AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0644000

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644000 MtrunA17_Chr4g0030881 96.154 260 3 1 1 253 1 260 0.0 516
Msa0644000 MtrunA17_Chr2g0327821 59.231 260 62 12 1 243 1 233 3.80e-86 256
Msa0644000 MtrunA17_Chr1g0168661 65.455 110 38 0 1 110 15 124 1.97e-51 168
Msa0644000 MtrunA17_Chr1g0186061 61.818 110 42 0 1 110 14 123 1.55e-48 160
Msa0644000 MtrunA17_Chr1g0209661 63.208 106 39 0 8 113 28 133 2.52e-48 162
Msa0644000 MtrunA17_Chr1g0194301 58.974 117 45 1 2 115 25 141 4.39e-47 157
Msa0644000 MtrunA17_Chr7g0228231 60.377 106 42 0 8 113 15 120 1.53e-45 151
Msa0644000 MtrunA17_Chr6g0450101 60.377 106 42 0 8 113 15 120 1.82e-45 151
Msa0644000 MtrunA17_Chr1g0180391 63.107 103 38 0 8 110 20 122 4.41e-45 151
Msa0644000 MtrunA17_Chr1g0194291 60.185 108 43 0 8 115 22 129 5.83e-44 149
Msa0644000 MtrunA17_Chr4g0057031 61.165 103 40 0 8 110 13 115 1.93e-41 143
Msa0644000 MtrunA17_Chr3g0131121 57.009 107 46 0 4 110 9 115 3.66e-40 140
Msa0644000 MtrunA17_Chr4g0055981 44.371 151 75 2 3 153 51 192 5.37e-40 138
Msa0644000 MtrunA17_Chr5g0410961 59.223 103 42 0 8 110 13 115 8.25e-40 140
Msa0644000 MtrunA17_Chr5g0434571 51.587 126 57 1 8 129 49 174 1.20e-39 140
Msa0644000 MtrunA17_Chr3g0115821 56.604 106 46 0 8 113 13 118 2.61e-39 139
Msa0644000 MtrunA17_Chr8g0346561 52.500 120 55 1 9 128 14 131 3.29e-39 138
Msa0644000 MtrunA17_Chr3g0110351 59.223 103 42 0 8 110 13 115 3.54e-39 138
Msa0644000 MtrunA17_Chr7g0275911 57.843 102 43 0 9 110 14 115 3.79e-39 136
Msa0644000 MtrunA17_Chr1g0211161 54.206 107 49 0 8 114 14 120 5.32e-39 135
Msa0644000 MtrunA17_Chr4g0037141 50.000 136 64 2 7 139 12 146 8.02e-39 136
Msa0644000 MtrunA17_Chr4g0048511 56.311 103 45 0 8 110 14 116 9.09e-39 138
Msa0644000 MtrunA17_Chr3g0117091 54.206 107 49 0 8 114 13 119 1.05e-38 137
Msa0644000 MtrunA17_Chr4g0042671 46.000 150 78 1 8 154 13 162 1.31e-38 139
Msa0644000 MtrunA17_Chr1g0187761 48.507 134 63 1 8 135 13 146 1.38e-38 135
Msa0644000 MtrunA17_Chr2g0323411 56.311 103 45 0 8 110 13 115 2.55e-38 136
Msa0644000 MtrunA17_Chr2g0281071 57.282 103 44 0 8 110 14 116 2.92e-38 136
Msa0644000 MtrunA17_Chr2g0293911 58.333 108 45 0 8 115 25 132 3.70e-38 135
Msa0644000 MtrunA17_Chr4g0068921 57.407 108 46 0 8 115 25 132 3.84e-38 132
Msa0644000 MtrunA17_Chr2g0330041 53.398 103 48 0 8 110 13 115 4.29e-38 137
Msa0644000 MtrunA17_Chr8g0349261 57.692 104 43 1 8 110 14 117 4.91e-38 134
Msa0644000 MtrunA17_Chr5g0435101 55.882 102 45 0 9 110 13 114 5.01e-38 132
Msa0644000 MtrunA17_Chr7g0261281 49.180 122 62 0 8 129 13 134 5.58e-38 134
Msa0644000 MtrunA17_Chr4g0044421 56.863 102 44 0 9 110 14 115 5.67e-38 131
Msa0644000 MtrunA17_Chr7g0274581 54.369 103 47 0 8 110 13 115 5.93e-38 132
Msa0644000 MtrunA17_Chr7g0228891 56.311 103 45 0 8 110 13 115 8.22e-38 133
Msa0644000 MtrunA17_Chr3g0121241 56.311 103 45 0 8 110 43 145 1.08e-37 134
Msa0644000 MtrunA17_Chr8g0385321 54.808 104 47 0 7 110 12 115 1.24e-37 134
Msa0644000 MtrunA17_Chr1g0193371 55.660 106 47 0 8 113 13 118 1.30e-37 135
Msa0644000 MtrunA17_Chr1g0167691 55.340 103 46 0 8 110 13 115 1.31e-37 132
Msa0644000 MtrunA17_Chr4g0022901 56.311 103 45 0 8 110 14 116 2.01e-37 132
Msa0644000 MtrunA17_Chr4g0039971 54.717 106 48 0 8 113 14 119 2.12e-37 134
Msa0644000 MtrunA17_Chr4g0032401 51.724 116 56 0 8 123 18 133 2.27e-37 134
Msa0644000 MtrunA17_Chr4g0022931 56.311 103 45 0 8 110 14 116 2.31e-37 132
Msa0644000 MtrunA17_Chr7g0217741 56.311 103 45 0 8 110 13 115 3.06e-37 133
Msa0644000 MtrunA17_Chr7g0270891 56.075 107 47 0 8 114 13 119 3.40e-37 134
Msa0644000 MtrunA17_Chr5g0395281 53.774 106 49 0 8 113 13 118 4.15e-37 132
Msa0644000 MtrunA17_Chr2g0328771 51.639 122 57 1 8 127 21 142 4.70e-37 132
Msa0644000 MtrunA17_Chr3g0088461 57.282 103 44 0 8 110 23 125 4.77e-37 133
Msa0644000 MtrunA17_Chr4g0070611 49.593 123 58 1 2 120 7 129 8.71e-37 132
Msa0644000 MtrunA17_Chr8g0342541 52.427 103 49 0 8 110 13 115 1.00e-36 132
Msa0644000 MtrunA17_Chr2g0323351 48.780 123 63 0 8 130 13 135 1.08e-36 130
Msa0644000 MtrunA17_Chr2g0311221 57.576 99 42 0 8 106 15 113 1.30e-36 132
Msa0644000 MtrunA17_Chr4g0022881 54.369 103 47 0 7 109 12 114 1.46e-36 129
Msa0644000 MtrunA17_Chr4g0070641 53.211 109 51 0 2 110 7 115 1.57e-36 127
Msa0644000 MtrunA17_Chr4g0068061 56.311 103 45 0 8 110 13 115 1.57e-36 132
Msa0644000 MtrunA17_Chr1g0203411 47.368 133 65 2 8 137 13 143 1.82e-36 130
Msa0644000 MtrunA17_Chr1g0167661 40.761 184 102 4 8 191 13 189 2.02e-36 129
Msa0644000 MtrunA17_Chr6g0470971 51.852 108 52 0 8 115 15 122 2.48e-36 130
Msa0644000 MtrunA17_Chr8g0342481 51.818 110 52 1 2 110 7 116 2.70e-36 132
Msa0644000 MtrunA17_Chr8g0342521 53.398 103 48 0 8 110 13 115 2.78e-36 131
Msa0644000 MtrunA17_Chr1g0193801 54.206 107 49 0 8 114 13 119 3.01e-36 132
Msa0644000 MtrunA17_Chr4g0058631 54.206 107 49 0 8 114 13 119 3.11e-36 131
Msa0644000 MtrunA17_Chr6g0453471 46.377 138 68 1 8 139 13 150 4.62e-36 131
Msa0644000 MtrunA17_Chr3g0103281 54.369 103 47 0 8 110 13 115 5.86e-36 130
Msa0644000 MtrunA17_Chr4g0022911 54.369 103 47 0 8 110 14 116 5.87e-36 129
Msa0644000 MtrunA17_Chr2g0309911 48.624 109 56 0 2 110 6 114 6.31e-36 129
Msa0644000 MtrunA17_Chr3g0080861 55.238 105 47 0 6 110 36 140 6.90e-36 133
Msa0644000 MtrunA17_Chr1g0154031 40.217 184 89 6 8 191 77 239 1.03e-35 131
Msa0644000 MtrunA17_Chr1g0203441 52.830 106 50 0 8 113 14 119 1.12e-35 128
Msa0644000 MtrunA17_Chr8g0387421 51.376 109 53 0 2 110 7 115 1.58e-35 129
Msa0644000 MtrunA17_Chr3g0099131 51.887 106 51 0 8 113 42 147 1.79e-35 132
Msa0644000 MtrunA17_Chr8g0354661 53.333 105 49 0 6 110 36 140 3.65e-35 131
Msa0644000 MtrunA17_Chr6g0452271 53.398 103 48 0 8 110 13 115 4.91e-35 127
Msa0644000 MtrunA17_Chr7g0271241 57.732 97 41 0 8 104 13 109 1.10e-34 128
Msa0644000 MtrunA17_Chr8g0343831 52.941 102 48 0 9 110 10 111 1.90e-34 124
Msa0644000 MtrunA17_Chr5g0397231 37.433 187 115 2 2 188 7 191 2.41e-34 126
Msa0644000 MtrunA17_Chr2g0322521 55.660 106 46 1 8 112 30 135 4.54e-34 126
Msa0644000 MtrunA17_Chr7g0254411 41.611 149 87 0 8 156 13 161 6.06e-34 125
Msa0644000 MtrunA17_Chr1g0194951 52.427 103 49 0 8 110 13 115 9.42e-34 125
Msa0644000 MtrunA17_Chr1g0151941 43.972 141 75 2 4 140 9 149 1.00e-33 122
Msa0644000 MtrunA17_Chr4g0022891 43.182 132 73 2 8 137 13 144 1.09e-33 122
Msa0644000 MtrunA17_Chr7g0217221 51.402 107 52 0 4 110 9 115 1.61e-33 122
Msa0644000 MtrunA17_Chr7g0247131 67.123 73 24 0 38 110 9 81 1.97e-32 119
