Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647060 | XP_024636124.1 | 93.434 | 198 | 13 | 0 | 1 | 198 | 4 | 201 | 3.31e-118 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647060 | sp|Q9SJT8|SRS3_ARATH | 50.758 | 132 | 49 | 2 | 11 | 137 | 3 | 123 | 9.12e-40 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647060 | A0A396I9B8 | 93.434 | 198 | 13 | 0 | 1 | 198 | 4 | 201 | 1.58e-118 | 343 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0647060 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0647060 | Msa1339180 | 0.841337 | 5.051320e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647060 | MtrunA17_Chr4g0035591 | 93.434 | 198 | 13 | 0 | 1 | 198 | 4 | 201 | 3.04e-122 | 343 |
| Msa0647060 | MtrunA17_Chr8g0372461 | 50.000 | 136 | 59 | 2 | 13 | 139 | 117 | 252 | 4.46e-42 | 144 |
| Msa0647060 | MtrunA17_Chr3g0142171 | 50.345 | 145 | 52 | 4 | 14 | 138 | 83 | 227 | 2.77e-41 | 141 |
| Msa0647060 | MtrunA17_Chr5g0404781 | 45.283 | 159 | 56 | 4 | 15 | 142 | 98 | 256 | 1.92e-38 | 134 |
| Msa0647060 | MtrunA17_Chr1g0155791 | 42.568 | 148 | 60 | 2 | 15 | 137 | 120 | 267 | 1.83e-34 | 124 |
| Msa0647060 | MtrunA17_Chr5g0441921 | 38.562 | 153 | 62 | 2 | 17 | 137 | 124 | 276 | 1.46e-29 | 111 |
| Msa0647060 | MtrunA17_Chr8g0353111 | 36.571 | 175 | 73 | 3 | 6 | 142 | 113 | 287 | 1.82e-27 | 105 |
| Msa0647060 | MtrunA17_Chr0c01g0489181 | 86.275 | 51 | 7 | 0 | 1 | 51 | 51 | 101 | 3.60e-26 | 97.1 |
| Msa0647060 | MtrunA17_Chr3g0082511 | 36.076 | 158 | 69 | 4 | 17 | 142 | 134 | 291 | 4.16e-24 | 97.1 |
| Msa0647060 | MtrunA17_Chr2g0281741 | 86.364 | 44 | 6 | 0 | 8 | 51 | 141 | 184 | 3.53e-22 | 89.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647060 | AT2G21400.1 | 50.758 | 132 | 49 | 2 | 11 | 137 | 3 | 123 | 9.27e-41 | 136 |
| Msa0647060 | AT2G21400.3 | 50.758 | 132 | 49 | 2 | 11 | 137 | 4 | 124 | 9.65e-41 | 136 |
| Msa0647060 | AT2G21400.4 | 49.265 | 136 | 60 | 2 | 11 | 137 | 3 | 138 | 1.99e-39 | 133 |
| Msa0647060 | AT2G21400.2 | 49.265 | 136 | 60 | 2 | 11 | 137 | 4 | 139 | 2.07e-39 | 133 |
| Msa0647060 | AT1G75520.1 | 37.327 | 217 | 87 | 6 | 14 | 193 | 122 | 326 | 8.76e-37 | 131 |
| Msa0647060 | AT5G66350.3 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 1.38e-36 | 130 |
| Msa0647060 | AT5G66350.2 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 1.68e-36 | 130 |
| Msa0647060 | AT5G66350.1 | 41.463 | 164 | 72 | 3 | 17 | 160 | 120 | 279 | 1.79e-36 | 130 |
| Msa0647060 | AT3G51060.1 | 36.620 | 213 | 98 | 6 | 15 | 190 | 142 | 354 | 5.71e-36 | 129 |
| Msa0647060 | AT2G18120.2 | 43.885 | 139 | 68 | 3 | 15 | 143 | 70 | 208 | 5.29e-35 | 123 |
| Msa0647060 | AT2G18120.1 | 43.262 | 141 | 68 | 3 | 15 | 143 | 70 | 210 | 2.38e-34 | 121 |
