Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683350 | AIY27528.1 | 100.000 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 0.0 | 508 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683350 | sp|P48534|APX1_PEA | 95.200 | 250 | 12 | 0 | 1 | 250 | 1 | 250 | 6.08e-177 | 489 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683350 | A0A0H3UW77 | 100.000 | 250 | 0 | 0 | 1 | 250 | 1 | 250 | 0.0 | 508 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0090280 | Msa0683350 | 0.830284 | 3.201877e-55 | -8.615850e-47 |
| Msa0106120 | Msa0683350 | 0.808667 | 2.767716e-50 | -8.615850e-47 |
| Msa0621890 | Msa0683350 | -0.808609 | 2.847156e-50 | -8.615850e-47 |
| Msa0647890 | Msa0683350 | 0.811699 | 6.144091e-51 | -8.615850e-47 |
| Msa0669990 | Msa0683350 | -0.801378 | 9.262504e-49 | -8.615850e-47 |
| Msa0683350 | Msa1166370 | -0.801265 | 9.770931e-49 | -8.615850e-47 |
| Msa0683350 | Msa1265660 | -0.814286 | 1.664833e-51 | -8.615850e-47 |
| Msa0683350 | Msa1303570 | -0.801840 | 7.445310e-49 | -8.615850e-47 |
| Msa0436900 | Msa0683350 | -0.801121 | 1.045652e-48 | -8.615850e-47 |
| Msa0242700 | Msa0683350 | 0.816030 | 6.822539e-52 | -8.615850e-47 |
| Msa0602530 | Msa0683350 | 0.973594 | 1.077170e-136 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683350 | MtrunA17_Chr4g0030171 | 99.200 | 250 | 2 | 0 | 1 | 250 | 1 | 250 | 0.0 | 506 |
| Msa0683350 | MtrunA17_Chr5g0405731 | 64.167 | 240 | 85 | 1 | 8 | 247 | 6 | 244 | 7.06e-114 | 328 |
| Msa0683350 | MtrunA17_Chr4g0037131 | 63.223 | 242 | 88 | 1 | 7 | 248 | 6 | 246 | 5.94e-110 | 318 |
| Msa0683350 | MtrunA17_Chr3g0124821 | 46.094 | 256 | 112 | 6 | 16 | 246 | 101 | 355 | 5.19e-68 | 214 |
| Msa0683350 | MtrunA17_Chr3g0137751 | 39.407 | 236 | 120 | 7 | 20 | 246 | 93 | 314 | 2.91e-40 | 141 |
| Msa0683350 | MtrunA17_Chr4g0068621 | 30.233 | 215 | 106 | 8 | 73 | 248 | 112 | 321 | 4.68e-15 | 73.6 |
| Msa0683350 | MtrunA17_Chr6g0477071 | 28.986 | 207 | 112 | 7 | 73 | 249 | 127 | 328 | 1.17e-14 | 72.4 |
| Msa0683350 | MtrunA17_Chr8g0379871 | 82.353 | 34 | 6 | 0 | 66 | 99 | 3 | 36 | 6.17e-13 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0683350 | AT1G07890.2 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.8 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.4 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.7 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.1 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.3 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.5 | 80.800 | 250 | 48 | 0 | 1 | 250 | 1 | 250 | 1.35e-155 | 432 |
| Msa0683350 | AT1G07890.6 | 80.567 | 247 | 48 | 0 | 1 | 247 | 1 | 247 | 8.20e-154 | 428 |
| Msa0683350 | AT3G09640.2 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.14e-149 | 417 |
| Msa0683350 | AT3G09640.1 | 81.377 | 247 | 45 | 1 | 3 | 249 | 4 | 249 | 2.14e-149 | 417 |
| Msa0683350 | AT4G35000.1 | 66.942 | 242 | 79 | 1 | 6 | 247 | 4 | 244 | 1.39e-116 | 335 |
| Msa0683350 | AT4G35970.1 | 60.166 | 241 | 94 | 2 | 7 | 247 | 4 | 242 | 2.07e-100 | 294 |
