Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686820 | XP_003607180.1 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 0.0 | 533 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686820 | sp|Q8GTS2|BZP23_ARATH | 60.920 | 261 | 82 | 6 | 1 | 260 | 1 | 242 | 1.20e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686820 | B7FIL7 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 0.0 | 533 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0686820 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0647290 | Msa0686820 | 0.971400 | 4.189671e-133 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686820 | MtrunA17_Chr4g0036971 | 98.069 | 259 | 5 | 0 | 1 | 259 | 1 | 259 | 0.0 | 533 |
| Msa0686820 | MtrunA17_Chr3g0090531 | 41.089 | 202 | 95 | 4 | 1 | 197 | 1 | 183 | 7.02e-34 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0686820 | AT2G16770.2 | 60.920 | 261 | 82 | 6 | 1 | 260 | 1 | 242 | 1.22e-106 | 309 |
| Msa0686820 | AT2G16770.1 | 60.920 | 261 | 82 | 6 | 1 | 260 | 1 | 242 | 1.22e-106 | 309 |
| Msa0686820 | AT4G35040.1 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0686820 | AT4G35040.4 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0686820 | AT4G35040.2 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0686820 | AT4G35040.3 | 63.636 | 264 | 80 | 8 | 1 | 259 | 1 | 253 | 4.65e-106 | 308 |
| Msa0686820 | AT3G51960.3 | 54.478 | 134 | 54 | 3 | 39 | 171 | 13 | 140 | 1.76e-45 | 151 |
| Msa0686820 | AT3G51960.2 | 54.478 | 134 | 54 | 3 | 39 | 171 | 52 | 179 | 4.45e-45 | 151 |
| Msa0686820 | AT3G51960.1 | 52.239 | 134 | 56 | 2 | 39 | 171 | 52 | 178 | 1.17e-43 | 148 |
Find 78 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAGGATTGAAGGGGAAAT+TGG | 0.206995 | 4_4:-51442577 | Msa0686820:CDS |
| GTGTTTGTTGGTTGATATTA+GGG | 0.255056 | 4_4:-51442599 | Msa0686820:CDS |
| CCCAACCGGTCGCTTCTTAC+TGG | 0.266035 | 4_4:+51442774 | None:intergenic |
| GATCCTTGAGCCCCAAATTC+TGG | 0.270466 | 4_4:+51442353 | None:intergenic |
| AGTGTTTGTTGGTTGATATT+AGG | 0.273430 | 4_4:-51442600 | Msa0686820:CDS |
| GTGTATGGGAGGCCAGAATT+TGG | 0.299733 | 4_4:-51442365 | Msa0686820:CDS |
| TGTATGGGAGGCCAGAATTT+GGG | 0.316343 | 4_4:-51442364 | Msa0686820:CDS |
| GTTGCAAGGGCAGGCTGCTT+TGG | 0.335855 | 4_4:-51442644 | Msa0686820:CDS |
| GTTTGAAATTCAGCCATGTT+TGG | 0.367715 | 4_4:+51442991 | None:intergenic |
| CCGAATGAGGATGGATTTGA+TGG | 0.369232 | 4_4:-51442409 | Msa0686820:CDS |
| CTCAAGGATCTTCGTGGTTG+TGG | 0.376487 | 4_4:-51442340 | Msa0686820:CDS |
| GGAGGATTGAAGGGGAAATT+GGG | 0.382575 | 4_4:-51442576 | Msa0686820:CDS |
| ATTTCAAACAAGTGGTTCAA+TGG | 0.405614 | 4_4:-51442977 | Msa0686820:CDS |
| GTTTGAGAGTCTCCAGTGTA+TGG | 0.417641 | 4_4:-51442380 | Msa0686820:CDS |
| TGCGAGGTTGAAGTGTTTGT+TGG | 0.420725 | 4_4:-51442611 | Msa0686820:CDS |
| GCAAGGGCAGGCTGCTTTGG+AGG | 0.426440 | 4_4:-51442641 | Msa0686820:CDS |
| GGCTGCGTCGTTGGAGGATG+AGG | 0.428168 | 4_4:-51442707 | Msa0686820:CDS |
| TCATCACACTGCACATTACA+AGG | 0.429810 | 4_4:+51442484 | None:intergenic |
