Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647290 | XP_003607180.1 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647290 | sp|Q8GTS2|BZP23_ARATH | 60.920 | 261 | 82 | 6 | 1 | 260 | 1 | 242 | 1.20e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647290 | B7FIL7 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0647290 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0647290 | Msa0686820 | 0.971400 | 4.189671e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647290 | MtrunA17_Chr4g0036971 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 0.0 | 533 |
| Msa0647290 | MtrunA17_Chr3g0090531 | 41.089 | 202 | 95 | 4 | 1 | 197 | 1 | 183 | 7.02e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647290 | AT2G16770.2 | 60.920 | 261 | 82 | 6 | 1 | 260 | 1 | 242 | 1.22e-106 | 309 |
| Msa0647290 | AT2G16770.1 | 60.920 | 261 | 82 | 6 | 1 | 260 | 1 | 242 | 1.22e-106 | 309 |
| Msa0647290 | AT4G35040.1 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0647290 | AT4G35040.4 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0647290 | AT4G35040.2 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0647290 | AT4G35040.3 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0647290 | AT3G51960.3 | 54.478 | 134 | 54 | 3 | 39 | 171 | 13 | 140 | 1.76e-45 | 151 |
| Msa0647290 | AT3G51960.2 | 54.478 | 134 | 54 | 3 | 39 | 171 | 52 | 179 | 4.45e-45 | 151 |
| Msa0647290 | AT3G51960.1 | 52.239 | 134 | 56 | 2 | 39 | 171 | 52 | 178 | 1.17e-43 | 148 |
Find 78 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGGATTGAAGGGGAAAT+TGG | 0.206995 | 4_3:-53264818 | Msa0647290:CDS |
| GTGTTTGTTGGTTGATATTA+GGG | 0.255056 | 4_3:-53264840 | Msa0647290:CDS |
| CCCAACCGGTCGCTTCTTAC+TGG | 0.266035 | 4_3:+53265015 | None:intergenic |
| GATCCTTGAGCCCCAAATTC+TGG | 0.270466 | 4_3:+53264594 | None:intergenic |
| AGTGTTTGTTGGTTGATATT+AGG | 0.273430 | 4_3:-53264841 | Msa0647290:CDS |
| GTGTATGGGAGGCCAGAATT+TGG | 0.299733 | 4_3:-53264606 | Msa0647290:CDS |
| TGTATGGGAGGCCAGAATTT+GGG | 0.316343 | 4_3:-53264605 | Msa0647290:CDS |
| GTTGCAAGGGCAGGCTGCTT+TGG | 0.335855 | 4_3:-53264885 | Msa0647290:CDS |
| GTTTGAAATTCAGCCATGTT+TGG | 0.367715 | 4_3:+53265232 | None:intergenic |
| CCGAATGAGGATGGATTTGA+TGG | 0.369232 | 4_3:-53264650 | Msa0647290:CDS |
| CTCAAGGATCTTCGTGGTTG+TGG | 0.376487 | 4_3:-53264581 | Msa0647290:CDS |
| GGAGGATTGAAGGGGAAATT+GGG | 0.382575 | 4_3:-53264817 | Msa0647290:CDS |
| ATTTCAAACAAGTGGTTCAA+TGG | 0.405614 | 4_3:-53265218 | Msa0647290:CDS |
| GTTTGAGAGTCTCCAGTGTA+TGG | 0.417641 | 4_3:-53264621 | Msa0647290:CDS |
| TGCGAGGTTGAAGTGTTTGT+TGG | 0.420725 | 4_3:-53264852 | Msa0647290:CDS |
| GCAAGGGCAGGCTGCTTTGG+AGG | 0.426440 | 4_3:-53264882 | Msa0647290:CDS |
| GGCTGCGTCGTTGGAGGATG+AGG | 0.428168 | 4_3:-53264948 | Msa0647290:CDS |
| TCATCACACTGCACATTACA+AGG | 0.429810 | 4_3:+53264725 | None:intergenic |
| GATCTTCGTGGTTGTGGAGG+TGG | 0.440100 | 4_3:-53264575 | Msa0647290:CDS |
| ACCGCCTCTTTATTCCCAAC+CGG | 0.455765 | 4_3:+53265001 | None:intergenic |
| TCAGCAGCAATCTTCCCATC+TGG | 0.456534 | 4_3:+53264683 | None:intergenic |
| ACATTCGCGGGTTTCTGATA+CGG | 0.475335 | 4_3:+53264788 | None:intergenic |
| GAAAGCTAGGGCTGCGTCGT+TGG | 0.478279 | 4_3:-53264957 | Msa0647290:CDS |
| TCGTGGTTGTGGAGGTGGAC+CGG | 0.485043 | 4_3:-53264570 | Msa0647290:CDS |
| CCATCAAATCCATCCTCATT+CGG | 0.488283 | 4_3:+53264650 | None:intergenic |
| AGCTAGGGCTGCGTCGTTGG+AGG | 0.489293 | 4_3:-53264954 | Msa0647290:CDS |