| Msa0683350 | AT4G35970.2 | 59.361 | 219 | 87 | 2 | 7 | 225 | 4 | 220 | 1.81e-89 | 264 |
| Msa0683350 | AT1G77490.1 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.01e-67 | 215 |
| Msa0683350 | AT1G77490.2 | 45.865 | 266 | 118 | 5 | 6 | 246 | 76 | 340 | 1.08e-67 | 215 |
| Msa0683350 | AT4G08390.2 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.46e-66 | 209 |
| Msa0683350 | AT4G08390.5 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.46e-66 | 209 |
| Msa0683350 | AT4G08390.1 | 46.484 | 256 | 111 | 6 | 16 | 246 | 107 | 361 | 8.46e-66 | 209 |
| Msa0683350 | AT4G08390.3 | 46.484 | 256 | 111 | 6 | 16 | 246 | 106 | 360 | 1.08e-65 | 208 |
| Msa0683350 | AT4G08390.4 | 42.969 | 256 | 94 | 8 | 16 | 246 | 107 | 335 | 1.26e-53 | 177 |
| Msa0683350 | AT4G32320.1 | 36.653 | 251 | 125 | 7 | 5 | 246 | 98 | 323 | 1.40e-38 | 137 |
| Msa0683350 | AT4G31760.1 | 32.663 | 199 | 84 | 7 | 91 | 246 | 118 | 309 | 2.43e-17 | 80.1 |
| Msa0683350 | AT3G28200.1 | 26.786 | 280 | 156 | 10 | 12 | 247 | 26 | 300 | 1.81e-14 | 72.0 |
| Msa0683350 | AT4G33420.1 | 32.474 | 194 | 96 | 8 | 82 | 245 | 119 | 307 | 1.23e-13 | 69.7 |
| Msa0683350 | AT4G09010.2 | 27.519 | 258 | 110 | 8 | 28 | 246 | 43 | 262 | 1.29e-13 | 69.3 |
| Msa0683350 | AT4G33420.2 | 32.474 | 194 | 96 | 8 | 82 | 245 | 166 | 354 | 1.45e-13 | 69.7 |
| Msa0683350 | AT4G09010.1 | 27.519 | 258 | 110 | 8 | 28 | 246 | 108 | 327 | 2.31e-13 | 69.3 |
| Msa0683350 | AT4G09010.3 | 27.519 | 258 | 110 | 8 | 28 | 246 | 155 | 374 | 4.88e-13 | 68.6 |
Find 132 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACAGACCTTGCTCTTATTT+TGG | 0.091166 | 4_4:-45761146 | Msa0683350:three_prime_UTR |
| GTGATAATTCCCAGCTATTT+TGG | 0.206378 | 4_4:-45761018 | Msa0683350:three_prime_UTR |
| GTGAAATTTATGTAAGATTC+AGG | 0.216025 | 4_4:+45761166 | None:intergenic |
| TTAGATGGTTAAGATGAATT+TGG | 0.227197 | 4_4:+45764194 | None:intergenic |
| GTTGTTGCTGTTGAGATTAC+TGG | 0.232804 | 4_4:-45762965 | Msa0683350:CDS |
| TGATATCGCTGTTAGGCTTT+TGG | 0.241502 | 4_4:-45763137 | Msa0683350:CDS |
| GCTCTCCTCGTGTCACTGTT+AGG | 0.263578 | 4_4:-45764040 | Msa0683350:five_prime_UTR |
| AGAACTTGAAAGACAACTTT+TGG | 0.278359 | 4_4:+45760960 | None:intergenic |
| AAGAAAATGTTGAAAGGTCT+TGG | 0.292098 | 4_4:+45764307 | None:intergenic |
| TCGCCTTCTCAACAGCCTTT+TGG | 0.306455 | 4_4:+45763732 | None:intergenic |
| TCGAAATCTAAGAAGGAAAA+TGG | 0.317014 | 4_4:+45764002 | None:intergenic |
| AAGCTCAGCTTGGTGCTTGA+TGG | 0.336855 | 4_4:+45763183 | None:intergenic |
| GATTGATTTGGAAAGTTAGA+TGG | 0.349133 | 4_4:+45764179 | None:intergenic |
| TCAACAAGTGGGCGGAATAC+AGG | 0.362317 | 4_4:+45761532 | None:intergenic |
| CGCTCCTCTTATGCTCCGTT+TGG | 0.364102 | 4_4:-45763672 | Msa0683350:CDS |
| TCGTGGGGTTATGATTGATT+TGG | 0.372269 | 4_4:+45764167 | None:intergenic |
| CGTCTAGCGTTTAATTGTCT+TGG | 0.376349 | 4_4:-45760937 | Msa0683350:three_prime_UTR |
| ACAAAGACTGGTGGTCCTTT+CGG | 0.381599 | 4_4:-45763208 | Msa0683350:CDS |
