AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0686820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686820 MtrunA17_Chr4g0036971 98.069 259 5 0 1 259 1 259 0.0 533
Msa0686820 MtrunA17_Chr3g0090531 41.089 202 95 4 1 197 1 183 7.02e-34 121
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0686820 AT2G16770.2 60.920 261 82 6 1 260 1 242 1.22e-106 309
Msa0686820 AT2G16770.1 60.920 261 82 6 1 260 1 242 1.22e-106 309
Msa0686820 AT4G35040.1 63.636 264 80 8 1 259 1 253 4.65e-106 308
Msa0686820 AT4G35040.4 63.636 264 80 8 1 259 1 253 4.65e-106 308
Msa0686820 AT4G35040.2 63.636 264 80 8 1 259 1 253 4.65e-106 308
Msa0686820 AT4G35040.3 63.636 264 80 8 1 259 1 253 4.65e-106 308
Msa0686820 AT3G51960.3 54.478 134 54 3 39 171 13 140 1.76e-45 151
Msa0686820 AT3G51960.2 54.478 134 54 3 39 171 52 179 4.45e-45 151
Msa0686820 AT3G51960.1 52.239 134 56 2 39 171 52 178 1.17e-43 148

Find 78 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGAGGATTGAAGGGGAAAT+TGG 0.206995 4_4:-51442577 Msa0686820:CDS
GTGTTTGTTGGTTGATATTA+GGG 0.255056 4_4:-51442599 Msa0686820:CDS
CCCAACCGGTCGCTTCTTAC+TGG 0.266035 4_4:+51442774 None:intergenic
GATCCTTGAGCCCCAAATTC+TGG 0.270466 4_4:+51442353 None:intergenic
AGTGTTTGTTGGTTGATATT+AGG 0.273430 4_4:-51442600 Msa0686820:CDS
GTGTATGGGAGGCCAGAATT+TGG 0.299733 4_4:-51442365 Msa0686820:CDS
TGTATGGGAGGCCAGAATTT+GGG 0.316343 4_4:-51442364 Msa0686820:CDS
GTTGCAAGGGCAGGCTGCTT+TGG 0.335855 4_4:-51442644 Msa0686820:CDS
GTTTGAAATTCAGCCATGTT+TGG 0.367715 4_4:+51442991 None:intergenic
CCGAATGAGGATGGATTTGA+TGG 0.369232 4_4:-51442409 Msa0686820:CDS
CTCAAGGATCTTCGTGGTTG+TGG 0.376487 4_4:-51442340 Msa0686820:CDS
GGAGGATTGAAGGGGAAATT+GGG 0.382575 4_4:-51442576 Msa0686820:CDS
ATTTCAAACAAGTGGTTCAA+TGG 0.405614 4_4:-51442977 Msa0686820:CDS
GTTTGAGAGTCTCCAGTGTA+TGG 0.417641 4_4:-51442380 Msa0686820:CDS
TGCGAGGTTGAAGTGTTTGT+TGG 0.420725 4_4:-51442611 Msa0686820:CDS
GCAAGGGCAGGCTGCTTTGG+AGG 0.426440 4_4:-51442641 Msa0686820:CDS
GGCTGCGTCGTTGGAGGATG+AGG 0.428168 4_4:-51442707 Msa0686820:CDS
TCATCACACTGCACATTACA+AGG 0.429810 4_4:+51442484 None:intergenic
GATCTTCGTGGTTGTGGAGG+TGG 0.440100 4_4:-51442334 Msa0686820:CDS
ACCGCCTCTTTATTCCCAAC+CGG 0.455765 4_4:+51442760 None:intergenic
TCAGCAGCAATCTTCCCATC+TGG 0.456534 4_4:+51442442 None:intergenic
ACATTCGCGGGTTTCTGATA+CGG 0.475335 4_4:+51442547 None:intergenic
GAAAGCTAGGGCTGCGTCGT+TGG 0.478279 4_4:-51442716 Msa0686820:CDS
TCGTGGTTGTGGAGGTGGAC+CGG 0.485043 4_4:-51442329 Msa0686820:CDS
CCATCAAATCCATCCTCATT+CGG 0.488283 4_4:+51442409 None:intergenic
AGCTAGGGCTGCGTCGTTGG+AGG 0.489293 4_4:-51442713 Msa0686820:CDS