| Msa0647060 | AT1G19790.2 | 39.444 | 180 | 75 | 4 | 15 | 160 | 117 | 296 | 1.65e-32 | 120 |
| Msa0647060 | AT1G19790.1 | 39.444 | 180 | 75 | 4 | 15 | 160 | 117 | 296 | 1.65e-32 | 120 |
| Msa0647060 | AT4G36260.1 | 40.994 | 161 | 53 | 4 | 15 | 139 | 92 | 246 | 6.22e-32 | 117 |
| Msa0647060 | AT5G12330.1 | 34.518 | 197 | 84 | 4 | 17 | 176 | 112 | 300 | 6.53e-28 | 107 |
| Msa0647060 | AT5G12330.2 | 34.518 | 197 | 84 | 4 | 17 | 176 | 112 | 300 | 6.53e-28 | 107 |
| Msa0647060 | AT5G12330.4 | 34.518 | 197 | 84 | 4 | 17 | 176 | 199 | 387 | 1.05e-27 | 108 |
| Msa0647060 | AT3G54430.1 | 34.848 | 132 | 77 | 3 | 17 | 139 | 41 | 172 | 1.87e-20 | 84.7 |
| Msa0647060 | AT5G33210.2 | 65.957 | 47 | 16 | 0 | 15 | 61 | 15 | 61 | 4.48e-19 | 79.0 |
| Msa0647060 | AT5G12330.3 | 62.000 | 50 | 19 | 0 | 17 | 66 | 112 | 161 | 2.02e-18 | 80.1 |
| Msa0647060 | AT5G33210.1 | 65.957 | 47 | 16 | 0 | 15 | 61 | 50 | 96 | 3.03e-18 | 78.6 |
Find 45 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGCATCCATTGCCATCTTTC+AGG | 0.185899 | 4_3:-53023267 | Msa0647060:CDS |
| TTCTGATGAGTTCAAATTTC+CGG | 0.205380 | 4_3:-53023581 | Msa0647060:CDS |
| AAGATGTATTCAACACAATT+AGG | 0.212765 | 4_3:-53024149 | Msa0647060:CDS |
| AGGGAAAGAAGAAGTGTTAA+AGG | 0.254491 | 4_3:-53024129 | Msa0647060:CDS |
| AATTTCTACACTTGTTTGAT+AGG | 0.288184 | 4_3:+53023486 | None:intergenic |
| TATCAAACAAGTGTAGAAAT+TGG | 0.319031 | 4_3:-53023484 | Msa0647060:CDS |
| ACCACCTTCATGAACATAAA+AGG | 0.327971 | 4_3:-53023941 | Msa0647060:CDS |
| GTATTGAAGCTTTGTTGATC+AGG | 0.373732 | 4_3:+53023424 | None:intergenic |
| ATGTGTTCAGGTGCGCTCTA+TGG | 0.373967 | 4_3:-53023530 | Msa0647060:CDS |
| ATGCACAATCCTTCTTTGCT+TGG | 0.390646 | 4_3:+53024081 | None:intergenic |
| AGTGGTATTCTTTATGATCA+AGG | 0.401384 | 4_3:-53023448 | Msa0647060:CDS |
| CTTGGATTCCTGCCGATAGA+AGG | 0.408141 | 4_3:-53023995 | Msa0647060:CDS |
| AGATGTATTCAACACAATTA+GGG | 0.426718 | 4_3:-53024148 | Msa0647060:CDS |
| GGCCACATTGACATGTGTTC+AGG | 0.436853 | 4_3:-53023542 | Msa0647060:CDS |
| GGGAAAGAAGAAGTGTTAAA+GGG | 0.452664 | 4_3:-53024128 | Msa0647060:CDS |
| ATTGGAGGACATGTATTTAG+TGG | 0.464916 | 4_3:-53023466 | Msa0647060:CDS |
| CTGTGGGAACCAAGCAAAGA+AGG | 0.482489 | 4_3:-53024090 | Msa0647060:CDS |
| GATGGCAATGGATGCGGTGG+AGG | 0.491036 | 4_3:+53023274 | None:intergenic |
| GGCATACCGGGCCTGAAAGA+TGG | 0.493287 | 4_3:+53023256 | None:intergenic |
| CATTCTGTGACGCCTTCTAT+CGG | 0.499159 | 4_3:+53023983 | None:intergenic |
| AAGTGCTTCTGATATGTGTT+TGG | 0.503819 | 4_3:+53024015 | None:intergenic |
| TATTGAAGCTTTGTTGATCA+GGG | 0.517194 | 4_3:+53023425 | None:intergenic |
| CTGTGACGCCTTCTATCGGC+AGG | 0.519090 | 4_3:+53023987 | None:intergenic |
| GGACGAAACGGTTAATGAAA+CGG | 0.523314 | 4_3:-53023509 | Msa0647060:CDS |