| CTGCTGAAGATGATCAGGTT+GGG | 0.489651 | 4_3:-53265072 | Msa0647290:CDS |
| AGGCCAGAATTTGGGGCTCA+AGG | 0.491612 | 4_3:-53264597 | Msa0647290:CDS |
| CAAGCTTCCAGTAAAAGAAA+AGG | 0.495698 | 4_3:-53264527 | Msa0647290:CDS |
| ATCTTCAGCAGGGACAATCT+TGG | 0.499105 | 4_3:+53265084 | None:intergenic |
| TTGGGGCTCAAGGATCTTCG+TGG | 0.500226 | 4_3:-53264587 | Msa0647290:CDS |
| GGGTTCATCACATGAGAGCC+AGG | 0.513240 | 4_3:+53264746 | None:intergenic |
| GCATATTGCCTTCGTCCAGA+TGG | 0.514127 | 4_3:-53264698 | Msa0647290:CDS |
| TGTCCCTGCTGAAGATGATC+AGG | 0.516014 | 4_3:-53265077 | Msa0647290:CDS |
| CCAGTAAGAAGCGACCGGTT+GGG | 0.517346 | 4_3:-53265015 | Msa0647290:CDS |
| ATCGTGAGAAGAAGAAAGCT+AGG | 0.518063 | 4_3:-53264970 | Msa0647290:CDS |
| TAATGTGCAGTGTGATGATC+GGG | 0.521659 | 4_3:-53264720 | Msa0647290:CDS |
| CTTTGGAGGCCGAAGTTGCG+AGG | 0.525689 | 4_3:-53264868 | Msa0647290:CDS |
| CCAACCTGATCATCTTCAGC+AGG | 0.525807 | 4_3:+53265073 | None:intergenic |
| GATGAGGAAGTTGCAAGGGC+AGG | 0.525833 | 4_3:-53264894 | Msa0647290:CDS |
| TCCAGTAAGAAGCGACCGGT+TGG | 0.526553 | 4_3:-53265016 | Msa0647290:CDS |
| AGGATGAGGTCATGAAATTG+AGG | 0.534541 | 4_3:-53264934 | Msa0647290:CDS |
| ATCGCGGGATTCACATTCGC+GGG | 0.538798 | 4_3:+53264776 | None:intergenic |
| CATATTGCCTTCGTCCAGAT+GGG | 0.548979 | 4_3:-53264697 | Msa0647290:CDS |
| AATTCTGGCCTCCCATACAC+TGG | 0.551814 | 4_3:+53264609 | None:intergenic |
| ATGGCTGAATTTCAAACAAG+TGG | 0.554218 | 4_3:-53265226 | Msa0647290:CDS |
| GACCAGGTGGGTTACACGTG+TGG | 0.559695 | 4_3:+53265146 | None:intergenic |
| AATCCCGCGATGAATTTGCC+TGG | 0.562632 | 4_3:-53264764 | Msa0647290:CDS |
| ACACTTCAACCTCGCAACTT+CGG | 0.570082 | 4_3:+53264859 | None:intergenic |
| GTTTGTTGGTTGATATTAGG+GGG | 0.578395 | 4_3:-53264838 | Msa0647290:CDS |
| GGATGAGGTCATGAAATTGA+GGG | 0.578672 | 4_3:-53264933 | Msa0647290:CDS |
| ACACGTGTGGGTATGAGTAC+AGG | 0.580524 | 4_3:+53265159 | None:intergenic |
| TGTTTGTTGGTTGATATTAG+GGG | 0.581606 | 4_3:-53264839 | Msa0647290:CDS |
| GTAATGTGCAGTGTGATGAT+CGG | 0.581966 | 4_3:-53264721 | Msa0647290:CDS |
| GAAGTCCAGTAAGAAGCGAC+CGG | 0.585566 | 4_3:-53265020 | Msa0647290:CDS |
| TTTGAGAGTCTCCAGTGTAT+GGG | 0.588557 | 4_3:-53264620 | Msa0647290:CDS |
| TGAAGTGGCGTTGCCGAATG+AGG | 0.594233 | 4_3:-53264663 | Msa0647290:CDS |
| GTATGGGAGGCCAGAATTTG+GGG | 0.595109 | 4_3:-53264604 | Msa0647290:CDS |
| ATTTGATGAGGAAGTTGCAA+GGG | 0.596253 | 4_3:-53264898 | Msa0647290:CDS |
| GTGGCGTTGCCGAATGAGGA+TGG | 0.599193 | 4_3:-53264659 | Msa0647290:CDS |
| CATCGCGGGATTCACATTCG+CGG | 0.599241 | 4_3:+53264775 | None:intergenic |
| AAGGATCTTCGTGGTTGTGG+AGG | 0.602836 | 4_3:-53264578 | Msa0647290:CDS |
| CATTTGATGAGGAAGTTGCA+AGG | 0.604562 | 4_3:-53264899 | Msa0647290:CDS |
| ACCCACACGTGTAACCCACC+TGG | 0.607124 | 4_3:-53265148 | Msa0647290:CDS |
| ACCAGGTGGGTTACACGTGT+GGG | 0.610384 | 4_3:+53265147 | None:intergenic |
| GAGCCAGGCAAATTCATCGC+GGG | 0.610422 | 4_3:+53264761 | None:intergenic |
| TCGTGAGAAGAAGAAAGCTA+GGG | 0.612179 | 4_3:-53264969 | Msa0647290:CDS |
| TGGGAAGATTGCTGCTGAAG+TGG | 0.614233 | 4_3:-53264678 | Msa0647290:CDS |
| CTTTGAATCAGCATTTGATG+AGG | 0.616238 | 4_3:-53264910 | Msa0647290:CDS |
| CAATCTTCCCATCTGGACGA+AGG | 0.622375 | 4_3:+53264690 | None:intergenic |
| CCTGCTGAAGATGATCAGGT+TGG | 0.627520 | 4_3:-53265073 | Msa0647290:CDS |
| GAGAGTCTCCAGTGTATGGG+AGG | 0.629740 | 4_3:-53264617 | Msa0647290:CDS |
| GCGACCGGTTGGGAATAAAG+AGG | 0.649541 | 4_3:-53265005 | Msa0647290:CDS |
| CAACCTGATCATCTTCAGCA+GGG | 0.684116 | 4_3:+53265074 | None:intergenic |