CTGCTGAAGATGATCAGGTT+GGG 0.489651 4_4:-51442831 Msa0686820:CDS
AGGCCAGAATTTGGGGCTCA+AGG 0.491612 4_4:-51442356 Msa0686820:CDS
CAAGCTTCCAGTAAAAGAAA+AGG 0.495698 4_4:-51442286 Msa0686820:CDS
ATCTTCAGCAGGGACAATCT+TGG 0.499105 4_4:+51442843 None:intergenic
TTGGGGCTCAAGGATCTTCG+TGG 0.500226 4_4:-51442346 Msa0686820:CDS
GGGTTCATCACATGAGAGCC+AGG 0.513240 4_4:+51442505 None:intergenic
GCATATTGCCTTCGTCCAGA+TGG 0.514127 4_4:-51442457 Msa0686820:CDS
TGTCCCTGCTGAAGATGATC+AGG 0.516014 4_4:-51442836 Msa0686820:CDS
CCAGTAAGAAGCGACCGGTT+GGG 0.517346 4_4:-51442774 Msa0686820:CDS
ATCGTGAGAAGAAGAAAGCT+AGG 0.518063 4_4:-51442729 Msa0686820:CDS
TAATGTGCAGTGTGATGATC+GGG 0.521659 4_4:-51442479 Msa0686820:CDS
CTTTGGAGGCCGAAGTTGCG+AGG 0.525689 4_4:-51442627 Msa0686820:CDS
CCAACCTGATCATCTTCAGC+AGG 0.525807 4_4:+51442832 None:intergenic
GATGAGGAAGTTGCAAGGGC+AGG 0.525833 4_4:-51442653 Msa0686820:CDS
TCCAGTAAGAAGCGACCGGT+TGG 0.526553 4_4:-51442775 Msa0686820:CDS
AGGATGAGGTCATGAAATTG+AGG 0.534541 4_4:-51442693 Msa0686820:CDS
ATCGCGGGATTCACATTCGC+GGG 0.538798 4_4:+51442535 None:intergenic
CATATTGCCTTCGTCCAGAT+GGG 0.548979 4_4:-51442456 Msa0686820:CDS
AATTCTGGCCTCCCATACAC+TGG 0.551814 4_4:+51442368 None:intergenic
ATGGCTGAATTTCAAACAAG+TGG 0.554218 4_4:-51442985 Msa0686820:CDS
GACCAGGTGGGTTACACGTG+TGG 0.559695 4_4:+51442905 None:intergenic
AATCCCGCGATGAATTTGCC+TGG 0.562632 4_4:-51442523 Msa0686820:CDS
ACACTTCAACCTCGCAACTT+CGG 0.570082 4_4:+51442618 None:intergenic
GTTTGTTGGTTGATATTAGG+GGG 0.578395 4_4:-51442597 Msa0686820:CDS
GGATGAGGTCATGAAATTGA+GGG 0.578672 4_4:-51442692 Msa0686820:CDS
ACACGTGTGGGTATGAGTAC+AGG 0.580524 4_4:+51442918 None:intergenic
TGTTTGTTGGTTGATATTAG+GGG 0.581606 4_4:-51442598 Msa0686820:CDS
GTAATGTGCAGTGTGATGAT+CGG 0.581966 4_4:-51442480 Msa0686820:CDS
GAAGTCCAGTAAGAAGCGAC+CGG 0.585566 4_4:-51442779 Msa0686820:CDS
TTTGAGAGTCTCCAGTGTAT+GGG 0.588557 4_4:-51442379 Msa0686820:CDS
TGAAGTGGCGTTGCCGAATG+AGG 0.594233 4_4:-51442422 Msa0686820:CDS
GTATGGGAGGCCAGAATTTG+GGG 0.595109 4_4:-51442363 Msa0686820:CDS
ATTTGATGAGGAAGTTGCAA+GGG 0.596253 4_4:-51442657 Msa0686820:CDS
GTGGCGTTGCCGAATGAGGA+TGG 0.599193 4_4:-51442418 Msa0686820:CDS
CATCGCGGGATTCACATTCG+CGG 0.599241 4_4:+51442534 None:intergenic
AAGGATCTTCGTGGTTGTGG+AGG 0.602836 4_4:-51442337 Msa0686820:CDS
CATTTGATGAGGAAGTTGCA+AGG 0.604562 4_4:-51442658 Msa0686820:CDS
ACCCACACGTGTAACCCACC+TGG 0.607124 4_4:-51442907 Msa0686820:CDS
ACCAGGTGGGTTACACGTGT+GGG 0.610384 4_4:+51442906 None:intergenic
GAGCCAGGCAAATTCATCGC+GGG 0.610422 4_4:+51442520 None:intergenic