| GATCTTCGTGGTTGTGGAGG+TGG | 0.440100 | 4_4:-51442334 | Msa0686820:CDS |
| ACCGCCTCTTTATTCCCAAC+CGG | 0.455765 | 4_4:+51442760 | None:intergenic |
| TCAGCAGCAATCTTCCCATC+TGG | 0.456534 | 4_4:+51442442 | None:intergenic |
| ACATTCGCGGGTTTCTGATA+CGG | 0.475335 | 4_4:+51442547 | None:intergenic |
| GAAAGCTAGGGCTGCGTCGT+TGG | 0.478279 | 4_4:-51442716 | Msa0686820:CDS |
| TCGTGGTTGTGGAGGTGGAC+CGG | 0.485043 | 4_4:-51442329 | Msa0686820:CDS |
| CCATCAAATCCATCCTCATT+CGG | 0.488283 | 4_4:+51442409 | None:intergenic |
| AGCTAGGGCTGCGTCGTTGG+AGG | 0.489293 | 4_4:-51442713 | Msa0686820:CDS |
| CTGCTGAAGATGATCAGGTT+GGG | 0.489651 | 4_4:-51442831 | Msa0686820:CDS |
| AGGCCAGAATTTGGGGCTCA+AGG | 0.491612 | 4_4:-51442356 | Msa0686820:CDS |
| CAAGCTTCCAGTAAAAGAAA+AGG | 0.495698 | 4_4:-51442286 | Msa0686820:CDS |
| ATCTTCAGCAGGGACAATCT+TGG | 0.499105 | 4_4:+51442843 | None:intergenic |
| TTGGGGCTCAAGGATCTTCG+TGG | 0.500226 | 4_4:-51442346 | Msa0686820:CDS |
| GGGTTCATCACATGAGAGCC+AGG | 0.513240 | 4_4:+51442505 | None:intergenic |
| GCATATTGCCTTCGTCCAGA+TGG | 0.514127 | 4_4:-51442457 | Msa0686820:CDS |
| TGTCCCTGCTGAAGATGATC+AGG | 0.516014 | 4_4:-51442836 | Msa0686820:CDS |
| CCAGTAAGAAGCGACCGGTT+GGG | 0.517346 | 4_4:-51442774 | Msa0686820:CDS |
| ATCGTGAGAAGAAGAAAGCT+AGG | 0.518063 | 4_4:-51442729 | Msa0686820:CDS |
| TAATGTGCAGTGTGATGATC+GGG | 0.521659 | 4_4:-51442479 | Msa0686820:CDS |
| CTTTGGAGGCCGAAGTTGCG+AGG | 0.525689 | 4_4:-51442627 | Msa0686820:CDS |
| CCAACCTGATCATCTTCAGC+AGG | 0.525807 | 4_4:+51442832 | None:intergenic |
| GATGAGGAAGTTGCAAGGGC+AGG | 0.525833 | 4_4:-51442653 | Msa0686820:CDS |
| TCCAGTAAGAAGCGACCGGT+TGG | 0.526553 | 4_4:-51442775 | Msa0686820:CDS |
| AGGATGAGGTCATGAAATTG+AGG | 0.534541 | 4_4:-51442693 | Msa0686820:CDS |
| ATCGCGGGATTCACATTCGC+GGG | 0.538798 | 4_4:+51442535 | None:intergenic |
| CATATTGCCTTCGTCCAGAT+GGG | 0.548979 | 4_4:-51442456 | Msa0686820:CDS |
| AATTCTGGCCTCCCATACAC+TGG | 0.551814 | 4_4:+51442368 | None:intergenic |
| ATGGCTGAATTTCAAACAAG+TGG | 0.554218 | 4_4:-51442985 | Msa0686820:CDS |
| GACCAGGTGGGTTACACGTG+TGG | 0.559695 | 4_4:+51442905 | None:intergenic |
| AATCCCGCGATGAATTTGCC+TGG | 0.562632 | 4_4:-51442523 | Msa0686820:CDS |
| ACACTTCAACCTCGCAACTT+CGG | 0.570082 | 4_4:+51442618 | None:intergenic |
| GTTTGTTGGTTGATATTAGG+GGG | 0.578395 | 4_4:-51442597 | Msa0686820:CDS |
| GGATGAGGTCATGAAATTGA+GGG | 0.578672 | 4_4:-51442692 | Msa0686820:CDS |
| ACACGTGTGGGTATGAGTAC+AGG | 0.580524 | 4_4:+51442918 | None:intergenic |
| TGTTTGTTGGTTGATATTAG+GGG | 0.581606 | 4_4:-51442598 | Msa0686820:CDS |
| GTAATGTGCAGTGTGATGAT+CGG | 0.581966 | 4_4:-51442480 | Msa0686820:CDS |
| GAAGTCCAGTAAGAAGCGAC+CGG | 0.585566 | 4_4:-51442779 | Msa0686820:CDS |
| TTTGAGAGTCTCCAGTGTAT+GGG | 0.588557 | 4_4:-51442379 | Msa0686820:CDS |
| TGAAGTGGCGTTGCCGAATG+AGG | 0.594233 | 4_4:-51442422 | Msa0686820:CDS |
| GTATGGGAGGCCAGAATTTG+GGG | 0.595109 | 4_4:-51442363 | Msa0686820:CDS |
| ATTTGATGAGGAAGTTGCAA+GGG | 0.596253 | 4_4:-51442657 | Msa0686820:CDS |
