Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644940 | XP_013456175.1 | 88.276 | 145 | 14 | 1 | 1 | 142 | 1 | 145 | 1.43e-84 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644940 | sp|P04793|HSP13_SOYBN | 38.889 | 144 | 59 | 4 | 19 | 141 | 14 | 149 | 3.08e-27 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644940 | A0A072ULC9 | 88.276 | 145 | 14 | 1 | 1 | 142 | 1 | 145 | 6.84e-85 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0574590 | Msa0644940 | 0.812105 | 5.013077e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644940 | MtrunA17_Chr4g0032341 | 57.303 | 178 | 20 | 2 | 1 | 175 | 1 | 125 | 7.16e-61 | 184 |
| Msa0644940 | MtrunA17_Chr4g0048601 | 38.194 | 144 | 66 | 4 | 19 | 141 | 14 | 155 | 1.03e-26 | 99.0 |
| Msa0644940 | MtrunA17_Chr4g0046751 | 37.654 | 162 | 75 | 5 | 1 | 141 | 1 | 157 | 3.62e-26 | 97.8 |
| Msa0644940 | MtrunA17_Chr4g0046821 | 39.333 | 150 | 66 | 4 | 1 | 129 | 1 | 146 | 4.54e-26 | 97.4 |
| Msa0644940 | MtrunA17_Chr6g0475941 | 38.667 | 150 | 65 | 5 | 1 | 129 | 1 | 144 | 5.99e-24 | 92.0 |
| Msa0644940 | MtrunA17_Chr6g0475981 | 36.111 | 144 | 69 | 4 | 19 | 141 | 14 | 155 | 4.50e-23 | 89.7 |
| Msa0644940 | MtrunA17_Chr4g0046791 | 37.654 | 162 | 72 | 7 | 1 | 141 | 1 | 154 | 9.00e-23 | 89.0 |
| Msa0644940 | MtrunA17_Chr5g0426271 | 36.842 | 152 | 60 | 5 | 1 | 131 | 1 | 137 | 2.84e-18 | 77.0 |
| Msa0644940 | MtrunA17_Chr5g0436181 | 35.570 | 149 | 60 | 6 | 1 | 128 | 1 | 134 | 1.14e-16 | 72.8 |
| Msa0644940 | MtrunA17_Chr4g0046741 | 37.500 | 112 | 47 | 3 | 41 | 129 | 14 | 125 | 6.50e-15 | 68.2 |
| Msa0644940 | MtrunA17_Chr6g0458261 | 36.735 | 98 | 38 | 2 | 56 | 129 | 26 | 123 | 3.71e-13 | 63.5 |
| Msa0644940 | MtrunA17_Chr7g0240871 | 30.556 | 108 | 53 | 3 | 56 | 142 | 57 | 163 | 2.85e-11 | 58.9 |
| Msa0644940 | MtrunA17_Chr1g0188321 | 32.292 | 96 | 44 | 2 | 58 | 132 | 75 | 170 | 9.05e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0644940 | AT1G07400.1 | 35.714 | 154 | 66 | 6 | 1 | 132 | 1 | 143 | 1.98e-22 | 88.6 |
| Msa0644940 | AT1G53540.1 | 37.037 | 135 | 61 | 4 | 19 | 132 | 14 | 145 | 1.16e-20 | 84.0 |
| Msa0644940 | AT3G46230.1 | 40.000 | 135 | 56 | 4 | 19 | 132 | 14 | 144 | 7.31e-19 | 79.0 |
| Msa0644940 | AT1G59860.1 | 33.333 | 132 | 57 | 3 | 21 | 131 | 19 | 140 | 1.36e-17 | 75.9 |
| Msa0644940 | AT5G59720.1 | 37.879 | 132 | 60 | 3 | 19 | 129 | 14 | 144 | 2.64e-17 | 75.1 |
| Msa0644940 | AT2G29500.1 | 32.237 | 152 | 70 | 5 | 1 | 131 | 1 | 140 | 7.89e-14 | 65.9 |
| Msa0644940 | AT2G19310.1 | 33.094 | 139 | 78 | 5 | 1 | 129 | 1 | 134 | 1.27e-13 | 65.5 |
Find 70 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGACAATTGTTGAATCTT+AGG | 0.231998 | 4_3:+49298728 | None:intergenic |
| GATTTGTATCCCATAGGTTT+AGG | 0.266894 | 4_3:+49299068 | None:intergenic |
| CCAATCCATGCGGGTGTTTA+GGG | 0.267015 | 4_3:+49298955 | None:intergenic |
| ACCAATTTCTTCCCTGAATT+CGG | 0.269683 | 4_3:-49298989 | Msa0644940:CDS |
| TCCAATCCATGCGGGTGTTT+AGG | 0.283004 | 4_3:+49298954 | None:intergenic |
| GTTCTGATGGGAGGAACATT+AGG | 0.285244 | 4_3:-49298706 | Msa0644940:CDS |
| GATGATCCGAAGCCGAATTC+AGG | 0.287326 | 4_3:+49298977 | None:intergenic |
| TCAAGAGCTTAAAGCGAATA+TGG | 0.289713 | 4_3:-49298777 | Msa0644940:CDS |
| ATACAAATCCCCTATCTCTA+TGG | 0.298703 | 4_3:-49299054 | Msa0644940:CDS |
| GTTGTCTTGGCCTTCGTTGA+TGG | 0.307026 | 4_3:+49299105 | None:intergenic |
| GTGTGGAAGGTGGTGGTTCC+TGG | 0.310043 | 4_3:-49298911 | Msa0644940:intron |
| ATCTCTATGGGATCCTTTCA+TGG | 0.312193 | 4_3:-49299041 | Msa0644940:CDS |
| ATTTGTATCCCATAGGTTTA+GGG | 0.338346 | 4_3:+49299069 | None:intergenic |
| CTTAAAGCGAATATGGTTAA+TGG | 0.339211 | 4_3:-49298770 | Msa0644940:CDS |
| TTCTTCCCTGAATTCGGCTT+CGG | 0.357989 | 4_3:-49298983 | Msa0644940:CDS |
| TCAAGATGAGAGAATGCTTC+AGG | 0.378264 | 4_3:-49298858 | Msa0644940:CDS |
| GCCGAATTCAGGGAAGAAAT+TGG | 0.378382 | 4_3:+49298988 | None:intergenic |
| TGAAAGGATCCCATAGAGAT+AGG | 0.379343 | 4_3:+49299044 | None:intergenic |
| TCGCCACCTTGGAGTTTGCC+AGG | 0.381578 | 4_3:+49297686 | Msa0644930:CDS |