TCGTGAGAAGAAGAAAGCTA+GGG 0.612179 4_4:-51442728 Msa0686820:CDS
TGGGAAGATTGCTGCTGAAG+TGG 0.614233 4_4:-51442437 Msa0686820:CDS
CTTTGAATCAGCATTTGATG+AGG 0.616238 4_4:-51442669 Msa0686820:CDS
CAATCTTCCCATCTGGACGA+AGG 0.622375 4_4:+51442449 None:intergenic
CCTGCTGAAGATGATCAGGT+TGG 0.627520 4_4:-51442832 Msa0686820:CDS
GAGAGTCTCCAGTGTATGGG+AGG 0.629740 4_4:-51442376 Msa0686820:CDS
GCGACCGGTTGGGAATAAAG+AGG 0.649541 4_4:-51442764 Msa0686820:CDS
CAACCTGATCATCTTCAGCA+GGG 0.684116 4_4:+51442833 None:intergenic
ACCGGTTGGGAATAAAGAGG+CGG 0.690479 4_4:-51442761 Msa0686820:CDS
CATCACACTGCACATTACAA+GGG 0.696358 4_4:+51442485 None:intergenic
AGAGCCAGGCAAATTCATCG+CGG 0.740100 4_4:+51442519 None:intergenic
GAATTGACATTAGACAACGC+CGG 0.756510 4_4:+51442310 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTGATGAATTGTTGA+AGG - chr4_4:51442365-51442384 Msa0686820:CDS 20.0%
!!! TTTTTTTGATGAATTGTTGA+AGG - chr4_4:51442365-51442384 Msa0686820:CDS 20.0%
ATTTCAAACAAGTGGTTCAA+TGG - chr4_4:51442338-51442357 Msa0686820:CDS 30.0%
! AGTGTTTGTTGGTTGATATT+AGG - chr4_4:51442715-51442734 Msa0686820:CDS 30.0%
! GTGTTTGTTGGTTGATATTA+GGG - chr4_4:51442716-51442735 Msa0686820:CDS 30.0%
! TGTTTGTTGGTTGATATTAG+GGG - chr4_4:51442717-51442736 Msa0686820:CDS 30.0%
ATTTCAAACAAGTGGTTCAA+TGG - chr4_4:51442338-51442357 Msa0686820:CDS 30.0%
! AGTGTTTGTTGGTTGATATT+AGG - chr4_4:51442715-51442734 Msa0686820:CDS 30.0%
! GTGTTTGTTGGTTGATATTA+GGG - chr4_4:51442716-51442735 Msa0686820:CDS 30.0%
! TGTTTGTTGGTTGATATTAG+GGG - chr4_4:51442717-51442736 Msa0686820:CDS 30.0%
! GTTTGAAATTCAGCCATGTT+TGG + chr4_4:51442327-51442346 None:intergenic 35.0%
ATGGCTGAATTTCAAACAAG+TGG - chr4_4:51442330-51442349 Msa0686820:CDS 35.0%
CTTTGAATCAGCATTTGATG+AGG - chr4_4:51442646-51442665 Msa0686820:CDS 35.0%
ATTTGATGAGGAAGTTGCAA+GGG - chr4_4:51442658-51442677 Msa0686820:CDS 35.0%
! GTTTGTTGGTTGATATTAGG+GGG - chr4_4:51442718-51442737 Msa0686820:CDS 35.0%
CAAGCTTCCAGTAAAAGAAA+AGG - chr4_4:51443029-51443048 Msa0686820:CDS 35.0%
! GTCATCACCTTTTCTTTTAC+TGG + chr4_4:51443039-51443058 None:intergenic 35.0%
! GTTTGAAATTCAGCCATGTT+TGG + chr4_4:51442327-51442346 None:intergenic 35.0%
ATGGCTGAATTTCAAACAAG+TGG - chr4_4:51442330-51442349 Msa0686820:CDS 35.0%
CTTTGAATCAGCATTTGATG+AGG - chr4_4:51442646-51442665 Msa0686820:CDS 35.0%
ATTTGATGAGGAAGTTGCAA+GGG - chr4_4:51442658-51442677 Msa0686820:CDS 35.0%
! GTTTGTTGGTTGATATTAGG+GGG - chr4_4:51442718-51442737 Msa0686820:CDS 35.0%
CAAGCTTCCAGTAAAAGAAA+AGG - chr4_4:51443029-51443048 Msa0686820:CDS 35.0%
! GTCATCACCTTTTCTTTTAC+TGG + chr4_4:51443039-51443058 None:intergenic 35.0%