| CCATTGCCATCTTTCAGGCC+CGG | 0.534404 | 4_3:-53023262 | None:intergenic |
| GCAAGTGCAAGTGCAACTAT+AGG | 0.535841 | 4_3:-53023328 | Msa0647060:CDS |
| CTGAAAGATGGCAATGGATG+CGG | 0.543278 | 4_3:+53023268 | None:intergenic |
| GCCATGGAACTCGTAACAGC+CGG | 0.560763 | 4_3:+53023562 | None:intergenic |
| GTCTGAAATGTCAAGACTGT+GGG | 0.561427 | 4_3:-53024106 | Msa0647060:CDS |
| TCCGGCTGTTACGAGTTCCA+TGG | 0.567211 | 4_3:-53023563 | Msa0647060:CDS |
| CGATAGAAGGCGTCACAGAA+TGG | 0.568956 | 4_3:-53023982 | Msa0647060:CDS |
| GCAATCCACACAGGTGATGA+TGG | 0.569958 | 4_3:-53023352 | Msa0647060:CDS |
| CAAACAAGTGTAGAAATTGG+AGG | 0.570503 | 4_3:-53023481 | Msa0647060:CDS |
| AACACATGTCAATGTGGCCA+TGG | 0.579628 | 4_3:+53023546 | None:intergenic |
| AGAAGGATTGTGCATACTCA+AGG | 0.587247 | 4_3:-53024073 | Msa0647060:CDS |
| GGTGCGCTCTATGGACGAAA+CGG | 0.590105 | 4_3:-53023521 | Msa0647060:CDS |
| CCGGGCCTGAAAGATGGCAA+TGG | 0.618050 | 4_3:+53023262 | None:intergenic |
| AGTAGTAATGCAATCCACAC+AGG | 0.618793 | 4_3:-53023361 | Msa0647060:CDS |
| TGAAGGTGGTGCTGATCAGA+AGG | 0.627301 | 4_3:+53023954 | None:intergenic |
| AAACACATATCAGAAGCACT+TGG | 0.635365 | 4_3:-53024013 | Msa0647060:CDS |
| AAAGATGGCAATGGATGCGG+TGG | 0.637766 | 4_3:+53023271 | None:intergenic |
| GGTCTGAAATGTCAAGACTG+TGG | 0.643818 | 4_3:-53024107 | Msa0647060:CDS |
| CACCTGAACACATGTCAATG+TGG | 0.680012 | 4_3:+53023540 | None:intergenic |
| GGTGGTGCTGATCAGAAGGA+TGG | 0.685704 | 4_3:+53023958 | None:intergenic |
| TTGCACCATCATCACCTGTG+TGG | 0.692440 | 4_3:+53023347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GGAAAAAAATGAACTATTTA+GGG | + | chr4_3:53023575-53023594 | None:intergenic | 20.0% |
| !! | AGGAAAAAAATGAACTATTT+AGG | + | chr4_3:53023576-53023595 | None:intergenic | 20.0% |
| !! | TTGAGTTAAAAGATCAAAAT+AGG | + | chr4_3:53023687-53023706 | None:intergenic | 20.0% |
| !! | CTGAAATATTAGACATATTA+CGG | + | chr4_3:53023808-53023827 | None:intergenic | 20.0% |
| !! | GGAAAAAAATGAACTATTTA+GGG | + | chr4_3:53023575-53023594 | None:intergenic | 20.0% |
| !! | AGGAAAAAAATGAACTATTT+AGG | + | chr4_3:53023576-53023595 | None:intergenic | 20.0% |
| !! | TTGAGTTAAAAGATCAAAAT+AGG | + | chr4_3:53023687-53023706 | None:intergenic | 20.0% |
| !! | CTGAAATATTAGACATATTA+CGG | + | chr4_3:53023808-53023827 | None:intergenic | 20.0% |
| ! | ATAACAGAAGAAACATATTG+AGG | + | chr4_3:53023596-53023615 | None:intergenic | 25.0% |
| ! | GTATCTCTTGTACTTATTAT+TGG | + | chr4_3:53023767-53023786 | None:intergenic | 25.0% |
| ! | CGTAATATGTCTAATATTTC+AGG | - | chr4_3:53023806-53023825 | Msa0647060:intron | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | + | chr4_3:53023927-53023946 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | - | chr4_3:53023926-53023945 | Msa0647060:CDS | 25.0% |
