Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647890 | AIY27528.1 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647890 | sp|P48534|APX1_PEA | 95.200 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 1.72e-177 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647890 | A0A0H3UW77 | 99.600 | 250 | 1 | 0 | 1 | 250 | 1 | 250 | 0.0 | 507 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0647890 | Msa0683350 | 0.811699 | 6.144091e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647890 | MtrunA17_Chr4g0030171 | 98.800 | 250 | 3 | 0 | 1 | 250 | 1 | 250 | 0.0 | 504 |
| Msa0647890 | MtrunA17_Chr5g0405731 | 64.167 | 240 | 85 | 1 | 8 | 247 | 6 | 244 | 4.36e-114 | 328 |
| Msa0647890 | MtrunA17_Chr4g0037131 | 63.223 | 242 | 88 | 1 | 7 | 248 | 6 | 246 | 2.79e-110 | 319 |
| Msa0647890 | MtrunA17_Chr3g0124821 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 2.19e-68 | 216 |
| Msa0647890 | MtrunA17_Chr3g0137751 | 39.831 | 236 | 119 | 7 | 20 | 246 | 93 | 314 | 4.84e-41 | 143 |
| Msa0647890 | MtrunA17_Chr4g0068621 | 30.698 | 215 | 105 | 8 | 73 | 248 | 112 | 321 | 1.17e-15 | 75.1 |
| Msa0647890 | MtrunA17_Chr6g0477071 | 29.469 | 207 | 111 | 7 | 73 | 249 | 127 | 328 | 3.90e-15 | 73.9 |
| Msa0647890 | MtrunA17_Chr8g0379871 | 82.353 | 34 | 6 | 0 | 66 | 99 | 3 | 36 | 6.17e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0647890 | AT1G07890.2 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.8 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.4 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.7 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.1 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.3 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.5 | 81.200 | 250 | 47 | 0 | 1 | 250 | 1 | 250 | 2.09e-156 | 434 |
| Msa0647890 | AT1G07890.6 | 80.972 | 247 | 47 | 0 | 1 | 247 | 1 | 247 | 1.30e-154 | 430 |
| Msa0647890 | AT3G09640.2 | 81.781 | 247 | 44 | 1 | 3 | 249 | 4 | 249 | 3.35e-150 | 419 |
| Msa0647890 | AT3G09640.1 | 81.781 | 247 | 44 | 1 | 3 | 249 | 4 | 249 | 3.35e-150 | 419 |
| Msa0647890 | AT4G35000.1 | 66.942 | 242 | 79 | 1 | 6 | 247 | 4 | 244 | 7.45e-117 | 336 |
| Msa0647890 | AT4G35970.1 | 60.166 | 241 | 94 | 2 | 7 | 247 | 4 | 242 | 1.12e-100 | 295 |
| Msa0647890 | AT4G35970.2 | 59.361 | 219 | 87 | 2 | 7 | 225 | 4 | 220 | 1.07e-89 | 265 |
| Msa0647890 | AT1G77490.2 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 6.09e-68 | 216 |
| Msa0647890 | AT1G77490.1 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 6.28e-68 | 216 |
| Msa0647890 | AT4G08390.2 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 4.57e-66 | 209 |
| Msa0647890 | AT4G08390.5 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 4.57e-66 | 209 |
| Msa0647890 | AT4G08390.1 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 4.57e-66 | 209 |
| Msa0647890 | AT4G08390.3 | 46.484 | 256 | 111 | 6 | 16 | 246 | 106 | 360 | 4.65e-66 | 209 |
| Msa0647890 | AT4G08390.4 | 42.969 | 256 | 94 | 8 | 16 | 246 | 107 | 335 | 1.01e-53 | 177 |
| Msa0647890 | AT4G32320.1 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 4.75e-39 | 138 |
| Msa0647890 | AT4G31760.1 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 2.00e-17 | 80.5 |
| Msa0647890 | AT3G28200.1 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 1.81e-14 | 72.0 |
| Msa0647890 | AT4G33420.1 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.12e-13 | 69.7 |
| Msa0647890 | AT4G33420.2 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.32e-13 | 70.1 |
| Msa0647890 | AT4G09010.2 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.41e-13 | 69.3 |
| Msa0647890 | AT4G09010.1 | 27.907 | 258 | 109 | 9 | 28 | 246 | 108 | 327 | 2.02e-13 | 69.3 |
| Msa0647890 | AT4G09010.3 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.44e-13 | 68.6 |
Find 131 sgRNAs with CRISPR-Local
Find 218 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAGACCTTTGCTCTTATTT+TGG | 0.088411 | 4_3:-54163850 | Msa0647890:three_prime_UTR |
| GTGATAATTCCCAGCTATTT+TGG | 0.206378 | 4_3:-54163722 | Msa0647890:three_prime_UTR |
| GTGAAATTTATGTAAGATTC+AGG | 0.216025 | 4_3:+54163871 | None:intergenic |
| TTAGAAGGTTAAGATGAATT+TGG | 0.220376 | 4_3:+54166910 | None:intergenic |
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4_3:-54165679 | Msa0647890:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4_3:-54165851 | Msa0647890:CDS |
| GCTCTCCTCGTGTCACTGTT+AGG | 0.263578 | 4_3:-54166756 | Msa0647890:five_prime_UTR |
| AAGAAAATGTTGAAAGGTCT+TGG | 0.292098 | 4_3:+54167022 | None:intergenic |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4_3:+54166448 | None:intergenic |
| TCGAAATCTAAGAAGGAAAA+TGG | 0.317014 | 4_3:+54166718 | None:intergenic |