Msa0644000 MtrunA17_Chr1g0192411 51.456 103 50 0 8 110 13 115 2.48e-32 122
Msa0644000 MtrunA17_Chr3g0092401 50.485 103 51 0 8 110 14 116 2.92e-32 120
Msa0644000 MtrunA17_Chr8g0360111 50.000 100 50 0 8 107 26 125 1.19e-31 117
Msa0644000 MtrunA17_Chr4g0060721 49.515 103 52 0 8 110 14 116 2.29e-31 118
Msa0644000 MtrunA17_Chr5g0434931 49.515 103 52 0 8 110 36 138 3.11e-31 116
Msa0644000 MtrunA17_Chr5g0417821 49.515 103 52 0 8 110 8 110 3.18e-31 117
Msa0644000 MtrunA17_Chr7g0240821 48.000 100 52 0 11 110 5 104 4.14e-31 115
Msa0644000 MtrunA17_Chr3g0135311 41.781 146 79 2 8 147 13 158 4.94e-31 117
Msa0644000 MtrunA17_Chr5g0434911 48.544 103 53 0 8 110 22 124 8.90e-31 115
Msa0644000 MtrunA17_Chr5g0441131 36.747 166 91 3 7 171 9 161 2.60e-30 111
Msa0644000 MtrunA17_Chr5g0434831 49.515 103 52 0 8 110 8 110 2.92e-30 111
Msa0644000 MtrunA17_Chr7g0269831 53.398 103 48 0 8 110 13 115 3.18e-30 115
Msa0644000 MtrunA17_Chr8g0334881 52.294 109 49 2 4 111 7 113 3.42e-30 114
Msa0644000 MtrunA17_Chr6g0453211 49.515 103 52 0 4 106 9 111 4.23e-30 114
Msa0644000 MtrunA17_Chr4g0008551 47.273 110 55 2 9 117 38 145 8.43e-30 114
Msa0644000 MtrunA17_Chr7g0264641 48.077 104 53 1 8 110 13 116 1.28e-29 112
Msa0644000 MtrunA17_Chr1g0152011 49.038 104 52 1 8 110 13 116 2.20e-29 113
Msa0644000 MtrunA17_Chr7g0220341 45.299 117 60 2 8 120 26 142 2.44e-29 111
Msa0644000 MtrunA17_Chr7g0228991 47.573 103 54 0 8 110 30 132 2.54e-29 111
Msa0644000 MtrunA17_Chr5g0434841 47.573 103 54 0 8 110 21 123 2.72e-29 112
Msa0644000 MtrunA17_Chr5g0440781 46.154 104 55 1 7 109 12 115 3.38e-29 108
Msa0644000 MtrunA17_Chr5g0400821 48.113 106 50 2 8 110 13 116 4.32e-29 111
Msa0644000 MtrunA17_Chr4g0013361 33.478 230 135 7 8 233 11 226 4.34e-29 111
Msa0644000 MtrunA17_Chr5g0440761 35.849 159 85 4 7 164 12 154 6.68e-29 110
Msa0644000 MtrunA17_Chr5g0441141 35.849 159 85 4 7 164 12 154 8.22e-29 110
Msa0644000 MtrunA17_Chr5g0429661 44.882 127 65 3 3 126 116 240 2.98e-28 110
Msa0644000 MtrunA17_Chr4g0028311 47.115 104 54 1 8 110 13 116 3.26e-28 109
Msa0644000 MtrunA17_Chr2g0327351 48.485 99 50 1 8 105 13 111 3.71e-28 109
Msa0644000 MtrunA17_Chr4g0053431 44.660 103 54 2 9 110 5 105 8.51e-28 107
Msa0644000 MtrunA17_Chr5g0401731 47.059 102 53 1 9 110 15 115 1.42e-27 107
Msa0644000 MtrunA17_Chr4g0054391 49.485 97 48 1 8 103 13 109 1.66e-27 107
Msa0644000 MtrunA17_Chr6g0454921 46.078 102 54 1 9 110 15 115 2.16e-27 104
Msa0644000 MtrunA17_Chr6g0487491 38.028 142 76 3 8 140 13 151 3.58e-27 105
Msa0644000 MtrunA17_Chr7g0238631 49.020 102 51 1 9 110 113 213 4.67e-27 109
Msa0644000 MtrunA17_Chr7g0238631 37.000 100 61 2 9 107 61 159 1.87e-13 69.7
Msa0644000 MtrunA17_Chr4g0072751 48.485 99 50 1 8 105 13 111 5.43e-27 106
Msa0644000 MtrunA17_Chr3g0133601 44.660 103 54 2 9 110 37 137 7.69e-26 101
Msa0644000 MtrunA17_Chr5g0417621 49.533 107 50 3 9 113 134 238 1.11e-25 104
Msa0644000 MtrunA17_Chr4g0042501 45.217 115 59 3 5 117 101 213 1.46e-25 103
Msa0644000 MtrunA17_Chr7g0228531 45.133 113 60 2 9 121 220 330 2.51e-24 100
Msa0644000 MtrunA17_Chr3g0099141 48.148 81 42 0 8 88 41 121 4.21e-24 94.4
Msa0644000 MtrunA17_Chr5g0437321 46.000 100 51 2 9 107 19 116 5.37e-24 97.8
Msa0644000 MtrunA17_Chr4g0058991 44.340 106 56 2 6 110 206 309 5.70e-24 99.8
Msa0644000 MtrunA17_Chr2g0323321 52.500 80 38 0 8 87 12 91 9.99e-24 92.4
Msa0644000 MtrunA17_Chr6g0480581 40.299 134 78 2 9 141 4 136 2.09e-23 95.1
Msa0644000 MtrunA17_Chr7g0229101 56.338 71 31 0 38 108 3 73 2.33e-23 94.0
Msa0644000 MtrunA17_Chr5g0397841 36.571 175 103 3 9 176 110 283 3.71e-23 97.8
Msa0644000 MtrunA17_Chr3g0117511 42.056 107 61 1 9 115 183 288 4.99e-23 97.1
Msa0644000 MtrunA17_Chr8g0342511 50.667 75 37 0 8 82 13 87 5.38e-23 90.1
Msa0644000 MtrunA17_Chr4g0042611 51.316 76 37 0 8 83 13 88 6.51e-23 89.4
Msa0644000 MtrunA17_Chr8g0342471 48.810 84 42 1 2 84 7 90 8.43e-23 90.9
Msa0644000 MtrunA17_Chr3g0139671 41.748 103 57 2 9 110 85 185 1.34e-22 96.7
Msa0644000 MtrunA17_Chr3g0139671 34.314 102 65 2 7 107 31 131 9.06e-12 64.7
Msa0644000 MtrunA17_Chr7g0229131 48.780 82 42 0 38 119 3 84 3.33e-22 90.1
Msa0644000 MtrunA17_Chr8g0342461 47.619 84 43 1 2 84 7 90 3.39e-22 89.4
Msa0644000 MtrunA17_Chr5g0395221 51.316 76 37 0 8 83 13 88 4.78e-22 87.0
Msa0644000 MtrunA17_Chr6g0460661 40.566 106 58 3 9 113 16 117 4.91e-22 89.4
Msa0644000 MtrunA17_Chr3g0125801 47.706 109 53 3 9 115 16 122 5.86e-22 92.0
Msa0644000 MtrunA17_Chr8g0342531 49.351 77 39 0 8 84 13 89 5.94e-22 89.4
Msa0644000 MtrunA17_Chr6g0460671 41.818 110 61 2 5 113 95 202 6.87e-22 92.8
Msa0644000 MtrunA17_Chr1g0157731 40.777 103 58 2 9 110 91 191 1.68e-21 93.6
Msa0644000 MtrunA17_Chr1g0157731 35.294 102 64 2 7 107 37 137 1.75e-12 67.0
Msa0644000 MtrunA17_Chr2g0294811 48.684 76 39 0 8 83 13 88 4.91e-21 85.5
Msa0644000 MtrunA17_Chr5g0434901 53.521 71 33 0 38 108 4 74 5.86e-21 85.1
Msa0644000 MtrunA17_Chr7g0254261 42.342 111 60 3 5 113 85 193 7.23e-21 90.1
Msa0644000 MtrunA17_Chr3g0093811 51.316 76 37 0 38 113 13 88 7.64e-21 88.6
Msa0644000 MtrunA17_Chr5g0425591 44.578 83 45 1 7 88 9 91 1.02e-19 81.3
Msa0644000 MtrunA17_Chr6g0453751 44.444 90 41 2 8 88 21 110 1.22e-19 82.0
Msa0644000 MtrunA17_Chr7g0228481 41.593 113 64 2 9 121 220 330 2.03e-19 86.7
Msa0644000 MtrunA17_Chr7g0238651 35.849 106 66 1 12 115 10 115 1.67e-18 83.6
Msa0644000 MtrunA17_Chr7g0228401 43.750 96 53 1 20 115 290 384 2.91e-18 83.6
Msa0644000 MtrunA17_Chr5g0416341 40.196 102 59 2 12 113 29 128 4.04e-18 83.2
Msa0644000 MtrunA17_Chr7g0233061 34.862 109 68 2 9 117 180 285 8.36e-17 79.0
Msa0644000 MtrunA17_Chr8g0362231 39.216 102 60 2 12 113 25 124 2.69e-16 77.8
Msa0644000 MtrunA17_Chr1g0177901 32.075 159 82 5 20 154 5 161 4.56e-16 74.7
Msa0644000 MtrunA17_Chr5g0434871 57.143 42 18 0 69 110 2 43 3.41e-12 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0644000 AT3G46130.1 54.902 255 93 8 1 242 3 248 1.48e-79 240
Msa0644000 AT5G59780.3 60.435 230 74 7 2 230 3 216 2.89e-79 239
Msa0644000 AT5G59780.2 57.812 192 64 7 40 230 20 195 1.72e-57 182
Msa0644000 AT3G46130.3 51.376 218 84 8 38 242 8 216 2.68e-57 182
Msa0644000 AT3G46130.4 51.389 216 83 8 40 242 20 226 9.22e-57 181
Msa0644000 AT3G24310.1 69.903 103 31 0 8 110 19 121 4.00e-50 166
Msa0644000 AT4G13480.1 65.138 109 38 0 2 110 1 109 7.35e-50 164
Msa0644000 AT3G53200.1 64.815 108 38 0 4 111 6 113 3.77e-49 162
Msa0644000 AT3G30210.1 43.363 226 98 5 8 227 28 229 8.78e-49 162
Msa0644000 AT3G27810.1 40.594 202 89 4 8 178 21 222 8.09e-48 158
