AlfalfaGEDB | Msa0647890

M. sativa cultivar zhongmu-4 / Msa0647890

KEGG: K00434
GO: -
PFAM: PF00141.26

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647890	AIY27528.1	99.600	250	1	0	1	250	1	250	0.0	507

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647890	sp\|P48534\|APX1_PEA	95.200	250	12	0	1	250	1	250	1.72e-177	490

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647890	A0A0H3UW77	99.600	250	1	0	1	250	1	250	0.0	507

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0647890	Msa0683350	0.811699	6.144091e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647890	MtrunA17_Chr4g0030171	98.800	250	3	0	1	250	1	250	0.0	504
Msa0647890	MtrunA17_Chr5g0405731	64.167	240	85	1	8	247	6	244	4.36e-114	328
Msa0647890	MtrunA17_Chr4g0037131	63.223	242	88	1	7	248	6	246	2.79e-110	319
Msa0647890	MtrunA17_Chr3g0124821	46.094	256	112	6	16	246	101	355	2.19e-68	216
Msa0647890	MtrunA17_Chr3g0137751	39.831	236	119	7	20	246	93	314	4.84e-41	143
Msa0647890	MtrunA17_Chr4g0068621	30.698	215	105	8	73	248	112	321	1.17e-15	75.1
Msa0647890	MtrunA17_Chr6g0477071	29.469	207	111	7	73	249	127	328	3.90e-15	73.9
Msa0647890	MtrunA17_Chr8g0379871	82.353	34	6	0	66	99	3	36	6.17e-13	61.6

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0647890	AT1G07890.2	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.8	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.4	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.7	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.1	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.3	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.5	81.200	250	47	0	1	250	1	250	2.09e-156	434
Msa0647890	AT1G07890.6	80.972	247	47	0	1	247	1	247	1.30e-154	430
Msa0647890	AT3G09640.2	81.781	247	44	1	3	249	4	249	3.35e-150	419
Msa0647890	AT3G09640.1	81.781	247	44	1	3	249	4	249	3.35e-150	419