| GATTGATTTGAAAAGTTAGA+AGG | 0.335563 | 4_3:+54166895 | None:intergenic |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4_3:+54165897 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4_3:+54164237 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4_3:-54166388 | Msa0647890:CDS |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4_3:-54165922 | Msa0647890:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4_3:+54164998 | None:intergenic |
| ACGAACAACACGTAGTTATA+AGG | 0.383526 | 4_3:+54166814 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4_3:-54164477 | Msa0647890:CDS |
| CGTCTAGCGTTTAATTGTCT+TGG | 0.392002 | 4_3:-54163641 | Msa0647890:three_prime_UTR |
| CAGGACATCGTTGCTCTGTC+TGG | 0.408589 | 4_3:-54164819 | Msa0647890:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4_3:-54164274 | Msa0647890:CDS |
| ATGGTCTTGATATCGCTGTT+AGG | 0.416749 | 4_3:-54165858 | Msa0647890:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4_3:+54165808 | None:intergenic |
| ACACGCTCTTTCTTCACTCT+TGG | 0.424674 | 4_3:-54166784 | Msa0647890:five_prime_UTR |
| AGAAAATGTTGAAAGGTCTT+GGG | 0.424795 | 4_3:+54167023 | None:intergenic |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4_3:-54164874 | Msa0647890:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4_3:-54165961 | Msa0647890:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4_3:+54164971 | None:intergenic |
| GATAATCAAACCAAAATAGC+TGG | 0.434443 | 4_3:+54163712 | None:intergenic |
| CCGGGGTGGAAAGGAACTTC+AGG | 0.436434 | 4_3:+54165652 | None:intergenic |
| CTCTCCTCGTGTCACTGTTA+GGG | 0.437435 | 4_3:-54166755 | Msa0647890:five_prime_UTR |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4_3:-54164853 | Msa0647890:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4_3:+54165826 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4_3:-54165934 | Msa0647890:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4_3:-54164469 | Msa0647890:CDS |
| GGAGTTGTTGAGTGGTGAGA+AGG | 0.451456 | 4_3:-54164304 | Msa0647890:CDS |
| AATACACGGTGTGATTTGAT+TGG | 0.452509 | 4_3:+54166940 | None:intergenic |
| TTTGATTGGGTGGGTGAAGT+AGG | 0.455952 | 4_3:+54166954 | None:intergenic |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4_3:-54164875 | Msa0647890:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4_3:+54164992 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4_3:+54166469 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4_3:+54164986 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4_3:-54164864 | Msa0647890:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4_3:-54164050 | Msa0647890:intron |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4_3:-54164051 | Msa0647890:CDS |
| GGGGATTGTGAGGCGTTGGA+TGG | 0.476879 | 4_3:+54166854 | None:intergenic |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4_3:+54164264 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4_3:+54166384 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.479033 | 4_3:-54165703 | Msa0647890:intron |
| CATGCGTAAAGAGCAACATT+GGG | 0.484715 | 4_3:+54163688 | None:intergenic |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4_3:+54166373 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4_3:+54164277 | None:intergenic |
| TGAAATTTATGTAAGATTCA+GGG | 0.497618 | 4_3:+54163872 | None:intergenic |
| CACCATGAGCAAGCTCAGCT+TGG | 0.497717 | 4_3:+54165887 | None:intergenic |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4_3:-54164852 | Msa0647890:CDS |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4_3:+54165809 | None:intergenic |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4_3:+54164862 | None:intergenic |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4_3:-54164468 | Msa0647890:CDS |
| TAAGGAGGAGAAAGTTCTAG+AGG | 0.513052 | 4_3:+54166832 | None:intergenic |
| AAGGAGGAGAAAGTTCTAGA+GGG | 0.513114 | 4_3:+54166833 | None:intergenic |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4_3:-54165889 | Msa0647890:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4_3:-54164838 | Msa0647890:CDS |
| ACCTCCCTACCGGGGTGGAA+AGG | 0.519181 | 4_3:+54165643 | None:intergenic |
| AAGTTCCTTTCCACCCCGGT+AGG | 0.526103 | 4_3:-54165648 | Msa0647890:CDS |
| ATGAGAGGATTAGAAGTCCA+TGG | 0.528007 | 4_3:+54164444 | None:intergenic |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4_3:+54164238 | None:intergenic |
| AGGAGGAGAAAGTTCTAGAG+GGG | 0.536566 | 4_3:+54166834 | None:intergenic |
| GGAGGAGAAAGTTCTAGAGG+GGG | 0.536985 | 4_3:+54166835 | None:intergenic |
| AGTAAACATACCTCCCTACC+GGG | 0.538079 | 4_3:+54165634 | None:intergenic |
| ACATGCGTAAAGAGCAACAT+TGG | 0.541229 | 4_3:+54163687 | None:intergenic |