| CGACCCTCTGGTGGTGGCTC+AGG | 0.382379 | 4_4:+45762294 | None:intergenic |
| ACGAACAACACGTAGTTATA+AGG | 0.383526 | 4_4:+45764098 | None:intergenic |
| GCTGCACACAAGGAGCGTTC+TGG | 0.387014 | 4_4:-45761773 | Msa0683350:CDS |
| TATAATCAAACCAAAATAGC+TGG | 0.405744 | 4_4:+45761008 | None:intergenic |
| CAGGACATCGTTGCTCTGTC+TGG | 0.408589 | 4_4:-45762115 | Msa0683350:CDS |
| TCTTCAGTTGCCAAGTGATA+AGG | 0.411660 | 4_4:-45761569 | Msa0683350:CDS |
| AAATCAGCATAGCTAATGAT+TGG | 0.419318 | 4_4:+45763094 | None:intergenic |
| ACGGTCTTGATATCGCTGTT+AGG | 0.422947 | 4_4:-45763144 | Msa0683350:CDS |
| ACACGCTCTTTCTTCACTCT+TGG | 0.424674 | 4_4:-45764068 | Msa0683350:five_prime_UTR |
| AGAAAATGTTGAAAGGTCTT+GGG | 0.424795 | 4_4:+45764308 | None:intergenic |
| TGCAGGTTCTGACCATTTGA+GGG | 0.426677 | 4_4:-45762170 | Msa0683350:intron |
| TTGTGTAGATGGCACTCTGC+TGG | 0.426968 | 4_4:-45763247 | Msa0683350:intron |
| TGAAATGATTAGGGAGTTGT+TGG | 0.432563 | 4_4:-45761611 | Msa0683350:intron |
| CACTAACCCTTGGTGGCATC+AGG | 0.433823 | 4_4:+45762267 | None:intergenic |
| CCGGGGTGGAAAGGAACTTC+AGG | 0.436434 | 4_4:+45762938 | None:intergenic |
| CTCTCCTCGTGTCACTGTTA+GGG | 0.437435 | 4_4:-45764039 | Msa0683350:five_prime_UTR |
| GGATGTGTTTGGCAAAGCTA+TGG | 0.443040 | 4_4:-45762149 | Msa0683350:CDS |
| ATTGGGAATTGCTCCTTAAG+AGG | 0.447187 | 4_4:+45763112 | None:intergenic |
| TTTGATTCAAAGACAAAGAC+TGG | 0.447588 | 4_4:-45763220 | Msa0683350:CDS |
| CAAGGAGCGTTCTGGATTTG+AGG | 0.450558 | 4_4:-45761765 | Msa0683350:CDS |
| AATACACGGTGTGATTTGAT+TGG | 0.452509 | 4_4:+45764224 | None:intergenic |
| TTTGATTGGGTGGGTGAAGT+AGG | 0.455952 | 4_4:+45764238 | None:intergenic |
| GGAGTTGTTGGGTGGTGAGA+AGG | 0.456331 | 4_4:-45761599 | Msa0683350:CDS |
| TTGCAGGTTCTGACCATTTG+AGG | 0.456831 | 4_4:-45762171 | Msa0683350:intron |
| GGCAAGCGACCCTCTGGTGG+TGG | 0.457136 | 4_4:+45762288 | None:intergenic |
| GGTAATCAGCACTCACGGTT+GGG | 0.463922 | 4_4:+45763753 | None:intergenic |
| GCATCAGGCAAGCGACCCTC+TGG | 0.466554 | 4_4:+45762282 | None:intergenic |
| GACCATTTGAGGGATGTGTT+TGG | 0.471367 | 4_4:-45762160 | Msa0683350:CDS |
| ATCAAAAGCTATCTGAGCTT+GGG | 0.472564 | 4_4:-45761345 | Msa0683350:intron |
| CATCAAAAGCTATCTGAGCT+TGG | 0.474904 | 4_4:-45761346 | Msa0683350:CDS |
| GGGGATTGTGAGGCGTTGGA+TGG | 0.476879 | 4_4:+45764138 | None:intergenic |
| CTCAAAAGTGCCTTATCACT+TGG | 0.477819 | 4_4:+45761559 | None:intergenic |
| TACGCCAAACGGAGCATAAG+AGG | 0.478986 | 4_4:+45763668 | None:intergenic |
| TTTGTGGTTATGCAGTTGGC+TGG | 0.479033 | 4_4:-45762989 | Msa0683350:intron |
| CATGCGTAAAGAGCAACATT+GGG | 0.484715 | 4_4:+45760984 | None:intergenic |
| AAAATAAAACTTACGCCAAA+CGG | 0.488936 | 4_4:+45763657 | None:intergenic |
| TATCACTTGGCAACTGAAGA+AGG | 0.489890 | 4_4:+45761572 | None:intergenic |
| TGAAATTTATGTAAGATTCA+GGG | 0.497618 | 4_4:+45761167 | None:intergenic |
| CACCATGAGCAAGCTCAGCT+TGG | 0.497717 | 4_4:+45763173 | None:intergenic |
| GATGTGTTTGGCAAAGCTAT+GGG | 0.498498 | 4_4:-45762148 | Msa0683350:CDS |