| TTCTGATGGGAGGAACATTA+GGG | 0.401668 | 4_3:-49298705 | Msa0644940:intron |
| TATTCGCTTTAAGCTCTTGA+AGG | 0.409584 | 4_3:+49298780 | None:intergenic |
| CCTAAGATTCAACAATTGTC+TGG | 0.411185 | 4_3:-49298728 | Msa0644940:CDS |
| AAGAAATTGGTGATGGGTGA+AGG | 0.419600 | 4_3:+49299001 | None:intergenic |
| TGGGTGAAGGGAGTGGGAAG+TGG | 0.430796 | 4_3:+49299014 | None:intergenic |
| CCCTAAACACCCGCATGGAT+TGG | 0.433653 | 4_3:-49298955 | Msa0644940:CDS |
| TTGTCTTGGCCTTCGTTGAT+GGG | 0.437804 | 4_3:+49299106 | None:intergenic |
| CTTGGAGTTTGCCAGGGCGT+TGG | 0.438696 | 4_3:+49297693 | Msa0644930:CDS |
| CCAACACATCCCTAAACCTA+TGG | 0.445453 | 4_3:-49299078 | Msa0644940:CDS |
| CAACAATTGTCTGGTTCTGA+TGG | 0.450984 | 4_3:-49298719 | Msa0644940:CDS |
| ATGTGTTGGATCTGTTGTCT+TGG | 0.464158 | 4_3:+49299092 | None:intergenic |
| TCTTGAAGGTTACCATCATC+AGG | 0.464426 | 4_3:+49298794 | None:intergenic |
| CACCTTTGCAGTCGCCACCT+TGG | 0.476573 | 4_3:+49297675 | Msa0644930:intron |
| TGGTGATGGGTGAAGGGAGT+GGG | 0.500835 | 4_3:+49299008 | None:intergenic |
| GAAAGGATCCCATAGAGATA+GGG | 0.501645 | 4_3:+49299045 | None:intergenic |
| CCATAGGTTTAGGGATGTGT+TGG | 0.503155 | 4_3:+49299078 | None:intergenic |
| TTGGTGATGGGTGAAGGGAG+TGG | 0.503304 | 4_3:+49299007 | None:intergenic |
| AAGGTTGGAGGACTGTCAGC+TGG | 0.507584 | 4_3:-49297722 | Msa0644940:CDS |
| GCTGGAGCATGCCAACGCCC+TGG | 0.509385 | 4_3:-49297704 | Msa0644940:CDS |
| AGGTTTAAGATTCCTGATGA+TGG | 0.519283 | 4_3:-49298806 | Msa0644940:CDS |
| CGCCACCTTGGAGTTTGCCA+GGG | 0.519297 | 4_3:+49297687 | Msa0644930:CDS |
| AGAAATTGGTGATGGGTGAA+GGG | 0.519719 | 4_3:+49299002 | None:intergenic |
| ACCTTCCACACATGAGCTCT+CGG | 0.522132 | 4_3:+49298923 | None:intergenic |
| AGAGTGGTAATTTCATGAGT+AGG | 0.522283 | 4_3:-49298826 | Msa0644940:CDS |
| TACAAATCCCCTATCTCTAT+GGG | 0.528223 | 4_3:-49299053 | Msa0644940:CDS |
| ATGATCCGAAGCCGAATTCA+GGG | 0.532972 | 4_3:+49298978 | None:intergenic |
| TTCAGGGAAGAAATTGGTGA+TGG | 0.547224 | 4_3:+49298994 | None:intergenic |
| CAAGGTGGCGACTGCAAAGG+TGG | 0.548095 | 4_3:-49297674 | Msa0644940:CDS |
| AACAATTGTCTGGTTCTGAT+GGG | 0.556420 | 4_3:-49298718 | Msa0644940:CDS |
| ACATCTTCGTTTGTGTAACC+AGG | 0.571215 | 4_3:+49298893 | None:intergenic |
| TCAGGGAAGAAATTGGTGAT+GGG | 0.571363 | 4_3:+49298995 | None:intergenic |
| CAACACATCCCTAAACCTAT+GGG | 0.580450 | 4_3:-49299077 | Msa0644940:CDS |
| CAACGCCCTGGCAAACTCCA+AGG | 0.581632 | 4_3:-49297692 | Msa0644940:CDS |
| GTGGCGACTGCAAAGGTGGA+AGG | 0.586908 | 4_3:-49297670 | Msa0644940:CDS |
| ATAGGGGATTTGTATCCCAT+AGG | 0.587653 | 4_3:+49299062 | None:intergenic |
| TCTCATTCTTACCAAGGGTA+GGG | 0.595911 | 4_3:-49297644 | None:intergenic |
| AAAGGATCCCATAGAGATAG+GGG | 0.597206 | 4_3:+49299046 | None:intergenic |
| TGTCGATCTCCAATCCATGC+GGG | 0.602057 | 4_3:+49298946 | None:intergenic |
| ATCATCCCTAAACACCCGCA+TGG | 0.607075 | 4_3:-49298960 | Msa0644940:CDS |
| GCGACTGCAAAGGTGGAAGG+TGG | 0.607716 | 4_3:-49297667 | Msa0644940:CDS |
| CTCCAAGGTGGCGACTGCAA+AGG | 0.609331 | 4_3:-49297677 | Msa0644940:CDS |
| GTCTCATTCTTACCAAGGGT+AGG | 0.624739 | 4_3:-49297645 | None:intergenic |
| CTTCAGGTTAGTGTTGAGAG+TGG | 0.625150 | 4_3:-49298842 | Msa0644940:CDS |
| AGGTGGTCTCATTCTTACCA+AGG | 0.631866 | 4_3:-49297650 | Msa0644940:CDS |
| GGGAAGTGGAAATCCATGAA+AGG | 0.635753 | 4_3:+49299028 | None:intergenic |
| GGTGGTCTCATTCTTACCAA+GGG | 0.647652 | 4_3:-49297649 | Msa0644940:CDS |
| AATTGTCTGGTTCTGATGGG+AGG | 0.651723 | 4_3:-49298715 | Msa0644940:CDS |
| GTGTCGATCTCCAATCCATG+CGG | 0.671388 | 4_3:+49298945 | None:intergenic |
| TTACACAAACGAAGATGTGT+TGG | 0.672193 | 4_3:-49298888 | Msa0644940:CDS |
| TCGATAATACCCATCAACGA+AGG | 0.678493 | 4_3:-49299115 | Msa0644940:CDS |
| CGCCCTGGCAAACTCCAAGG+TGG | 0.688081 | 4_3:-49297689 | Msa0644940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAACAAATTATATTAGA+TGG | - | chr4_3:49298423-49298442 | Msa0644940:intron | 15.0% |
| !!! | TGAAAATCCATTTTTTTTTT+AGG | - | chr4_3:49298961-49298980 | Msa0644940:CDS | 15.0% |
| !!! | GAAAATCCATTTTTTTTTTA+GGG | - | chr4_3:49298962-49298981 | Msa0644940:CDS | 15.0% |