| CAAGACAATTAAACGCTAGA+CGG | 0.551725 | 4_3:+54163642 | None:intergenic |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4_3:-54166463 | Msa0647890:CDS |
| CAGACAGAGCAACGATGTCC+TGG | 0.552668 | 4_3:+54164820 | None:intergenic |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4_3:+54164964 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4_3:-54164978 | Msa0647890:CDS |
| ACTCACCTCGAAATCTAAGA+AGG | 0.556896 | 4_3:+54166711 | None:intergenic |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4_3:+54166468 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4_3:-54164977 | Msa0647890:intron |
| TAGTAAACATACCTCCCTAC+CGG | 0.557823 | 4_3:+54165633 | None:intergenic |
| AAGACAATTAAACGCTAGAC+GGG | 0.559081 | 4_3:+54163643 | None:intergenic |
| CGTTGGATGGATAAGATCGT+GGG | 0.563175 | 4_3:+54166867 | None:intergenic |
| CACAGATTTGCAGAAGCCTA+AGG | 0.566856 | 4_3:-54163925 | Msa0647890:intron |
| AGTTCCTTTCCACCCCGGTA+GGG | 0.567360 | 4_3:-54165647 | Msa0647890:CDS |
| AACACCACACACCGTTCCTT+AGG | 0.567834 | 4_3:+54163909 | None:intergenic |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4_3:+54164989 | None:intergenic |
| ATAATCAAACCAAAATAGCT+GGG | 0.568691 | 4_3:+54163713 | None:intergenic |
| TCCTTTCCACCCCGGTAGGG+AGG | 0.570416 | 4_3:-54165644 | Msa0647890:intron |
| CACGGTGTGATTTGATTGGG+TGG | 0.574514 | 4_3:+54166944 | None:intergenic |
| ATACACGGTGTGATTTGATT+GGG | 0.574940 | 4_3:+54166941 | None:intergenic |
| GACATCGTTGCTCTGTCTGG+TGG | 0.579861 | 4_3:-54164816 | Msa0647890:CDS |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4_3:+54164225 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4_3:-54166451 | Msa0647890:CDS |
| AAGATTAAGAAAATGTTGAA+AGG | 0.588625 | 4_3:+54167016 | None:intergenic |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4_3:-54164487 | Msa0647890:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4_3:-54165676 | Msa0647890:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4_3:-54165800 | Msa0647890:intron |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4_3:-54165002 | Msa0647890:CDS |
| TTCGTCAATGATGACGAATG+AGG | 0.599893 | 4_3:+54166978 | None:intergenic |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4_3:-54164461 | Msa0647890:CDS |
| GCGTTGGATGGATAAGATCG+TGG | 0.612646 | 4_3:+54166866 | None:intergenic |
| TGAGAGGATTAGAAGTCCAT+GGG | 0.619251 | 4_3:+54164445 | None:intergenic |
| CTTGCTCATGGTGCTAACAA+TGG | 0.619719 | 4_3:-54165877 | Msa0647890:CDS |
| TGAACCCAAAATAAGAGCAA+AGG | 0.622634 | 4_3:+54163845 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4_3:-54165001 | Msa0647890:CDS |
| AACATACCTCCCTACCGGGG+TGG | 0.629201 | 4_3:+54165638 | None:intergenic |
| TGTGTGGTGTTTGAGAGGCA+TGG | 0.630213 | 4_3:-54163897 | Msa0647890:three_prime_UTR |
| TTAACAATGTTATTTAACAG+AGG | 0.633091 | 4_3:+54163745 | None:intergenic |
| AACGGTGTGTGGTGTTTGAG+AGG | 0.635361 | 4_3:-54163902 | Msa0647890:three_prime_UTR |
| CCTGAAGTTCCTTTCCACCC+CGG | 0.635685 | 4_3:-54165652 | Msa0647890:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4_3:-54165931 | Msa0647890:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4_3:-54164076 | Msa0647890:CDS |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4_3:+54164226 | None:intergenic |
| ATGATTAGGGAGTTGTTGAG+TGG | 0.643761 | 4_3:-54164312 | Msa0647890:intron |
| ATGCGTAAAGAGCAACATTG+GGG | 0.644752 | 4_3:+54163689 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4_3:-54166443 | Msa0647890:CDS |
| AACAACACGTAGTTATAAGG+AGG | 0.649629 | 4_3:+54166817 | None:intergenic |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4_3:-54164851 | Msa0647890:CDS |
| AATTTGGACGTGTGAATACA+CGG | 0.651495 | 4_3:+54166926 | None:intergenic |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4_3:+54164793 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4_3:-54166432 | Msa0647890:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4_3:+54165907 | None:intergenic |
| TTGTTGAGTGGTGAGAAGGA+AGG | 0.665752 | 4_3:-54164300 | Msa0647890:CDS |
| ACGGTGTGATTTGATTGGGT+GGG | 0.674529 | 4_3:+54166945 | None:intergenic |
| GAAGCCTAAGGAACGGTGTG+TGG | 0.679711 | 4_3:-54163913 | Msa0647890:exon |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4_3:+54164229 | None:intergenic |
| ATTTGCAGAAGCCTAAGGAA+CGG | 0.693212 | 4_3:-54163920 | Msa0647890:exon |
| TTTGCTAGACATGATGAACG+TGG | 0.694653 | 4_3:-54163795 | Msa0647890:three_prime_UTR |
| TGCGTAAAGAGCAACATTGG+GGG | 0.714453 | 4_3:+54163690 | None:intergenic |
| GTTGGATGGATAAGATCGTG+GGG | 0.723472 | 4_3:+54166868 | None:intergenic |
| GTAAACATACCTCCCTACCG+GGG | 0.735340 | 4_3:+54165635 | None:intergenic |