| AATCAGCATAGCTAATGATT+GGG | 0.504612 | 4_4:+45763095 | None:intergenic |
| TGCCAAACACATCCCTCAAA+TGG | 0.508400 | 4_4:+45762158 | None:intergenic |
| AAGGAGCGTTCTGGATTTGA+GGG | 0.511703 | 4_4:-45761764 | Msa0683350:CDS |
| TAAGGAGGAGAAAGTTCTAG+AGG | 0.513052 | 4_4:+45764116 | None:intergenic |
| AAGGAGGAGAAAGTTCTAGA+GGG | 0.513114 | 4_4:+45764117 | None:intergenic |
| CACCAAGCTGAGCTTGCTCA+TGG | 0.514212 | 4_4:-45763175 | Msa0683350:CDS |
| AGCTATGGGGCTTAGTGACC+AGG | 0.514461 | 4_4:-45762134 | Msa0683350:CDS |
| TAGTAAACGTACCTCCCTAC+CGG | 0.522438 | 4_4:+45762919 | None:intergenic |
| AAGTTCCTTTCCACCCCGGT+AGG | 0.526103 | 4_4:-45762934 | Msa0683350:CDS |
| ATGAGAGGATTAGAAGTCCA+TGG | 0.528007 | 4_4:+45761740 | None:intergenic |
| CAACAAGTGGGCGGAATACA+GGG | 0.530888 | 4_4:+45761533 | None:intergenic |
| ACCTCCCTACCGGGGTGGAA+AGG | 0.535670 | 4_4:+45762929 | None:intergenic |
| AGGAGGAGAAAGTTCTAGAG+GGG | 0.536566 | 4_4:+45764118 | None:intergenic |
| GGAGGAGAAAGTTCTAGAGG+GGG | 0.536985 | 4_4:+45764119 | None:intergenic |
| AGTAAACGTACCTCCCTACC+GGG | 0.538079 | 4_4:+45762920 | None:intergenic |
| ACATGCGTAAAGAGCAACAT+TGG | 0.541229 | 4_4:+45760983 | None:intergenic |
| CGTGAGTGCTGATTACCAAA+AGG | 0.551875 | 4_4:-45763747 | Msa0683350:CDS |
| CAGACAGAGCAACGATGTCC+TGG | 0.552668 | 4_4:+45762116 | None:intergenic |
| TCCAGAACACTAACCCTTGG+TGG | 0.552948 | 4_4:+45762260 | None:intergenic |
| TCGCTTGCCTGATGCCACCA+AGG | 0.554221 | 4_4:-45762274 | Msa0683350:CDS |
| ACTCACCTCGAAATCTAAGA+AGG | 0.556896 | 4_4:+45763995 | None:intergenic |
| TGGTAATCAGCACTCACGGT+TGG | 0.557293 | 4_4:+45763752 | None:intergenic |
| CGCTTGCCTGATGCCACCAA+GGG | 0.557551 | 4_4:-45762273 | Msa0683350:intron |
| CGTTGGATGGATAAGATCGT+GGG | 0.563175 | 4_4:+45764151 | None:intergenic |
| AGTTCCTTTCCACCCCGGTA+GGG | 0.567360 | 4_4:-45762933 | Msa0683350:CDS |
| AACACCACACACCGTTCCTT+AGG | 0.567834 | 4_4:+45761204 | None:intergenic |
| TCAGGCAAGCGACCCTCTGG+TGG | 0.568572 | 4_4:+45762285 | None:intergenic |
| ATAATCAAACCAAAATAGCT+GGG | 0.569101 | 4_4:+45761009 | None:intergenic |
| CACAGGTTTGCAGAAGCCTA+AGG | 0.569562 | 4_4:-45761220 | Msa0683350:intron |
| CACGGTGTGATTTGATTGGG+TGG | 0.574514 | 4_4:+45764228 | None:intergenic |
| ATACACGGTGTGATTTGATT+GGG | 0.574940 | 4_4:+45764225 | None:intergenic |
| GACATCGTTGCTCTGTCTGG+TGG | 0.579861 | 4_4:-45762112 | Msa0683350:CDS |
| GCAGCATATTTCTCAACAAG+TGG | 0.582870 | 4_4:+45761520 | None:intergenic |
| TTACCAAAAGGCTGTTGAGA+AGG | 0.586567 | 4_4:-45763735 | Msa0683350:CDS |
| TCCTTTCCACCCCGGTAGGG+AGG | 0.587045 | 4_4:-45762930 | Msa0683350:intron |
| AAGATTAAGAAAATGTTGAA+AGG | 0.588625 | 4_4:+45764301 | None:intergenic |
| TTGGTAGGGAGCTGCACACA+AGG | 0.589477 | 4_4:-45761783 | Msa0683350:intron |
| GTTGCTGTTGAGATTACTGG+TGG | 0.592645 | 4_4:-45762962 | Msa0683350:CDS |
| TAGCTATGCTGATTTCTACC+AGG | 0.595859 | 4_4:-45763086 | Msa0683350:intron |
| CAAGCCTGAGCCACCACCAG+AGG | 0.599599 | 4_4:-45762298 | Msa0683350:CDS |
| TTCGTCAATGATGACGAATG+AGG | 0.599893 | 4_4:+45764262 | None:intergenic |