Msa0644000 AT5G40350.1 39.631 217 106 3 8 224 18 209 1.75e-47 157
Msa0644000 AT1G25340.1 63.208 106 39 0 8 113 19 124 7.07e-47 157
Msa0644000 AT1G68320.1 62.264 106 40 0 8 113 20 125 2.54e-46 156
Msa0644000 AT2G47190.1 64.078 103 37 0 8 110 21 123 7.78e-46 154
Msa0644000 AT1G48000.1 59.804 102 41 0 8 109 33 134 6.42e-44 149
Msa0644000 AT3G01530.1 42.197 173 89 3 8 173 26 194 3.04e-43 145
Msa0644000 AT1G79180.1 46.053 152 75 1 8 159 15 159 1.78e-42 146
Msa0644000 AT1G25340.2 60.377 106 37 1 8 113 19 119 3.32e-42 145
Msa0644000 AT1G25340.3 60.377 106 37 1 8 113 19 119 6.52e-42 145
Msa0644000 AT5G10280.1 57.547 106 45 0 8 113 13 118 1.08e-40 143
Msa0644000 AT2G31180.1 56.604 106 46 0 8 113 13 118 2.03e-40 140
Msa0644000 AT4G12350.1 59.048 105 43 0 6 110 11 115 5.11e-40 140
Msa0644000 AT1G66230.1 61.165 103 40 0 8 110 13 115 8.25e-40 139
Msa0644000 AT1G06180.1 57.282 103 44 0 8 110 13 115 1.37e-39 137
Msa0644000 AT3G06490.1 57.407 108 46 0 8 115 20 127 2.77e-39 139
Msa0644000 AT5G16770.4 58.491 106 44 0 8 113 13 118 3.89e-39 139
Msa0644000 AT5G16770.3 58.491 106 44 0 8 113 13 118 3.89e-39 139
Msa0644000 AT4G22680.1 59.223 103 42 0 8 110 13 115 4.26e-39 137
Msa0644000 AT5G16770.1 58.491 106 44 0 8 113 13 118 6.44e-39 138
Msa0644000 AT5G16770.2 58.491 106 44 0 8 113 13 118 6.44e-39 138
Msa0644000 AT5G52600.1 42.169 166 95 1 8 172 13 178 7.68e-39 134
Msa0644000 AT4G38620.1 56.731 104 45 0 7 110 12 115 8.88e-39 136
Msa0644000 AT4G05100.1 57.282 103 44 0 8 110 14 116 8.98e-39 137
Msa0644000 AT3G02940.2 58.491 106 44 0 8 113 13 118 9.52e-39 137
Msa0644000 AT5G59780.1 53.293 167 61 7 65 230 1 151 1.00e-38 133
Msa0644000 AT3G01140.2 49.275 138 63 2 8 138 13 150 1.19e-38 138
Msa0644000 AT1G16490.1 42.308 156 89 1 8 163 15 169 1.31e-38 136
Msa0644000 AT4G21440.1 47.552 143 67 2 8 145 13 152 1.43e-38 137
Msa0644000 AT5G65230.1 54.717 106 48 0 8 113 13 118 1.53e-38 137
Msa0644000 AT4G28110.1 56.311 103 45 0 8 110 13 115 1.59e-38 136
Msa0644000 AT3G02940.1 58.491 106 44 0 8 113 13 118 1.73e-38 137
Msa0644000 AT3G02940.3 58.491 106 44 0 8 113 13 118 1.73e-38 137
Msa0644000 AT4G17785.2 56.604 106 46 0 8 113 14 119 2.25e-38 137
Msa0644000 AT5G16600.1 60.194 103 41 0 8 110 13 115 2.28e-38 137
Msa0644000 AT5G14750.1 47.101 138 67 2 8 139 17 154 2.51e-38 133
Msa0644000 AT3G01140.1 49.275 138 63 2 8 138 56 193 2.64e-38 138
Msa0644000 AT4G17785.1 56.604 106 46 0 8 113 14 119 2.76e-38 137
Msa0644000 AT3G13540.1 56.075 107 47 0 8 114 24 130 5.34e-38 134
Msa0644000 AT3G46130.2 46.597 191 80 8 65 242 1 182 5.63e-38 132
Msa0644000 AT3G23250.1 49.254 134 67 1 8 141 13 145 5.82e-38 134
Msa0644000 AT3G48920.1 51.538 130 58 1 1 125 12 141 6.71e-38 134
Msa0644000 AT3G13890.2 54.369 103 47 0 8 110 13 115 7.04e-38 136
Msa0644000 AT1G09540.1 56.604 106 46 0 8 113 13 118 9.15e-38 136
Msa0644000 AT5G54230.1 57.282 103 44 0 8 110 13 115 9.28e-38 135
Msa0644000 AT5G26660.1 56.311 103 45 0 8 110 13 115 1.05e-37 135
Msa0644000 AT5G49620.1 56.481 108 47 0 8 115 27 134 1.46e-37 134
Msa0644000 AT4G26930.1 51.852 108 52 0 6 113 18 125 1.90e-37 135
Msa0644000 AT2G32460.2 56.604 106 45 1 8 112 7 112 2.45e-37 137
Msa0644000 AT5G14340.1 57.282 103 44 0 8 110 25 127 2.57e-37 132
Msa0644000 AT2G32460.1 56.604 106 45 1 8 112 19 124 2.63e-37 137
Msa0644000 AT1G35515.1 57.843 102 43 0 9 110 14 115 2.80e-37 130
Msa0644000 AT4G34990.1 48.837 129 64 1 7 135 12 138 3.72e-37 132
Msa0644000 AT2G26960.1 44.231 156 83 2 9 164 22 173 3.76e-37 135
Msa0644000 AT3G27810.2 40.000 170 71 4 40 178 4 173 5.23e-37 129
Msa0644000 AT2G16720.1 55.882 102 45 0 9 110 14 115 5.38e-37 131
Msa0644000 AT5G40350.2 39.459 185 87 3 40 224 5 164 6.00e-37 128
Msa0644000 AT1G34670.1 54.717 106 48 0 8 113 13 118 6.39e-37 134
Msa0644000 AT4G09460.1 54.808 104 47 0 7 110 12 115 6.56e-37 130
Msa0644000 AT1G57560.2 55.340 103 46 0 8 110 13 115 7.06e-37 131
Msa0644000 AT1G57560.1 55.340 103 46 0 8 110 13 115 8.99e-37 132
Msa0644000 AT3G61250.1 56.311 103 45 0 8 110 13 115 9.64e-37 132
Msa0644000 AT1G79180.2 36.444 225 90 6 8 182 15 236 1.02e-36 132
Msa0644000 AT5G40330.1 56.311 103 45 0 8 110 13 115 1.03e-36 129
Msa0644000 AT5G62320.1 56.364 110 41 1 8 110 14 123 1.28e-36 130
Msa0644000 AT5G15310.4 45.890 146 75 2 8 153 13 154 1.35e-36 130
Msa0644000 AT4G01680.3 56.311 103 45 0 8 110 13 115 1.54e-36 129
Msa0644000 AT1G22640.1 55.882 102 45 0 9 110 14 115 1.67e-36 130
Msa0644000 AT5G15310.1 45.890 146 75 2 8 153 13 154 1.72e-36 132
Msa0644000 AT5G15310.2 45.890 146 75 2 8 153 13 154 1.75e-36 131
Msa0644000 AT5G12870.1 56.311 103 45 0 8 110 19 121 1.84e-36 130
Msa0644000 AT3G08500.1 58.252 103 43 0 8 110 31 133 1.93e-36 132
Msa0644000 AT1G18570.1 47.183 142 66 3 8 142 14 153 2.03e-36 132
Msa0644000 AT4G01680.1 56.311 103 45 0 8 110 13 115 4.05e-36 131
Msa0644000 AT5G56110.1 54.206 107 49 0 4 110 9 115 4.12e-36 130
Msa0644000 AT2G47460.1 57.282 103 44 0 8 110 13 115 4.56e-36 131
Msa0644000 AT5G07690.1 48.819 127 61 1 8 130 13 139 5.27e-36 130
Msa0644000 AT1G56160.1 52.427 103 49 0 8 110 15 117 6.53e-36 129
Msa0644000 AT5G60890.1 49.550 111 56 0 4 114 9 119 1.47e-35 128
Msa0644000 AT5G55020.1 53.846 104 48 0 6 109 25 128 1.58e-35 132
Msa0644000 AT3G27920.1 44.853 136 65 1 8 133 15 150 1.68e-35 126
Msa0644000 AT3G28470.1 57.143 98 42 0 8 105 13 110 1.69e-35 129
Msa0644000 AT3G12820.1 51.456 103 50 0 8 110 15 117 3.48e-35 126
Msa0644000 AT3G62610.1 54.369 103 47 0 8 110 13 115 3.97e-35 128
Msa0644000 AT4G25560.1 52.830 106 50 0 5 110 8 113 4.65e-35 127
Msa0644000 AT5G61420.2 51.402 107 52 0 8 114 13 119 5.27e-35 129
Msa0644000 AT5G07700.1 53.398 103 48 0 8 110 13 115 6.34e-35 128
Msa0644000 AT5G07700.2 53.398 103 48 0 8 110 13 115 6.34e-35 128
Msa0644000 AT1G63910.1 45.238 126 66 1 2 124 7 132 6.91e-35 128
Msa0644000 AT3G13890.1 50.000 112 47 1 8 110 13 124 8.50e-35 128
Msa0644000 AT5G52260.1 48.438 128 63 1 8 132 13 140 9.59e-35 125
Msa0644000 AT1G74430.1 50.467 107 53 0 8 114 13 119 1.92e-34 125
Msa0644000 AT1G66370.1 47.619 126 63 1 8 130 9 134 1.94e-34 124
Msa0644000 AT3G53200.2 72.222 72 20 0 40 111 9 80 2.80e-34 122
Msa0644000 AT1G74080.1 53.922 102 47 0 8 109 13 114 2.93e-34 126
Msa0644000 AT5G49330.1 54.369 103 47 0 8 110 13 115 3.87e-34 126
Msa0644000 AT5G06100.1 51.923 104 50 0 8 111 33 136 6.09e-34 127
Msa0644000 AT3G11440.2 50.000 110 54 1 4 112 38 147 6.38e-34 127
Msa0644000 AT5G49620.2 50.000 122 47 1 8 115 27 148 7.24e-34 125
