAAACCCTTGGATTTAGGGG+TGG | - | chr4_3:46959696-46959715 | None:intergenic | 50.0% | |
| CACCCCTAAATCCAAGGGTT+TGG | + | chr4_3:46959694-46959713 | Msa0643740:intron | 50.0% | |
| ATCTGAGGAGTCCAAACCCT+TGG | - | chr4_3:46959708-46959727 | None:intergenic | 50.0% | |
| !! | CCTCACAAGCCAGTTTTGTG+GGG | - | chr4_3:46960518-46960537 | None:intergenic | 50.0% |
| ! | CACCTCACAAGCCAGTTTTG+TGG | - | chr4_3:46960520-46960539 | None:intergenic | 50.0% |
| !! | CAAAACTGGCTTGTGAGGTG+AGG | + | chr4_3:46960520-46960539 | Msa0643740:intron | 50.0% |
| GCGGATGCTTGTGCATGAAA+GGG | + | chr4_3:46961093-46961112 | Msa0643740:intron | 50.0% | |
| CGGATGCTTGTGCATGAAAG+GGG | + | chr4_3:46961094-46961113 | Msa0643740:intron | 50.0% | |
| GTGCATGAAAGGGGTAGCTA+TGG | + | chr4_3:46961103-46961122 | Msa0643740:intron | 50.0% | |
| CCATAACTTAGAGGTCTCGC+CGG | - | chr4_3:46961997-46962016 | None:intergenic | 50.0% | |
| TTTGCGAGTTTGGAGGGGAA+AGG | + | chr4_3:46962289-46962308 | Msa0643740:intron | 50.0% | |
| TTTGGAGGGGAAAGGAAGGA+AGG | + | chr4_3:46962297-46962316 | Msa0643740:intron | 50.0% | |
| GGAAGGAAGGAAGGACTTTG+GGG | + | chr4_3:46962310-46962329 | Msa0643740:intron | 50.0% | |
| GAAGGAAGGAAGGACTTTGG+GGG | + | chr4_3:46962311-46962330 | Msa0643740:intron | 50.0% | |
| ! | CACTTTGAGAGGAGTATGGG+TGG | - | chr4_3:46962381-46962400 | None:intergenic | 50.0% |
| TGAACAGAGAAGACAGAGGG+AGG | - | chr4_3:46962549-46962568 | None:intergenic | 50.0% | |
| GGGATGAACAGAGAAGACAG+AGG | - | chr4_3:46962553-46962572 | None:intergenic | 50.0% | |
| ! | TGGGTTAAATGGAGGGGTGT+GGG | - | chr4_3:46962617-46962636 | None:intergenic | 50.0% |
| ! | ATGGGTTAAATGGAGGGGTG+TGG | - | chr4_3:46962618-46962637 | None:intergenic | 50.0% |
| GGCCACGCGTTTATAGAGTT+TGG | - | chr4_3:46962890-46962909 | None:intergenic | 50.0% | |
| GGAAGACATTGGCAGACAGT+AGG | + | chr4_3:46964096-46964115 | Msa0643740:CDS | 50.0% | |
| GACAGTAGGCCACGTATTAG+AGG | + | chr4_3:46964110-46964129 | Msa0643740:CDS | 50.0% | |
| ATGCAGCAGCACAACCACCT+TGG | + | chr4_3:46958249-46958268 | Msa0643740:CDS | 55.0% | |
| ! | CCGACTCGTATTCACCAAGG+TGG | - | chr4_3:46958266-46958285 | None:intergenic | 55.0% |
| !! | GGACCGACTCGTATTCACCA+AGG | - | chr4_3:46958269-46958288 | None:intergenic | 55.0% |
| CACCACCAGAGTTGAGCTGT+GGG | - | chr4_3:46958290-46958309 | None:intergenic | 55.0% | |
| AGCGGGTGCACTAGCTACTT+GGG | + | chr4_3:46958339-46958358 | Msa0643740:CDS | 55.0% | |
| CTCCTCTGCATCAATCGGTC+CGG | - | chr4_3:46958369-46958388 | None:intergenic | 55.0% | |