| !! | ATCTAACAAATTATATTAGA+TGG | - | chr4_3:49298423-49298442 | Msa0644940:intron | 15.0% |
| !!! | TGAAAATCCATTTTTTTTTT+AGG | - | chr4_3:49298961-49298980 | Msa0644940:CDS | 15.0% |
| !!! | GAAAATCCATTTTTTTTTTA+GGG | - | chr4_3:49298962-49298981 | Msa0644940:CDS | 15.0% |
| !!! | GATTTTCAATTACTTGTAAA+TGG | + | chr4_3:49298949-49298968 | None:intergenic | 20.0% |
| !! | TACTTTCCCTAAAAAAAAAA+TGG | + | chr4_3:49298971-49298990 | None:intergenic | 20.0% |
| !!! | ATTAAAATTATGCTTGCTAA+TGG | + | chr4_3:49299003-49299022 | None:intergenic | 20.0% |
| !!! | TAGCAAGCATAATTTTAATT+TGG | - | chr4_3:49299004-49299023 | Msa0644940:CDS | 20.0% |
| !!! | AGCAAGCATAATTTTAATTT+GGG | - | chr4_3:49299005-49299024 | Msa0644940:CDS | 20.0% |
| !!! | GATTTTCAATTACTTGTAAA+TGG | + | chr4_3:49298949-49298968 | None:intergenic | 20.0% |
| !! | TACTTTCCCTAAAAAAAAAA+TGG | + | chr4_3:49298971-49298990 | None:intergenic | 20.0% |
| !!! | ATTAAAATTATGCTTGCTAA+TGG | + | chr4_3:49299003-49299022 | None:intergenic | 20.0% |
| !!! | TAGCAAGCATAATTTTAATT+TGG | - | chr4_3:49299004-49299023 | Msa0644940:CDS | 20.0% |
| !!! | AGCAAGCATAATTTTAATTT+GGG | - | chr4_3:49299005-49299024 | Msa0644940:CDS | 20.0% |
| !! | TTTGAAACAGACACAATTTA+AGG | + | chr4_3:49298134-49298153 | None:intergenic | 25.0% |
| ! | TGATAAAGTCCTTTACAAAT+AGG | + | chr4_3:49298792-49298811 | None:intergenic | 25.0% |
| ! | TTCAATTACTTGTAAATGGA+AGG | + | chr4_3:49298945-49298964 | None:intergenic | 25.0% |
| !! | TTTGAAACAGACACAATTTA+AGG | + | chr4_3:49298134-49298153 | None:intergenic | 25.0% |
| ! | TGATAAAGTCCTTTACAAAT+AGG | + | chr4_3:49298792-49298811 | None:intergenic | 25.0% |
| ! | TTCAATTACTTGTAAATGGA+AGG | + | chr4_3:49298945-49298964 | None:intergenic | 25.0% |
| ATTTGTATCCCATAGGTTTA+GGG | + | chr4_3:49297698-49297717 | Msa0644930:CDS | 30.0% | |
| CTTAAAGCGAATATGGTTAA+TGG | - | chr4_3:49297994-49298013 | Msa0644940:intron | 30.0% | |
| ATTAGGGTTGTTGAAATTGA+AGG | - | chr4_3:49298075-49298094 | Msa0644940:intron | 30.0% | |
| ACACTTAACATATAGAAGCA+TGG | + | chr4_3:49298262-49298281 | None:intergenic | 30.0% | |
| TTACTTGAACAACAAGCAAA+TGG | + | chr4_3:49298490-49298509 | None:intergenic | 30.0% | |
| !! | TTTGCTTGTTGTTCAAGTAA+TGG | - | chr4_3:49298490-49298509 | Msa0644940:intron | 30.0% |
| !! | ATCTTTGATGATTTTCCCTT+GGG | - | chr4_3:49298692-49298711 | Msa0644940:intron | 30.0% |
| TTTCCCTTGGGATTAAAAAA+TGG | - | chr4_3:49298704-49298723 | Msa0644940:intron | 30.0% | |
| !!! | CAACCATTTTTTAATCCCAA+GGG | + | chr4_3:49298710-49298729 | None:intergenic | 30.0% |
| AAAAAATGGTTGGACCTTTA+TGG | - | chr4_3:49298718-49298737 | Msa0644940:CDS | 30.0% | |
| TTACAAATAGGTTCTCTTCA+AGG | + | chr4_3:49298780-49298799 | None:intergenic | 30.0% | |
| TGAAGAGAACCTATTTGTAA+AGG | - | chr4_3:49298780-49298799 | Msa0644940:CDS | 30.0% | |
| !!! | TTTAATTTGGGTGCTTTTTG+AGG | - | chr4_3:49299017-49299036 | Msa0644940:CDS | 30.0% |
| ATTTGTATCCCATAGGTTTA+GGG | + | chr4_3:49297698-49297717 | Msa0644930:CDS | 30.0% | |
| CTTAAAGCGAATATGGTTAA+TGG | - | chr4_3:49297994-49298013 | Msa0644940:intron | 30.0% | |
| ATTAGGGTTGTTGAAATTGA+AGG | - | chr4_3:49298075-49298094 | Msa0644940:intron | 30.0% | |
| ACACTTAACATATAGAAGCA+TGG | + | chr4_3:49298262-49298281 | None:intergenic | 30.0% | |
| TTACTTGAACAACAAGCAAA+TGG | + | chr4_3:49298490-49298509 | None:intergenic | 30.0% | |
| !! | TTTGCTTGTTGTTCAAGTAA+TGG | - | chr4_3:49298490-49298509 | Msa0644940:intron | 30.0% |
| !! | ATCTTTGATGATTTTCCCTT+GGG | - | chr4_3:49298692-49298711 | Msa0644940:intron | 30.0% |
| TTTCCCTTGGGATTAAAAAA+TGG | - | chr4_3:49298704-49298723 | Msa0644940:intron | 30.0% | |
| !!! | CAACCATTTTTTAATCCCAA+GGG | + | chr4_3:49298710-49298729 | None:intergenic | 30.0% |
| AAAAAATGGTTGGACCTTTA+TGG | - | chr4_3:49298718-49298737 | Msa0644940:CDS | 30.0% | |
| TTACAAATAGGTTCTCTTCA+AGG | + | chr4_3:49298780-49298799 | None:intergenic | 30.0% | |
| TGAAGAGAACCTATTTGTAA+AGG | - | chr4_3:49298780-49298799 | Msa0644940:CDS | 30.0% | |
| !!! | TTTAATTTGGGTGCTTTTTG+AGG | - | chr4_3:49299017-49299036 | Msa0644940:CDS | 30.0% |