Msa0644000 AT3G12720.1 47.573 103 54 0 8 110 23 125 1.03e-33 124
Msa0644000 AT5G06100.5 51.923 104 50 0 8 111 33 136 1.59e-33 127
Msa0644000 AT5G06100.2 51.923 104 50 0 8 111 33 136 1.59e-33 127
Msa0644000 AT5G06100.3 51.923 104 50 0 8 111 33 136 1.59e-33 127
Msa0644000 AT5G06100.4 51.923 104 50 0 8 111 33 136 1.59e-33 127
Msa0644000 AT3G47600.1 42.177 147 79 1 8 154 13 153 1.85e-33 124
Msa0644000 AT3G11440.3 48.148 108 56 0 4 111 38 145 2.23e-33 127
Msa0644000 AT3G11440.4 48.148 108 56 0 4 111 38 145 2.23e-33 127
Msa0644000 AT3G11440.1 48.148 108 56 0 4 111 38 145 2.23e-33 127
Msa0644000 AT5G35550.1 46.400 125 60 1 2 119 9 133 6.45e-33 120
Msa0644000 AT4G01680.2 50.435 115 45 1 8 110 13 127 1.02e-32 122
Msa0644000 AT1G08810.1 50.485 103 51 0 8 110 13 115 2.30e-32 120
Msa0644000 AT1G18710.1 49.515 103 52 0 8 110 13 115 3.07e-32 119
Msa0644000 AT1G74650.1 49.074 108 55 0 8 115 13 120 1.26e-31 119
Msa0644000 AT3G28910.1 50.485 103 51 0 8 110 13 115 2.66e-31 118
Msa0644000 AT5G62470.2 50.485 103 51 0 8 110 13 115 5.55e-31 117
Msa0644000 AT5G14750.3 41.791 134 70 2 34 159 4 137 3.33e-30 111
Msa0644000 AT5G26660.2 66.197 71 24 0 40 110 14 84 7.44e-30 114
Msa0644000 AT5G57620.1 45.946 111 59 1 8 117 13 123 1.05e-29 114
Msa0644000 AT3G49690.1 46.429 112 55 2 8 116 13 122 1.65e-29 113
Msa0644000 AT5G62470.1 50.485 103 50 1 8 110 13 114 1.66e-29 114
Msa0644000 AT1G66380.1 52.427 103 49 0 8 110 9 111 3.20e-29 107
Msa0644000 AT5G23000.1 48.077 104 53 1 8 110 13 116 8.69e-29 111
Msa0644000 AT4G37780.1 45.536 112 60 1 8 118 13 124 9.92e-29 110
Msa0644000 AT1G56650.1 45.968 124 62 1 8 126 9 132 1.11e-28 109
Msa0644000 AT3G60460.1 49.565 115 55 2 4 117 8 120 1.33e-28 110
Msa0644000 AT5G65790.1 45.536 112 56 2 8 116 13 122 1.40e-28 112
Msa0644000 AT2G39880.1 47.664 107 53 2 9 114 50 154 4.90e-28 110
Msa0644000 AT1G66390.1 50.485 103 51 0 8 110 9 111 5.75e-28 107
Msa0644000 AT2G26950.1 46.729 107 55 1 9 115 18 122 7.93e-28 110
Msa0644000 AT5G35550.2 50.495 101 43 1 26 119 36 136 1.20e-27 107
Msa0644000 AT3G09230.1 49.020 102 51 1 9 110 55 155 1.28e-27 109
Msa0644000 AT2G36890.1 46.226 106 52 2 8 110 13 116 1.24e-26 105
Msa0644000 AT3G12820.2 59.155 71 29 0 43 113 2 72 1.66e-26 102
Msa0644000 AT2G36890.2 46.226 106 52 2 8 110 54 157 2.20e-26 105
Msa0644000 AT3G55730.1 47.619 105 52 2 9 112 56 158 2.62e-26 106
Msa0644000 AT3G47600.2 45.217 115 57 1 40 154 39 147 3.57e-26 104
Msa0644000 AT3G09370.1 47.059 102 53 1 9 110 130 230 8.45e-26 105
Msa0644000 AT3G09370.1 39.000 100 59 2 9 107 78 176 5.52e-13 68.6
Msa0644000 AT3G09370.2 47.059 102 53 1 9 110 135 235 9.19e-26 105
Msa0644000 AT3G09370.2 39.000 100 59 2 9 107 83 181 5.55e-13 68.6
Msa0644000 AT1G69560.1 47.573 103 51 2 9 110 107 207 9.34e-26 103
Msa0644000 AT1G69560.2 47.573 103 51 2 9 110 123 223 1.06e-25 103
Msa0644000 AT3G09370.3 47.059 102 53 1 9 110 143 243 1.44e-25 105
Msa0644000 AT3G09370.3 39.000 100 59 2 9 107 91 189 6.26e-13 68.6
Msa0644000 AT5G02320.1 47.059 102 53 1 9 110 127 227 1.45e-25 105
Msa0644000 AT5G02320.1 36.000 100 62 2 9 107 75 173 6.99e-12 65.5
Msa0644000 AT5G02320.2 47.059 102 53 1 9 110 127 227 1.45e-25 105
Msa0644000 AT5G02320.2 36.000 100 62 2 9 107 75 173 6.99e-12 65.5
Msa0644000 AT3G27785.1 45.370 108 58 1 9 116 189 295 1.50e-25 104
Msa0644000 AT1G26780.1 47.573 103 51 2 9 110 98 198 1.71e-25 101
Msa0644000 AT5G02320.3 47.059 102 53 1 9 110 67 167 2.34e-25 104
Msa0644000 AT5G02320.3 36.000 100 62 2 9 107 15 113 9.79e-12 64.7
Msa0644000 AT1G26780.2 47.573 103 51 2 9 110 98 198 2.55e-25 102
Msa0644000 AT5G17800.1 38.686 137 78 3 2 133 86 221 2.70e-25 102
Msa0644000 AT3G50060.1 44.118 102 56 1 9 110 6 106 3.27e-25 101
Msa0644000 AT5G58850.1 41.129 124 69 3 9 131 105 225 7.17e-25 102
Msa0644000 AT5G11050.1 40.833 120 68 2 9 127 105 222 1.46e-24 101
Msa0644000 AT4G18770.1 42.735 117 63 2 9 122 217 332 1.51e-24 101
Msa0644000 AT5G67300.1 44.118 102 56 1 9 110 6 106 1.83e-24 99.8
Msa0644000 AT2G23290.1 46.078 102 54 1 9 110 13 113 1.98e-24 99.8
Msa0644000 AT1G17950.1 47.788 113 55 3 9 120 5 114 2.38e-24 98.2
Msa0644000 AT4G37260.1 43.396 106 59 1 9 114 13 117 1.21e-23 97.8
Msa0644000 AT5G11510.3 41.176 102 59 1 9 110 81 181 1.27e-22 97.1
Msa0644000 AT5G11510.3 35.294 102 64 2 7 107 27 127 2.89e-12 66.6
Msa0644000 AT5G11510.1 41.176 102 59 1 9 110 81 181 1.27e-22 97.1
Msa0644000 AT5G11510.1 35.294 102 64 2 7 107 27 127 2.89e-12 66.6
Msa0644000 AT5G11510.4 41.176 102 59 1 9 110 81 181 1.27e-22 97.1
Msa0644000 AT5G11510.4 35.294 102 64 2 7 107 27 127 2.89e-12 66.6
Msa0644000 AT5G11510.2 41.176 102 59 1 9 110 81 181 1.37e-22 97.1
Msa0644000 AT5G11510.2 35.294 102 64 2 7 107 27 127 2.77e-12 66.6
Msa0644000 AT5G11510.5 41.176 102 59 1 9 110 81 181 1.42e-22 97.1
Msa0644000 AT5G11510.5 35.294 102 64 2 7 107 27 127 2.72e-12 66.6
Msa0644000 AT4G33450.1 41.176 119 68 2 8 125 18 135 2.94e-22 92.4
Msa0644000 AT3G29020.1 35.878 131 80 2 4 131 57 186 3.66e-22 92.0
Msa0644000 AT1G73410.1 46.789 109 55 2 9 116 6 112 4.94e-22 91.7
Msa0644000 AT3G29020.2 35.878 131 80 2 4 131 59 188 8.77e-22 92.4
Msa0644000 AT1G73410.2 46.789 109 55 2 9 116 6 112 1.25e-21 89.7
Msa0644000 AT1G66380.3 57.895 76 32 0 35 110 3 78 1.89e-21 86.7
Msa0644000 AT2G25230.1 40.741 108 61 2 12 119 29 133 2.57e-21 89.7
Msa0644000 AT3G23250.2 49.438 89 44 1 53 141 1 88 3.38e-21 89.4
Msa0644000 AT5G14750.4 44.086 93 46 2 53 139 1 93 4.25e-21 86.7
Msa0644000 AT5G14750.2 44.086 93 46 2 53 139 1 93 4.25e-21 86.7
Msa0644000 AT5G40360.1 33.553 152 97 2 4 152 153 303 5.01e-21 90.9
Msa0644000 AT1G22640.3 63.793 58 21 0 53 110 1 58 6.93e-21 87.8
Msa0644000 AT4G32730.5 38.835 103 60 2 9 110 87 187 2.18e-20 90.5
Msa0644000 AT4G32730.5 33.333 102 66 2 7 107 33 133 1.73e-11 64.3
Msa0644000 AT4G32730.4 38.835 103 60 2 9 110 87 187 2.18e-20 90.5
Msa0644000 AT4G32730.4 33.333 102 66 2 7 107 33 133 1.73e-11 64.3
Msa0644000 AT4G32730.3 38.835 103 60 2 9 110 87 187 2.18e-20 90.5
Msa0644000 AT4G32730.3 33.333 102 66 2 7 107 33 133 1.73e-11 64.3
Msa0644000 AT4G32730.2 38.835 103 60 2 9 110 87 187 2.18e-20 90.5
Msa0644000 AT4G32730.2 33.333 102 66 2 7 107 33 133 1.73e-11 64.3
Msa0644000 AT4G32730.1 38.835 103 60 2 9 110 87 187 2.35e-20 90.5
Msa0644000 AT4G32730.1 33.333 102 66 2 7 107 33 133 1.61e-11 64.3
Msa0644000 AT2G37630.1 38.679 106 63 1 12 115 7 112 3.43e-19 85.9
Msa0644000 AT5G39700.1 39.216 102 61 1 8 109 55 155 7.75e-19 82.0
Msa0644000 AT2G02820.1 41.121 107 61 2 12 118 33 137 3.29e-18 84.0