| GTAGAAAAAGGGCGGTGGTG+TGG | - | chr4_3:46958426-46958445 | None:intergenic | 55.0% | |
| GTGCGGCGAGTTTACAGTAC+TGG | + | chr4_3:46958483-46958502 | Msa0643740:CDS | 55.0% | |
| ! | AGAGGCGTAGATTCGAACCC+GGG | + | chr4_3:46958615-46958634 | Msa0643740:intron | 55.0% |
| AGTAGGGATGGGAATAGGCC+AGG | + | chr4_3:46958717-46958736 | Msa0643740:intron | 55.0% | |
| GCTAGGCCATAGGCAACTGT+AGG | - | chr4_3:46958747-46958766 | None:intergenic | 55.0% | |
| ACAGGTTAGCAGGCCGTATC+AGG | + | chr4_3:46959543-46959562 | Msa0643740:intron | 55.0% | |
| GGCCGTATCAGGCTTTCAGA+AGG | + | chr4_3:46959554-46959573 | Msa0643740:intron | 55.0% | |
| CTTATGAAAAGCCGCACGCC+AGG | + | chr4_3:46959601-46959620 | Msa0643740:intron | 55.0% | |
| CAAATTGGCAGGCCAGACTC+AGG | + | chr4_3:46959638-46959657 | Msa0643740:intron | 55.0% | |
| GGCTTTGCAAGACCTGAGTC+TGG | - | chr4_3:46959653-46959672 | None:intergenic | 55.0% | |
| !! | CCCCACAAAACTGGCTTGTG+AGG | + | chr4_3:46960515-46960534 | Msa0643740:intron | 55.0% |
| GAGTGTGGACATCGGTCTCA+AGG | + | chr4_3:46960743-46960762 | Msa0643740:intron | 55.0% | |
| GGCGGATGCTTGTGCATGAA+AGG | + | chr4_3:46961092-46961111 | Msa0643740:intron | 55.0% | |
| TTCCTCTGGGCTGTAAGGAC+TGG | - | chr4_3:46961763-46961782 | None:intergenic | 55.0% | |
| GCCCAGAGGAAAAGAAGGTG+AGG | + | chr4_3:46961772-46961791 | Msa0643740:intron | 55.0% | |
| CCGGCGAGACCTCTAAGTTA+TGG | + | chr4_3:46961994-46962013 | Msa0643740:intron | 55.0% | |
| CGAGTTTGGAGGGGAAAGGA+AGG | + | chr4_3:46962293-46962312 | Msa0643740:intron | 55.0% | |
| GAGGGGAAAGGAAGGAAGGA+AGG | + | chr4_3:46962301-46962320 | Msa0643740:intron | 55.0% | |
| ! | GTTAAATGGAGGGGTGTGGG+TGG | - | chr4_3:46962614-46962633 | None:intergenic | 55.0% |
| CTGCTGCATATCAGGCGTGG+TGG | - | chr4_3:46958238-46958257 | None:intergenic | 60.0% | |
| ! | GTGCTGCTGCATATCAGGCG+TGG | - | chr4_3:46958241-46958260 | None:intergenic | 60.0% |
| TCGGTCCCACAGCTCAACTC+TGG | + | chr4_3:46958282-46958301 | Msa0643740:CDS | 60.0% | |
| GTCCCACAGCTCAACTCTGG+TGG | + | chr4_3:46958285-46958304 | Msa0643740:CDS | 60.0% | |
| CCACCACCAGAGTTGAGCTG+TGG | - | chr4_3:46958291-46958310 | None:intergenic | 60.0% | |
| CCACAGCTCAACTCTGGTGG+TGG | + | chr4_3:46958288-46958307 | Msa0643740:CDS | 60.0% | |
| !! | CAGCTCAACTCTGGTGGTGG+TGG | + | chr4_3:46958291-46958310 | Msa0643740:CDS | 60.0% |
| !! | CTCAACTCTGGTGGTGGTGG+TGG | + | chr4_3:46958294-46958313 | Msa0643740:CDS | 60.0% |
| !! | AACTCTGGTGGTGGTGGTGG+TGG | + | chr4_3:46958297-46958316 | Msa0643740:CDS | 60.0% |
| CAGCGGGTGCACTAGCTACT+TGG | + | chr4_3:46958338-46958357 | Msa0643740:CDS | 60.0% | |
