AlfalfaGEDB | Msa0683350

M. sativa cultivar zhongmu-4 / Msa0683350

KEGG: K00434
GO: -
PFAM: PF00141.26

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683350	AIY27528.1	100.000	250	0	0	1	250	1	250	0.0	508

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683350	sp\|P48534\|APX1_PEA	95.200	250	12	0	1	250	1	250	6.08e-177	489

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683350	A0A0H3UW77	100.000	250	0	0	1	250	1	250	0.0	508

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0090280	Msa0683350	0.830284	3.201877e-55	-8.615850e-47
Msa0106120	Msa0683350	0.808667	2.767716e-50	-8.615850e-47
Msa0242700	Msa0683350	0.816030	6.822539e-52	-8.615850e-47
Msa0436900	Msa0683350	-0.801121	1.045652e-48	-8.615850e-47
Msa0602530	Msa0683350	0.973594	1.077170e-136	-8.615850e-47
Msa0621890	Msa0683350	-0.808609	2.847156e-50	-8.615850e-47
Msa0647890	Msa0683350	0.811699	6.144091e-51	-8.615850e-47
Msa0669990	Msa0683350	-0.801378	9.262504e-49	-8.615850e-47
Msa0683350	Msa1166370	-0.801265	9.770931e-49	-8.615850e-47
Msa0683350	Msa1265660	-0.814286	1.664833e-51	-8.615850e-47

Showing 1 to 10 of 11 entries

Previous1 2Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683350	MtrunA17_Chr4g0030171	99.200	250	2	0	1	250	1	250	0.0	506
Msa0683350	MtrunA17_Chr5g0405731	64.167	240	85	1	8	247	6	244	7.06e-114	328
Msa0683350	MtrunA17_Chr4g0037131	63.223	242	88	1	7	248	6	246	5.94e-110	318
Msa0683350	MtrunA17_Chr3g0124821	46.094	256	112	6	16	246	101	355	5.19e-68	214
Msa0683350	MtrunA17_Chr3g0137751	39.407	236	120	7	20	246	93	314	2.91e-40	141
Msa0683350	MtrunA17_Chr4g0068621	30.233	215	106	8	73	248	112	321	4.68e-15	73.6
Msa0683350	MtrunA17_Chr6g0477071	28.986	207	112	7	73	249	127	328	1.17e-14	72.4
Msa0683350	MtrunA17_Chr8g0379871	82.353	34	6	0	66	99	3	36	6.17e-13	61.6

Showing 1 to 8 of 8 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0683350	AT1G07890.2	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.8	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.4	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.7	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.1	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.3	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.5	80.800	250	48	0	1	250	1	250	1.35e-155	432
Msa0683350	AT1G07890.6	80.567	247	48	0	1	247	1	247	8.20e-154	428
Msa0683350	AT3G09640.2	81.377	247	45	1	3	249	4	249	2.14e-149	417
Msa0683350	AT3G09640.1	81.377	247	45	1	3	249	4	249	2.14e-149	417

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Find 132 sgRNAs with CRISPR-Local

Find 221 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATAAAACTTACGCCAAA+CGG	0.488936	4_4:+45763657	None:intergenic
AAATCAGCATAGCTAATGAT+TGG	0.419318	4_4:+45763094	None:intergenic
AACAACACGTAGTTATAAGG+AGG	0.649629	4_4:+45764101	None:intergenic
AACACCACACACCGTTCCTT+AGG	0.567834	4_4:+45761204	None:intergenic
AACGGTGTGTGGTGTTTGAG+AGG	0.635361	4_4:-45761197	Msa0683350:three_prime_UTR
AACGTACCTCCCTACCGGGG+TGG	0.660383	4_4:+45762924	None:intergenic
AAGAAAATGTTGAAAGGTCT+TGG	0.292098	4_4:+45764307	None:intergenic
AAGATTAAGAAAATGTTGAA+AGG	0.588625	4_4:+45764301	None:intergenic
AAGCCTGAGCCACCACCAGA+GGG	0.625588	4_4:-45762297	Msa0683350:CDS
AAGCTCAGCTTGGTGCTTGA+TGG	0.336855	4_4:+45763183	None:intergenic

Showing 1 to 10 of 132 entries

Previous1 2 3 4 5…14Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAATGTTGAAAGGTCTT+GGG	+	chr4_4:45760916-45760935	None:intergenic	30.0%
AAGAAAATGTTGAAAGGTCT+TGG	+	chr4_4:45760917-45760936	None:intergenic	30.0%
TCGAAATCTAAGAAGGAAAA+TGG	+	chr4_4:45761222-45761241	None:intergenic	30.0%
TTTGATTCAAAGACAAAGAC+TGG	-	chr4_4:45762001-45762020	Msa0683350:intron	30.0%
AATCAGCATAGCTAATGATT+GGG	+	chr4_4:45762129-45762148	None:intergenic	30.0%
AAATCAGCATAGCTAATGAT+TGG	+	chr4_4:45762130-45762149	None:intergenic	30.0%
AAATACAACAAATCACTACC+TGG	+	chr4_4:45762156-45762175	None:intergenic	30.0%
TGGATTTCATACATTTCTGT+TGG	-	chr4_4:45762690-45762709	Msa0683350:intron	30.0%
AATTAACCACATGTGATAAC+TGG	-	chr4_4:45762793-45762812	Msa0683350:intron	30.0%
TTTAAATTATGGCTGCATTG+TGG	-	chr4_4:45763289-45763308	Msa0683350:intron	30.0%