| GATTTGTATCCCATAGGTTT+AGG | + | chr4_3:49297699-49297718 | Msa0644930:CDS | 35.0% | |
| ATACAAATCCCCTATCTCTA+TGG | - | chr4_3:49297710-49297729 | Msa0644940:CDS | 35.0% | |
| TACAAATCCCCTATCTCTAT+GGG | - | chr4_3:49297711-49297730 | Msa0644940:CDS | 35.0% | |
| ACCAATTTCTTCCCTGAATT+CGG | - | chr4_3:49297775-49297794 | Msa0644940:intron | 35.0% | |
| TTACACAAACGAAGATGTGT+TGG | - | chr4_3:49297876-49297895 | Msa0644940:intron | 35.0% | |
| AGAGTGGTAATTTCATGAGT+AGG | - | chr4_3:49297938-49297957 | Msa0644940:intron | 35.0% | |
| ! | AGGTTTAAGATTCCTGATGA+TGG | - | chr4_3:49297958-49297977 | Msa0644940:intron | 35.0% |
| ! | TATTCGCTTTAAGCTCTTGA+AGG | + | chr4_3:49297987-49298006 | None:intergenic | 35.0% |
| TCAAGAGCTTAAAGCGAATA+TGG | - | chr4_3:49297987-49298006 | Msa0644940:intron | 35.0% | |
| CCAGACAATTGTTGAATCTT+AGG | + | chr4_3:49298039-49298058 | None:intergenic | 35.0% | |
| CCTAAGATTCAACAATTGTC+TGG | - | chr4_3:49298036-49298055 | Msa0644940:intron | 35.0% | |
| !! | AACAATTGTCTGGTTCTGAT+GGG | - | chr4_3:49298046-49298065 | Msa0644940:intron | 35.0% |
| TGAAGAGAAACACATTCAGT+CGG | + | chr4_3:49298103-49298122 | None:intergenic | 35.0% | |
| TATGTTTCATCAGCTTCTTG+TGG | - | chr4_3:49298387-49298406 | Msa0644940:intron | 35.0% | |
| ATGAGAAAACATGACTAAGG+AGG | + | chr4_3:49298462-49298481 | None:intergenic | 35.0% | |
| ! | CCTTAGTCATGTTTTCTCAT+CGG | - | chr4_3:49298462-49298481 | Msa0644940:intron | 35.0% |
| TCTTCTCACTAAGATGCTAT+AGG | - | chr4_3:49298649-49298668 | Msa0644940:intron | 35.0% | |
| !! | CATCTTTGATGATTTTCCCT+TGG | - | chr4_3:49298691-49298710 | Msa0644940:intron | 35.0% |
| !!! | CCAACCATTTTTTAATCCCA+AGG | + | chr4_3:49298711-49298730 | None:intergenic | 35.0% |
| CCTTGGGATTAAAAAATGGT+TGG | - | chr4_3:49298708-49298727 | Msa0644940:CDS | 35.0% | |
| GATTTGTATCCCATAGGTTT+AGG | + | chr4_3:49297699-49297718 | Msa0644930:CDS | 35.0% | |
| ATACAAATCCCCTATCTCTA+TGG | - | chr4_3:49297710-49297729 | Msa0644940:CDS | 35.0% | |
| TACAAATCCCCTATCTCTAT+GGG | - | chr4_3:49297711-49297730 | Msa0644940:CDS | 35.0% | |
| ACCAATTTCTTCCCTGAATT+CGG | - | chr4_3:49297775-49297794 | Msa0644940:intron | 35.0% | |
| TTACACAAACGAAGATGTGT+TGG | - | chr4_3:49297876-49297895 | Msa0644940:intron | 35.0% | |
| AGAGTGGTAATTTCATGAGT+AGG | - | chr4_3:49297938-49297957 | Msa0644940:intron | 35.0% | |
| ! | AGGTTTAAGATTCCTGATGA+TGG | - | chr4_3:49297958-49297977 | Msa0644940:intron | 35.0% |
| ! | TATTCGCTTTAAGCTCTTGA+AGG | + | chr4_3:49297987-49298006 | None:intergenic | 35.0% |
| TCAAGAGCTTAAAGCGAATA+TGG | - | chr4_3:49297987-49298006 | Msa0644940:intron | 35.0% | |
| CCAGACAATTGTTGAATCTT+AGG | + | chr4_3:49298039-49298058 | None:intergenic | 35.0% | |
| CCTAAGATTCAACAATTGTC+TGG | - | chr4_3:49298036-49298055 | Msa0644940:intron | 35.0% | |
| !! | AACAATTGTCTGGTTCTGAT+GGG | - | chr4_3:49298046-49298065 | Msa0644940:intron | 35.0% |
| TGAAGAGAAACACATTCAGT+CGG | + | chr4_3:49298103-49298122 | None:intergenic | 35.0% | |
| TATGTTTCATCAGCTTCTTG+TGG | - | chr4_3:49298387-49298406 | Msa0644940:intron | 35.0% | |
| ATGAGAAAACATGACTAAGG+AGG | + | chr4_3:49298462-49298481 | None:intergenic | 35.0% | |
| ! | CCTTAGTCATGTTTTCTCAT+CGG | - | chr4_3:49298462-49298481 | Msa0644940:intron | 35.0% |
| TCTTCTCACTAAGATGCTAT+AGG | - | chr4_3:49298649-49298668 | Msa0644940:intron | 35.0% | |
| !! | CATCTTTGATGATTTTCCCT+TGG | - | chr4_3:49298691-49298710 | Msa0644940:intron | 35.0% |
| !!! | CCAACCATTTTTTAATCCCA+AGG | + | chr4_3:49298711-49298730 | None:intergenic | 35.0% |
| CCTTGGGATTAAAAAATGGT+TGG | - | chr4_3:49298708-49298727 | Msa0644940:CDS | 35.0% | |
| TCGATAATACCCATCAACGA+AGG | - | chr4_3:49297649-49297668 | Msa0644940:CDS | 40.0% | |
| ATGTGTTGGATCTGTTGTCT+TGG | + | chr4_3:49297675-49297694 | Msa0644930:intron | 40.0% | |
| CAACACATCCCTAAACCTAT+GGG | - | chr4_3:49297687-49297706 | Msa0644940:CDS | 40.0% | |
| ATAGGGGATTTGTATCCCAT+AGG | + | chr4_3:49297705-49297724 | Msa0644930:CDS | 40.0% | |