Msa0644000 AT2G02820.2 41.121 107 61 2 12 118 33 137 3.38e-18 84.0
Msa0644000 AT2G02820.3 41.121 107 61 2 12 118 33 137 4.56e-18 82.4
Msa0644000 AT1G14350.2 41.176 102 58 2 12 113 28 127 6.47e-18 82.8
Msa0644000 AT1G14350.1 41.176 102 58 2 12 113 28 127 6.47e-18 82.8
Msa0644000 AT1G18960.1 37.143 105 63 2 9 113 10 111 9.17e-17 78.6
Msa0644000 AT1G71030.2 47.692 65 34 0 46 110 5 69 1.33e-16 75.9
Msa0644000 AT1G71030.1 47.692 65 34 0 46 110 19 83 2.07e-16 75.5
Msa0644000 AT5G40430.1 37.838 111 65 3 9 119 54 160 2.87e-16 76.3
Msa0644000 AT4G00540.2 34.266 143 88 4 8 146 102 242 1.04e-15 76.3
Msa0644000 AT4G00540.1 33.113 151 95 4 8 154 100 248 1.12e-15 76.3
Msa0644000 AT1G66380.2 45.000 80 44 0 8 87 9 88 5.66e-15 69.3
Msa0644000 AT3G18100.4 38.384 99 58 2 7 104 383 479 3.51e-14 72.4
Msa0644000 AT3G18100.1 38.384 99 58 2 7 104 544 640 3.69e-14 72.4
Msa0644000 AT3G18100.3 38.384 99 58 2 7 104 496 592 4.26e-14 72.0
Msa0644000 AT3G18100.2 38.384 99 58 2 7 104 331 427 4.92e-14 71.6
Msa0644000 AT4G25560.2 56.522 46 20 0 65 110 2 47 2.04e-13 67.8
Msa0644000 AT1G14350.3 30.968 155 78 6 17 170 2 128 1.07e-12 67.4
Msa0644000 AT1G14350.4 30.968 155 78 6 17 170 2 128 1.07e-12 67.4

Find 64 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATGGAACTTCACTCTAAA+TGG 0.146424 4_3:-47494550 Msa0644000:CDS
CATAACAAGTGTTTCTTCTT+GGG 0.234566 4_3:+47494568 None:intergenic
ATGCTATATACATGTTAATT+AGG 0.259653 4_3:+47493363 None:intergenic
TTCACTCTAAATGGGGAAAT+AGG 0.260240 4_3:-47494541 Msa0644000:intron
CCATAACAAGTGTTTCTTCT+TGG 0.289211 4_3:+47494567 None:intergenic
GGTTATTTGGTGATCGTAGA+TGG 0.292214 4_3:-47494811 Msa0644000:CDS
ATCTCATTGTCTGTTCTTCC+TGG 0.294103 4_3:+47493919 None:intergenic
GTTCTTCAACCTGTTCTTGA+TGG 0.305333 4_3:-47493640 Msa0644000:CDS
GATGATGTAGAAGGCATTAT+AGG 0.306843 4_3:+47493583 None:intergenic
GTAGATCAGGTAAGAGTTGC+AGG 0.324383 4_3:-47494643 Msa0644000:CDS
GGTACTCAATGGATGATATA+TGG 0.324488 4_3:-47493696 Msa0644000:CDS
ATCTTGCCGCGTTTGAGATC+AGG 0.339605 4_3:+47494596 None:intergenic
CTTGTTCAATTTCTTGTACT+TGG 0.347999 4_3:+47493719 None:intergenic
CAAGGGAACACATTTCTAAC+TGG 0.364614 4_3:-47493457 Msa0644000:CDS
ACAATGAGATTAAGAATTAC+TGG 0.365207 4_3:-47493906 Msa0644000:CDS
GTTCCCTTGTTGATCATAGA+AGG 0.376985 4_3:+47493471 None:intergenic
TATGGAACTTCACTCTAAAT+GGG 0.390577 4_3:-47494549 Msa0644000:CDS
AGAACAAGAAGATTACAAAT+TGG 0.394597 4_3:-47494846 Msa0644000:CDS
TAATCTTCTTGTTCTGTCCA+TGG 0.396833 4_3:+47494854 None:intergenic
GTTGTAGGTTTGAGTAGATC+AGG 0.410818 4_3:-47494656 Msa0644000:intron
TTCTTCTTCAGACTCTTTGT+TGG 0.419812 4_3:+47493747 None:intergenic
CCAAGAAGAAACACTTGTTA+TGG 0.427820 4_3:-47494567 Msa0644000:CDS
AAGATGTTATTCCCTCCTAT+TGG 0.427899 4_3:-47493508 Msa0644000:CDS
ATTGTCCGATCTCAAATTAA+CGG 0.444962 4_3:-47493216 Msa0644000:three_prime_UTR
TTCATATTTAGATCCATTGT+GGG 0.445170 4_3:-47493551 Msa0644000:CDS
TCACTAGTTCCATCAAGAAC+AGG 0.449699 4_3:+47493631 None:intergenic
TCACAAGAAATAAGCAGAAA+AGG 0.460369 4_3:-47494878 Msa0644000:CDS
TAATCCCATGATGATGTAGA+AGG 0.467172 4_3:+47493574 None:intergenic
TAAGAGTTGCAGGTTACGTT+GGG 0.469904 4_3:-47494633 Msa0644000:CDS
ATAACAAGTGTTTCTTCTTG+GGG 0.472612 4_3:+47494569 None:intergenic
TAGTATATGTCTTTCTGAAA+GGG 0.474936 4_3:-47493341 Msa0644000:three_prime_UTR
GTTATTTGGTGATCGTAGAT+GGG 0.492828 4_3:-47494810 Msa0644000:CDS
TAATGCCTTCTACATCATCA+TGG 0.505668 4_3:-47493579 Msa0644000:CDS
TCTTGCCGCGTTTGAGATCA+GGG 0.506546 4_3:+47494597 None:intergenic
ATAGTATATGTCTTTCTGAA+AGG 0.510625 4_3:-47493342 Msa0644000:three_prime_UTR
TTTAGATCCATTGTGGGTGA+TGG 0.511419 4_3:-47493545 Msa0644000:CDS
ATTCATATTTAGATCCATTG+TGG 0.525981 4_3:-47493552 Msa0644000:CDS
TGTTTGAGAAATGTGAGGAT+TGG 0.543506 4_3:+47493797 None:intergenic
TGGCAACTAGAAGATTGATC+AGG 0.550479 4_3:+47493817 None:intergenic
TTAGGCTATCTTATGACAGA+TGG 0.551465 4_3:+47493381 None:intergenic
AATTGAACAAGGGTACTCAA+TGG 0.554035 4_3:-47493707 Msa0644000:CDS
AAATATTGGTCACCAATAGG+AGG 0.555227 4_3:+47493496 None:intergenic
TACGTGTTTCTCTTTAAGCA+TGG 0.556053 4_3:-47493169 Msa0644000:three_prime_UTR
AAATAAGCAGAAAAGGTCCA+TGG 0.566374 4_3:-47494871 Msa0644000:CDS
CTCGACCGTTAATTTGAGAT+CGG 0.572874 4_3:+47493211 None:intergenic
CGATCTCAAATTAACGGTCG+AGG 0.575755 4_3:-47493210 Msa0644000:three_prime_UTR
GTAAGAGTTGCAGGTTACGT+TGG 0.576254 4_3:-47494634 Msa0644000:CDS
TCTTCATCCATCACCCACAA+TGG 0.577626 4_3:+47493538 None:intergenic
CAAGTACAAGAAATTGAACA+AGG 0.580887 4_3:-47493718 Msa0644000:CDS
AATGCCTTCTACATCATCAT+GGG 0.580960 4_3:-47493578 Msa0644000:CDS
TTTCCTTCTATGATCAACAA+GGG 0.589914 4_3:-47493474 Msa0644000:CDS
CTCAAACAGTAACCATGGTG+TGG 0.595976 4_3:-47493782 Msa0644000:CDS
TCTTCATCATCGATTTAGAT+CGG 0.603017 4_3:+47493274 None:intergenic
AATATTGGTCACCAATAGGA+GGG 0.618360 4_3:+47493497 None:intergenic
CATCATCGATTTAGATCGGA+CGG 0.631191 4_3:+47493278 None:intergenic
CATTTCTCAAACAGTAACCA+TGG 0.632435 4_3:-47493787 Msa0644000:CDS
ATGGAACTTCACTCTAAATG+GGG 0.635977 4_3:-47494548 Msa0644000:CDS
AGAATTGCTAGAAAACTACC+AGG 0.647884 4_3:-47493937 Msa0644000:CDS
GTTACTGTTTGAGAAATGTG+AGG 0.673513 4_3:+47493792 None:intergenic
TCAGGTGACGATGAAATCGA+AGG 0.678422 4_3:+47493835 None:intergenic
CTTCACCCTGATCTCAAACG+CGG 0.682346 4_3:-47494602 Msa0644000:CDS
AAGTACAAGAAATTGAACAA+GGG 0.689326 4_3:-47493717 Msa0644000:CDS
ATGAGATTAAGAATTACTGG+AGG 0.710072 4_3:-47493903 Msa0644000:CDS
AAGCATGTGAATCCACACCA+TGG 0.747748 4_3:+47493770 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGAAAATTCTTGAATATATT+TGG - chr4_3:47493978-47493997 Msa0644000:intron 15.0%
!! TGAAAATTCTTGAATATATT+TGG - chr4_3:47493978-47493997 Msa0644000:intron 15.0%
!! AATAAATAGGTATGCTTATA+AGG - chr4_3:47493244-47493263 Msa0644000:three_prime_UTR 20.0%
!! ATAAATAGGTATGCTTATAA+GGG - chr4_3:47493245-47493264 Msa0644000:three_prime_UTR 20.0%
!! ATGCTATATACATGTTAATT+AGG + chr4_3:47494627-47494646 None:intergenic 20.0%
!! AATAAATAGGTATGCTTATA+AGG - chr4_3:47493244-47493263 Msa0644000:three_prime_UTR 20.0%
!! ATAAATAGGTATGCTTATAA+GGG - chr4_3:47493245-47493264 Msa0644000:three_prime_UTR 20.0%
!! ATGCTATATACATGTTAATT+AGG + chr4_3:47494627-47494646 None:intergenic 20.0%
! AGAACAAGAAGATTACAAAT+TGG - chr4_3:47493141-47493160 Msa0644000:three_prime_UTR 25.0%
!! TACAAATTGGCATATTTTGT+AGG - chr4_3:47493154-47493173 Msa0644000:three_prime_UTR 25.0%
!! ACAAATTGGCATATTTTGTA+GGG - chr4_3:47493155-47493174 Msa0644000:three_prime_UTR 25.0%
! TGTATTTGGATATATGAAGT+AGG + chr4_3:47493527-47493546 None:intergenic 25.0%