| TGAACCCTAACAGTGACACG+AGG | 0.770546 | 4_3:+54166751 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAAAAAAAAAAACTCA+AGG | + | chr4_3:54165204-54165223 | None:intergenic | 10.0% |
| !! | CCAAATATAAAAAATAAATA+GGG | + | chr4_3:54165579-54165598 | None:intergenic | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | + | chr4_3:54165580-54165599 | None:intergenic | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | - | chr4_3:54165579-54165598 | Msa0647890:intron | 10.0% |
| !!! | TTTAAAACACAAAAAAAATA+GGG | + | chr4_3:54166278-54166297 | None:intergenic | 10.0% |
| !!! | ATTTAAAACACAAAAAAAAT+AGG | + | chr4_3:54166279-54166298 | None:intergenic | 10.0% |
| !! | AATATATATATTTATCTTCA+AGG | - | chr4_3:54166621-54166640 | Msa0647890:intron | 10.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | - | chr4_3:54164478-54164497 | Msa0647890:CDS | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | - | chr4_3:54165576-54165595 | Msa0647890:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | - | chr4_3:54165929-54165948 | Msa0647890:CDS | 15.0% |
| !!! | ATTATCTAAGTTTTAAACTA+TGG | - | chr4_3:54165993-54166012 | Msa0647890:intron | 15.0% |
| !! | AGGAATATTAAATATACATA+CGG | + | chr4_3:54166440-54166459 | None:intergenic | 15.0% |
| !! | AAGATTAAGAAAATGTTGAA+AGG | + | chr4_3:54163627-54163646 | None:intergenic | 20.0% |
| !! | AGAAAAATAAGCTCAAAAAA+TGG | + | chr4_3:54164054-54164073 | None:intergenic | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | - | chr4_3:54164285-54164304 | Msa0647890:CDS | 20.0% |
| !!! | ATGATTTGTTTGAGATTTTT+TGG | - | chr4_3:54164450-54164469 | Msa0647890:CDS | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | - | chr4_3:54164477-54164496 | Msa0647890:CDS | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | - | chr4_3:54164487-54164506 | Msa0647890:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | - | chr4_3:54165087-54165106 | Msa0647890:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | - | chr4_3:54165140-54165159 | Msa0647890:intron | 20.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | + | chr4_3:54165614-54165633 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | - | chr4_3:54165614-54165633 | Msa0647890:intron | 20.0% |
| !! | AAACAACTACAATTAATTGT+AGG | + | chr4_3:54165721-54165740 | None:intergenic | 20.0% |
| !! | TACAATTAATTGTAGTTGTT+TGG | - | chr4_3:54165720-54165739 | Msa0647890:intron | 20.0% |
| !!! | TTTAAAGTCAATACATACAA+TGG | + | chr4_3:54165855-54165874 | None:intergenic | 20.0% |
| !! | TTGGTTATACTAAATGTAAT+TGG | - | chr4_3:54166134-54166153 | Msa0647890:intron | 20.0% |
| !! | TTATACTAAATGTAATTGGT+AGG | - | chr4_3:54166138-54166157 | Msa0647890:intron | 20.0% |
| !! | TATACTAAATGTAATTGGTA+GGG | - | chr4_3:54166139-54166158 | Msa0647890:intron | 20.0% |
| !!! | AATCCTTTTCATCATATTAT+TGG | - | chr4_3:54166465-54166484 | Msa0647890:CDS | 20.0% |
| !! | TGAAATTTATGTAAGATTCA+GGG | + | chr4_3:54166771-54166790 | None:intergenic | 20.0% |
| !!! | TTAACAATGTTATTTAACAG+AGG | + | chr4_3:54166898-54166917 | None:intergenic | 20.0% |
| ! | TTAGAAGGTTAAGATGAATT+TGG | + | chr4_3:54163733-54163752 | None:intergenic | 25.0% |
| !!! | GATTGATTTGAAAAGTTAGA+AGG | + | chr4_3:54163748-54163767 | None:intergenic | 25.0% |
| !!! | AATCAGAAGAAATTTTTGAG+CGG | + | chr4_3:54163971-54163990 | None:intergenic | 25.0% |
| !! | TTGCAGAAATTTTAAGCTAT+GGG | - | chr4_3:54164139-54164158 | Msa0647890:intron | 25.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | + | chr4_3:54164270-54164289 | None:intergenic | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | - | chr4_3:54164488-54164507 | Msa0647890:intron | 25.0% |
| !!! | TTATGATTTGTTTGTGTAGA+TGG | - | chr4_3:54164668-54164687 | Msa0647890:intron | 25.0% |
| !!! | ATTTCAGTCATTGATTTATG+TGG | - | chr4_3:54164908-54164927 | Msa0647890:intron | 25.0% |
| !!! | ATTTATGTGGTTTGTTTTTG+TGG | - | chr4_3:54164921-54164940 | Msa0647890:intron | 25.0% |
| ! | TTTCTCATTGTTGATGTAAA+TGG | - | chr4_3:54165037-54165056 | Msa0647890:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | - | chr4_3:54165158-54165177 | Msa0647890:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | - | chr4_3:54165172-54165191 | Msa0647890:intron | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | - | chr4_3:54165296-54165315 | Msa0647890:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | + | chr4_3:54165391-54165410 | None:intergenic | 25.0% |
| !! | TTTTATATTTGGAGGCTAAT+TGG | - | chr4_3:54165587-54165606 | Msa0647890:intron | 25.0% |