Showing 1 to 10 of 221 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	45760907	45764336	45760907	ID=Msa0683350;Name=Msa0683350
chr4_4	mRNA	45760907	45764336	45760907	ID=Msa0683350-mRNA-1;Parent=Msa0683350;Name=Msa0683350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=348\|1\|1\|1\|0.88\|0.8\|10\|315\|250
chr4_4	exon	45760907	45761237	45760907	ID=Msa0683350-mRNA-1:exon:11200;Parent=Msa0683350-mRNA-1
chr4_4	exon	45761346	45761404	45761346	ID=Msa0683350-mRNA-1:exon:11199;Parent=Msa0683350-mRNA-1
chr4_4	exon	45761519	45761621	45761519	ID=Msa0683350-mRNA-1:exon:11198;Parent=Msa0683350-mRNA-1
chr4_4	exon	45761719	45761798	45761719	ID=Msa0683350-mRNA-1:exon:11197;Parent=Msa0683350-mRNA-1
chr4_4	exon	45762102	45762187	45762102	ID=Msa0683350-mRNA-1:exon:11196;Parent=Msa0683350-mRNA-1
chr4_4	exon	45762274	45762322	45762274	ID=Msa0683350-mRNA-1:exon:11195;Parent=Msa0683350-mRNA-1
chr4_4	exon	45762931	45762996	45762931	ID=Msa0683350-mRNA-1:exon:11194;Parent=Msa0683350-mRNA-1
chr4_4	exon	45763087	45763261	45763087	ID=Msa0683350-mRNA-1:exon:11193;Parent=Msa0683350-mRNA-1
chr4_4	exon	45763671	45763801	45763671	ID=Msa0683350-mRNA-1:exon:11192;Parent=Msa0683350-mRNA-1
chr4_4	exon	45764001	45764336	45764001	ID=Msa0683350-mRNA-1:exon:11191;Parent=Msa0683350-mRNA-1
chr4_4	five_prime_UTR	45764001	45764336	45764001	ID=Msa0683350-mRNA-1:five_prime_utr;Parent=Msa0683350-mRNA-1
chr4_4	five_prime_UTR	45763790	45763801	45763790	ID=Msa0683350-mRNA-1:five_prime_utr;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45763671	45763789	45763671	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45763087	45763261	45763087	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45762931	45762996	45762931	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45762274	45762322	45762274	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45762102	45762187	45762102	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45761719	45761798	45761719	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45761519	45761621	45761519	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45761346	45761404	45761346	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	CDS	45761222	45761237	45761222	ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1
chr4_4	three_prime_UTR	45760907	45761221	45760907	ID=Msa0683350-mRNA-1:three_prime_utr;Parent=Msa0683350-mRNA-1

Gene Sequence

>Msa0683350

ATGGGAAAATCTTACCCAACCGTGAGTGCTGATTACCAAAAGGCTGTTGAGAAGGCGAAGAGGAAGCTCAGAGGTTTCATCGCTGAGAAGAAATGCGCTCCTCTTATGCTCCGTTTGGCATGGCACTCTGCTGGAACTTTTGATTCAAAGACAAAGACTGGTGGTCCTTTCGGAACCATCAAGCACCAAGCTGAGCTTGCTCATGGTGCTAACAACGGTCTTGATATCGCTGTTAGGCTTTTGGAGCCTCTTAAGGAGCAATTCCCAATCATTAGCTATGCTGATTTCTACCAGTTGGCTGGTGTTGTTGCTGTTGAGATTACTGGTGGACCTGAAGTTCCTTTCCACCCCGGTAGGGAGGACAAGCCTGAGCCACCACCAGAGGGTCGCTTGCCTGATGCCACCAAGGGTTCTGACCATTTGAGGGATGTGTTTGGCAAAGCTATGGGGCTTAGTGACCAGGACATCGTTGCTCTGTCTGGTGGCCACACCATTGGAGCTGCACACAAGGAGCGTTCTGGATTTGAGGGCCCATGGACTTCTAATCCTCTCATTTTTGACAACTCATACTTCAAGGAGTTGTTGGGTGGTGAGAAGGAAGGCCTTCTTCAGTTGCCAAGTGATAAGGCACTTTTGAGCGACCCTGTATTCCGCCCACTTGTTGAGAAATATGCTGCCGATGAAGATGCTTTCTTTGCTGATTATGCCGAGGCTCATCAAAAGCTATCTGAGCTTGGGTTTGCAGAAGCCTAA

Protein sequence

>Msa0683350

MGKSYPTVSADYQKAVEKAKRKLRGFIAEKKCAPLMLRLAWHSAGTFDSKTKTGGPFGTIKHQAELAHGANNGLDIAVRLLEPLKEQFPIISYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEGRLPDATKGSDHLRDVFGKAMGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFKELLGGEKEGLLQLPSDKALLSDPVFRPLVEKYAADEDAFFADYAEAHQKLSELGFAEA*