! ACAATGAGATTAAGAATTAC+TGG - chr4_3:47494081-47494100 Msa0644000:intron 25.0%
! AAGTACAAGAAATTGAACAA+GGG - chr4_3:47494270-47494289 Msa0644000:intron 25.0%
! ATTCATATTTAGATCCATTG+TGG - chr4_3:47494435-47494454 Msa0644000:intron 25.0%
! TTCATATTTAGATCCATTGT+GGG - chr4_3:47494436-47494455 Msa0644000:intron 25.0%
! GATCATAGAAGGAAAAATAT+TGG + chr4_3:47494508-47494527 None:intergenic 25.0%
! ATAGTATATGTCTTTCTGAA+AGG - chr4_3:47494645-47494664 Msa0644000:CDS 25.0%
!! TAGTATATGTCTTTCTGAAA+GGG - chr4_3:47494646-47494665 Msa0644000:CDS 25.0%
! AGAACAAGAAGATTACAAAT+TGG - chr4_3:47493141-47493160 Msa0644000:three_prime_UTR 25.0%
!! TACAAATTGGCATATTTTGT+AGG - chr4_3:47493154-47493173 Msa0644000:three_prime_UTR 25.0%
!! ACAAATTGGCATATTTTGTA+GGG - chr4_3:47493155-47493174 Msa0644000:three_prime_UTR 25.0%
! TGTATTTGGATATATGAAGT+AGG + chr4_3:47493527-47493546 None:intergenic 25.0%
! ACAATGAGATTAAGAATTAC+TGG - chr4_3:47494081-47494100 Msa0644000:intron 25.0%
! AAGTACAAGAAATTGAACAA+GGG - chr4_3:47494270-47494289 Msa0644000:intron 25.0%
! ATTCATATTTAGATCCATTG+TGG - chr4_3:47494435-47494454 Msa0644000:intron 25.0%
! TTCATATTTAGATCCATTGT+GGG - chr4_3:47494436-47494455 Msa0644000:intron 25.0%
! GATCATAGAAGGAAAAATAT+TGG + chr4_3:47494508-47494527 None:intergenic 25.0%
! ATAGTATATGTCTTTCTGAA+AGG - chr4_3:47494645-47494664 Msa0644000:CDS 25.0%
!! TAGTATATGTCTTTCTGAAA+GGG - chr4_3:47494646-47494665 Msa0644000:CDS 25.0%
TCACAAGAAATAAGCAGAAA+AGG - chr4_3:47493109-47493128 Msa0644000:three_prime_UTR 30.0%
! GCATATTTTGTAGGGTTATT+TGG - chr4_3:47493163-47493182 Msa0644000:three_prime_UTR 30.0%
! TAGATGGGATTTTATAGCAA+AGG - chr4_3:47493192-47493211 Msa0644000:three_prime_UTR 30.0%
! GATTTTATAGCAAAGGTTTC+AGG - chr4_3:47493199-47493218 Msa0644000:three_prime_UTR 30.0%
AGCATTAATTCCTTTAACCA+TGG - chr4_3:47493287-47493306 Msa0644000:three_prime_UTR 30.0%
AACAGAAAAACCATGGTTAA+AGG + chr4_3:47493300-47493319 None:intergenic 30.0%
ATAACAAGTGTTTCTTCTTG+GGG + chr4_3:47493421-47493440 None:intergenic 30.0%
CATAACAAGTGTTTCTTCTT+GGG + chr4_3:47493422-47493441 None:intergenic 30.0%
TTATGGAACTTCACTCTAAA+TGG - chr4_3:47493437-47493456 Msa0644000:exon 30.0%
TATGGAACTTCACTCTAAAT+GGG - chr4_3:47493438-47493457 Msa0644000:exon 30.0%
TGATTGACATGAGATGTATT+TGG + chr4_3:47493541-47493560 None:intergenic 30.0%
AGAGTTACGATCAAAGAAAT+TGG - chr4_3:47493574-47493593 Msa0644000:CDS 30.0%
ACGATCAAAGAAATTGGATA+CGG - chr4_3:47493580-47493599 Msa0644000:CDS 30.0%
GATCTTCTATAGCTGTATTA+TGG + chr4_3:47493696-47493715 None:intergenic 30.0%
TCCTTGTCAAATATACGAAA+TGG - chr4_3:47493714-47493733 Msa0644000:CDS 30.0%
TCCATTTCGTATATTTGACA+AGG + chr4_3:47493718-47493737 None:intergenic 30.0%
ATGAGATTAAGAATTACTGG+AGG - chr4_3:47494084-47494103 Msa0644000:intron 30.0%
CTTGTTCAATTTCTTGTACT+TGG + chr4_3:47494271-47494290 None:intergenic 30.0%
CAAGTACAAGAAATTGAACA+AGG - chr4_3:47494269-47494288 Msa0644000:intron 30.0%
GAAAAATATTGGTCACCAAT+AGG + chr4_3:47494497-47494516 None:intergenic 30.0%
! TTTTCCTTCTATGATCAACA+AGG - chr4_3:47494512-47494531 Msa0644000:intron 30.0%
TTTCCTTCTATGATCAACAA+GGG - chr4_3:47494513-47494532 Msa0644000:intron 30.0%
!! TCTTCATCATCGATTTAGAT+CGG + chr4_3:47494716-47494735 None:intergenic 30.0%
ATTGTCCGATCTCAAATTAA+CGG - chr4_3:47494771-47494790 Msa0644000:intron 30.0%
TCACAAGAAATAAGCAGAAA+AGG - chr4_3:47493109-47493128 Msa0644000:three_prime_UTR 30.0%
! GCATATTTTGTAGGGTTATT+TGG - chr4_3:47493163-47493182 Msa0644000:three_prime_UTR 30.0%
! TAGATGGGATTTTATAGCAA+AGG - chr4_3:47493192-47493211 Msa0644000:three_prime_UTR 30.0%
! GATTTTATAGCAAAGGTTTC+AGG - chr4_3:47493199-47493218 Msa0644000:three_prime_UTR 30.0%
AGCATTAATTCCTTTAACCA+TGG - chr4_3:47493287-47493306 Msa0644000:three_prime_UTR 30.0%
AACAGAAAAACCATGGTTAA+AGG + chr4_3:47493300-47493319 None:intergenic 30.0%
ATAACAAGTGTTTCTTCTTG+GGG + chr4_3:47493421-47493440 None:intergenic 30.0%
CATAACAAGTGTTTCTTCTT+GGG + chr4_3:47493422-47493441 None:intergenic 30.0%
TTATGGAACTTCACTCTAAA+TGG - chr4_3:47493437-47493456 Msa0644000:exon 30.0%
TATGGAACTTCACTCTAAAT+GGG - chr4_3:47493438-47493457 Msa0644000:exon 30.0%
TGATTGACATGAGATGTATT+TGG + chr4_3:47493541-47493560 None:intergenic 30.0%
AGAGTTACGATCAAAGAAAT+TGG - chr4_3:47493574-47493593 Msa0644000:CDS 30.0%
ACGATCAAAGAAATTGGATA+CGG - chr4_3:47493580-47493599 Msa0644000:CDS 30.0%
GATCTTCTATAGCTGTATTA+TGG + chr4_3:47493696-47493715 None:intergenic 30.0%
TCCTTGTCAAATATACGAAA+TGG - chr4_3:47493714-47493733 Msa0644000:CDS 30.0%
TCCATTTCGTATATTTGACA+AGG + chr4_3:47493718-47493737 None:intergenic 30.0%
ATGAGATTAAGAATTACTGG+AGG - chr4_3:47494084-47494103 Msa0644000:intron 30.0%
CTTGTTCAATTTCTTGTACT+TGG + chr4_3:47494271-47494290 None:intergenic 30.0%
CAAGTACAAGAAATTGAACA+AGG - chr4_3:47494269-47494288 Msa0644000:intron 30.0%
GAAAAATATTGGTCACCAAT+AGG + chr4_3:47494497-47494516 None:intergenic 30.0%
! TTTTCCTTCTATGATCAACA+AGG - chr4_3:47494512-47494531 Msa0644000:intron 30.0%
TTTCCTTCTATGATCAACAA+GGG - chr4_3:47494513-47494532 Msa0644000:intron 30.0%
!! TCTTCATCATCGATTTAGAT+CGG + chr4_3:47494716-47494735 None:intergenic 30.0%
ATTGTCCGATCTCAAATTAA+CGG - chr4_3:47494771-47494790 Msa0644000:intron 30.0%
AAATAAGCAGAAAAGGTCCA+TGG - chr4_3:47493116-47493135 Msa0644000:three_prime_UTR 35.0%
TAATCTTCTTGTTCTGTCCA+TGG + chr4_3:47493136-47493155 None:intergenic 35.0%
! GTTATTTGGTGATCGTAGAT+GGG - chr4_3:47493177-47493196 Msa0644000:three_prime_UTR 35.0%
TGTGAGAAACAGAAAAACCA+TGG + chr4_3:47493307-47493326 None:intergenic 35.0%
! TGTTTCTCACACTTTGTTGT+AGG - chr4_3:47493316-47493335 Msa0644000:three_prime_UTR 35.0%
CCATAACAAGTGTTTCTTCT+TGG + chr4_3:47493423-47493442 None:intergenic 35.0%
! CCAAGAAGAAACACTTGTTA+TGG - chr4_3:47493420-47493439 Msa0644000:three_prime_UTR 35.0%
ATGGAACTTCACTCTAAATG+GGG - chr4_3:47493439-47493458 Msa0644000:exon 35.0%
TTCACTCTAAATGGGGAAAT+AGG - chr4_3:47493446-47493465 Msa0644000:exon 35.0%
GTAGGTAGTAGGAAAAGAAA+AGG + chr4_3:47493509-47493528 None:intergenic 35.0%
GGATATATGAAGTAGGTAGT+AGG + chr4_3:47493520-47493539 None:intergenic 35.0%
AATATGGTGCTCAAACAGTA+AGG - chr4_3:47493607-47493626 Msa0644000:CDS 35.0%
AAGGACTATTAGACTTTGAG+AGG + chr4_3:47493661-47493680 None:intergenic 35.0%
AGAATTGCTAGAAAACTACC+AGG - chr4_3:47494050-47494069 Msa0644000:intron 35.0%
GACACACATGAGAAAAAAGA+GGG - chr4_3:47494106-47494125 Msa0644000:intron 35.0%
TGTTTGAGAAATGTGAGGAT+TGG + chr4_3:47494193-47494212 None:intergenic 35.0%