| GTGGCGTTGCCGAATGAGGA+TGG | 0.599193 | 4_4:-51442418 | Msa0686820:CDS |
| CATCGCGGGATTCACATTCG+CGG | 0.599241 | 4_4:+51442534 | None:intergenic |
| AAGGATCTTCGTGGTTGTGG+AGG | 0.602836 | 4_4:-51442337 | Msa0686820:CDS |
| CATTTGATGAGGAAGTTGCA+AGG | 0.604562 | 4_4:-51442658 | Msa0686820:CDS |
| ACCCACACGTGTAACCCACC+TGG | 0.607124 | 4_4:-51442907 | Msa0686820:CDS |
| ACCAGGTGGGTTACACGTGT+GGG | 0.610384 | 4_4:+51442906 | None:intergenic |
| GAGCCAGGCAAATTCATCGC+GGG | 0.610422 | 4_4:+51442520 | None:intergenic |
| TCGTGAGAAGAAGAAAGCTA+GGG | 0.612179 | 4_4:-51442728 | Msa0686820:CDS |
| TGGGAAGATTGCTGCTGAAG+TGG | 0.614233 | 4_4:-51442437 | Msa0686820:CDS |
| CTTTGAATCAGCATTTGATG+AGG | 0.616238 | 4_4:-51442669 | Msa0686820:CDS |
| CAATCTTCCCATCTGGACGA+AGG | 0.622375 | 4_4:+51442449 | None:intergenic |
| CCTGCTGAAGATGATCAGGT+TGG | 0.627520 | 4_4:-51442832 | Msa0686820:CDS |
| GAGAGTCTCCAGTGTATGGG+AGG | 0.629740 | 4_4:-51442376 | Msa0686820:CDS |
| GCGACCGGTTGGGAATAAAG+AGG | 0.649541 | 4_4:-51442764 | Msa0686820:CDS |
| CAACCTGATCATCTTCAGCA+GGG | 0.684116 | 4_4:+51442833 | None:intergenic |
| ACCGGTTGGGAATAAAGAGG+CGG | 0.690479 | 4_4:-51442761 | Msa0686820:CDS |
| CATCACACTGCACATTACAA+GGG | 0.696358 | 4_4:+51442485 | None:intergenic |
| AGAGCCAGGCAAATTCATCG+CGG | 0.740100 | 4_4:+51442519 | None:intergenic |
| GAATTGACATTAGACAACGC+CGG | 0.756510 | 4_4:+51442310 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGATGAATTGTTGA+AGG | - | chr4_4:51442365-51442384 | Msa0686820:CDS | 20.0% |
| !!! | TTTTTTTGATGAATTGTTGA+AGG | - | chr4_4:51442365-51442384 | Msa0686820:CDS | 20.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | - | chr4_4:51442338-51442357 | Msa0686820:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATT+AGG | - | chr4_4:51442715-51442734 | Msa0686820:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATTA+GGG | - | chr4_4:51442716-51442735 | Msa0686820:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATTAG+GGG | - | chr4_4:51442717-51442736 | Msa0686820:CDS | 30.0% |
| ATTTCAAACAAGTGGTTCAA+TGG | - | chr4_4:51442338-51442357 | Msa0686820:CDS | 30.0% | |
| ! | AGTGTTTGTTGGTTGATATT+AGG | - | chr4_4:51442715-51442734 | Msa0686820:CDS | 30.0% |
| ! | GTGTTTGTTGGTTGATATTA+GGG | - | chr4_4:51442716-51442735 | Msa0686820:CDS | 30.0% |
| ! | TGTTTGTTGGTTGATATTAG+GGG | - | chr4_4:51442717-51442736 | Msa0686820:CDS | 30.0% |
| ! | GTTTGAAATTCAGCCATGTT+TGG | + | chr4_4:51442327-51442346 | None:intergenic | 35.0% |
| ATGGCTGAATTTCAAACAAG+TGG | - | chr4_4:51442330-51442349 | Msa0686820:CDS | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | - | chr4_4:51442646-51442665 | Msa0686820:CDS | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | - | chr4_4:51442658-51442677 | Msa0686820:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATTAGG+GGG | - | chr4_4:51442718-51442737 | Msa0686820:CDS | 35.0% |
| CAAGCTTCCAGTAAAAGAAA+AGG | - | chr4_4:51443029-51443048 | Msa0686820:CDS | 35.0% | |
| ! | GTCATCACCTTTTCTTTTAC+TGG | + | chr4_4:51443039-51443058 | None:intergenic | 35.0% |