| ! | ATAACAGAAGAAACATATTG+AGG | + | chr4_3:53023596-53023615 | None:intergenic | 25.0% |
| ! | GTATCTCTTGTACTTATTAT+TGG | + | chr4_3:53023767-53023786 | None:intergenic | 25.0% |
| ! | CGTAATATGTCTAATATTTC+AGG | - | chr4_3:53023806-53023825 | Msa0647060:intron | 25.0% |
| ! | AATTTCTACACTTGTTTGAT+AGG | + | chr4_3:53023927-53023946 | None:intergenic | 25.0% |
| ! | TATCAAACAAGTGTAGAAAT+TGG | - | chr4_3:53023926-53023945 | Msa0647060:CDS | 25.0% |
| TTCTGATGAGTTCAAATTTC+CGG | - | chr4_3:53023829-53023848 | Msa0647060:intron | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | - | chr4_3:53023962-53023981 | Msa0647060:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | + | chr4_3:53023988-53024007 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | + | chr4_3:53024020-53024039 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | + | chr4_3:53024021-53024040 | None:intergenic | 30.0% |
| CCTAATTGTGTTGAATACAT+GGG | + | chr4_3:53023264-53023283 | None:intergenic | 30.0% | |
| TTCTGATGAGTTCAAATTTC+CGG | - | chr4_3:53023829-53023848 | Msa0647060:intron | 30.0% | |
| AGTGGTATTCTTTATGATCA+AGG | - | chr4_3:53023962-53023981 | Msa0647060:CDS | 30.0% | |
| !! | TATTGAAGCTTTGTTGATCA+GGG | + | chr4_3:53023988-53024007 | None:intergenic | 30.0% |
| ! | AAGATTTTGTTGCTGATCAA+GGG | + | chr4_3:53024020-53024039 | None:intergenic | 30.0% |
| ! | TAAGATTTTGTTGCTGATCA+AGG | + | chr4_3:53024021-53024040 | None:intergenic | 30.0% |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | - | chr4_3:53023281-53023300 | Msa0647060:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | - | chr4_3:53023282-53023301 | Msa0647060:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | - | chr4_3:53023363-53023382 | Msa0647060:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | + | chr4_3:53023398-53023417 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | - | chr4_3:53023397-53023416 | Msa0647060:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | - | chr4_3:53023469-53023488 | Msa0647060:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | + | chr4_3:53023476-53023495 | None:intergenic | 35.0% |
| ! | AATGAACTATTTAGGGCTCT+TGG | + | chr4_3:53023568-53023587 | None:intergenic | 35.0% |
| CTCTTGTACTTATTATTGGC+CGG | + | chr4_3:53023763-53023782 | None:intergenic | 35.0% | |
| TTACGGTTGTGATTAGGATA+TGG | + | chr4_3:53023791-53023810 | None:intergenic | 35.0% | |
| GACATATTACGGTTGTGATT+AGG | + | chr4_3:53023797-53023816 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | - | chr4_3:53023929-53023948 | Msa0647060:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | - | chr4_3:53023944-53023963 | Msa0647060:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | + | chr4_3:53023989-53024008 | None:intergenic | 35.0% |