GTTACTGTTTGAGAAATGTG+AGG + chr4_3:47494198-47494217 None:intergenic 35.0%
CATTTCTCAAACAGTAACCA+TGG - chr4_3:47494200-47494219 Msa0644000:intron 35.0%
TTCTTCTTCAGACTCTTTGT+TGG + chr4_3:47494243-47494262 None:intergenic 35.0%
!! AATTGAACAAGGGTACTCAA+TGG - chr4_3:47494280-47494299 Msa0644000:intron 35.0%
GGTACTCAATGGATGATATA+TGG - chr4_3:47494291-47494310 Msa0644000:intron 35.0%
!! GATGATGTAGAAGGCATTAT+AGG + chr4_3:47494407-47494426 None:intergenic 35.0%
TAATGCCTTCTACATCATCA+TGG - chr4_3:47494408-47494427 Msa0644000:intron 35.0%
AATGCCTTCTACATCATCAT+GGG - chr4_3:47494409-47494428 Msa0644000:intron 35.0%
! TAATCCCATGATGATGTAGA+AGG + chr4_3:47494416-47494435 None:intergenic 35.0%
AAGATGTTATTCCCTCCTAT+TGG - chr4_3:47494479-47494498 Msa0644000:intron 35.0%
AATATTGGTCACCAATAGGA+GGG + chr4_3:47494493-47494512 None:intergenic 35.0%
AAATATTGGTCACCAATAGG+AGG + chr4_3:47494494-47494513 None:intergenic 35.0%
TTAGGCTATCTTATGACAGA+TGG + chr4_3:47494609-47494628 None:intergenic 35.0%
TACGTGTTTCTCTTTAAGCA+TGG - chr4_3:47494818-47494837 Msa0644000:CDS 35.0%
AAATAAGCAGAAAAGGTCCA+TGG - chr4_3:47493116-47493135 Msa0644000:three_prime_UTR 35.0%
TAATCTTCTTGTTCTGTCCA+TGG + chr4_3:47493136-47493155 None:intergenic 35.0%
! GTTATTTGGTGATCGTAGAT+GGG - chr4_3:47493177-47493196 Msa0644000:three_prime_UTR 35.0%
TGTGAGAAACAGAAAAACCA+TGG + chr4_3:47493307-47493326 None:intergenic 35.0%
! TGTTTCTCACACTTTGTTGT+AGG - chr4_3:47493316-47493335 Msa0644000:three_prime_UTR 35.0%
CCATAACAAGTGTTTCTTCT+TGG + chr4_3:47493423-47493442 None:intergenic 35.0%
! CCAAGAAGAAACACTTGTTA+TGG - chr4_3:47493420-47493439 Msa0644000:three_prime_UTR 35.0%
ATGGAACTTCACTCTAAATG+GGG - chr4_3:47493439-47493458 Msa0644000:exon 35.0%
TTCACTCTAAATGGGGAAAT+AGG - chr4_3:47493446-47493465 Msa0644000:exon 35.0%
GTAGGTAGTAGGAAAAGAAA+AGG + chr4_3:47493509-47493528 None:intergenic 35.0%
GGATATATGAAGTAGGTAGT+AGG + chr4_3:47493520-47493539 None:intergenic 35.0%
AATATGGTGCTCAAACAGTA+AGG - chr4_3:47493607-47493626 Msa0644000:CDS 35.0%
AAGGACTATTAGACTTTGAG+AGG + chr4_3:47493661-47493680 None:intergenic 35.0%
AGAATTGCTAGAAAACTACC+AGG - chr4_3:47494050-47494069 Msa0644000:intron 35.0%
GACACACATGAGAAAAAAGA+GGG - chr4_3:47494106-47494125 Msa0644000:intron 35.0%
TGTTTGAGAAATGTGAGGAT+TGG + chr4_3:47494193-47494212 None:intergenic 35.0%
GTTACTGTTTGAGAAATGTG+AGG + chr4_3:47494198-47494217 None:intergenic 35.0%
CATTTCTCAAACAGTAACCA+TGG - chr4_3:47494200-47494219 Msa0644000:intron 35.0%
TTCTTCTTCAGACTCTTTGT+TGG + chr4_3:47494243-47494262 None:intergenic 35.0%
!! AATTGAACAAGGGTACTCAA+TGG - chr4_3:47494280-47494299 Msa0644000:intron 35.0%
GGTACTCAATGGATGATATA+TGG - chr4_3:47494291-47494310 Msa0644000:intron 35.0%
!! GATGATGTAGAAGGCATTAT+AGG + chr4_3:47494407-47494426 None:intergenic 35.0%
TAATGCCTTCTACATCATCA+TGG - chr4_3:47494408-47494427 Msa0644000:intron 35.0%
AATGCCTTCTACATCATCAT+GGG - chr4_3:47494409-47494428 Msa0644000:intron 35.0%
! TAATCCCATGATGATGTAGA+AGG + chr4_3:47494416-47494435 None:intergenic 35.0%
AAGATGTTATTCCCTCCTAT+TGG - chr4_3:47494479-47494498 Msa0644000:intron 35.0%
AATATTGGTCACCAATAGGA+GGG + chr4_3:47494493-47494512 None:intergenic 35.0%
AAATATTGGTCACCAATAGG+AGG + chr4_3:47494494-47494513 None:intergenic 35.0%
TTAGGCTATCTTATGACAGA+TGG + chr4_3:47494609-47494628 None:intergenic 35.0%
TACGTGTTTCTCTTTAAGCA+TGG - chr4_3:47494818-47494837 Msa0644000:CDS 35.0%
! GGTTATTTGGTGATCGTAGA+TGG - chr4_3:47493176-47493195 Msa0644000:three_prime_UTR 40.0%
!! AGCAAAGGTTTCAGGTTTGA+AGG - chr4_3:47493207-47493226 Msa0644000:three_prime_UTR 40.0%
!! AAAGGTTTCAGGTTTGAAGG+TGG - chr4_3:47493210-47493229 Msa0644000:three_prime_UTR 40.0%
GTTGTAGGTTTGAGTAGATC+AGG - chr4_3:47493331-47493350 Msa0644000:three_prime_UTR 40.0%
TAAGAGTTGCAGGTTACGTT+GGG - chr4_3:47493354-47493373 Msa0644000:three_prime_UTR 40.0%
AATTGGATACGGCTGCAATA+TGG - chr4_3:47493591-47493610 Msa0644000:CDS 40.0%
!! ATTATGGTGCTGCAACTGTA+AGG + chr4_3:47493680-47493699 None:intergenic 40.0%
ATTCAAGTCCTCGCTCAAAA+GGG - chr4_3:47493844-47493863 Msa0644000:CDS 40.0%
CGCGGAGACATAAAAAATTG+TGG - chr4_3:47493909-47493928 Msa0644000:CDS 40.0%
CTATGTGTGATGATTGCAGA+TGG - chr4_3:47494024-47494043 Msa0644000:intron 40.0%
ATCTCATTGTCTGTTCTTCC+TGG + chr4_3:47494071-47494090 None:intergenic 40.0%
GGACACACATGAGAAAAAAG+AGG - chr4_3:47494105-47494124 Msa0644000:intron 40.0%
TGGCAACTAGAAGATTGATC+AGG + chr4_3:47494173-47494192 None:intergenic 40.0%
GTTCTTCAACCTGTTCTTGA+TGG - chr4_3:47494347-47494366 Msa0644000:intron 40.0%
TCACTAGTTCCATCAAGAAC+AGG + chr4_3:47494359-47494378 None:intergenic 40.0%
TTTAGATCCATTGTGGGTGA+TGG - chr4_3:47494442-47494461 Msa0644000:intron 40.0%
GTTCCCTTGTTGATCATAGA+AGG + chr4_3:47494519-47494538 None:intergenic 40.0%
CAAGGGAACACATTTCTAAC+TGG - chr4_3:47494530-47494549 Msa0644000:intron 40.0%
!! CATCATCGATTTAGATCGGA+CGG + chr4_3:47494712-47494731 None:intergenic 40.0%
! CTCGACCGTTAATTTGAGAT+CGG + chr4_3:47494779-47494798 None:intergenic 40.0%
! GGTTATTTGGTGATCGTAGA+TGG - chr4_3:47493176-47493195 Msa0644000:three_prime_UTR 40.0%
!! AGCAAAGGTTTCAGGTTTGA+AGG - chr4_3:47493207-47493226 Msa0644000:three_prime_UTR 40.0%
!! AAAGGTTTCAGGTTTGAAGG+TGG - chr4_3:47493210-47493229 Msa0644000:three_prime_UTR 40.0%
GTTGTAGGTTTGAGTAGATC+AGG - chr4_3:47493331-47493350 Msa0644000:three_prime_UTR 40.0%
TAAGAGTTGCAGGTTACGTT+GGG - chr4_3:47493354-47493373 Msa0644000:three_prime_UTR 40.0%
AATTGGATACGGCTGCAATA+TGG - chr4_3:47493591-47493610 Msa0644000:CDS 40.0%
!! ATTATGGTGCTGCAACTGTA+AGG + chr4_3:47493680-47493699 None:intergenic 40.0%
ATTCAAGTCCTCGCTCAAAA+GGG - chr4_3:47493844-47493863 Msa0644000:CDS 40.0%
CGCGGAGACATAAAAAATTG+TGG - chr4_3:47493909-47493928 Msa0644000:CDS 40.0%
CTATGTGTGATGATTGCAGA+TGG - chr4_3:47494024-47494043 Msa0644000:intron 40.0%
ATCTCATTGTCTGTTCTTCC+TGG + chr4_3:47494071-47494090 None:intergenic 40.0%
GGACACACATGAGAAAAAAG+AGG - chr4_3:47494105-47494124 Msa0644000:intron 40.0%
TGGCAACTAGAAGATTGATC+AGG + chr4_3:47494173-47494192 None:intergenic 40.0%
GTTCTTCAACCTGTTCTTGA+TGG - chr4_3:47494347-47494366 Msa0644000:intron 40.0%
TCACTAGTTCCATCAAGAAC+AGG + chr4_3:47494359-47494378 None:intergenic 40.0%
TTTAGATCCATTGTGGGTGA+TGG - chr4_3:47494442-47494461 Msa0644000:intron 40.0%
GTTCCCTTGTTGATCATAGA+AGG + chr4_3:47494519-47494538 None:intergenic 40.0%
CAAGGGAACACATTTCTAAC+TGG - chr4_3:47494530-47494549 Msa0644000:intron 40.0%
!! CATCATCGATTTAGATCGGA+CGG + chr4_3:47494712-47494731 None:intergenic 40.0%