| ACCGGTTGGGAATAAAGAGG+CGG | 0.690479 | 4_3:-53265002 | Msa0647290:CDS |
| CATCACACTGCACATTACAA+GGG | 0.696358 | 4_3:+53264726 | None:intergenic |
| AGAGCCAGGCAAATTCATCG+CGG | 0.740100 | 4_3:+53264760 | None:intergenic |
| GAATTGACATTAGACAACGC+CGG | 0.756510 | 4_3:+53264551 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGATGAATTGTTGA+AGG | - | chr4_3:53264606-53264625 | Msa0647290:CDS | 20.0% |
| !!! | TTTTTTTGATGAATTGTTGA+AGG | - | chr4_3:53264606-53264625 | Msa0647290:CDS | 20.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | - | chr4_3:53264579-53264598 | Msa0647290:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATT+AGG | - | chr4_3:53264956-53264975 | Msa0647290:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATTA+GGG | - | chr4_3:53264957-53264976 | Msa0647290:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATTAG+GGG | - | chr4_3:53264958-53264977 | Msa0647290:CDS | 30.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | - | chr4_3:53264579-53264598 | Msa0647290:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATT+AGG | - | chr4_3:53264956-53264975 | Msa0647290:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATTA+GGG | - | chr4_3:53264957-53264976 | Msa0647290:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATTAG+GGG | - | chr4_3:53264958-53264977 | Msa0647290:CDS | 30.0% |
| ! | GTTTGAAATTCAGCCATGTT+TGG | + | chr4_3:53264568-53264587 | None:intergenic | 35.0% |
| ATGGCTGAATTTCAAACAAG+TGG | - | chr4_3:53264571-53264590 | Msa0647290:CDS | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | - | chr4_3:53264887-53264906 | Msa0647290:CDS | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | - | chr4_3:53264899-53264918 | Msa0647290:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATTAGG+GGG | - | chr4_3:53264959-53264978 | Msa0647290:CDS | 35.0% |
| CAAGCTTCCAGTAAAAGAAA+AGG | - | chr4_3:53265270-53265289 | Msa0647290:CDS | 35.0% | |
| ! | GTCATCACCTTTTCTTTTAC+TGG | + | chr4_3:53265280-53265299 | None:intergenic | 35.0% |
| ! | GTTTGAAATTCAGCCATGTT+TGG | + | chr4_3:53264568-53264587 | None:intergenic | 35.0% |
| ATGGCTGAATTTCAAACAAG+TGG | - | chr4_3:53264571-53264590 | Msa0647290:CDS | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | - | chr4_3:53264887-53264906 | Msa0647290:CDS | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | - | chr4_3:53264899-53264918 | Msa0647290:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATTAGG+GGG | - | chr4_3:53264959-53264978 | Msa0647290:CDS | 35.0% |
| CAAGCTTCCAGTAAAAGAAA+AGG | - | chr4_3:53265270-53265289 | Msa0647290:CDS | 35.0% | |
| ! | GTCATCACCTTTTCTTTTAC+TGG | + | chr4_3:53265280-53265299 | None:intergenic | 35.0% |
| GTGTGAGTGTGTGAAAAATC+AGG | + | chr4_3:53264676-53264695 | None:intergenic | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | - | chr4_3:53264827-53264846 | Msa0647290:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | - | chr4_3:53264828-53264847 | Msa0647290:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | - | chr4_3:53264863-53264882 | Msa0647290:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | - | chr4_3:53264864-53264883 | Msa0647290:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | - | chr4_3:53264898-53264917 | Msa0647290:CDS | 40.0% | |