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Find 131 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAACTTACGCCAAA+CGG	0.488936	4_3:+54166373	None:intergenic
AAATCAGCATAGCTAATGAT+TGG	0.419318	4_3:+54165808	None:intergenic
AACAACACGTAGTTATAAGG+AGG	0.649629	4_3:+54166817	None:intergenic
AACACCACACACCGTTCCTT+AGG	0.567834	4_3:+54163909	None:intergenic
AACATACCTCCCTACCGGGG+TGG	0.629201	4_3:+54165638	None:intergenic
AACGGTGTGTGGTGTTTGAG+AGG	0.635361	4_3:-54163902	Msa0647890:three_prime_UTR
AAGAAAATGTTGAAAGGTCT+TGG	0.292098	4_3:+54167022	None:intergenic
AAGACAATTAAACGCTAGAC+GGG	0.559081	4_3:+54163643	None:intergenic
AAGATTAAGAAAATGTTGAA+AGG	0.588625	4_3:+54167016	None:intergenic
AAGCCTGAGCCACCACCAGA+GGG	0.625588	4_3:-54165001	Msa0647890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAATGTTGAAAGGTCTT+GGG	+	chr4_3:54163620-54163639	None:intergenic	30.0%
AAGAAAATGTTGAAAGGTCT+TGG	+	chr4_3:54163621-54163640	None:intergenic	30.0%
TCGAAATCTAAGAAGGAAAA+TGG	+	chr4_3:54163925-54163944	None:intergenic	30.0%
TTTGATTCAAAGACAAAGAC+TGG	-	chr4_3:54164706-54164725	Msa0647890:intron	30.0%
AATCAGCATAGCTAATGATT+GGG	+	chr4_3:54164834-54164853	None:intergenic	30.0%
AAATCAGCATAGCTAATGAT+TGG	+	chr4_3:54164835-54164854	None:intergenic	30.0%
AAATACAACAAATCACTACC+TGG	+	chr4_3:54164861-54164880	None:intergenic	30.0%
TGGATTTCATACATTTCTGT+TGG	-	chr4_3:54165405-54165424	Msa0647890:intron	30.0%
AATTAACCACATGTGATAAC+TGG	-	chr4_3:54165508-54165527	Msa0647890:intron	30.0%
TATGAGTTGTCAAAAATGAG+AGG	+	chr4_3:54166214-54166233	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	54163611	54167051	54163611	ID=Msa0647890;Name=Msa0647890
chr4_3	mRNA	54163611	54167051	54163611	ID=Msa0647890-mRNA-1;Parent=Msa0647890;Name=Msa0647890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=347\|1\|1\|1\|0.88\|0.8\|10\|316\|250
chr4_3	exon	54163611	54163942	54163611	ID=Msa0647890-mRNA-1:exon:13641;Parent=Msa0647890-mRNA-1
chr4_3	exon	54164051	54164109	54164051	ID=Msa0647890-mRNA-1:exon:13640;Parent=Msa0647890-mRNA-1
chr4_3	exon	54164224	54164326	54164224	ID=Msa0647890-mRNA-1:exon:13639;Parent=Msa0647890-mRNA-1
chr4_3	exon	54164423	54164502	54164423	ID=Msa0647890-mRNA-1:exon:13638;Parent=Msa0647890-mRNA-1
chr4_3	exon	54164806	54164891	54164806	ID=Msa0647890-mRNA-1:exon:13637;Parent=Msa0647890-mRNA-1
chr4_3	exon	54164978	54165026	54164978	ID=Msa0647890-mRNA-1:exon:13636;Parent=Msa0647890-mRNA-1
chr4_3	exon	54165645	54165710	54165645	ID=Msa0647890-mRNA-1:exon:13635;Parent=Msa0647890-mRNA-1
chr4_3	exon	54165801	54165975	54165801	ID=Msa0647890-mRNA-1:exon:13634;Parent=Msa0647890-mRNA-1
chr4_3	exon	54166387	54166517	54166387	ID=Msa0647890-mRNA-1:exon:13633;Parent=Msa0647890-mRNA-1
chr4_3	exon	54166717	54167051	54166717	ID=Msa0647890-mRNA-1:exon:13632;Parent=Msa0647890-mRNA-1
chr4_3	five_prime_UTR	54166717	54167051	54166717	ID=Msa0647890-mRNA-1:five_prime_utr;Parent=Msa0647890-mRNA-1
chr4_3	five_prime_UTR	54166506	54166517	54166506	ID=Msa0647890-mRNA-1:five_prime_utr;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54166387	54166505	54166387	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54165801	54165975	54165801	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54165645	54165710	54165645	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54164978	54165026	54164978	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54164806	54164891	54164806	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54164423	54164502	54164423	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54164224	54164326	54164224	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54164051	54164109	54164051	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	CDS	54163927	54163942	54163927	ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1
chr4_3	three_prime_UTR	54163611	54163926	54163611	ID=Msa0647890-mRNA-1:three_prime_utr;Parent=Msa0647890-mRNA-1

Gene Sequence

>Msa0647890

ATGGGAAAATCTTACCCAACCGTGAGTGCTGATTACCAAAAGGCTGTTGAGAAGGCGAAGAGGAAGCTCAGAGGTTTCATCGCTGAGAAGAAATGCGCTCCTCTTATGCTCCGTTTGGCATGGCACTCTGCTGGAACTTTTGATTCAAAGACAAAGACTGGTGGTCCTTTCGGAACCATCAAGCACCAAGCTGAGCTTGCTCATGGTGCTAACAATGGTCTTGATATCGCTGTTAGGCTTTTGGAGCCTCTTAAGGAGCAATTCCCAATCATTAGCTATGCTGATTTCTACCAGTTGGCTGGTGTTGTTGCTGTTGAGATTACTGGTGGACCTGAAGTTCCTTTCCACCCCGGTAGGGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCTGATGCCACCAAGGGTTCTGACCATTTGAGGGATGTGTTTGGCAAAGCTATGGGGCTTAGTGACCAGGACATCGTTGCTCTGTCTGGTGGCCACACCATTGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGCCCATGGACTTCTAATCCTCTCATTTTTGACAACTCATACTTCAAGGAGTTGTTGAGTGGTGAGAAGGAAGGCCTTCTTCAGTTGCCAAGTGATAAGGCACTTTTGAGCGACCCTGTATTCCGCCCACTTGTTGAGAAATATGCTGCCGATGAAGATGCTTTCTTTGCTGATTATGCCGAGGCTCATCAAAAGCTATCTGAGCTTGGATTTGCAGAAGCCTAA

Protein sequence

>Msa0647890

MGKSYPTVSADYQKAVEKAKRKLRGFIAEKKCAPLMLRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPLKEQFPIISYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFKELLSGEKEGLLQLPSDKALLSDPVFRPLVEKYAADEDAFFADYAEAHQKLSELGFAEA*