| AAAGGATCCCATAGAGATAG+GGG | + | chr4_3:49297721-49297740 | Msa0644930:intron | 40.0% | |
| GAAAGGATCCCATAGAGATA+GGG | + | chr4_3:49297722-49297741 | Msa0644930:intron | 40.0% | |
| TGAAAGGATCCCATAGAGAT+AGG | + | chr4_3:49297723-49297742 | Msa0644930:intron | 40.0% | |
| ATCTCTATGGGATCCTTTCA+TGG | - | chr4_3:49297723-49297742 | Msa0644940:CDS | 40.0% | |
| !! | AGAAATTGGTGATGGGTGAA+GGG | + | chr4_3:49297765-49297784 | Msa0644930:intron | 40.0% |
| !! | AAGAAATTGGTGATGGGTGA+AGG | + | chr4_3:49297766-49297785 | Msa0644930:intron | 40.0% |
| ! | TCAGGGAAGAAATTGGTGAT+GGG | + | chr4_3:49297772-49297791 | Msa0644930:intron | 40.0% |
| TTCAGGGAAGAAATTGGTGA+TGG | + | chr4_3:49297773-49297792 | Msa0644930:intron | 40.0% | |
| ACATCTTCGTTTGTGTAACC+AGG | + | chr4_3:49297874-49297893 | Msa0644930:CDS | 40.0% | |
| TCAAGATGAGAGAATGCTTC+AGG | - | chr4_3:49297906-49297925 | Msa0644940:intron | 40.0% | |
| TCTTGAAGGTTACCATCATC+AGG | + | chr4_3:49297973-49297992 | None:intergenic | 40.0% | |
| !! | CAACAATTGTCTGGTTCTGA+TGG | - | chr4_3:49298045-49298064 | Msa0644940:intron | 40.0% |
| TTCTGATGGGAGGAACATTA+GGG | - | chr4_3:49298059-49298078 | Msa0644940:intron | 40.0% | |
| AACATGACTAAGGAGGCTAA+TGG | + | chr4_3:49298455-49298474 | None:intergenic | 40.0% | |
| CCGATGAGAAAACATGACTA+AGG | + | chr4_3:49298465-49298484 | None:intergenic | 40.0% | |
| ACGAGTTTGAAGAGAACAAG+TGG | + | chr4_3:49298551-49298570 | None:intergenic | 40.0% | |
| TTAAGATGCAACGCTCCAAA+GGG | + | chr4_3:49298575-49298594 | None:intergenic | 40.0% | |
| ACTCTCATCAGTGAGATTAC+AGG | - | chr4_3:49298847-49298866 | Msa0644940:CDS | 40.0% | |
| CTCCTTCTTCATACTCCTTA+GGG | - | chr4_3:49298883-49298902 | Msa0644940:CDS | 40.0% | |
| TACTCCTTAGGGACATTGAT+AGG | - | chr4_3:49298894-49298913 | Msa0644940:CDS | 40.0% | |
| ACTCCTTAGGGACATTGATA+GGG | - | chr4_3:49298895-49298914 | Msa0644940:CDS | 40.0% | |
| !! | TTGGGTGCTTTTTGAGGAAA+AGG | - | chr4_3:49299023-49299042 | Msa0644940:CDS | 40.0% |
| !! | GTGCTTTTTGAGGAAAAGGT+TGG | - | chr4_3:49299027-49299046 | Msa0644940:CDS | 40.0% |
| !! | CTTTTTGAGGAAAAGGTTGG+AGG | - | chr4_3:49299030-49299049 | Msa0644940:CDS | 40.0% |
| TCGATAATACCCATCAACGA+AGG | - | chr4_3:49297649-49297668 | Msa0644940:CDS | 40.0% | |
| ATGTGTTGGATCTGTTGTCT+TGG | + | chr4_3:49297675-49297694 | Msa0644930:intron | 40.0% | |
| CAACACATCCCTAAACCTAT+GGG | - | chr4_3:49297687-49297706 | Msa0644940:CDS | 40.0% | |
| ATAGGGGATTTGTATCCCAT+AGG | + | chr4_3:49297705-49297724 | Msa0644930:CDS | 40.0% | |
| AAAGGATCCCATAGAGATAG+GGG | + | chr4_3:49297721-49297740 | Msa0644930:intron | 40.0% | |
| GAAAGGATCCCATAGAGATA+GGG | + | chr4_3:49297722-49297741 | Msa0644930:intron | 40.0% | |
| TGAAAGGATCCCATAGAGAT+AGG | + | chr4_3:49297723-49297742 | Msa0644930:intron | 40.0% | |
| ATCTCTATGGGATCCTTTCA+TGG | - | chr4_3:49297723-49297742 | Msa0644940:CDS | 40.0% | |
| !! | AGAAATTGGTGATGGGTGAA+GGG | + | chr4_3:49297765-49297784 | Msa0644930:intron | 40.0% |
| !! | AAGAAATTGGTGATGGGTGA+AGG | + | chr4_3:49297766-49297785 | Msa0644930:intron | 40.0% |
| ! | TCAGGGAAGAAATTGGTGAT+GGG | + | chr4_3:49297772-49297791 | Msa0644930:intron | 40.0% |
| TTCAGGGAAGAAATTGGTGA+TGG | + | chr4_3:49297773-49297792 | Msa0644930:intron | 40.0% | |
| ACATCTTCGTTTGTGTAACC+AGG | + | chr4_3:49297874-49297893 | Msa0644930:CDS | 40.0% | |
| TCAAGATGAGAGAATGCTTC+AGG | - | chr4_3:49297906-49297925 | Msa0644940:intron | 40.0% | |
| TCTTGAAGGTTACCATCATC+AGG | + | chr4_3:49297973-49297992 | None:intergenic | 40.0% | |
| !! | CAACAATTGTCTGGTTCTGA+TGG | - | chr4_3:49298045-49298064 | Msa0644940:intron | 40.0% |
| TTCTGATGGGAGGAACATTA+GGG | - | chr4_3:49298059-49298078 | Msa0644940:intron | 40.0% | |
| AACATGACTAAGGAGGCTAA+TGG | + | chr4_3:49298455-49298474 | None:intergenic | 40.0% | |
| CCGATGAGAAAACATGACTA+AGG | + | chr4_3:49298465-49298484 | None:intergenic | 40.0% | |
| ACGAGTTTGAAGAGAACAAG+TGG | + | chr4_3:49298551-49298570 | None:intergenic | 40.0% | |
| TTAAGATGCAACGCTCCAAA+GGG | + | chr4_3:49298575-49298594 | None:intergenic | 40.0% | |
| ACTCTCATCAGTGAGATTAC+AGG | - | chr4_3:49298847-49298866 | Msa0644940:CDS | 40.0% | |