| ! | GTTTGAAATTCAGCCATGTT+TGG | + | chr4_4:51442327-51442346 | None:intergenic | 35.0% |
| ATGGCTGAATTTCAAACAAG+TGG | - | chr4_4:51442330-51442349 | Msa0686820:CDS | 35.0% | |
| CTTTGAATCAGCATTTGATG+AGG | - | chr4_4:51442646-51442665 | Msa0686820:CDS | 35.0% | |
| ATTTGATGAGGAAGTTGCAA+GGG | - | chr4_4:51442658-51442677 | Msa0686820:CDS | 35.0% | |
| ! | GTTTGTTGGTTGATATTAGG+GGG | - | chr4_4:51442718-51442737 | Msa0686820:CDS | 35.0% |
| CAAGCTTCCAGTAAAAGAAA+AGG | - | chr4_4:51443029-51443048 | Msa0686820:CDS | 35.0% | |
| ! | GTCATCACCTTTTCTTTTAC+TGG | + | chr4_4:51443039-51443058 | None:intergenic | 35.0% |
| GTGTGAGTGTGTGAAAAATC+AGG | + | chr4_4:51442435-51442454 | None:intergenic | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | - | chr4_4:51442586-51442605 | Msa0686820:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | - | chr4_4:51442587-51442606 | Msa0686820:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | - | chr4_4:51442622-51442641 | Msa0686820:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | - | chr4_4:51442623-51442642 | Msa0686820:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | - | chr4_4:51442657-51442676 | Msa0686820:CDS | 40.0% | |
| ATATTAGGGGGAGGATTGAA+GGG | - | chr4_4:51442730-51442749 | Msa0686820:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | + | chr4_4:51442833-51442852 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | + | chr4_4:51442834-51442853 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | - | chr4_4:51442835-51442854 | Msa0686820:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | - | chr4_4:51442836-51442855 | Msa0686820:CDS | 40.0% | |
| CCATCAAATCCATCCTCATT+CGG | + | chr4_4:51442909-51442928 | None:intergenic | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | - | chr4_4:51442936-51442955 | Msa0686820:CDS | 40.0% | |
| GAATTGACATTAGACAACGC+CGG | + | chr4_4:51443008-51443027 | None:intergenic | 40.0% | |
| GTGTGAGTGTGTGAAAAATC+AGG | + | chr4_4:51442435-51442454 | None:intergenic | 40.0% | |
| ATCGTGAGAAGAAGAAAGCT+AGG | - | chr4_4:51442586-51442605 | Msa0686820:CDS | 40.0% | |
| TCGTGAGAAGAAGAAAGCTA+GGG | - | chr4_4:51442587-51442606 | Msa0686820:CDS | 40.0% | |
| AGGATGAGGTCATGAAATTG+AGG | - | chr4_4:51442622-51442641 | Msa0686820:CDS | 40.0% | |
| GGATGAGGTCATGAAATTGA+GGG | - | chr4_4:51442623-51442642 | Msa0686820:CDS | 40.0% | |
| CATTTGATGAGGAAGTTGCA+AGG | - | chr4_4:51442657-51442676 | Msa0686820:CDS | 40.0% | |
| ATATTAGGGGGAGGATTGAA+GGG | - | chr4_4:51442730-51442749 | Msa0686820:CDS | 40.0% | |
| CATCACACTGCACATTACAA+GGG | + | chr4_4:51442833-51442852 | None:intergenic | 40.0% | |
| TCATCACACTGCACATTACA+AGG | + | chr4_4:51442834-51442853 | None:intergenic | 40.0% | |
| GTAATGTGCAGTGTGATGAT+CGG | - | chr4_4:51442835-51442854 | Msa0686820:CDS | 40.0% | |
| TAATGTGCAGTGTGATGATC+GGG | - | chr4_4:51442836-51442855 | Msa0686820:CDS | 40.0% | |
| CCATCAAATCCATCCTCATT+CGG | + | chr4_4:51442909-51442928 | None:intergenic | 40.0% | |