| !! | ATTTGATTCTTGATTTTTGC+AGG | - | chr4_3:54165749-54165768 | Msa0647890:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | - | chr4_3:54165902-54165921 | Msa0647890:CDS | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | - | chr4_3:54165902-54165921 | Msa0647890:CDS | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | - | chr4_3:54166314-54166333 | Msa0647890:intron | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | - | chr4_3:54166315-54166334 | Msa0647890:intron | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | + | chr4_3:54166460-54166479 | None:intergenic | 25.0% |
| ! | ATGCCAATAATATGATGAAA+AGG | + | chr4_3:54166471-54166490 | None:intergenic | 25.0% |
| ! | GTGAAATTTATGTAAGATTC+AGG | + | chr4_3:54166772-54166791 | None:intergenic | 25.0% |
| ! | ATAATCAAACCAAAATAGCT+GGG | + | chr4_3:54166930-54166949 | None:intergenic | 25.0% |
| AGAAAATGTTGAAAGGTCTT+GGG | + | chr4_3:54163620-54163639 | None:intergenic | 30.0% | |
| AAGAAAATGTTGAAAGGTCT+TGG | + | chr4_3:54163621-54163640 | None:intergenic | 30.0% | |
| TCGAAATCTAAGAAGGAAAA+TGG | + | chr4_3:54163925-54163944 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTCTTAGATTTCG+AGG | - | chr4_3:54163924-54163943 | Msa0647890:intron | 30.0% |
| ! | AACTTCGATTCTGAGAAAAT+AGG | + | chr4_3:54163996-54164015 | None:intergenic | 30.0% |
| ! | GTTGCAGAAATTTTAAGCTA+TGG | - | chr4_3:54164138-54164157 | Msa0647890:intron | 30.0% |
| TTTGATTCAAAGACAAAGAC+TGG | - | chr4_3:54164706-54164725 | Msa0647890:intron | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | + | chr4_3:54164834-54164853 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | + | chr4_3:54164835-54164854 | None:intergenic | 30.0% | |
| AAATACAACAAATCACTACC+TGG | + | chr4_3:54164861-54164880 | None:intergenic | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | - | chr4_3:54165385-54165404 | Msa0647890:intron | 30.0% |
| TGGATTTCATACATTTCTGT+TGG | - | chr4_3:54165405-54165424 | Msa0647890:intron | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | - | chr4_3:54165508-54165527 | Msa0647890:intron | 30.0% | |
| TATGAGTTGTCAAAAATGAG+AGG | + | chr4_3:54166214-54166233 | None:intergenic | 30.0% | |
| ACACAAAAAAAATAGGGCAT+GGG | + | chr4_3:54166272-54166291 | None:intergenic | 30.0% | |
| AACACAAAAAAAATAGGGCA+TGG | + | chr4_3:54166273-54166292 | None:intergenic | 30.0% | |
| GATAATCAAACCAAAATAGC+TGG | + | chr4_3:54166931-54166950 | None:intergenic | 30.0% | |
| ATACACGGTGTGATTTGATT+GGG | + | chr4_3:54163702-54163721 | None:intergenic | 35.0% | |
| AATACACGGTGTGATTTGAT+TGG | + | chr4_3:54163703-54163722 | None:intergenic | 35.0% | |
| AATTTGGACGTGTGAATACA+CGG | + | chr4_3:54163717-54163736 | None:intergenic | 35.0% | |
| AACAACACGTAGTTATAAGG+AGG | + | chr4_3:54163826-54163845 | None:intergenic | 35.0% | |
| ACGAACAACACGTAGTTATA+AGG | + | chr4_3:54163829-54163848 | None:intergenic | 35.0% | |
| !! | TGTTTTTGTGGTTATGCAGT+TGG | - | chr4_3:54164933-54164952 | Msa0647890:intron | 35.0% |
| !! | GGAGGTATGTTTACTACTTT+TGG | - | chr4_3:54165014-54165033 | Msa0647890:intron | 35.0% |
| ATTGCAAATGCGTTTCAAAC+AGG | + | chr4_3:54165291-54165310 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | + | chr4_3:54165367-54165386 | None:intergenic | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | + | chr4_3:54165434-54165453 | None:intergenic | 35.0% | |
| !! | GCATTTCTAGTTATCACATG+AGG | + | chr4_3:54165469-54165488 | None:intergenic | 35.0% |
| !! | GCTAATTGGTCCTTTTGTTT+TGG | - | chr4_3:54165601-54165620 | Msa0647890:intron | 35.0% |
| AGTCAATACATACAATGGTG+TGG | + | chr4_3:54165850-54165869 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | - | chr4_3:54165940-54165959 | Msa0647890:CDS | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | - | chr4_3:54165940-54165959 | Msa0647890:CDS | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | + | chr4_3:54166417-54166436 | None:intergenic | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | - | chr4_3:54166531-54166550 | Msa0647890:intron | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | - | chr4_3:54166590-54166609 | Msa0647890:intron | 35.0% | |
| !! | ACAGACCTTTGCTCTTATTT+TGG | - | chr4_3:54166790-54166809 | Msa0647890:five_prime_UTR | 35.0% |
| !!! | CAGACCTTTGCTCTTATTTT+GGG | - | chr4_3:54166791-54166810 | Msa0647890:five_prime_UTR | 35.0% |
| TGAACCCAAAATAAGAGCAA+AGG | + | chr4_3:54166798-54166817 | None:intergenic | 35.0% | |
| !!! | TATTTTGGGTTCATCGAAGT+TGG | - | chr4_3:54166805-54166824 | Msa0647890:five_prime_UTR | 35.0% |
| !!! | ATTTTGGGTTCATCGAAGTT+GGG | - | chr4_3:54166806-54166825 | Msa0647890:five_prime_UTR | 35.0% |
| ! | GTGATAATTCCCAGCTATTT+TGG | - | chr4_3:54166918-54166937 | Msa0647890:five_prime_UTR | 35.0% |
| AAGACAATTAAACGCTAGAC+GGG | + | chr4_3:54167000-54167019 | None:intergenic | 35.0% | |