GTGTGAGTGTGTGAAAAATC+AGG + chr4_4:51442435-51442454 None:intergenic 40.0%
ATCGTGAGAAGAAGAAAGCT+AGG - chr4_4:51442586-51442605 Msa0686820:CDS 40.0%
TCGTGAGAAGAAGAAAGCTA+GGG - chr4_4:51442587-51442606 Msa0686820:CDS 40.0%
AGGATGAGGTCATGAAATTG+AGG - chr4_4:51442622-51442641 Msa0686820:CDS 40.0%
GGATGAGGTCATGAAATTGA+GGG - chr4_4:51442623-51442642 Msa0686820:CDS 40.0%
CATTTGATGAGGAAGTTGCA+AGG - chr4_4:51442657-51442676 Msa0686820:CDS 40.0%
ATATTAGGGGGAGGATTGAA+GGG - chr4_4:51442730-51442749 Msa0686820:CDS 40.0%
CATCACACTGCACATTACAA+GGG + chr4_4:51442833-51442852 None:intergenic 40.0%
TCATCACACTGCACATTACA+AGG + chr4_4:51442834-51442853 None:intergenic 40.0%
GTAATGTGCAGTGTGATGAT+CGG - chr4_4:51442835-51442854 Msa0686820:CDS 40.0%
TAATGTGCAGTGTGATGATC+GGG - chr4_4:51442836-51442855 Msa0686820:CDS 40.0%
CCATCAAATCCATCCTCATT+CGG + chr4_4:51442909-51442928 None:intergenic 40.0%
TTTGAGAGTCTCCAGTGTAT+GGG - chr4_4:51442936-51442955 Msa0686820:CDS 40.0%
GAATTGACATTAGACAACGC+CGG + chr4_4:51443008-51443027 None:intergenic 40.0%
GTGTGAGTGTGTGAAAAATC+AGG + chr4_4:51442435-51442454 None:intergenic 40.0%
ATCGTGAGAAGAAGAAAGCT+AGG - chr4_4:51442586-51442605 Msa0686820:CDS 40.0%
TCGTGAGAAGAAGAAAGCTA+GGG - chr4_4:51442587-51442606 Msa0686820:CDS 40.0%
AGGATGAGGTCATGAAATTG+AGG - chr4_4:51442622-51442641 Msa0686820:CDS 40.0%
GGATGAGGTCATGAAATTGA+GGG - chr4_4:51442623-51442642 Msa0686820:CDS 40.0%
CATTTGATGAGGAAGTTGCA+AGG - chr4_4:51442657-51442676 Msa0686820:CDS 40.0%
ATATTAGGGGGAGGATTGAA+GGG - chr4_4:51442730-51442749 Msa0686820:CDS 40.0%
CATCACACTGCACATTACAA+GGG + chr4_4:51442833-51442852 None:intergenic 40.0%
TCATCACACTGCACATTACA+AGG + chr4_4:51442834-51442853 None:intergenic 40.0%
GTAATGTGCAGTGTGATGAT+CGG - chr4_4:51442835-51442854 Msa0686820:CDS 40.0%
TAATGTGCAGTGTGATGATC+GGG - chr4_4:51442836-51442855 Msa0686820:CDS 40.0%
CCATCAAATCCATCCTCATT+CGG + chr4_4:51442909-51442928 None:intergenic 40.0%
TTTGAGAGTCTCCAGTGTAT+GGG - chr4_4:51442936-51442955 Msa0686820:CDS 40.0%
GAATTGACATTAGACAACGC+CGG + chr4_4:51443008-51443027 None:intergenic 40.0%
!!! CGTGTTTTCGAGTCCAAACA+TGG - chr4_4:51442311-51442330 Msa0686820:CDS 45.0%
GTGAAAAATCAGGACCAGGT+GGG + chr4_4:51442425-51442444 None:intergenic 45.0%
TGTGAAAAATCAGGACCAGG+TGG + chr4_4:51442426-51442445 None:intergenic 45.0%
GTGTGTGAAAAATCAGGACC+AGG + chr4_4:51442429-51442448 None:intergenic 45.0%
ATCTTCAGCAGGGACAATCT+TGG + chr4_4:51442475-51442494 None:intergenic 45.0%
CAACCTGATCATCTTCAGCA+GGG + chr4_4:51442485-51442504 None:intergenic 45.0%
CTGCTGAAGATGATCAGGTT+GGG - chr4_4:51442484-51442503 Msa0686820:CDS 45.0%