| TTTGAGAGTCTCCAGTGTAT+GGG | - | chr4_4:51442936-51442955 | Msa0686820:CDS | 40.0% | |
| GAATTGACATTAGACAACGC+CGG | + | chr4_4:51443008-51443027 | None:intergenic | 40.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | - | chr4_4:51442311-51442330 | Msa0686820:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | + | chr4_4:51442425-51442444 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | + | chr4_4:51442426-51442445 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | + | chr4_4:51442429-51442448 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | + | chr4_4:51442475-51442494 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | + | chr4_4:51442485-51442504 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | - | chr4_4:51442484-51442503 | Msa0686820:CDS | 45.0% | |
| ACACTTCAACCTCGCAACTT+CGG | + | chr4_4:51442700-51442719 | None:intergenic | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | - | chr4_4:51442704-51442723 | Msa0686820:CDS | 45.0% |
| ! | TGTTGGTTGATATTAGGGGG+AGG | - | chr4_4:51442721-51442740 | Msa0686820:CDS | 45.0% |
| GATATTAGGGGGAGGATTGA+AGG | - | chr4_4:51442729-51442748 | Msa0686820:CDS | 45.0% | |
| TATTAGGGGGAGGATTGAAG+GGG | - | chr4_4:51442731-51442750 | Msa0686820:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | - | chr4_4:51442739-51442758 | Msa0686820:CDS | 45.0% | |
| ACATTCGCGGGTTTCTGATA+CGG | + | chr4_4:51442771-51442790 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | - | chr4_4:51442859-51442878 | Msa0686820:CDS | 45.0% | |
| ! | CCGAATGAGGATGGATTTGA+TGG | - | chr4_4:51442906-51442925 | Msa0686820:CDS | 45.0% |
| GTTTGAGAGTCTCCAGTGTA+TGG | - | chr4_4:51442935-51442954 | Msa0686820:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | - | chr4_4:51442951-51442970 | Msa0686820:CDS | 45.0% | |
| !!! | CGTGTTTTCGAGTCCAAACA+TGG | - | chr4_4:51442311-51442330 | Msa0686820:CDS | 45.0% |
| GTGAAAAATCAGGACCAGGT+GGG | + | chr4_4:51442425-51442444 | None:intergenic | 45.0% | |
| TGTGAAAAATCAGGACCAGG+TGG | + | chr4_4:51442426-51442445 | None:intergenic | 45.0% | |
| GTGTGTGAAAAATCAGGACC+AGG | + | chr4_4:51442429-51442448 | None:intergenic | 45.0% | |
| ATCTTCAGCAGGGACAATCT+TGG | + | chr4_4:51442475-51442494 | None:intergenic | 45.0% | |
| CAACCTGATCATCTTCAGCA+GGG | + | chr4_4:51442485-51442504 | None:intergenic | 45.0% | |
| CTGCTGAAGATGATCAGGTT+GGG | - | chr4_4:51442484-51442503 | Msa0686820:CDS | 45.0% | |
| ACACTTCAACCTCGCAACTT+CGG | + | chr4_4:51442700-51442719 | None:intergenic | 45.0% | |
| ! | TGCGAGGTTGAAGTGTTTGT+TGG | - | chr4_4:51442704-51442723 | Msa0686820:CDS | 45.0% |
| ! | TGTTGGTTGATATTAGGGGG+AGG | - | chr4_4:51442721-51442740 | Msa0686820:CDS | 45.0% |
| GATATTAGGGGGAGGATTGA+AGG | - | chr4_4:51442729-51442748 | Msa0686820:CDS | 45.0% | |
| TATTAGGGGGAGGATTGAAG+GGG | - | chr4_4:51442731-51442750 | Msa0686820:CDS | 45.0% | |
| GGAGGATTGAAGGGGAAATT+GGG | - | chr4_4:51442739-51442758 | Msa0686820:CDS | 45.0% | |
| ACATTCGCGGGTTTCTGATA+CGG | + | chr4_4:51442771-51442790 | None:intergenic | 45.0% | |