| ATATTAGGGGGAGGATTGAA+GGG | - | chr4_3:53264971-53264990 | Msa0647290:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | + | chr4_3:53265074-53265093 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | + | chr4_3:53265075-53265094 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | - | chr4_3:53265076-53265095 | Msa0647290:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | - | chr4_3:53265077-53265096 | Msa0647290:CDS | 40.0% | |
| CCATCAAATCCATCCTCATT+CGG | + | chr4_3:53265150-53265169 | None:intergenic | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | - | chr4_3:53265177-53265196 | Msa0647290:CDS | 40.0% | |
| GAATTGACATTAGACAACGC+CGG | + | chr4_3:53265249-53265268 | None:intergenic | 40.0% | |
| GTGTGAGTGTGTGAAAAATC+AGG | + | chr4_3:53264676-53264695 | None:intergenic | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | - | chr4_3:53264827-53264846 | Msa0647290:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | - | chr4_3:53264828-53264847 | Msa0647290:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | - | chr4_3:53264863-53264882 | Msa0647290:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | - | chr4_3:53264864-53264883 | Msa0647290:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | - | chr4_3:53264898-53264917 | Msa0647290:CDS | 40.0% | |
| ATATTAGGGGGAGGATTGAA+GGG | - | chr4_3:53264971-53264990 | Msa0647290:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | + | chr4_3:53265074-53265093 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | + | chr4_3:53265075-53265094 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | - | chr4_3:53265076-53265095 | Msa0647290:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | - | chr4_3:53265077-53265096 | Msa0647290:CDS | 40.0% | |
| CCATCAAATCCATCCTCATT+CGG | + | chr4_3:53265150-53265169 | None:intergenic | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | - | chr4_3:53265177-53265196 | Msa0647290:CDS | 40.0% | |
| GAATTGACATTAGACAACGC+CGG | + | chr4_3:53265249-53265268 | None:intergenic | 40.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | - | chr4_3:53264552-53264571 | Msa0647290:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | + | chr4_3:53264666-53264685 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | + | chr4_3:53264667-53264686 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | + | chr4_3:53264670-53264689 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | + | chr4_3:53264716-53264735 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | + | chr4_3:53264726-53264745 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | - | chr4_3:53264725-53264744 | Msa0647290:CDS | 45.0% | |
| ACACTTCAACCTCGCAACTT+CGG | + | chr4_3:53264941-53264960 | None:intergenic | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | - | chr4_3:53264945-53264964 | Msa0647290:CDS | 45.0% |
| ! | TGTTGGTTGATATTAGGGGG+AGG | - | chr4_3:53264962-53264981 | Msa0647290:CDS | 45.0% |
| GATATTAGGGGGAGGATTGA+AGG | - | chr4_3:53264970-53264989 | Msa0647290:CDS | 45.0% | |
| TATTAGGGGGAGGATTGAAG+GGG | - | chr4_3:53264972-53264991 | Msa0647290:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | - | chr4_3:53264980-53264999 | Msa0647290:CDS | 45.0% | |
| ACATTCGCGGGTTTCTGATA+CGG | + | chr4_3:53265012-53265031 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | - | chr4_3:53265100-53265119 | Msa0647290:CDS | 45.0% | |
| ! | CCGAATGAGGATGGATTTGA+TGG | - | chr4_3:53265147-53265166 | Msa0647290:CDS | 45.0% |