| GTTCTGGATTTGAGGGCCCA+TGG | 0.602005 | 4_4:-45761757 | Msa0683350:CDS |
| GCGTTGGATGGATAAGATCG+TGG | 0.612646 | 4_4:+45764150 | None:intergenic |
| GAAATGATTAGGGAGTTGTT+GGG | 0.614317 | 4_4:-45761610 | Msa0683350:intron |
| TGAGAGGATTAGAAGTCCAT+GGG | 0.619251 | 4_4:+45761741 | None:intergenic |
| AAGCCTGAGCCACCACCAGA+GGG | 0.625588 | 4_4:-45762297 | Msa0683350:CDS |
| TGTGTGGTGTTTGAGAGGCA+TGG | 0.630213 | 4_4:-45761192 | Msa0683350:three_prime_UTR |
| TTAACAATGTTATTTAACAG+AGG | 0.633091 | 4_4:+45761041 | None:intergenic |
| AACGGTGTGTGGTGTTTGAG+AGG | 0.635361 | 4_4:-45761197 | Msa0683350:three_prime_UTR |
| CCTGAAGTTCCTTTCCACCC+CGG | 0.635685 | 4_4:-45762938 | Msa0683350:CDS |
| GATTCAAAGACAAAGACTGG+TGG | 0.639755 | 4_4:-45763217 | Msa0683350:CDS |
| TTTCTTTGCTGATTATGCCG+AGG | 0.640041 | 4_4:-45761371 | Msa0683350:CDS |
| ATGAACCCAAAATAAGAGCA+AGG | 0.640566 | 4_4:+45761140 | None:intergenic |
| CAGCATATTTCTCAACAAGT+GGG | 0.640937 | 4_4:+45761521 | None:intergenic |
| AGGCTGTTGAGAAGGCGAAG+AGG | 0.646869 | 4_4:-45763727 | Msa0683350:CDS |
| AACAACACGTAGTTATAAGG+AGG | 0.649629 | 4_4:+45764101 | None:intergenic |
| ATGTGTTTGGCAAAGCTATG+GGG | 0.650358 | 4_4:-45762147 | Msa0683350:CDS |
| AATTTGGACGTGTGAATACA+CGG | 0.651495 | 4_4:+45764210 | None:intergenic |
| AGTCAATACATACAATGGTG+TGG | 0.652135 | 4_4:+45762089 | None:intergenic |
| AAGGCGAAGAGGAAGCTCAG+AGG | 0.652638 | 4_4:-45763716 | Msa0683350:CDS |
| CTTGCTCATGGTGCTAACAA+CGG | 0.654051 | 4_4:-45763163 | Msa0683350:CDS |
| TGGTGCTTGATGGTTCCGAA+AGG | 0.654886 | 4_4:+45763193 | None:intergenic |
| TTGTTGGGTGGTGAGAAGGA+AGG | 0.658316 | 4_4:-45761595 | Msa0683350:CDS |
| AACGTACCTCCCTACCGGGG+TGG | 0.660383 | 4_4:+45762924 | None:intergenic |
| ATGATTAGGGAGTTGTTGGG+TGG | 0.662546 | 4_4:-45761607 | Msa0683350:intron |
| ACGGTGTGATTTGATTGGGT+GGG | 0.674529 | 4_4:+45764229 | None:intergenic |
| GAAGCCTAAGGAACGGTGTG+TGG | 0.679711 | 4_4:-45761208 | Msa0683350:exon |
| CATATTTCTCAACAAGTGGG+CGG | 0.689114 | 4_4:+45761524 | None:intergenic |
| ATGCGTAAAGAGCAACATTG+GGG | 0.690791 | 4_4:+45760985 | None:intergenic |
| GTTTGCAGAAGCCTAAGGAA+CGG | 0.693212 | 4_4:-45761215 | Msa0683350:exon |
| TTTGCTAGACATGATGAACG+TGG | 0.694653 | 4_4:-45761091 | Msa0683350:three_prime_UTR |
| GTTGGATGGATAAGATCGTG+GGG | 0.723472 | 4_4:+45764152 | None:intergenic |
| GTAAACGTACCTCCCTACCG+GGG | 0.769408 | 4_4:+45762921 | None:intergenic |
| TGAACCCTAACAGTGACACG+AGG | 0.770546 | 4_4:+45764035 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CCAAATATAAAAAATAAATA+GGG | + | chr4_4:45762864-45762883 | None:intergenic | 10.0% |
| !! | TCCAAATATAAAAAATAAAT+AGG | + | chr4_4:45762865-45762884 | None:intergenic | 10.0% |
| !!! | TATTTATTTTTTATATTTGG+AGG | - | chr4_4:45762864-45762883 | Msa0683350:intron | 10.0% |
| !!! | ATTATCTAAGTTTTAAATTA+TGG | - | chr4_4:45763278-45763297 | Msa0683350:intron | 10.0% |
| !! | TTAAAACACAAAAAAAAATA+GGG | + | chr4_4:45763563-45763582 | None:intergenic | 10.0% |