| CCCTAATTGTGTTGAATACA+TGG | + | chr4_3:53023265-53023284 | None:intergenic | 35.0% | |
| !! | AGGGAAAGAAGAAGTGTTAA+AGG | - | chr4_3:53023281-53023300 | Msa0647060:CDS | 35.0% |
| !! | GGGAAAGAAGAAGTGTTAAA+GGG | - | chr4_3:53023282-53023301 | Msa0647060:CDS | 35.0% |
| AGAAGTTGCTGCAAAAACAA+AGG | - | chr4_3:53023363-53023382 | Msa0647060:CDS | 35.0% | |
| AAGTGCTTCTGATATGTGTT+TGG | + | chr4_3:53023398-53023417 | None:intergenic | 35.0% | |
| !! | AAACACATATCAGAAGCACT+TGG | - | chr4_3:53023397-53023416 | Msa0647060:CDS | 35.0% |
| ACCACCTTCATGAACATAAA+AGG | - | chr4_3:53023469-53023488 | Msa0647060:CDS | 35.0% | |
| ! | TGTGCCTTTTATGTTCATGA+AGG | + | chr4_3:53023476-53023495 | None:intergenic | 35.0% |
| ! | AATGAACTATTTAGGGCTCT+TGG | + | chr4_3:53023568-53023587 | None:intergenic | 35.0% |
| CTCTTGTACTTATTATTGGC+CGG | + | chr4_3:53023763-53023782 | None:intergenic | 35.0% | |
| TTACGGTTGTGATTAGGATA+TGG | + | chr4_3:53023791-53023810 | None:intergenic | 35.0% | |
| GACATATTACGGTTGTGATT+AGG | + | chr4_3:53023797-53023816 | None:intergenic | 35.0% | |
| CAAACAAGTGTAGAAATTGG+AGG | - | chr4_3:53023929-53023948 | Msa0647060:CDS | 35.0% | |
| ATTGGAGGACATGTATTTAG+TGG | - | chr4_3:53023944-53023963 | Msa0647060:CDS | 35.0% | |
| !! | GTATTGAAGCTTTGTTGATC+AGG | + | chr4_3:53023989-53024008 | None:intergenic | 35.0% |
| ! | GTCTGAAATGTCAAGACTGT+GGG | - | chr4_3:53023304-53023323 | Msa0647060:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | + | chr4_3:53023332-53023351 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | - | chr4_3:53023337-53023356 | Msa0647060:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | + | chr4_3:53023473-53023492 | None:intergenic | 40.0% |
| TGTACTTATTATTGGCCGGA+GGG | + | chr4_3:53023759-53023778 | None:intergenic | 40.0% | |
| TTGTACTTATTATTGGCCGG+AGG | + | chr4_3:53023760-53023779 | None:intergenic | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | - | chr4_3:53023901-53023920 | Msa0647060:intron | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | - | chr4_3:53024049-53024068 | Msa0647060:CDS | 40.0% | |
| ! | GTCTGAAATGTCAAGACTGT+GGG | - | chr4_3:53023304-53023323 | Msa0647060:CDS | 40.0% |
| ATGCACAATCCTTCTTTGCT+TGG | + | chr4_3:53023332-53023351 | None:intergenic | 40.0% | |
| AGAAGGATTGTGCATACTCA+AGG | - | chr4_3:53023337-53023356 | Msa0647060:CDS | 40.0% | |
| ! | GCCTTTTATGTTCATGAAGG+TGG | + | chr4_3:53023473-53023492 | None:intergenic | 40.0% |
| TGTACTTATTATTGGCCGGA+GGG | + | chr4_3:53023759-53023778 | None:intergenic | 40.0% | |
| TTGTACTTATTATTGGCCGG+AGG | + | chr4_3:53023760-53023779 | None:intergenic | 40.0% | |