| CAAGACAATTAAACGCTAGA+CGG | + | chr4_3:54167001-54167020 | None:intergenic | 35.0% | |
| ! | TTCGTCAATGATGACGAATG+AGG | + | chr4_3:54163665-54163684 | None:intergenic | 40.0% |
| !! | AAGGAGGAGAAAGTTCTAGA+GGG | + | chr4_3:54163810-54163829 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGAAAGTTCTAG+AGG | + | chr4_3:54163811-54163830 | None:intergenic | 40.0% |
| ACTCACCTCGAAATCTAAGA+AGG | + | chr4_3:54163932-54163951 | None:intergenic | 40.0% | |
| !! | CTTTTGGTAATCAGCACTCA+CGG | + | chr4_3:54164179-54164198 | None:intergenic | 40.0% |
| TTACCAAAAGGCTGTTGAGA+AGG | - | chr4_3:54164189-54164208 | Msa0647890:intron | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | - | chr4_3:54164709-54164728 | Msa0647890:intron | 40.0% | |
| ! | ATGGTCTTGATATCGCTGTT+AGG | - | chr4_3:54164782-54164801 | Msa0647890:intron | 40.0% |
| ! | TGATATCGCTGTTAGGCTTT+TGG | - | chr4_3:54164789-54164808 | Msa0647890:intron | 40.0% |
| ATTGGGAATTGCTCCTTAAG+AGG | + | chr4_3:54164817-54164836 | None:intergenic | 40.0% | |
| !! | TAGCTATGCTGATTTCTACC+AGG | - | chr4_3:54164840-54164859 | Msa0647890:CDS | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | - | chr4_3:54164961-54164980 | Msa0647890:intron | 40.0% |
| TAGTAAACATACCTCCCTAC+CGG | + | chr4_3:54165010-54165029 | None:intergenic | 40.0% | |
| TCTAGTTATCACATGAGGAC+AGG | + | chr4_3:54165464-54165483 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | + | chr4_3:54165517-54165536 | None:intergenic | 40.0% | |
| AAATCCAGAACACTAACCCT+TGG | + | chr4_3:54165682-54165701 | None:intergenic | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | - | chr4_3:54165788-54165807 | Msa0647890:intron | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | - | chr4_3:54165789-54165808 | Msa0647890:intron | 40.0% | |
| ! | CGTTGAGATTGTGACTGTTT+TGG | - | chr4_3:54166115-54166134 | Msa0647890:intron | 40.0% |
| TGAGAGGATTAGAAGTCCAT+GGG | + | chr4_3:54166198-54166217 | None:intergenic | 40.0% | |
| ATGAGAGGATTAGAAGTCCA+TGG | + | chr4_3:54166199-54166218 | None:intergenic | 40.0% | |
| ATGATTAGGGAGTTGTTGAG+TGG | - | chr4_3:54166328-54166347 | Msa0647890:intron | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | + | chr4_3:54166366-54166385 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | - | chr4_3:54166366-54166385 | Msa0647890:intron | 40.0% | |
| !! | CTCAAAAGTGCCTTATCACT+TGG | + | chr4_3:54166379-54166398 | None:intergenic | 40.0% |
| CATATTTCTCAACAAGTGGG+CGG | + | chr4_3:54166414-54166433 | None:intergenic | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | + | chr4_3:54166418-54166437 | None:intergenic | 40.0% | |
| ! | TTTCTTTGCTGATTATGCCG+AGG | - | chr4_3:54166564-54166583 | Msa0647890:intron | 40.0% |
| ! | AGATAGCTTTTGATGAGCCT+CGG | + | chr4_3:54166584-54166603 | None:intergenic | 40.0% |
| CATCAAAAGCTATCTGAGCT+TGG | - | chr4_3:54166589-54166608 | Msa0647890:intron | 40.0% | |
| ATTTGCAGAAGCCTAAGGAA+CGG | - | chr4_3:54166720-54166739 | Msa0647890:five_prime_UTR | 40.0% | |
| ! | CATCGAAGTTGGGTAGTTTT+TGG | - | chr4_3:54166816-54166835 | Msa0647890:five_prime_UTR | 40.0% |
| TTTGCTAGACATGATGAACG+TGG | - | chr4_3:54166845-54166864 | Msa0647890:five_prime_UTR | 40.0% | |
| ATGCGTAAAGAGCAACATTG+GGG | + | chr4_3:54166954-54166973 | None:intergenic | 40.0% | |
| CATGCGTAAAGAGCAACATT+GGG | + | chr4_3:54166955-54166974 | None:intergenic | 40.0% | |
| ACATGCGTAAAGAGCAACAT+TGG | + | chr4_3:54166956-54166975 | None:intergenic | 40.0% | |
| CGTCTAGCGTTTAATTGTCT+TGG | - | chr4_3:54166999-54167018 | Msa0647890:five_prime_UTR | 40.0% | |
| TTTGATTGGGTGGGTGAAGT+AGG | + | chr4_3:54163689-54163708 | None:intergenic | 45.0% | |
| ACGGTGTGATTTGATTGGGT+GGG | + | chr4_3:54163698-54163717 | None:intergenic | 45.0% | |
| GTTGGATGGATAAGATCGTG+GGG | + | chr4_3:54163775-54163794 | None:intergenic | 45.0% | |
| CGTTGGATGGATAAGATCGT+GGG | + | chr4_3:54163776-54163795 | None:intergenic | 45.0% | |
| !! | AGGAGGAGAAAGTTCTAGAG+GGG | + | chr4_3:54163809-54163828 | None:intergenic | 45.0% |
| ACACGCTCTTTCTTCACTCT+TGG | - | chr4_3:54163856-54163875 | Msa0647890:three_prime_UTR | 45.0% | |
| !! | CGTGAGTGCTGATTACCAAA+AGG | - | chr4_3:54164177-54164196 | Msa0647890:intron | 45.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | - | chr4_3:54164718-54164737 | Msa0647890:intron | 45.0% | |
| ! | CTTGCTCATGGTGCTAACAA+TGG | - | chr4_3:54164763-54164782 | Msa0647890:intron | 45.0% |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | - | chr4_3:54164801-54164820 | Msa0647890:intron | 45.0% |
| TTTGTGGTTATGCAGTTGGC+TGG | - | chr4_3:54164937-54164956 | Msa0647890:intron | 45.0% | |
| ! | GTTGCTGTTGAGATTACTGG+TGG | - | chr4_3:54164964-54164983 | Msa0647890:intron | 45.0% |