| GTTTGAGAGTCTCCAGTGTA+TGG | - | chr4_3:53265176-53265195 | Msa0647290:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | - | chr4_3:53265192-53265211 | Msa0647290:CDS | 45.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | - | chr4_3:53264552-53264571 | Msa0647290:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | + | chr4_3:53264666-53264685 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | + | chr4_3:53264667-53264686 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | + | chr4_3:53264670-53264689 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | + | chr4_3:53264716-53264735 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | + | chr4_3:53264726-53264745 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | - | chr4_3:53264725-53264744 | Msa0647290:CDS | 45.0% | |
| ACACTTCAACCTCGCAACTT+CGG | + | chr4_3:53264941-53264960 | None:intergenic | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | - | chr4_3:53264945-53264964 | Msa0647290:CDS | 45.0% |
| ! | TGTTGGTTGATATTAGGGGG+AGG | - | chr4_3:53264962-53264981 | Msa0647290:CDS | 45.0% |
| GATATTAGGGGGAGGATTGA+AGG | - | chr4_3:53264970-53264989 | Msa0647290:CDS | 45.0% | |
| TATTAGGGGGAGGATTGAAG+GGG | - | chr4_3:53264972-53264991 | Msa0647290:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | - | chr4_3:53264980-53264999 | Msa0647290:CDS | 45.0% | |
| ACATTCGCGGGTTTCTGATA+CGG | + | chr4_3:53265012-53265031 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | - | chr4_3:53265100-53265119 | Msa0647290:CDS | 45.0% | |
| ! | CCGAATGAGGATGGATTTGA+TGG | - | chr4_3:53265147-53265166 | Msa0647290:CDS | 45.0% |
| GTTTGAGAGTCTCCAGTGTA+TGG | - | chr4_3:53265176-53265195 | Msa0647290:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | - | chr4_3:53265192-53265211 | Msa0647290:CDS | 45.0% | |
| ACACGTGTGGGTATGAGTAC+AGG | + | chr4_3:53264641-53264660 | None:intergenic | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | - | chr4_3:53264720-53264739 | Msa0647290:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | + | chr4_3:53264727-53264746 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | - | chr4_3:53264724-53264743 | Msa0647290:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | - | chr4_3:53264777-53264796 | Msa0647290:CDS | 50.0% | |
| ACCGGTTGGGAATAAAGAGG+CGG | - | chr4_3:53264795-53264814 | Msa0647290:CDS | 50.0% | |
| ACCGCCTCTTTATTCCCAAC+CGG | + | chr4_3:53264799-53264818 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | - | chr4_3:53264979-53264998 | Msa0647290:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | - | chr4_3:53265033-53265052 | Msa0647290:CDS | 50.0% | |
| AGAGCCAGGCAAATTCATCG+CGG | + | chr4_3:53265040-53265059 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | - | chr4_3:53265099-53265118 | Msa0647290:CDS | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | + | chr4_3:53265110-53265129 | None:intergenic | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | + | chr4_3:53265117-53265136 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | - | chr4_3:53265119-53265138 | Msa0647290:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | + | chr4_3:53265191-53265210 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | - | chr4_3:53265191-53265210 | Msa0647290:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | - | chr4_3:53265193-53265212 | Msa0647290:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | + | chr4_3:53265206-53265225 | None:intergenic | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | - | chr4_3:53265216-53265235 | Msa0647290:CDS | 50.0% | |
| AAGGATCTTCGTGGTTGTGG+AGG | - | chr4_3:53265219-53265238 | Msa0647290:CDS | 50.0% | |