| !!! | TTTAAAACACAAAAAAAAAT+AGG | + | chr4_4:45763564-45763583 | None:intergenic | 10.0% |
| !! | AATATATATATTTATCTTCA+AGG | - | chr4_4:45763905-45763924 | Msa0683350:intron | 10.0% |
| !!! | ATCTGTTTGAATATTTTTTT+GGG | - | chr4_4:45761775-45761794 | Msa0683350:CDS | 15.0% |
| !!! | CCCTATTTATTTTTTATATT+TGG | - | chr4_4:45762861-45762880 | Msa0683350:intron | 15.0% |
| !!! | ATTATCAAAGTTTTAAACTA+TGG | - | chr4_4:45763214-45763233 | Msa0683350:CDS | 15.0% |
| !! | AGGAATATTAAATATACATA+CGG | + | chr4_4:45763726-45763745 | None:intergenic | 15.0% |
| !! | AAGATTAAGAAAATGTTGAA+AGG | + | chr4_4:45760923-45760942 | None:intergenic | 20.0% |
| !! | AGAAAAATAAGCTCAAAAAA+TGG | + | chr4_4:45761351-45761370 | None:intergenic | 20.0% |
| !!! | ATTTTCTGCTTATTTTTTGT+AGG | - | chr4_4:45761582-45761601 | Msa0683350:CDS | 20.0% |
| !!! | ATGATTTGTTTGAGATTTTT+TGG | - | chr4_4:45761747-45761766 | Msa0683350:CDS | 20.0% |
| !!! | GATCTGTTTGAATATTTTTT+TGG | - | chr4_4:45761774-45761793 | Msa0683350:CDS | 20.0% |
| !!! | AATATTTTTTTGGGATGAAT+CGG | - | chr4_4:45761784-45761803 | Msa0683350:intron | 20.0% |
| !! | ATTTCAGTCATTTATTTATG+TGG | - | chr4_4:45762203-45762222 | Msa0683350:intron | 20.0% |
| !!! | ATGATGTTTCTTTAACTTTT+TGG | - | chr4_4:45762382-45762401 | Msa0683350:intron | 20.0% |
| !!! | ATGATTTGACAATCAATTTT+TGG | - | chr4_4:45762435-45762454 | Msa0683350:intron | 20.0% |
| !! | CTTTACAAAAAAAAAACTCA+AGG | + | chr4_4:45762501-45762520 | None:intergenic | 20.0% |
| !! | GATAATTAAACCAAAACAAA+AGG | + | chr4_4:45762899-45762918 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGGTTTAATTATC+AGG | - | chr4_4:45762899-45762918 | Msa0683350:intron | 20.0% |
| !!! | TTTAAAGTCAATACATACAA+TGG | + | chr4_4:45763140-45763159 | None:intergenic | 20.0% |
| !! | TTGGTTATACTTAATGTAAT+TGG | - | chr4_4:45763419-45763438 | Msa0683350:intron | 20.0% |
| !! | TTATACTTAATGTAATTGGT+AGG | - | chr4_4:45763423-45763442 | Msa0683350:intron | 20.0% |
| !! | TATACTTAATGTAATTGGTA+GGG | - | chr4_4:45763424-45763443 | Msa0683350:intron | 20.0% |
| !!! | AATCCTTTTCATCATATTTT+TGG | - | chr4_4:45763751-45763770 | Msa0683350:CDS | 20.0% |
| !! | TGAAATTTATGTAAGATTCA+GGG | + | chr4_4:45764057-45764076 | None:intergenic | 20.0% |
| !!! | TTAACAATGTTATTTAACAG+AGG | + | chr4_4:45764183-45764202 | None:intergenic | 20.0% |
| ! | TTAGATGGTTAAGATGAATT+TGG | + | chr4_4:45761030-45761049 | None:intergenic | 25.0% |
| !!! | AATCAGAAGAAATTTTTGAG+CGG | + | chr4_4:45761268-45761287 | None:intergenic | 25.0% |
| !! | TTGCAGAAATTTTAAGCTAT+GGG | - | chr4_4:45761436-45761455 | Msa0683350:intron | 25.0% |
| ! | AAAATAAAACTTACGCCAAA+CGG | + | chr4_4:45761567-45761586 | None:intergenic | 25.0% |
| !!! | ATATTTTTTTGGGATGAATC+GGG | - | chr4_4:45761785-45761804 | Msa0683350:intron | 25.0% |
| !!! | TTATGATTTGTTTGTGTAGA+TGG | - | chr4_4:45761963-45761982 | Msa0683350:intron | 25.0% |
| !!! | ATTTATGTGGTTTGTTTTTG+TGG | - | chr4_4:45762216-45762235 | Msa0683350:intron | 25.0% |