| GCGGGTGCACTAGCTACTTG+GGG | + | chr4_3:46958340-46958359 | Msa0643740:CDS | 60.0% | |
| CACTAGCTACTTGGGGTCGC+CGG | + | chr4_3:46958347-46958366 | Msa0643740:CDS | 60.0% | |
| GGCCATAGGCAACTGTAGGC+CGG | - | chr4_3:46958743-46958762 | None:intergenic | 60.0% | |
| CCTGTCGTACGCTAGGCCAT+AGG | - | chr4_3:46958757-46958776 | None:intergenic | 60.0% | |
| CCTATGGCCTAGCGTACGAC+AGG | + | chr4_3:46958754-46958773 | Msa0643740:intron | 60.0% | |
| AAAAGCCGCACGCCAGGCTT+AGG | + | chr4_3:46959607-46959626 | Msa0643740:intron | 60.0% | |
| GGAATAGGCTAGGCCGAGCT+AGG | - | chr4_3:46959674-46959693 | None:intergenic | 60.0% | |
| AGCCAGTCCTTACAGCCCAG+AGG | + | chr4_3:46961758-46961777 | Msa0643740:CDS | 60.0% | |
| CGCCGGACCGATTGATGCAG+AGG | + | chr4_3:46958364-46958383 | Msa0643740:CDS | 65.0% | |
| GGGATGGGAATAGGCCAGGC+CGG | + | chr4_3:46958721-46958740 | Msa0643740:intron | 65.0% | |
| TAGGCAACTGTAGGCCGGCC+TGG | - | chr4_3:46958738-46958757 | None:intergenic | 65.0% | |
| GGCCGGCCTACAGTTGCCTA+TGG | + | chr4_3:46958738-46958757 | Msa0643740:intron | 65.0% | |
| GAAGGCCTAAGCCTGGCGTG+CGG | - | chr4_3:46959615-46959634 | None:intergenic | 65.0% | |
| CATGCACAAGCATCCGCCCC+TGG | - | chr4_3:46961090-46961109 | None:intergenic | 65.0% | |
| GGCCTAGCGTACGACAGGCC+AGG | + | chr4_3:46958759-46958778 | Msa0643740:intron | 70.0% | |
| GGCCTGGCCTGTCGTACGCT+AGG | - | chr4_3:46958764-46958783 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 46958207 | 46964405 | 46958207 | ID=Msa0643740;Name=Msa0643740 |
| chr4_3 | mRNA | 46958207 | 46964405 | 46958207 | ID=Msa0643740-mRNA-1;Parent=Msa0643740;Name=Msa0643740-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|1|0.33|1|1|1|3|83|222 |
| chr4_3 | exon | 46958207 | 46958518 | 46958207 | ID=Msa0643740-mRNA-1:exon:11033;Parent=Msa0643740-mRNA-1 |
| chr4_3 | exon | 46961669 | 46961788 | 46961669 | ID=Msa0643740-mRNA-1:exon:11034;Parent=Msa0643740-mRNA-1 |
| chr4_3 | exon | 46964086 | 46964405 | 46964086 | ID=Msa0643740-mRNA-1:exon:11035;Parent=Msa0643740-mRNA-1 |
| chr4_3 | CDS | 46958207 | 46958518 | 46958207 | ID=Msa0643740-mRNA-1:cds;Parent=Msa0643740-mRNA-1 |
| chr4_3 | CDS | 46961669 | 46961788 | 46961669 | ID=Msa0643740-mRNA-1:cds;Parent=Msa0643740-mRNA-1 |
| chr4_3 | CDS | 46964086 | 46964322 | 46964086 | ID=Msa0643740-mRNA-1:cds;Parent=Msa0643740-mRNA-1 |
| chr4_3 | three_prime_UTR | 46964323 | 46964405 | 46964323 | ID=Msa0643740-mRNA-1:three_prime_utr;Parent=Msa0643740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