| ACACGTGTGGGTATGAGTAC+AGG | + | chr4_3:53264641-53264660 | None:intergenic | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | - | chr4_3:53264720-53264739 | Msa0647290:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | + | chr4_3:53264727-53264746 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | - | chr4_3:53264724-53264743 | Msa0647290:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | - | chr4_3:53264777-53264796 | Msa0647290:CDS | 50.0% | |
| ACCGGTTGGGAATAAAGAGG+CGG | - | chr4_3:53264795-53264814 | Msa0647290:CDS | 50.0% | |
| ACCGCCTCTTTATTCCCAAC+CGG | + | chr4_3:53264799-53264818 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | - | chr4_3:53264979-53264998 | Msa0647290:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | - | chr4_3:53265033-53265052 | Msa0647290:CDS | 50.0% | |
| AGAGCCAGGCAAATTCATCG+CGG | + | chr4_3:53265040-53265059 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | - | chr4_3:53265099-53265118 | Msa0647290:CDS | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | + | chr4_3:53265110-53265129 | None:intergenic | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | + | chr4_3:53265117-53265136 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | - | chr4_3:53265119-53265138 | Msa0647290:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | + | chr4_3:53265191-53265210 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | - | chr4_3:53265191-53265210 | Msa0647290:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | - | chr4_3:53265193-53265212 | Msa0647290:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | + | chr4_3:53265206-53265225 | None:intergenic | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | - | chr4_3:53265216-53265235 | Msa0647290:CDS | 50.0% | |
| AAGGATCTTCGTGGTTGTGG+AGG | - | chr4_3:53265219-53265238 | Msa0647290:CDS | 50.0% | |
| !! | ACCAGGTGGGTTACACGTGT+GGG | + | chr4_3:53264653-53264672 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | - | chr4_3:53264781-53264800 | Msa0647290:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | - | chr4_3:53264782-53264801 | Msa0647290:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | - | chr4_3:53264792-53264811 | Msa0647290:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | - | chr4_3:53264903-53264922 | Msa0647290:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+GGG | + | chr4_3:53265024-53265043 | None:intergenic | 55.0% | |
| CATCGCGGGATTCACATTCG+CGG | + | chr4_3:53265025-53265044 | None:intergenic | 55.0% | |
| GAGCCAGGCAAATTCATCGC+GGG | + | chr4_3:53265039-53265058 | None:intergenic | 55.0% | |
| GGGTTCATCACATGAGAGCC+AGG | + | chr4_3:53265054-53265073 | None:intergenic | 55.0% | |
| TGAAGTGGCGTTGCCGAATG+AGG | - | chr4_3:53265134-53265153 | Msa0647290:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | - | chr4_3:53265180-53265199 | Msa0647290:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | - | chr4_3:53265200-53265219 | Msa0647290:CDS | 55.0% |
| TTGGGGCTCAAGGATCTTCG+TGG | - | chr4_3:53265210-53265229 | Msa0647290:CDS | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | - | chr4_3:53265222-53265241 | Msa0647290:CDS | 55.0% | |
| !! | ACCAGGTGGGTTACACGTGT+GGG | + | chr4_3:53264653-53264672 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | - | chr4_3:53264781-53264800 | Msa0647290:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | - | chr4_3:53264782-53264801 | Msa0647290:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | - | chr4_3:53264792-53264811 | Msa0647290:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | - | chr4_3:53264903-53264922 | Msa0647290:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+GGG | + | chr4_3:53265024-53265043 | None:intergenic | 55.0% | |