| CATATTGCCTTCGTCCAGAT+GGG | - | chr4_4:51442859-51442878 | Msa0686820:CDS | 45.0% | |
| ! | CCGAATGAGGATGGATTTGA+TGG | - | chr4_4:51442906-51442925 | Msa0686820:CDS | 45.0% |
| GTTTGAGAGTCTCCAGTGTA+TGG | - | chr4_4:51442935-51442954 | Msa0686820:CDS | 45.0% | |
| TGTATGGGAGGCCAGAATTT+GGG | - | chr4_4:51442951-51442970 | Msa0686820:CDS | 45.0% | |
| ACACGTGTGGGTATGAGTAC+AGG | + | chr4_4:51442400-51442419 | None:intergenic | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | - | chr4_4:51442479-51442498 | Msa0686820:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | + | chr4_4:51442486-51442505 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | - | chr4_4:51442483-51442502 | Msa0686820:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | - | chr4_4:51442536-51442555 | Msa0686820:CDS | 50.0% | |
| ACCGGTTGGGAATAAAGAGG+CGG | - | chr4_4:51442554-51442573 | Msa0686820:CDS | 50.0% | |
| ACCGCCTCTTTATTCCCAAC+CGG | + | chr4_4:51442558-51442577 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | - | chr4_4:51442738-51442757 | Msa0686820:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | - | chr4_4:51442792-51442811 | Msa0686820:CDS | 50.0% | |
| AGAGCCAGGCAAATTCATCG+CGG | + | chr4_4:51442799-51442818 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | - | chr4_4:51442858-51442877 | Msa0686820:CDS | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | + | chr4_4:51442869-51442888 | None:intergenic | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | + | chr4_4:51442876-51442895 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | - | chr4_4:51442878-51442897 | Msa0686820:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | + | chr4_4:51442950-51442969 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | - | chr4_4:51442950-51442969 | Msa0686820:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | - | chr4_4:51442952-51442971 | Msa0686820:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | + | chr4_4:51442965-51442984 | None:intergenic | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | - | chr4_4:51442975-51442994 | Msa0686820:CDS | 50.0% | |
| AAGGATCTTCGTGGTTGTGG+AGG | - | chr4_4:51442978-51442997 | Msa0686820:CDS | 50.0% | |
| ACACGTGTGGGTATGAGTAC+AGG | + | chr4_4:51442400-51442419 | None:intergenic | 50.0% | |
| TGTCCCTGCTGAAGATGATC+AGG | - | chr4_4:51442479-51442498 | Msa0686820:CDS | 50.0% | |
| CCAACCTGATCATCTTCAGC+AGG | + | chr4_4:51442486-51442505 | None:intergenic | 50.0% | |
| CCTGCTGAAGATGATCAGGT+TGG | - | chr4_4:51442483-51442502 | Msa0686820:CDS | 50.0% | |
| GAAGTCCAGTAAGAAGCGAC+CGG | - | chr4_4:51442536-51442555 | Msa0686820:CDS | 50.0% | |
| ACCGGTTGGGAATAAAGAGG+CGG | - | chr4_4:51442554-51442573 | Msa0686820:CDS | 50.0% | |
| ACCGCCTCTTTATTCCCAAC+CGG | + | chr4_4:51442558-51442577 | None:intergenic | 50.0% | |
| GGGAGGATTGAAGGGGAAAT+TGG | - | chr4_4:51442738-51442757 | Msa0686820:CDS | 50.0% | |
| AATCCCGCGATGAATTTGCC+TGG | - | chr4_4:51442792-51442811 | Msa0686820:CDS | 50.0% | |