| CTCCTTCTTCATACTCCTTA+GGG | - | chr4_3:49298883-49298902 | Msa0644940:CDS | 40.0% | |
| TACTCCTTAGGGACATTGAT+AGG | - | chr4_3:49298894-49298913 | Msa0644940:CDS | 40.0% | |
| ACTCCTTAGGGACATTGATA+GGG | - | chr4_3:49298895-49298914 | Msa0644940:CDS | 40.0% | |
| !! | TTGGGTGCTTTTTGAGGAAA+AGG | - | chr4_3:49299023-49299042 | Msa0644940:CDS | 40.0% |
| !! | GTGCTTTTTGAGGAAAAGGT+TGG | - | chr4_3:49299027-49299046 | Msa0644940:CDS | 40.0% |
| !! | CTTTTTGAGGAAAAGGTTGG+AGG | - | chr4_3:49299030-49299049 | Msa0644940:CDS | 40.0% |
| ! | TTGTCTTGGCCTTCGTTGAT+GGG | + | chr4_3:49297661-49297680 | Msa0644930:intron | 45.0% |
| CCATAGGTTTAGGGATGTGT+TGG | + | chr4_3:49297689-49297708 | Msa0644930:CDS | 45.0% | |
| CCAACACATCCCTAAACCTA+TGG | - | chr4_3:49297686-49297705 | Msa0644940:CDS | 45.0% | |
| GGGAAGTGGAAATCCATGAA+AGG | + | chr4_3:49297739-49297758 | Msa0644930:intron | 45.0% | |
| GCCGAATTCAGGGAAGAAAT+TGG | + | chr4_3:49297779-49297798 | Msa0644930:intron | 45.0% | |
| TTCTTCCCTGAATTCGGCTT+CGG | - | chr4_3:49297781-49297800 | Msa0644940:intron | 45.0% | |
| ATGATCCGAAGCCGAATTCA+GGG | + | chr4_3:49297789-49297808 | Msa0644930:intron | 45.0% | |
| ! | CTTCAGGTTAGTGTTGAGAG+TGG | - | chr4_3:49297922-49297941 | Msa0644940:intron | 45.0% |
| !! | AATTGTCTGGTTCTGATGGG+AGG | - | chr4_3:49298049-49298068 | Msa0644940:intron | 45.0% |
| GTTCTGATGGGAGGAACATT+AGG | - | chr4_3:49298058-49298077 | Msa0644940:intron | 45.0% | |
| TGTGTGTGTGTGTGTTCTTG+TGG | - | chr4_3:49298208-49298227 | Msa0644940:intron | 45.0% | |
| GTGTGTGTGTGTGTTCTTGT+GGG | - | chr4_3:49298209-49298228 | Msa0644940:intron | 45.0% | |
| CTCTTCAAACTCGTTCCCTT+TGG | - | chr4_3:49298557-49298576 | Msa0644940:intron | 45.0% | |
| CTTAAGATGCAACGCTCCAA+AGG | + | chr4_3:49298576-49298595 | None:intergenic | 45.0% | |
| !! | CTTTGGAGCGTTGCATCTTA+AGG | - | chr4_3:49298574-49298593 | Msa0644940:intron | 45.0% |
| !!! | GAGTTTTGAGCTCAAAGCTC+AGG | + | chr4_3:49298831-49298850 | None:intergenic | 45.0% |
| ! | GGAGTATGAAGAAGGAGCAT+TGG | + | chr4_3:49298880-49298899 | None:intergenic | 45.0% |
| GCTCCTTCTTCATACTCCTT+AGG | - | chr4_3:49298882-49298901 | Msa0644940:CDS | 45.0% | |
| ! | GTCCCTAAGGAGTATGAAGA+AGG | + | chr4_3:49298888-49298907 | None:intergenic | 45.0% |
| AAGCCCTATCAATGTCCCTA+AGG | + | chr4_3:49298901-49298920 | None:intergenic | 45.0% | |
| AGGTGGTCTCATTCTTACCA+AGG | - | chr4_3:49299114-49299133 | Msa0644940:CDS | 45.0% | |
| GGTGGTCTCATTCTTACCAA+GGG | - | chr4_3:49299115-49299134 | Msa0644940:CDS | 45.0% | |
| ! | TTGTCTTGGCCTTCGTTGAT+GGG | + | chr4_3:49297661-49297680 | Msa0644930:intron | 45.0% |
| CCATAGGTTTAGGGATGTGT+TGG | + | chr4_3:49297689-49297708 | Msa0644930:CDS | 45.0% | |
| CCAACACATCCCTAAACCTA+TGG | - | chr4_3:49297686-49297705 | Msa0644940:CDS | 45.0% | |
| GGGAAGTGGAAATCCATGAA+AGG | + | chr4_3:49297739-49297758 | Msa0644930:intron | 45.0% | |
| GCCGAATTCAGGGAAGAAAT+TGG | + | chr4_3:49297779-49297798 | Msa0644930:intron | 45.0% | |
| TTCTTCCCTGAATTCGGCTT+CGG | - | chr4_3:49297781-49297800 | Msa0644940:intron | 45.0% | |
| ATGATCCGAAGCCGAATTCA+GGG | + | chr4_3:49297789-49297808 | Msa0644930:intron | 45.0% | |
| ! | CTTCAGGTTAGTGTTGAGAG+TGG | - | chr4_3:49297922-49297941 | Msa0644940:intron | 45.0% |
| !! | AATTGTCTGGTTCTGATGGG+AGG | - | chr4_3:49298049-49298068 | Msa0644940:intron | 45.0% |
| GTTCTGATGGGAGGAACATT+AGG | - | chr4_3:49298058-49298077 | Msa0644940:intron | 45.0% | |
| TGTGTGTGTGTGTGTTCTTG+TGG | - | chr4_3:49298208-49298227 | Msa0644940:intron | 45.0% | |
| GTGTGTGTGTGTGTTCTTGT+GGG | - | chr4_3:49298209-49298228 | Msa0644940:intron | 45.0% | |
| CTCTTCAAACTCGTTCCCTT+TGG | - | chr4_3:49298557-49298576 | Msa0644940:intron | 45.0% | |
| CTTAAGATGCAACGCTCCAA+AGG | + | chr4_3:49298576-49298595 | None:intergenic | 45.0% | |
| !! | CTTTGGAGCGTTGCATCTTA+AGG | - | chr4_3:49298574-49298593 | Msa0644940:intron | 45.0% |
| !!! | GAGTTTTGAGCTCAAAGCTC+AGG | + | chr4_3:49298831-49298850 | None:intergenic | 45.0% |