| ! | TTTCTCATTGTTGATGTAAA+TGG | - | chr4_4:45762332-45762351 | Msa0683350:intron | 25.0% |
| !! | TTTGGTTATAACTTTTCATG+TGG | - | chr4_4:45762453-45762472 | Msa0683350:intron | 25.0% |
| ! | TTCATGTGGTATATAATGAT+AGG | - | chr4_4:45762467-45762486 | Msa0683350:intron | 25.0% |
| ! | AAACGCATTTGCAATTATTA+CGG | - | chr4_4:45762581-45762600 | Msa0683350:intron | 25.0% |
| ! | AATCCAAAAACTCATTGATA+AGG | + | chr4_4:45762676-45762695 | None:intergenic | 25.0% |
| ! | AAACAACTACAATCAATTGT+AGG | + | chr4_4:45763006-45763025 | None:intergenic | 25.0% |
| ! | TACAATTGATTGTAGTTGTT+TGG | - | chr4_4:45763005-45763024 | Msa0683350:intron | 25.0% |
| !! | ATTTGATTCTTGATTTTTGC+AGG | - | chr4_4:45763034-45763053 | Msa0683350:intron | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | - | chr4_4:45763187-45763206 | Msa0683350:CDS | 25.0% |
| !!! | TGCATTTGATATTTTGATAC+TGG | - | chr4_4:45763187-45763206 | Msa0683350:CDS | 25.0% |
| ! | TTGATGTTGTTGAAATGATT+AGG | - | chr4_4:45763600-45763619 | Msa0683350:intron | 25.0% |
| ! | TGATGTTGTTGAAATGATTA+GGG | - | chr4_4:45763601-45763620 | Msa0683350:intron | 25.0% |
| ! | ATGATGAAAAGGATTATCAT+AGG | + | chr4_4:45763746-45763765 | None:intergenic | 25.0% |
| ! | ATGCCAAAAATATGATGAAA+AGG | + | chr4_4:45763757-45763776 | None:intergenic | 25.0% |
| ! | GTGAAATTTATGTAAGATTC+AGG | + | chr4_4:45764058-45764077 | None:intergenic | 25.0% |
| ! | ATAATCAAACCAAAATAGCT+GGG | + | chr4_4:45764215-45764234 | None:intergenic | 25.0% |
| ! | TATAATCAAACCAAAATAGC+TGG | + | chr4_4:45764216-45764235 | None:intergenic | 25.0% |
| AGAAAATGTTGAAAGGTCTT+GGG | + | chr4_4:45760916-45760935 | None:intergenic | 30.0% | |
| AAGAAAATGTTGAAAGGTCT+TGG | + | chr4_4:45760917-45760936 | None:intergenic | 30.0% | |
| !! | GATTGATTTGGAAAGTTAGA+TGG | + | chr4_4:45761045-45761064 | None:intergenic | 30.0% |
| TCGAAATCTAAGAAGGAAAA+TGG | + | chr4_4:45761222-45761241 | None:intergenic | 30.0% | |
| ! | ATTTTCCTTCTTAGATTTCG+AGG | - | chr4_4:45761221-45761240 | Msa0683350:intron | 30.0% |
| ! | AACTTCGATTCTGAGAAAAT+AGG | + | chr4_4:45761293-45761312 | None:intergenic | 30.0% |
| ! | GTTGCAGAAATTTTAAGCTA+TGG | - | chr4_4:45761435-45761454 | Msa0683350:intron | 30.0% |
| !!! | ATCGGGTGCAATTTTTTTTT+TGG | - | chr4_4:45761802-45761821 | Msa0683350:intron | 30.0% |
| TTTGATTCAAAGACAAAGAC+TGG | - | chr4_4:45762001-45762020 | Msa0683350:intron | 30.0% | |
| AATCAGCATAGCTAATGATT+GGG | + | chr4_4:45762129-45762148 | None:intergenic | 30.0% | |
| AAATCAGCATAGCTAATGAT+TGG | + | chr4_4:45762130-45762149 | None:intergenic | 30.0% | |
| AAATACAACAAATCACTACC+TGG | + | chr4_4:45762156-45762175 | None:intergenic | 30.0% | |
| ! | AGTCCTTATCAATGAGTTTT+TGG | - | chr4_4:45762670-45762689 | Msa0683350:intron | 30.0% |
| TGGATTTCATACATTTCTGT+TGG | - | chr4_4:45762690-45762709 | Msa0683350:intron | 30.0% | |
| AATTAACCACATGTGATAAC+TGG | - | chr4_4:45762793-45762812 | Msa0683350:intron | 30.0% | |
| !! | GCTAATTAGTCCTTTTGTTT+TGG | - | chr4_4:45762886-45762905 | Msa0683350:intron | 30.0% |