| AGTAAACATACCTCCCTACC+GGG | + | chr4_3:54165009-54165028 | None:intergenic | 45.0% | |
| TGTCTTGCAGTTCACGTTCT+TGG | - | chr4_3:54165327-54165346 | Msa0647890:intron | 45.0% | |
| ! | TTGCAGGTTCTGACCATTTG+AGG | - | chr4_3:54165765-54165784 | Msa0647890:intron | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | - | chr4_3:54165766-54165785 | Msa0647890:intron | 45.0% |
| GACCATTTGAGGGATGTGTT+TGG | - | chr4_3:54165776-54165795 | Msa0647890:intron | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | + | chr4_3:54165781-54165800 | None:intergenic | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | - | chr4_3:54165787-54165806 | Msa0647890:intron | 45.0% | |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | - | chr4_3:54166172-54166191 | Msa0647890:intron | 45.0% |
| TTGTTGAGTGGTGAGAAGGA+AGG | - | chr4_3:54166340-54166359 | Msa0647890:intron | 45.0% | |
| TTAAGTTCCGCATTGTCCAC+TGG | - | chr4_3:54166664-54166683 | Msa0647890:intron | 45.0% | |
| TAAGTTCCGCATTGTCCACT+GGG | - | chr4_3:54166665-54166684 | Msa0647890:intron | 45.0% | |
| CAACATGAATCAACTCCCAG+TGG | + | chr4_3:54166683-54166702 | None:intergenic | 45.0% | |
| TAGGCTTCTGCAAATCTGTG+TGG | + | chr4_3:54166715-54166734 | None:intergenic | 45.0% | |
| CACAGATTTGCAGAAGCCTA+AGG | - | chr4_3:54166715-54166734 | Msa0647890:intron | 45.0% | |
| TGCGTAAAGAGCAACATTGG+GGG | + | chr4_3:54166953-54166972 | None:intergenic | 45.0% | |
| CACGGTGTGATTTGATTGGG+TGG | + | chr4_3:54163699-54163718 | None:intergenic | 50.0% | |
| GCGTTGGATGGATAAGATCG+TGG | + | chr4_3:54163777-54163796 | None:intergenic | 50.0% | |
| !! | AGTTCTAGAGGGGGATTGTG+AGG | + | chr4_3:54163799-54163818 | None:intergenic | 50.0% |
| !! | GGAGGAGAAAGTTCTAGAGG+GGG | + | chr4_3:54163808-54163827 | None:intergenic | 50.0% |
| ! | CTCTCCTCGTGTCACTGTTA+GGG | - | chr4_3:54163885-54163904 | Msa0647890:three_prime_UTR | 50.0% |
| TGAACCCTAACAGTGACACG+AGG | + | chr4_3:54163892-54163911 | None:intergenic | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | + | chr4_3:54164174-54164193 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | + | chr4_3:54164175-54164194 | None:intergenic | 50.0% | |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | + | chr4_3:54164195-54164214 | None:intergenic | 50.0% |
| TACGCCAAACGGAGCATAAG+AGG | + | chr4_3:54164259-54164278 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | - | chr4_3:54164679-54164698 | Msa0647890:intron | 50.0% | |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | + | chr4_3:54164736-54164755 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | + | chr4_3:54164746-54164765 | None:intergenic | 50.0% |
| GTAAACATACCTCCCTACCG+GGG | + | chr4_3:54165008-54165027 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | + | chr4_3:54165679-54165698 | None:intergenic | 50.0% | |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | - | chr4_3:54166171-54166190 | Msa0647890:intron | 50.0% |
| GGAGTTGTTGAGTGGTGAGA+AGG | - | chr4_3:54166336-54166355 | Msa0647890:intron | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | + | chr4_3:54166405-54166424 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | + | chr4_3:54166406-54166425 | None:intergenic | 50.0% | |
| TCAACTCCCAGTGGACAATG+CGG | + | chr4_3:54166674-54166693 | None:intergenic | 50.0% | |
| AACACCACACACCGTTCCTT+AGG | + | chr4_3:54166734-54166753 | None:intergenic | 50.0% | |
| AACGGTGTGTGGTGTTTGAG+AGG | - | chr4_3:54166738-54166757 | Msa0647890:five_prime_UTR | 50.0% | |
| TGTGTGGTGTTTGAGAGGCA+TGG | - | chr4_3:54166743-54166762 | Msa0647890:five_prime_UTR | 50.0% | |
| ! | GCTCTCCTCGTGTCACTGTT+AGG | - | chr4_3:54163884-54163903 | Msa0647890:three_prime_UTR | 55.0% |
| AGGCTGTTGAGAAGGCGAAG+AGG | - | chr4_3:54164197-54164216 | Msa0647890:intron | 55.0% | |
| AAGGCGAAGAGGAAGCTCAG+AGG | - | chr4_3:54164208-54164227 | Msa0647890:intron | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | - | chr4_3:54164252-54164271 | Msa0647890:CDS | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | - | chr4_3:54164751-54164770 | Msa0647890:intron | 55.0% |
| CACCATGAGCAAGCTCAGCT+TGG | + | chr4_3:54164756-54164775 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+CGG | - | chr4_3:54164988-54165007 | Msa0647890:CDS | 55.0% | |
| AAGTTCCTTTCCACCCCGGT+AGG | - | chr4_3:54164992-54165011 | Msa0647890:CDS | 55.0% | |
| AGTTCCTTTCCACCCCGGTA+GGG | - | chr4_3:54164993-54165012 | Msa0647890:CDS | 55.0% | |
| ! | CACTAACCCTTGGTGGCATC+AGG | + | chr4_3:54165672-54165691 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | - | chr4_3:54165675-54165694 | Msa0647890:CDS | 55.0% |
| AGCTATGGGGCTTAGTGACC+AGG | - | chr4_3:54165802-54165821 | Msa0647890:CDS | 55.0% | |