ACACTTCAACCTCGCAACTT+CGG + chr4_4:51442700-51442719 None:intergenic 45.0%
! TGCGAGGTTGAAGTGTTTGT+TGG - chr4_4:51442704-51442723 Msa0686820:CDS 45.0%
! TGTTGGTTGATATTAGGGGG+AGG - chr4_4:51442721-51442740 Msa0686820:CDS 45.0%
GATATTAGGGGGAGGATTGA+AGG - chr4_4:51442729-51442748 Msa0686820:CDS 45.0%
TATTAGGGGGAGGATTGAAG+GGG - chr4_4:51442731-51442750 Msa0686820:CDS 45.0%
GGAGGATTGAAGGGGAAATT+GGG - chr4_4:51442739-51442758 Msa0686820:CDS 45.0%
ACATTCGCGGGTTTCTGATA+CGG + chr4_4:51442771-51442790 None:intergenic 45.0%
CATATTGCCTTCGTCCAGAT+GGG - chr4_4:51442859-51442878 Msa0686820:CDS 45.0%
! CCGAATGAGGATGGATTTGA+TGG - chr4_4:51442906-51442925 Msa0686820:CDS 45.0%
GTTTGAGAGTCTCCAGTGTA+TGG - chr4_4:51442935-51442954 Msa0686820:CDS 45.0%
TGTATGGGAGGCCAGAATTT+GGG - chr4_4:51442951-51442970 Msa0686820:CDS 45.0%
!!! CGTGTTTTCGAGTCCAAACA+TGG - chr4_4:51442311-51442330 Msa0686820:CDS 45.0%
GTGAAAAATCAGGACCAGGT+GGG + chr4_4:51442425-51442444 None:intergenic 45.0%
TGTGAAAAATCAGGACCAGG+TGG + chr4_4:51442426-51442445 None:intergenic 45.0%
GTGTGTGAAAAATCAGGACC+AGG + chr4_4:51442429-51442448 None:intergenic 45.0%
ATCTTCAGCAGGGACAATCT+TGG + chr4_4:51442475-51442494 None:intergenic 45.0%
CAACCTGATCATCTTCAGCA+GGG + chr4_4:51442485-51442504 None:intergenic 45.0%
CTGCTGAAGATGATCAGGTT+GGG - chr4_4:51442484-51442503 Msa0686820:CDS 45.0%
ACACTTCAACCTCGCAACTT+CGG + chr4_4:51442700-51442719 None:intergenic 45.0%
! TGCGAGGTTGAAGTGTTTGT+TGG - chr4_4:51442704-51442723 Msa0686820:CDS 45.0%
! TGTTGGTTGATATTAGGGGG+AGG - chr4_4:51442721-51442740 Msa0686820:CDS 45.0%
GATATTAGGGGGAGGATTGA+AGG - chr4_4:51442729-51442748 Msa0686820:CDS 45.0%
TATTAGGGGGAGGATTGAAG+GGG - chr4_4:51442731-51442750 Msa0686820:CDS 45.0%
GGAGGATTGAAGGGGAAATT+GGG - chr4_4:51442739-51442758 Msa0686820:CDS 45.0%
ACATTCGCGGGTTTCTGATA+CGG + chr4_4:51442771-51442790 None:intergenic 45.0%
CATATTGCCTTCGTCCAGAT+GGG - chr4_4:51442859-51442878 Msa0686820:CDS 45.0%
! CCGAATGAGGATGGATTTGA+TGG - chr4_4:51442906-51442925 Msa0686820:CDS 45.0%
GTTTGAGAGTCTCCAGTGTA+TGG - chr4_4:51442935-51442954 Msa0686820:CDS 45.0%
TGTATGGGAGGCCAGAATTT+GGG - chr4_4:51442951-51442970 Msa0686820:CDS 45.0%
ACACGTGTGGGTATGAGTAC+AGG + chr4_4:51442400-51442419 None:intergenic 50.0%
TGTCCCTGCTGAAGATGATC+AGG - chr4_4:51442479-51442498 Msa0686820:CDS 50.0%
CCAACCTGATCATCTTCAGC+AGG + chr4_4:51442486-51442505 None:intergenic 50.0%
CCTGCTGAAGATGATCAGGT+TGG - chr4_4:51442483-51442502 Msa0686820:CDS 50.0%
GAAGTCCAGTAAGAAGCGAC+CGG - chr4_4:51442536-51442555 Msa0686820:CDS 50.0%
ACCGGTTGGGAATAAAGAGG+CGG - chr4_4:51442554-51442573 Msa0686820:CDS 50.0%