| ! | GGAGTATGAAGAAGGAGCAT+TGG | + | chr4_3:49298880-49298899 | None:intergenic | 45.0% |
| GCTCCTTCTTCATACTCCTT+AGG | - | chr4_3:49298882-49298901 | Msa0644940:CDS | 45.0% | |
| ! | GTCCCTAAGGAGTATGAAGA+AGG | + | chr4_3:49298888-49298907 | None:intergenic | 45.0% |
| AAGCCCTATCAATGTCCCTA+AGG | + | chr4_3:49298901-49298920 | None:intergenic | 45.0% | |
| AGGTGGTCTCATTCTTACCA+AGG | - | chr4_3:49299114-49299133 | Msa0644940:CDS | 45.0% | |
| GGTGGTCTCATTCTTACCAA+GGG | - | chr4_3:49299115-49299134 | Msa0644940:CDS | 45.0% | |
| ! | GTTGTCTTGGCCTTCGTTGA+TGG | + | chr4_3:49297662-49297681 | Msa0644930:intron | 50.0% |
| GATGATCCGAAGCCGAATTC+AGG | + | chr4_3:49297790-49297809 | Msa0644930:intron | 50.0% | |
| ATCATCCCTAAACACCCGCA+TGG | - | chr4_3:49297804-49297823 | Msa0644940:intron | 50.0% | |
| CCAATCCATGCGGGTGTTTA+GGG | + | chr4_3:49297812-49297831 | Msa0644930:intron | 50.0% | |
| TCCAATCCATGCGGGTGTTT+AGG | + | chr4_3:49297813-49297832 | Msa0644930:intron | 50.0% | |
| TGTCGATCTCCAATCCATGC+GGG | + | chr4_3:49297821-49297840 | Msa0644930:intron | 50.0% | |
| ! | GTGTCGATCTCCAATCCATG+CGG | + | chr4_3:49297822-49297841 | Msa0644930:intron | 50.0% |
| ACCTTCCACACATGAGCTCT+CGG | + | chr4_3:49297844-49297863 | Msa0644930:CDS | 50.0% | |
| GAGACAGTCATCGACCAAGT+CGG | - | chr4_3:49298603-49298622 | Msa0644940:intron | 50.0% | |
| ! | ACCAAGTCGGCTGATTCTCT+AGG | - | chr4_3:49298616-49298635 | Msa0644940:intron | 50.0% |
| ACCTAGAGAATCAGCCGACT+TGG | + | chr4_3:49298620-49298639 | None:intergenic | 50.0% | |
| GCGAGCGAGAAAAGCCATAA+AGG | + | chr4_3:49298735-49298754 | None:intergenic | 50.0% | |
| ACAGCAGTTGCGGGAAATAG+AGG | + | chr4_3:49298757-49298776 | None:intergenic | 50.0% | |
| TCTTCAAGGACAGCAGTTGC+GGG | + | chr4_3:49298766-49298785 | None:intergenic | 50.0% | |
| CTCTTCAAGGACAGCAGTTG+CGG | + | chr4_3:49298767-49298786 | None:intergenic | 50.0% | |
| !! | GAAGAAGGAGCATTGGAAGC+TGG | + | chr4_3:49298873-49298892 | None:intergenic | 50.0% |
| ! | GTTGTCTTGGCCTTCGTTGA+TGG | + | chr4_3:49297662-49297681 | Msa0644930:intron | 50.0% |
| GATGATCCGAAGCCGAATTC+AGG | + | chr4_3:49297790-49297809 | Msa0644930:intron | 50.0% | |
| ATCATCCCTAAACACCCGCA+TGG | - | chr4_3:49297804-49297823 | Msa0644940:intron | 50.0% | |
| CCAATCCATGCGGGTGTTTA+GGG | + | chr4_3:49297812-49297831 | Msa0644930:intron | 50.0% | |
| TCCAATCCATGCGGGTGTTT+AGG | + | chr4_3:49297813-49297832 | Msa0644930:intron | 50.0% | |
| TGTCGATCTCCAATCCATGC+GGG | + | chr4_3:49297821-49297840 | Msa0644930:intron | 50.0% | |
| ! | GTGTCGATCTCCAATCCATG+CGG | + | chr4_3:49297822-49297841 | Msa0644930:intron | 50.0% |
| ACCTTCCACACATGAGCTCT+CGG | + | chr4_3:49297844-49297863 | Msa0644930:CDS | 50.0% | |
| GAGACAGTCATCGACCAAGT+CGG | - | chr4_3:49298603-49298622 | Msa0644940:intron | 50.0% | |
| ! | ACCAAGTCGGCTGATTCTCT+AGG | - | chr4_3:49298616-49298635 | Msa0644940:intron | 50.0% |
| ACCTAGAGAATCAGCCGACT+TGG | + | chr4_3:49298620-49298639 | None:intergenic | 50.0% | |
| GCGAGCGAGAAAAGCCATAA+AGG | + | chr4_3:49298735-49298754 | None:intergenic | 50.0% | |
| ACAGCAGTTGCGGGAAATAG+AGG | + | chr4_3:49298757-49298776 | None:intergenic | 50.0% | |
| TCTTCAAGGACAGCAGTTGC+GGG | + | chr4_3:49298766-49298785 | None:intergenic | 50.0% | |
| CTCTTCAAGGACAGCAGTTG+CGG | + | chr4_3:49298767-49298786 | None:intergenic | 50.0% | |
| !! | GAAGAAGGAGCATTGGAAGC+TGG | + | chr4_3:49298873-49298892 | None:intergenic | 50.0% |
| !! | TGGTGATGGGTGAAGGGAGT+GGG | + | chr4_3:49297759-49297778 | Msa0644930:intron | 55.0% |
| !! | TTGGTGATGGGTGAAGGGAG+TGG | + | chr4_3:49297760-49297779 | Msa0644930:intron | 55.0% |
| CCCTAAACACCCGCATGGAT+TGG | - | chr4_3:49297809-49297828 | Msa0644940:intron | 55.0% | |
| ACCGAGAGCTCATGTGTGGA+AGG | - | chr4_3:49297840-49297859 | Msa0644940:intron | 55.0% | |
| GAGAGCTCATGTGTGGAAGG+TGG | - | chr4_3:49297843-49297862 | Msa0644940:intron | 55.0% | |
| AGCTCATGTGTGGAAGGTGG+TGG | - | chr4_3:49297846-49297865 | Msa0644940:intron | 55.0% | |
| AAGGTTGGAGGACTGTCAGC+TGG | - | chr4_3:49299042-49299061 | Msa0644940:CDS | 55.0% | |