! CTCGACCGTTAATTTGAGAT+CGG + chr4_3:47494779-47494798 None:intergenic 40.0%
GGCGGGAGAGAGTAATAAAT+AGG - chr4_3:47493231-47493250 Msa0644000:three_prime_UTR 45.0%
GTAGATCAGGTAAGAGTTGC+AGG - chr4_3:47493344-47493363 Msa0644000:three_prime_UTR 45.0%
GTAAGAGTTGCAGGTTACGT+TGG - chr4_3:47493353-47493372 Msa0644000:three_prime_UTR 45.0%
TGGTGCTCAAACAGTAAGGA+CGG - chr4_3:47493611-47493630 Msa0644000:CDS 45.0%
GATTCAAGTCCTCGCTCAAA+AGG - chr4_3:47493843-47493862 Msa0644000:CDS 45.0%
TTCAAGTCCTCGCTCAAAAG+GGG - chr4_3:47493845-47493864 Msa0644000:CDS 45.0%
! CATGAGAAAAAAGAGGGCAC+AGG - chr4_3:47494112-47494131 Msa0644000:intron 45.0%
TCAGGTGACGATGAAATCGA+AGG + chr4_3:47494155-47494174 None:intergenic 45.0%
CTCAAACAGTAACCATGGTG+TGG - chr4_3:47494205-47494224 Msa0644000:intron 45.0%
AAGCATGTGAATCCACACCA+TGG + chr4_3:47494220-47494239 None:intergenic 45.0%
TCTTCATCCATCACCCACAA+TGG + chr4_3:47494452-47494471 None:intergenic 45.0%
CGGTCAAGACTGAAAAACTG+CGG + chr4_3:47494692-47494711 None:intergenic 45.0%
CGATCTCAAATTAACGGTCG+AGG - chr4_3:47494777-47494796 Msa0644000:intron 45.0%
GGCGGGAGAGAGTAATAAAT+AGG - chr4_3:47493231-47493250 Msa0644000:three_prime_UTR 45.0%
GTAGATCAGGTAAGAGTTGC+AGG - chr4_3:47493344-47493363 Msa0644000:three_prime_UTR 45.0%
GTAAGAGTTGCAGGTTACGT+TGG - chr4_3:47493353-47493372 Msa0644000:three_prime_UTR 45.0%
TGGTGCTCAAACAGTAAGGA+CGG - chr4_3:47493611-47493630 Msa0644000:CDS 45.0%
GATTCAAGTCCTCGCTCAAA+AGG - chr4_3:47493843-47493862 Msa0644000:CDS 45.0%
TTCAAGTCCTCGCTCAAAAG+GGG - chr4_3:47493845-47493864 Msa0644000:CDS 45.0%
! CATGAGAAAAAAGAGGGCAC+AGG - chr4_3:47494112-47494131 Msa0644000:intron 45.0%
TCAGGTGACGATGAAATCGA+AGG + chr4_3:47494155-47494174 None:intergenic 45.0%
CTCAAACAGTAACCATGGTG+TGG - chr4_3:47494205-47494224 Msa0644000:intron 45.0%
AAGCATGTGAATCCACACCA+TGG + chr4_3:47494220-47494239 None:intergenic 45.0%
TCTTCATCCATCACCCACAA+TGG + chr4_3:47494452-47494471 None:intergenic 45.0%
CGGTCAAGACTGAAAAACTG+CGG + chr4_3:47494692-47494711 None:intergenic 45.0%
CGATCTCAAATTAACGGTCG+AGG - chr4_3:47494777-47494796 Msa0644000:intron 45.0%
!! GGTTTCAGGTTTGAAGGTGG+CGG - chr4_3:47493213-47493232 Msa0644000:three_prime_UTR 50.0%
!! GTTTCAGGTTTGAAGGTGGC+GGG - chr4_3:47493214-47493233 Msa0644000:three_prime_UTR 50.0%
CTTCACCCTGATCTCAAACG+CGG - chr4_3:47493385-47493404 Msa0644000:three_prime_UTR 50.0%
! TCTTGCCGCGTTTGAGATCA+GGG + chr4_3:47493393-47493412 None:intergenic 50.0%
! ATCTTGCCGCGTTTGAGATC+AGG + chr4_3:47493394-47493413 None:intergenic 50.0%
ATTGCAGTACAGTGCTGCAG+CGG - chr4_3:47493748-47493767 Msa0644000:CDS 50.0%
ACTTGAATCCTCTACGGCAG+CGG + chr4_3:47493832-47493851 None:intergenic 50.0%
GCGAGGACTTGAATCCTCTA+CGG + chr4_3:47493838-47493857 None:intergenic 50.0%
TGATGACCGTGATTGTGCTG+TGG - chr4_3:47493877-47493896 Msa0644000:CDS 50.0%
TTTATGTCTCCGCGACTCCA+AGG + chr4_3:47493903-47493922 None:intergenic 50.0%
!! GGTTTCAGGTTTGAAGGTGG+CGG - chr4_3:47493213-47493232 Msa0644000:three_prime_UTR 50.0%
!! GTTTCAGGTTTGAAGGTGGC+GGG - chr4_3:47493214-47493233 Msa0644000:three_prime_UTR 50.0%
CTTCACCCTGATCTCAAACG+CGG - chr4_3:47493385-47493404 Msa0644000:three_prime_UTR 50.0%
! TCTTGCCGCGTTTGAGATCA+GGG + chr4_3:47493393-47493412 None:intergenic 50.0%
! ATCTTGCCGCGTTTGAGATC+AGG + chr4_3:47493394-47493413 None:intergenic 50.0%
ATTGCAGTACAGTGCTGCAG+CGG - chr4_3:47493748-47493767 Msa0644000:CDS 50.0%
ACTTGAATCCTCTACGGCAG+CGG + chr4_3:47493832-47493851 None:intergenic 50.0%
GCGAGGACTTGAATCCTCTA+CGG + chr4_3:47493838-47493857 None:intergenic 50.0%
TGATGACCGTGATTGTGCTG+TGG - chr4_3:47493877-47493896 Msa0644000:CDS 50.0%
TTTATGTCTCCGCGACTCCA+AGG + chr4_3:47493903-47493922 None:intergenic 50.0%
! GCATAAGCCCCTTTTGAGCG+AGG + chr4_3:47493855-47493874 None:intergenic 55.0%
CCAAGGCCACAGCACAATCA+CGG + chr4_3:47493886-47493905 None:intergenic 55.0%
! GCATAAGCCCCTTTTGAGCG+AGG + chr4_3:47493855-47493874 None:intergenic 55.0%
CCAAGGCCACAGCACAATCA+CGG + chr4_3:47493886-47493905 None:intergenic 55.0%
CTCTACTACCGCTGCCGTAG+AGG - chr4_3:47493821-47493840 Msa0644000:CDS 60.0%
CCGTGATTGTGCTGTGGCCT+TGG - chr4_3:47493883-47493902 Msa0644000:CDS 60.0%
CTCTACTACCGCTGCCGTAG+AGG - chr4_3:47493821-47493840 Msa0644000:CDS 60.0%
CCGTGATTGTGCTGTGGCCT+TGG - chr4_3:47493883-47493902 Msa0644000:CDS 60.0%
! GTGCTGTGGCCTTGGAGTCG+CGG - chr4_3:47493891-47493910 Msa0644000:CDS 65.0%
! GTGCTGTGGCCTTGGAGTCG+CGG - chr4_3:47493891-47493910 Msa0644000:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 47493103 47494906 47493103 ID=Msa0644000;Name=Msa0644000
chr4_3 mRNA 47493103 47494906 47493103 ID=Msa0644000-mRNA-1;Parent=Msa0644000;Name=Msa0644000-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0.5|0.66|1|1|1|3|350|253
chr4_3 exon 47493103 47493966 47493103 ID=Msa0644000-mRNA-1:exon:11276;Parent=Msa0644000-mRNA-1
chr4_3 exon 47494542 47494671 47494542 ID=Msa0644000-mRNA-1:exon:11275;Parent=Msa0644000-mRNA-1
chr4_3 exon 47494789 47494906 47494789 ID=Msa0644000-mRNA-1:exon:11274;Parent=Msa0644000-mRNA-1
chr4_3 CDS 47494789 47494906 47494789 ID=Msa0644000-mRNA-1:cds;Parent=Msa0644000-mRNA-1
chr4_3 CDS 47494542 47494671 47494542 ID=Msa0644000-mRNA-1:cds;Parent=Msa0644000-mRNA-1
chr4_3 CDS 47493453 47493966 47493453 ID=Msa0644000-mRNA-1:cds;Parent=Msa0644000-mRNA-1
chr4_3 three_prime_UTR 47493103 47493452 47493103 ID=Msa0644000-mRNA-1:three_prime_utr;Parent=Msa0644000-mRNA-1
Gene Sequence

>Msa0644000

ATGGTTTCACAAGAAATAAGCAGAAAAGGTCCATGGACAGAACAAGAAGATTACAAATTGGCATATTTTGTAGGGTTATTTGGTGATCGTAGATGGGATTTTATAGCAAAGGTTTCAGGTTTGAGTAGATCAGGTAAGAGTTGCAGGTTACGTTGGGTTAATTATCTTCACCCTGATCTCAAACGCGGCAAGATGACACCCCAAGAAGAAACACTTGTTATGGAACTTCACTCTAAATGGGGAAATAGATGGTCAAGAATTGCTAGAAAACTACCAGGAAGAACAGACAATGAGATTAAGAATTACTGGAGGACACACATGAGAAAAAAGAGGGCACAGGAGAAAAAACATGCAACACCTTCGATTTCATCGTCACCTGATCAATCTTCTAGTTGCCAATCCTCACATTTCTCAAACAGTAACCATGGTGTGGATTCACATGCTTCCAACAAAGAGTCTGAAGAAGAAAATTACCAAGTACAAGAAATTGAACAAGGGTACTCAATGGATGATATATGGAAAGATATTGCTATGTCTGAAGATGACATCAATGTTCTTCAACCTGTTCTTGATGGAACTAGTGAAGAGAATAGTAATAATTTATCTTGTCCTATAATGCCTTCTACATCATCATGGGATTATTCATATTTAGATCCATTGTGGGTGATGGATGAAGAAGAAAGCAAGATGTTATTCCCTCCTATTGGTGACCAATATTTTTCCTTCTATGATCAACAAGGGAACACATTTCTAACTGGTTAA
Protein sequence

>Msa0644000

MVSQEISRKGPWTEQEDYKLAYFVGLFGDRRWDFIAKVSGLSRSGKSCRLRWVNYLHPDLKRGKMTPQEETLVMELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKKRAQEKKHATPSISSSPDQSSSCQSSHFSNSNHGVDSHASNKESEEENYQVQEIEQGYSMDDIWKDIAMSEDDINVLQPVLDGTSEENSNNLSCPIMPSTSSWDYSYLDPLWVMDEEESKMLFPPIGDQYFSFYDQQGNTFLTG*