| GGACGAAACGGTTAATGAAA+CGG | - | chr4_3:53023901-53023920 | Msa0647060:intron | 40.0% | |
| AGTAGTAATGCAATCCACAC+AGG | - | chr4_3:53024049-53024068 | Msa0647060:CDS | 40.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | - | chr4_3:53023303-53023322 | Msa0647060:CDS | 45.0% |
| CATTCTGTGACGCCTTCTAT+CGG | + | chr4_3:53023430-53023449 | None:intergenic | 45.0% | |
| AACACATGTCAATGTGGCCA+TGG | + | chr4_3:53023867-53023886 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | + | chr4_3:53023873-53023892 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | - | chr4_3:53024082-53024101 | Msa0647060:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | + | chr4_3:53024145-53024164 | None:intergenic | 45.0% | |
| ! | GGTCTGAAATGTCAAGACTG+TGG | - | chr4_3:53023303-53023322 | Msa0647060:CDS | 45.0% |
| CATTCTGTGACGCCTTCTAT+CGG | + | chr4_3:53023430-53023449 | None:intergenic | 45.0% | |
| AACACATGTCAATGTGGCCA+TGG | + | chr4_3:53023867-53023886 | None:intergenic | 45.0% | |
| CACCTGAACACATGTCAATG+TGG | + | chr4_3:53023873-53023892 | None:intergenic | 45.0% | |
| GCAAGTGCAAGTGCAACTAT+AGG | - | chr4_3:53024082-53024101 | Msa0647060:CDS | 45.0% | |
| CTGAAAGATGGCAATGGATG+CGG | + | chr4_3:53024145-53024164 | None:intergenic | 45.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | - | chr4_3:53023320-53023339 | Msa0647060:CDS | 50.0% | |
| CTTGGATTCCTGCCGATAGA+AGG | - | chr4_3:53023415-53023434 | Msa0647060:CDS | 50.0% | |
| !! | CGATAGAAGGCGTCACAGAA+TGG | - | chr4_3:53023428-53023447 | Msa0647060:CDS | 50.0% |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | + | chr4_3:53023459-53023478 | None:intergenic | 50.0% |
| TCTTCCTACTTCCATCCCTC+CGG | - | chr4_3:53023741-53023760 | Msa0647060:intron | 50.0% | |
| CTTATTATTGGCCGGAGGGA+TGG | + | chr4_3:53023755-53023774 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | - | chr4_3:53023868-53023887 | Msa0647060:intron | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | - | chr4_3:53023880-53023899 | Msa0647060:intron | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | - | chr4_3:53024058-53024077 | Msa0647060:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | + | chr4_3:53024066-53024085 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | + | chr4_3:53024142-53024161 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | - | chr4_3:53024143-53024162 | Msa0647060:CDS | 50.0% | |
| CTGTGGGAACCAAGCAAAGA+AGG | - | chr4_3:53023320-53023339 | Msa0647060:CDS | 50.0% | |
| CTTGGATTCCTGCCGATAGA+AGG | - | chr4_3:53023415-53023434 | Msa0647060:CDS | 50.0% | |
| !! | CGATAGAAGGCGTCACAGAA+TGG | - | chr4_3:53023428-53023447 | Msa0647060:CDS | 50.0% |
| !! | TGAAGGTGGTGCTGATCAGA+AGG | + | chr4_3:53023459-53023478 | None:intergenic | 50.0% |