ACCGCCTCTTTATTCCCAAC+CGG + chr4_4:51442558-51442577 None:intergenic 50.0%
GGGAGGATTGAAGGGGAAAT+TGG - chr4_4:51442738-51442757 Msa0686820:CDS 50.0%
AATCCCGCGATGAATTTGCC+TGG - chr4_4:51442792-51442811 Msa0686820:CDS 50.0%
AGAGCCAGGCAAATTCATCG+CGG + chr4_4:51442799-51442818 None:intergenic 50.0%
GCATATTGCCTTCGTCCAGA+TGG - chr4_4:51442858-51442877 Msa0686820:CDS 50.0%
CAATCTTCCCATCTGGACGA+AGG + chr4_4:51442869-51442888 None:intergenic 50.0%
TCAGCAGCAATCTTCCCATC+TGG + chr4_4:51442876-51442895 None:intergenic 50.0%
TGGGAAGATTGCTGCTGAAG+TGG - chr4_4:51442878-51442897 Msa0686820:CDS 50.0%
AATTCTGGCCTCCCATACAC+TGG + chr4_4:51442950-51442969 None:intergenic 50.0%
GTGTATGGGAGGCCAGAATT+TGG - chr4_4:51442950-51442969 Msa0686820:CDS 50.0%
GTATGGGAGGCCAGAATTTG+GGG - chr4_4:51442952-51442971 Msa0686820:CDS 50.0%
GATCCTTGAGCCCCAAATTC+TGG + chr4_4:51442965-51442984 None:intergenic 50.0%
CTCAAGGATCTTCGTGGTTG+TGG - chr4_4:51442975-51442994 Msa0686820:CDS 50.0%
AAGGATCTTCGTGGTTGTGG+AGG - chr4_4:51442978-51442997 Msa0686820:CDS 50.0%
ACACGTGTGGGTATGAGTAC+AGG + chr4_4:51442400-51442419 None:intergenic 50.0%
TGTCCCTGCTGAAGATGATC+AGG - chr4_4:51442479-51442498 Msa0686820:CDS 50.0%
CCAACCTGATCATCTTCAGC+AGG + chr4_4:51442486-51442505 None:intergenic 50.0%
CCTGCTGAAGATGATCAGGT+TGG - chr4_4:51442483-51442502 Msa0686820:CDS 50.0%
GAAGTCCAGTAAGAAGCGAC+CGG - chr4_4:51442536-51442555 Msa0686820:CDS 50.0%
ACCGGTTGGGAATAAAGAGG+CGG - chr4_4:51442554-51442573 Msa0686820:CDS 50.0%
ACCGCCTCTTTATTCCCAAC+CGG + chr4_4:51442558-51442577 None:intergenic 50.0%
GGGAGGATTGAAGGGGAAAT+TGG - chr4_4:51442738-51442757 Msa0686820:CDS 50.0%
AATCCCGCGATGAATTTGCC+TGG - chr4_4:51442792-51442811 Msa0686820:CDS 50.0%
AGAGCCAGGCAAATTCATCG+CGG + chr4_4:51442799-51442818 None:intergenic 50.0%
GCATATTGCCTTCGTCCAGA+TGG - chr4_4:51442858-51442877 Msa0686820:CDS 50.0%
CAATCTTCCCATCTGGACGA+AGG + chr4_4:51442869-51442888 None:intergenic 50.0%
TCAGCAGCAATCTTCCCATC+TGG + chr4_4:51442876-51442895 None:intergenic 50.0%
TGGGAAGATTGCTGCTGAAG+TGG - chr4_4:51442878-51442897 Msa0686820:CDS 50.0%
AATTCTGGCCTCCCATACAC+TGG + chr4_4:51442950-51442969 None:intergenic 50.0%
GTGTATGGGAGGCCAGAATT+TGG - chr4_4:51442950-51442969 Msa0686820:CDS 50.0%
GTATGGGAGGCCAGAATTTG+GGG - chr4_4:51442952-51442971 Msa0686820:CDS 50.0%
GATCCTTGAGCCCCAAATTC+TGG + chr4_4:51442965-51442984 None:intergenic 50.0%
CTCAAGGATCTTCGTGGTTG+TGG - chr4_4:51442975-51442994 Msa0686820:CDS 50.0%
AAGGATCTTCGTGGTTGTGG+AGG - chr4_4:51442978-51442997 Msa0686820:CDS 50.0%
!! ACCAGGTGGGTTACACGTGT+GGG + chr4_4:51442412-51442431 None:intergenic 55.0%