| CAGACAGAGCAACGATGTCC+TGG | + | chr4_3:54165823-54165842 | None:intergenic | 55.0% | |
| CAGGACATCGTTGCTCTGTC+TGG | - | chr4_3:54165821-54165840 | Msa0647890:CDS | 55.0% | |
| GACATCGTTGCTCTGTCTGG+TGG | - | chr4_3:54165824-54165843 | Msa0647890:CDS | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | - | chr4_3:54166153-54166172 | Msa0647890:intron | 55.0% | |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | - | chr4_3:54166179-54166198 | Msa0647890:intron | 55.0% |
| GAAGCCTAAGGAACGGTGTG+TGG | - | chr4_3:54166727-54166746 | Msa0647890:five_prime_UTR | 55.0% | |
| !! | GGGGATTGTGAGGCGTTGGA+TGG | + | chr4_3:54163789-54163808 | None:intergenic | 60.0% |
| AGAGGGGGATTGTGAGGCGT+TGG | + | chr4_3:54163793-54163812 | None:intergenic | 60.0% | |
| CCGGGGTGGAAAGGAACTTC+AGG | + | chr4_3:54164991-54165010 | None:intergenic | 60.0% | |
| AACATACCTCCCTACCGGGG+TGG | + | chr4_3:54165005-54165024 | None:intergenic | 60.0% | |
| AAGCCTGAGCCACCACCAGA+GGG | - | chr4_3:54165639-54165658 | Msa0647890:intron | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | - | chr4_3:54165662-54165681 | Msa0647890:CDS | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | - | chr4_3:54165663-54165682 | Msa0647890:CDS | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | - | chr4_3:54166163-54166182 | Msa0647890:intron | 60.0% |
| TCCTTTCCACCCCGGTAGGG+AGG | - | chr4_3:54164996-54165015 | Msa0647890:CDS | 65.0% | |
| ACCTCCCTACCGGGGTGGAA+AGG | + | chr4_3:54165000-54165019 | None:intergenic | 65.0% | |
| CAAGCCTGAGCCACCACCAG+AGG | - | chr4_3:54165638-54165657 | Msa0647890:intron | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | + | chr4_3:54165654-54165673 | None:intergenic | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | + | chr4_3:54165657-54165676 | None:intergenic | 65.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | + | chr4_3:54165645-54165664 | None:intergenic | 70.0% |
| GGCAAGCGACCCTCTGGTGG+TGG | + | chr4_3:54165651-54165670 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 54163611 | 54167051 | 54163611 | ID=Msa0647890;Name=Msa0647890 |
| chr4_3 | mRNA | 54163611 | 54167051 | 54163611 | ID=Msa0647890-mRNA-1;Parent=Msa0647890;Name=Msa0647890-mRNA-1;_AED=0.01;_eAED=0.01;_QI=347|1|1|1|0.88|0.8|10|316|250 |
| chr4_3 | exon | 54163611 | 54163942 | 54163611 | ID=Msa0647890-mRNA-1:exon:13641;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54164051 | 54164109 | 54164051 | ID=Msa0647890-mRNA-1:exon:13640;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54164224 | 54164326 | 54164224 | ID=Msa0647890-mRNA-1:exon:13639;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54164423 | 54164502 | 54164423 | ID=Msa0647890-mRNA-1:exon:13638;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54164806 | 54164891 | 54164806 | ID=Msa0647890-mRNA-1:exon:13637;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54164978 | 54165026 | 54164978 | ID=Msa0647890-mRNA-1:exon:13636;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54165645 | 54165710 | 54165645 | ID=Msa0647890-mRNA-1:exon:13635;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54165801 | 54165975 | 54165801 | ID=Msa0647890-mRNA-1:exon:13634;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54166387 | 54166517 | 54166387 | ID=Msa0647890-mRNA-1:exon:13633;Parent=Msa0647890-mRNA-1 |
| chr4_3 | exon | 54166717 | 54167051 | 54166717 | ID=Msa0647890-mRNA-1:exon:13632;Parent=Msa0647890-mRNA-1 |
| chr4_3 | five_prime_UTR | 54166717 | 54167051 | 54166717 | ID=Msa0647890-mRNA-1:five_prime_utr;Parent=Msa0647890-mRNA-1 |
| chr4_3 | five_prime_UTR | 54166506 | 54166517 | 54166506 | ID=Msa0647890-mRNA-1:five_prime_utr;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54166387 | 54166505 | 54166387 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54165801 | 54165975 | 54165801 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54165645 | 54165710 | 54165645 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54164978 | 54165026 | 54164978 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54164806 | 54164891 | 54164806 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54164423 | 54164502 | 54164423 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54164224 | 54164326 | 54164224 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54164051 | 54164109 | 54164051 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | CDS | 54163927 | 54163942 | 54163927 | ID=Msa0647890-mRNA-1:cds;Parent=Msa0647890-mRNA-1 |
| chr4_3 | three_prime_UTR | 54163611 | 54163926 | 54163611 | ID=Msa0647890-mRNA-1:three_prime_utr;Parent=Msa0647890-mRNA-1 |
| Gene Sequence |
| Protein sequence |