| AGAGCCAGGCAAATTCATCG+CGG | + | chr4_4:51442799-51442818 | None:intergenic | 50.0% | |
| GCATATTGCCTTCGTCCAGA+TGG | - | chr4_4:51442858-51442877 | Msa0686820:CDS | 50.0% | |
| CAATCTTCCCATCTGGACGA+AGG | + | chr4_4:51442869-51442888 | None:intergenic | 50.0% | |
| TCAGCAGCAATCTTCCCATC+TGG | + | chr4_4:51442876-51442895 | None:intergenic | 50.0% | |
| TGGGAAGATTGCTGCTGAAG+TGG | - | chr4_4:51442878-51442897 | Msa0686820:CDS | 50.0% | |
| AATTCTGGCCTCCCATACAC+TGG | + | chr4_4:51442950-51442969 | None:intergenic | 50.0% | |
| GTGTATGGGAGGCCAGAATT+TGG | - | chr4_4:51442950-51442969 | Msa0686820:CDS | 50.0% | |
| GTATGGGAGGCCAGAATTTG+GGG | - | chr4_4:51442952-51442971 | Msa0686820:CDS | 50.0% | |
| GATCCTTGAGCCCCAAATTC+TGG | + | chr4_4:51442965-51442984 | None:intergenic | 50.0% | |
| CTCAAGGATCTTCGTGGTTG+TGG | - | chr4_4:51442975-51442994 | Msa0686820:CDS | 50.0% | |
| AAGGATCTTCGTGGTTGTGG+AGG | - | chr4_4:51442978-51442997 | Msa0686820:CDS | 50.0% | |
| !! | ACCAGGTGGGTTACACGTGT+GGG | + | chr4_4:51442412-51442431 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | - | chr4_4:51442540-51442559 | Msa0686820:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | - | chr4_4:51442541-51442560 | Msa0686820:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | - | chr4_4:51442551-51442570 | Msa0686820:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | - | chr4_4:51442662-51442681 | Msa0686820:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+GGG | + | chr4_4:51442783-51442802 | None:intergenic | 55.0% | |
| CATCGCGGGATTCACATTCG+CGG | + | chr4_4:51442784-51442803 | None:intergenic | 55.0% | |
| GAGCCAGGCAAATTCATCGC+GGG | + | chr4_4:51442798-51442817 | None:intergenic | 55.0% | |
| GGGTTCATCACATGAGAGCC+AGG | + | chr4_4:51442813-51442832 | None:intergenic | 55.0% | |
| TGAAGTGGCGTTGCCGAATG+AGG | - | chr4_4:51442893-51442912 | Msa0686820:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | - | chr4_4:51442939-51442958 | Msa0686820:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | - | chr4_4:51442959-51442978 | Msa0686820:CDS | 55.0% |
| TTGGGGCTCAAGGATCTTCG+TGG | - | chr4_4:51442969-51442988 | Msa0686820:CDS | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | - | chr4_4:51442981-51443000 | Msa0686820:CDS | 55.0% | |
| !! | ACCAGGTGGGTTACACGTGT+GGG | + | chr4_4:51442412-51442431 | None:intergenic | 55.0% |
| TCCAGTAAGAAGCGACCGGT+TGG | - | chr4_4:51442540-51442559 | Msa0686820:CDS | 55.0% | |
| CCAGTAAGAAGCGACCGGTT+GGG | - | chr4_4:51442541-51442560 | Msa0686820:CDS | 55.0% | |
| GCGACCGGTTGGGAATAAAG+AGG | - | chr4_4:51442551-51442570 | Msa0686820:CDS | 55.0% | |
| GATGAGGAAGTTGCAAGGGC+AGG | - | chr4_4:51442662-51442681 | Msa0686820:CDS | 55.0% | |
| ATCGCGGGATTCACATTCGC+GGG | + | chr4_4:51442783-51442802 | None:intergenic | 55.0% | |
| CATCGCGGGATTCACATTCG+CGG | + | chr4_4:51442784-51442803 | None:intergenic | 55.0% | |
| GAGCCAGGCAAATTCATCGC+GGG | + | chr4_4:51442798-51442817 | None:intergenic | 55.0% | |