| CATCGCGGGATTCACATTCG+CGG | + | chr4_3:53265025-53265044 | None:intergenic | 55.0% | |
| GAGCCAGGCAAATTCATCGC+GGG | + | chr4_3:53265039-53265058 | None:intergenic | 55.0% | |
| GGGTTCATCACATGAGAGCC+AGG | + | chr4_3:53265054-53265073 | None:intergenic | 55.0% | |
| TGAAGTGGCGTTGCCGAATG+AGG | - | chr4_3:53265134-53265153 | Msa0647290:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | - | chr4_3:53265180-53265199 | Msa0647290:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | - | chr4_3:53265200-53265219 | Msa0647290:CDS | 55.0% |
| TTGGGGCTCAAGGATCTTCG+TGG | - | chr4_3:53265210-53265229 | Msa0647290:CDS | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | - | chr4_3:53265222-53265241 | Msa0647290:CDS | 55.0% | |
| ACCCACACGTGTAACCCACC+TGG | - | chr4_3:53264649-53264668 | Msa0647290:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | + | chr4_3:53264654-53264673 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | + | chr4_3:53264785-53264804 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | - | chr4_3:53264840-53264859 | Msa0647290:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | - | chr4_3:53264912-53264931 | Msa0647290:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | - | chr4_3:53264929-53264948 | Msa0647290:CDS | 60.0% |
| GTGGCGTTGCCGAATGAGGA+TGG | - | chr4_3:53265138-53265157 | Msa0647290:CDS | 60.0% | |
| TCGTGGTTGTGGAGGTGGAC+CGG | - | chr4_3:53265227-53265246 | Msa0647290:CDS | 60.0% | |
| ACCCACACGTGTAACCCACC+TGG | - | chr4_3:53264649-53264668 | Msa0647290:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | + | chr4_3:53264654-53264673 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | + | chr4_3:53264785-53264804 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | - | chr4_3:53264840-53264859 | Msa0647290:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | - | chr4_3:53264912-53264931 | Msa0647290:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | - | chr4_3:53264929-53264948 | Msa0647290:CDS | 60.0% |
| GTGGCGTTGCCGAATGAGGA+TGG | - | chr4_3:53265138-53265157 | Msa0647290:CDS | 60.0% | |
| TCGTGGTTGTGGAGGTGGAC+CGG | - | chr4_3:53265227-53265246 | Msa0647290:CDS | 60.0% | |
| AGCTAGGGCTGCGTCGTTGG+AGG | - | chr4_3:53264843-53264862 | Msa0647290:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | - | chr4_3:53264849-53264868 | Msa0647290:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | - | chr4_3:53264915-53264934 | Msa0647290:CDS | 65.0% |
| AGCTAGGGCTGCGTCGTTGG+AGG | - | chr4_3:53264843-53264862 | Msa0647290:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | - | chr4_3:53264849-53264868 | Msa0647290:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | - | chr4_3:53264915-53264934 | Msa0647290:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 53264517 | 53265302 | 53264517 | ID=Msa0647290;Name=Msa0647290 |
| chr4_3 | mRNA | 53264517 | 53265302 | 53264517 | ID=Msa0647290-mRNA-1;Parent=Msa0647290;Name=Msa0647290-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|261 |
| chr4_3 | exon | 53264517 | 53265302 | 53264517 | ID=Msa0647290-mRNA-1:exon:13302;Parent=Msa0647290-mRNA-1 |
| chr4_3 | CDS | 53264517 | 53265302 | 53264517 | ID=Msa0647290-mRNA-1:cds;Parent=Msa0647290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