| !! | TGGTGATGGGTGAAGGGAGT+GGG | + | chr4_3:49297759-49297778 | Msa0644930:intron | 55.0% |
| !! | TTGGTGATGGGTGAAGGGAG+TGG | + | chr4_3:49297760-49297779 | Msa0644930:intron | 55.0% |
| CCCTAAACACCCGCATGGAT+TGG | - | chr4_3:49297809-49297828 | Msa0644940:intron | 55.0% | |
| ACCGAGAGCTCATGTGTGGA+AGG | - | chr4_3:49297840-49297859 | Msa0644940:intron | 55.0% | |
| GAGAGCTCATGTGTGGAAGG+TGG | - | chr4_3:49297843-49297862 | Msa0644940:intron | 55.0% | |
| AGCTCATGTGTGGAAGGTGG+TGG | - | chr4_3:49297846-49297865 | Msa0644940:intron | 55.0% | |
| AAGGTTGGAGGACTGTCAGC+TGG | - | chr4_3:49299042-49299061 | Msa0644940:CDS | 55.0% | |
| TGGGTGAAGGGAGTGGGAAG+TGG | + | chr4_3:49297753-49297772 | Msa0644930:intron | 60.0% | |
| CGACACCGAGAGCTCATGTG+TGG | - | chr4_3:49297836-49297855 | Msa0644940:intron | 60.0% | |
| ! | GTGTGGAAGGTGGTGGTTCC+TGG | - | chr4_3:49297853-49297872 | Msa0644940:intron | 60.0% |
| CTTGGAGTTTGCCAGGGCGT+TGG | + | chr4_3:49299074-49299093 | None:intergenic | 60.0% | |
| CAACGCCCTGGCAAACTCCA+AGG | - | chr4_3:49299072-49299091 | Msa0644940:CDS | 60.0% | |
| CGCCACCTTGGAGTTTGCCA+GGG | + | chr4_3:49299080-49299099 | None:intergenic | 60.0% | |
| TCGCCACCTTGGAGTTTGCC+AGG | + | chr4_3:49299081-49299100 | None:intergenic | 60.0% | |
| CTCCAAGGTGGCGACTGCAA+AGG | - | chr4_3:49299087-49299106 | Msa0644940:CDS | 60.0% | |
| CACCTTTGCAGTCGCCACCT+TGG | + | chr4_3:49299092-49299111 | None:intergenic | 60.0% | |
| CAAGGTGGCGACTGCAAAGG+TGG | - | chr4_3:49299090-49299109 | Msa0644940:CDS | 60.0% | |
| GTGGCGACTGCAAAGGTGGA+AGG | - | chr4_3:49299094-49299113 | Msa0644940:CDS | 60.0% | |
| GCGACTGCAAAGGTGGAAGG+TGG | - | chr4_3:49299097-49299116 | Msa0644940:CDS | 60.0% | |
| TGGGTGAAGGGAGTGGGAAG+TGG | + | chr4_3:49297753-49297772 | Msa0644930:intron | 60.0% | |
| CGACACCGAGAGCTCATGTG+TGG | - | chr4_3:49297836-49297855 | Msa0644940:intron | 60.0% | |
| ! | GTGTGGAAGGTGGTGGTTCC+TGG | - | chr4_3:49297853-49297872 | Msa0644940:intron | 60.0% |
| CTTGGAGTTTGCCAGGGCGT+TGG | + | chr4_3:49299074-49299093 | None:intergenic | 60.0% | |
| CAACGCCCTGGCAAACTCCA+AGG | - | chr4_3:49299072-49299091 | Msa0644940:CDS | 60.0% | |
| CGCCACCTTGGAGTTTGCCA+GGG | + | chr4_3:49299080-49299099 | None:intergenic | 60.0% | |
| TCGCCACCTTGGAGTTTGCC+AGG | + | chr4_3:49299081-49299100 | None:intergenic | 60.0% | |
| CTCCAAGGTGGCGACTGCAA+AGG | - | chr4_3:49299087-49299106 | Msa0644940:CDS | 60.0% | |
| CACCTTTGCAGTCGCCACCT+TGG | + | chr4_3:49299092-49299111 | None:intergenic | 60.0% | |
| CAAGGTGGCGACTGCAAAGG+TGG | - | chr4_3:49299090-49299109 | Msa0644940:CDS | 60.0% | |
| GTGGCGACTGCAAAGGTGGA+AGG | - | chr4_3:49299094-49299113 | Msa0644940:CDS | 60.0% | |
| GCGACTGCAAAGGTGGAAGG+TGG | - | chr4_3:49299097-49299116 | Msa0644940:CDS | 60.0% | |
| CGCCCTGGCAAACTCCAAGG+TGG | - | chr4_3:49299075-49299094 | Msa0644940:CDS | 65.0% | |
| CGCCCTGGCAAACTCCAAGG+TGG | - | chr4_3:49299075-49299094 | Msa0644940:CDS | 65.0% | |
| GCTGGAGCATGCCAACGCCC+TGG | - | chr4_3:49299060-49299079 | Msa0644940:CDS | 70.0% | |
| GCTGGAGCATGCCAACGCCC+TGG | - | chr4_3:49299060-49299079 | Msa0644940:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 49297646 | 49299140 | 49297646 | ID=Msa0644940;Name=Msa0644940 |
| chr4_3 | mRNA | 49297646 | 49299140 | 49297646 | ID=Msa0644940-mRNA-1;Parent=Msa0644940;Name=Msa0644940-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0|1|0.5|0.33|3|0|175 |
| chr4_3 | exon | 49298934 | 49299140 | 49298934 | ID=Msa0644940-mRNA-1:exon:11769;Parent=Msa0644940-mRNA-1 |
| chr4_3 | exon | 49298706 | 49298924 | 49298706 | ID=Msa0644940-mRNA-1:exon:11768;Parent=Msa0644940-mRNA-1 |
| chr4_3 | exon | 49297646 | 49297747 | 49297646 | ID=Msa0644940-mRNA-1:exon:11767;Parent=Msa0644940-mRNA-1 |
| chr4_3 | CDS | 49298934 | 49299140 | 49298934 | ID=Msa0644940-mRNA-1:cds;Parent=Msa0644940-mRNA-1 |
| chr4_3 | CDS | 49298706 | 49298924 | 49298706 | ID=Msa0644940-mRNA-1:cds;Parent=Msa0644940-mRNA-1 |
| chr4_3 | CDS | 49297646 | 49297747 | 49297646 | ID=Msa0644940-mRNA-1:cds;Parent=Msa0644940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