TCCAGTAAGAAGCGACCGGT+TGG - chr4_4:51442540-51442559 Msa0686820:CDS 55.0%
CCAGTAAGAAGCGACCGGTT+GGG - chr4_4:51442541-51442560 Msa0686820:CDS 55.0%
GCGACCGGTTGGGAATAAAG+AGG - chr4_4:51442551-51442570 Msa0686820:CDS 55.0%
GATGAGGAAGTTGCAAGGGC+AGG - chr4_4:51442662-51442681 Msa0686820:CDS 55.0%
ATCGCGGGATTCACATTCGC+GGG + chr4_4:51442783-51442802 None:intergenic 55.0%
CATCGCGGGATTCACATTCG+CGG + chr4_4:51442784-51442803 None:intergenic 55.0%
GAGCCAGGCAAATTCATCGC+GGG + chr4_4:51442798-51442817 None:intergenic 55.0%
GGGTTCATCACATGAGAGCC+AGG + chr4_4:51442813-51442832 None:intergenic 55.0%
TGAAGTGGCGTTGCCGAATG+AGG - chr4_4:51442893-51442912 Msa0686820:CDS 55.0%
GAGAGTCTCCAGTGTATGGG+AGG - chr4_4:51442939-51442958 Msa0686820:CDS 55.0%
! AGGCCAGAATTTGGGGCTCA+AGG - chr4_4:51442959-51442978 Msa0686820:CDS 55.0%
TTGGGGCTCAAGGATCTTCG+TGG - chr4_4:51442969-51442988 Msa0686820:CDS 55.0%
GATCTTCGTGGTTGTGGAGG+TGG - chr4_4:51442981-51443000 Msa0686820:CDS 55.0%
!! ACCAGGTGGGTTACACGTGT+GGG + chr4_4:51442412-51442431 None:intergenic 55.0%
TCCAGTAAGAAGCGACCGGT+TGG - chr4_4:51442540-51442559 Msa0686820:CDS 55.0%
CCAGTAAGAAGCGACCGGTT+GGG - chr4_4:51442541-51442560 Msa0686820:CDS 55.0%
GCGACCGGTTGGGAATAAAG+AGG - chr4_4:51442551-51442570 Msa0686820:CDS 55.0%
GATGAGGAAGTTGCAAGGGC+AGG - chr4_4:51442662-51442681 Msa0686820:CDS 55.0%
ATCGCGGGATTCACATTCGC+GGG + chr4_4:51442783-51442802 None:intergenic 55.0%
CATCGCGGGATTCACATTCG+CGG + chr4_4:51442784-51442803 None:intergenic 55.0%
GAGCCAGGCAAATTCATCGC+GGG + chr4_4:51442798-51442817 None:intergenic 55.0%
GGGTTCATCACATGAGAGCC+AGG + chr4_4:51442813-51442832 None:intergenic 55.0%
TGAAGTGGCGTTGCCGAATG+AGG - chr4_4:51442893-51442912 Msa0686820:CDS 55.0%
GAGAGTCTCCAGTGTATGGG+AGG - chr4_4:51442939-51442958 Msa0686820:CDS 55.0%
! AGGCCAGAATTTGGGGCTCA+AGG - chr4_4:51442959-51442978 Msa0686820:CDS 55.0%
TTGGGGCTCAAGGATCTTCG+TGG - chr4_4:51442969-51442988 Msa0686820:CDS 55.0%
GATCTTCGTGGTTGTGGAGG+TGG - chr4_4:51442981-51443000 Msa0686820:CDS 55.0%
ACCCACACGTGTAACCCACC+TGG - chr4_4:51442408-51442427 Msa0686820:CDS 60.0%
!! GACCAGGTGGGTTACACGTG+TGG + chr4_4:51442413-51442432 None:intergenic 60.0%
CCCAACCGGTCGCTTCTTAC+TGG + chr4_4:51442544-51442563 None:intergenic 60.0%
GAAAGCTAGGGCTGCGTCGT+TGG - chr4_4:51442599-51442618 Msa0686820:CDS 60.0%
GTTGCAAGGGCAGGCTGCTT+TGG - chr4_4:51442671-51442690 Msa0686820:CDS 60.0%
! CTTTGGAGGCCGAAGTTGCG+AGG - chr4_4:51442688-51442707 Msa0686820:CDS 60.0%
GTGGCGTTGCCGAATGAGGA+TGG - chr4_4:51442897-51442916 Msa0686820:CDS 60.0%
TCGTGGTTGTGGAGGTGGAC+CGG - chr4_4:51442986-51443005 Msa0686820:CDS 60.0%