| GGGTTCATCACATGAGAGCC+AGG | + | chr4_4:51442813-51442832 | None:intergenic | 55.0% | |
| TGAAGTGGCGTTGCCGAATG+AGG | - | chr4_4:51442893-51442912 | Msa0686820:CDS | 55.0% | |
| GAGAGTCTCCAGTGTATGGG+AGG | - | chr4_4:51442939-51442958 | Msa0686820:CDS | 55.0% | |
| ! | AGGCCAGAATTTGGGGCTCA+AGG | - | chr4_4:51442959-51442978 | Msa0686820:CDS | 55.0% |
| TTGGGGCTCAAGGATCTTCG+TGG | - | chr4_4:51442969-51442988 | Msa0686820:CDS | 55.0% | |
| GATCTTCGTGGTTGTGGAGG+TGG | - | chr4_4:51442981-51443000 | Msa0686820:CDS | 55.0% | |
| ACCCACACGTGTAACCCACC+TGG | - | chr4_4:51442408-51442427 | Msa0686820:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | + | chr4_4:51442413-51442432 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | + | chr4_4:51442544-51442563 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | - | chr4_4:51442599-51442618 | Msa0686820:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | - | chr4_4:51442671-51442690 | Msa0686820:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | - | chr4_4:51442688-51442707 | Msa0686820:CDS | 60.0% |
| GTGGCGTTGCCGAATGAGGA+TGG | - | chr4_4:51442897-51442916 | Msa0686820:CDS | 60.0% | |
| TCGTGGTTGTGGAGGTGGAC+CGG | - | chr4_4:51442986-51443005 | Msa0686820:CDS | 60.0% | |
| ACCCACACGTGTAACCCACC+TGG | - | chr4_4:51442408-51442427 | Msa0686820:CDS | 60.0% | |
| !! | GACCAGGTGGGTTACACGTG+TGG | + | chr4_4:51442413-51442432 | None:intergenic | 60.0% |
| CCCAACCGGTCGCTTCTTAC+TGG | + | chr4_4:51442544-51442563 | None:intergenic | 60.0% | |
| GAAAGCTAGGGCTGCGTCGT+TGG | - | chr4_4:51442599-51442618 | Msa0686820:CDS | 60.0% | |
| GTTGCAAGGGCAGGCTGCTT+TGG | - | chr4_4:51442671-51442690 | Msa0686820:CDS | 60.0% | |
| ! | CTTTGGAGGCCGAAGTTGCG+AGG | - | chr4_4:51442688-51442707 | Msa0686820:CDS | 60.0% |
| GTGGCGTTGCCGAATGAGGA+TGG | - | chr4_4:51442897-51442916 | Msa0686820:CDS | 60.0% | |
| TCGTGGTTGTGGAGGTGGAC+CGG | - | chr4_4:51442986-51443005 | Msa0686820:CDS | 60.0% | |
| AGCTAGGGCTGCGTCGTTGG+AGG | - | chr4_4:51442602-51442621 | Msa0686820:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | - | chr4_4:51442608-51442627 | Msa0686820:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | - | chr4_4:51442674-51442693 | Msa0686820:CDS | 65.0% |
| AGCTAGGGCTGCGTCGTTGG+AGG | - | chr4_4:51442602-51442621 | Msa0686820:CDS | 65.0% | |
| GGCTGCGTCGTTGGAGGATG+AGG | - | chr4_4:51442608-51442627 | Msa0686820:CDS | 65.0% | |
| ! | GCAAGGGCAGGCTGCTTTGG+AGG | - | chr4_4:51442674-51442693 | Msa0686820:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 51442276 | 51443061 | 51442276 | ID=Msa0686820;Name=Msa0686820 |
| chr4_4 | mRNA | 51442276 | 51443061 | 51442276 | ID=Msa0686820-mRNA-1;Parent=Msa0686820;Name=Msa0686820-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|261 |
| chr4_4 | exon | 51442276 | 51443061 | 51442276 | ID=Msa0686820-mRNA-1:exon:13318;Parent=Msa0686820-mRNA-1 |
| chr4_4 | CDS | 51442276 | 51443061 | 51442276 | ID=Msa0686820-mRNA-1:cds;Parent=Msa0686820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