| TCTTCCTACTTCCATCCCTC+CGG | - | chr4_3:53023741-53023760 | Msa0647060:intron | 50.0% | |
| CTTATTATTGGCCGGAGGGA+TGG | + | chr4_3:53023755-53023774 | None:intergenic | 50.0% | |
| GGCCACATTGACATGTGTTC+AGG | - | chr4_3:53023868-53023887 | Msa0647060:intron | 50.0% | |
| ATGTGTTCAGGTGCGCTCTA+TGG | - | chr4_3:53023880-53023899 | Msa0647060:intron | 50.0% | |
| GCAATCCACACAGGTGATGA+TGG | - | chr4_3:53024058-53024077 | Msa0647060:CDS | 50.0% | |
| TTGCACCATCATCACCTGTG+TGG | + | chr4_3:53024066-53024085 | None:intergenic | 50.0% | |
| AAAGATGGCAATGGATGCGG+TGG | + | chr4_3:53024142-53024161 | None:intergenic | 50.0% | |
| CGCATCCATTGCCATCTTTC+AGG | - | chr4_3:53024143-53024162 | Msa0647060:CDS | 50.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | + | chr4_3:53023455-53023474 | None:intergenic | 55.0% |
| TCCGGCTGTTACGAGTTCCA+TGG | - | chr4_3:53023847-53023866 | Msa0647060:intron | 55.0% | |
| GCCATGGAACTCGTAACAGC+CGG | + | chr4_3:53023851-53023870 | None:intergenic | 55.0% | |
| GGTGCGCTCTATGGACGAAA+CGG | - | chr4_3:53023889-53023908 | Msa0647060:intron | 55.0% | |
| !! | GGTGGTGCTGATCAGAAGGA+TGG | + | chr4_3:53023455-53023474 | None:intergenic | 55.0% |
| TCCGGCTGTTACGAGTTCCA+TGG | - | chr4_3:53023847-53023866 | Msa0647060:intron | 55.0% | |
| GCCATGGAACTCGTAACAGC+CGG | + | chr4_3:53023851-53023870 | None:intergenic | 55.0% | |
| GGTGCGCTCTATGGACGAAA+CGG | - | chr4_3:53023889-53023908 | Msa0647060:intron | 55.0% | |
| CTGTGACGCCTTCTATCGGC+AGG | + | chr4_3:53023426-53023445 | None:intergenic | 60.0% | |
| TTGGCCGGAGGGATGGAAGT+AGG | + | chr4_3:53023748-53023767 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | + | chr4_3:53024139-53024158 | None:intergenic | 60.0% | |
| CTGTGACGCCTTCTATCGGC+AGG | + | chr4_3:53023426-53023445 | None:intergenic | 60.0% | |
| TTGGCCGGAGGGATGGAAGT+AGG | + | chr4_3:53023748-53023767 | None:intergenic | 60.0% | |
| GATGGCAATGGATGCGGTGG+AGG | + | chr4_3:53024139-53024158 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53023264 | 53024168 | 53023264 | ID=Msa0647060;Name=Msa0647060 |
| chr4_3 | mRNA | 53023264 | 53024168 | 53023264 | ID=Msa0647060-mRNA-1;Parent=Msa0647060;Name=Msa0647060-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|1|0|1|1|0.5|2|0|198 |
| chr4_3 | exon | 53023916 | 53024168 | 53023916 | ID=Msa0647060-mRNA-1:exon:13121;Parent=Msa0647060-mRNA-1 |
| chr4_3 | exon | 53023264 | 53023604 | 53023264 | ID=Msa0647060-mRNA-1:exon:13120;Parent=Msa0647060-mRNA-1 |
| chr4_3 | CDS | 53023916 | 53024168 | 53023916 | ID=Msa0647060-mRNA-1:cds;Parent=Msa0647060-mRNA-1 |
| chr4_3 | CDS | 53023264 | 53023604 | 53023264 | ID=Msa0647060-mRNA-1:cds;Parent=Msa0647060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