ACCCACACGTGTAACCCACC+TGG - chr4_4:51442408-51442427 Msa0686820:CDS 60.0%
!! GACCAGGTGGGTTACACGTG+TGG + chr4_4:51442413-51442432 None:intergenic 60.0%
CCCAACCGGTCGCTTCTTAC+TGG + chr4_4:51442544-51442563 None:intergenic 60.0%
GAAAGCTAGGGCTGCGTCGT+TGG - chr4_4:51442599-51442618 Msa0686820:CDS 60.0%
GTTGCAAGGGCAGGCTGCTT+TGG - chr4_4:51442671-51442690 Msa0686820:CDS 60.0%
! CTTTGGAGGCCGAAGTTGCG+AGG - chr4_4:51442688-51442707 Msa0686820:CDS 60.0%
GTGGCGTTGCCGAATGAGGA+TGG - chr4_4:51442897-51442916 Msa0686820:CDS 60.0%
TCGTGGTTGTGGAGGTGGAC+CGG - chr4_4:51442986-51443005 Msa0686820:CDS 60.0%
AGCTAGGGCTGCGTCGTTGG+AGG - chr4_4:51442602-51442621 Msa0686820:CDS 65.0%
GGCTGCGTCGTTGGAGGATG+AGG - chr4_4:51442608-51442627 Msa0686820:CDS 65.0%
! GCAAGGGCAGGCTGCTTTGG+AGG - chr4_4:51442674-51442693 Msa0686820:CDS 65.0%
AGCTAGGGCTGCGTCGTTGG+AGG - chr4_4:51442602-51442621 Msa0686820:CDS 65.0%
GGCTGCGTCGTTGGAGGATG+AGG - chr4_4:51442608-51442627 Msa0686820:CDS 65.0%
! GCAAGGGCAGGCTGCTTTGG+AGG - chr4_4:51442674-51442693 Msa0686820:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 51442276 51443061 51442276 ID=Msa0686820;Name=Msa0686820
chr4_4 mRNA 51442276 51443061 51442276 ID=Msa0686820-mRNA-1;Parent=Msa0686820;Name=Msa0686820-mRNA-1;_AED=0.29;_eAED=0.29;_QI=0|-1|0|1|-1|1|1|0|261
chr4_4 exon 51442276 51443061 51442276 ID=Msa0686820-mRNA-1:exon:13318;Parent=Msa0686820-mRNA-1
chr4_4 CDS 51442276 51443061 51442276 ID=Msa0686820-mRNA-1:cds;Parent=Msa0686820-mRNA-1
Gene Sequence

>Msa0686820

ATGGAAGACGGTGAACTTGATTTCTCAAATCAAGACGTGTTTTCGAGTCCAAACATGGCTGAATTTCAAACAAGTGGTTCAATGGATAGTTTTTTTGATGAATTGTTGAAGGATACACACGCCTGTACTCATACCCACACGTGTAACCCACCTGGTCCTGATTTTTCACACACTCACACGTGTTATCATGTTCACACCAAGATTGTCCCTGCTGAAGATGATCAGGTTGGGACTGATGATACTGCTGAATCTGCTGAGAAGAAGTCCAGTAAGAAGCGACCGGTTGGGAATAAAGAGGCGGTTAAGAAGTATCGTGAGAAGAAGAAAGCTAGGGCTGCGTCGTTGGAGGATGAGGTCATGAAATTGAGGGCTTTGAATCAGCATTTGATGAGGAAGTTGCAAGGGCAGGCTGCTTTGGAGGCCGAAGTTGCGAGGTTGAAGTGTTTGTTGGTTGATATTAGGGGGAGGATTGAAGGGGAAATTGGGTCGTTTCCGTATCAGAAACCCGCGAATGTGAATCCCGCGATGAATTTGCCTGGCTCTCATGTGATGAACCCTTGTAATGTGCAGTGTGATGATCGGGCATATTGCCTTCGTCCAGATGGGAAGATTGCTGCTGAAGTGGCGTTGCCGAATGAGGATGGATTTGATGGTTGTGAGTTTGAGAGTCTCCAGTGTATGGGAGGCCAGAATTTGGGGCTCAAGGATCTTCGTGGTTGTGGAGGTGGACCGGCGTTGTCTAATGTCAATTCTCAAGCTTCCAGTAAAAGAAAAGGTGATGACTGA

Protein sequence

>Msa0686820

MEDGELDFSNQDVFSSPNMAEFQTSGSMDSFFDELLKDTHACTHTHTCNPPGPDFSHTHTCYHVHTKIVPAEDDQVGTDDTAESAEKKSSKKRPVGNKEAVKKYREKKKARAASLEDEVMKLRALNQHLMRKLQGQAALEAEVARLKCLLVDIRGRIEGEIGSFPYQKPANVNPAMNLPGSHVMNPCNVQCDDRAYCLRPDGKIAAEVALPNEDGFDGCEFESLQCMGGQNLGLKDLRGCGGGPALSNVNSQASSKRKGDD*