| TTTAAATTATGGCTGCATTG+TGG | - | chr4_4:45763289-45763308 | Msa0683350:intron | 30.0% | |
| TATGAGTTGTCAAAAATGAG+AGG | + | chr4_4:45763499-45763518 | None:intergenic | 30.0% | |
| CACAAAAAAAAATAGGGCAT+GGG | + | chr4_4:45763557-45763576 | None:intergenic | 30.0% | |
| ACACAAAAAAAAATAGGGCA+TGG | + | chr4_4:45763558-45763577 | None:intergenic | 30.0% | |
| CATTGACAAATGAGAATTCT+CGG | + | chr4_4:45763812-45763831 | None:intergenic | 30.0% | |
| ! | AGAACTTGAAAGACAACTTT+TGG | + | chr4_4:45764264-45764283 | None:intergenic | 30.0% |
| ATACACGGTGTGATTTGATT+GGG | + | chr4_4:45760999-45761018 | None:intergenic | 35.0% | |
| AATACACGGTGTGATTTGAT+TGG | + | chr4_4:45761000-45761019 | None:intergenic | 35.0% | |
| AATTTGGACGTGTGAATACA+CGG | + | chr4_4:45761014-45761033 | None:intergenic | 35.0% | |
| AACAACACGTAGTTATAAGG+AGG | + | chr4_4:45761123-45761142 | None:intergenic | 35.0% | |
| ACGAACAACACGTAGTTATA+AGG | + | chr4_4:45761126-45761145 | None:intergenic | 35.0% | |
| !! | TGTTTTTGTGGTTATGCAGT+TGG | - | chr4_4:45762228-45762247 | Msa0683350:intron | 35.0% |
| ATTGCAAATGCGTTTCAAAC+AGG | + | chr4_4:45762576-45762595 | None:intergenic | 35.0% | |
| CTACAGACAACTTTCAAAAC+AGG | + | chr4_4:45762652-45762671 | None:intergenic | 35.0% | |
| TTGCAATGCTATCTACAAGT+TGG | + | chr4_4:45762719-45762738 | None:intergenic | 35.0% | |
| !! | GCATTTCTAGTTATCACATG+AGG | + | chr4_4:45762754-45762773 | None:intergenic | 35.0% |
| AGTCAATACATACAATGGTG+TGG | + | chr4_4:45763135-45763154 | None:intergenic | 35.0% | |
| TTTAAACTATGGCTGCATTG+TGG | - | chr4_4:45763225-45763244 | Msa0683350:CDS | 35.0% | |
| TGAAATGATTAGGGAGTTGT+TGG | - | chr4_4:45763610-45763629 | Msa0683350:intron | 35.0% | |
| GAAATGATTAGGGAGTTGTT+GGG | - | chr4_4:45763611-45763630 | Msa0683350:intron | 35.0% | |
| CAGCATATTTCTCAACAAGT+GGG | + | chr4_4:45763703-45763722 | None:intergenic | 35.0% | |
| TCTCATTTGTCAATGATTGC+AGG | - | chr4_4:45763817-45763836 | Msa0683350:intron | 35.0% | |
| ATCAAAAGCTATCTGAGCTT+GGG | - | chr4_4:45763876-45763895 | Msa0683350:intron | 35.0% | |
| !!! | TGTTGTGTTTTTTACCACAC+AGG | - | chr4_4:45763984-45764003 | Msa0683350:intron | 35.0% |
| !!! | ACAGACCTTGCTCTTATTTT+GGG | - | chr4_4:45764076-45764095 | Msa0683350:five_prime_UTR | 35.0% |
| ATGAACCCAAAATAAGAGCA+AGG | + | chr4_4:45764084-45764103 | None:intergenic | 35.0% | |
| !!! | TATTTTGGGTTCATCGAAGT+TGG | - | chr4_4:45764090-45764109 | Msa0683350:five_prime_UTR | 35.0% |
| !!! | ATTTTGGGTTCATCGAAGTT+GGG | - | chr4_4:45764091-45764110 | Msa0683350:five_prime_UTR | 35.0% |
| ! | GTGATAATTCCCAGCTATTT+TGG | - | chr4_4:45764203-45764222 | Msa0683350:five_prime_UTR | 35.0% |
| ! | TTCGTCAATGATGACGAATG+AGG | + | chr4_4:45760962-45760981 | None:intergenic | 40.0% |
| TCGTGGGGTTATGATTGATT+TGG | + | chr4_4:45761057-45761076 | None:intergenic | 40.0% | |
| !! | AAGGAGGAGAAAGTTCTAGA+GGG | + | chr4_4:45761107-45761126 | None:intergenic | 40.0% |
| ! | TAAGGAGGAGAAAGTTCTAG+AGG | + | chr4_4:45761108-45761127 | None:intergenic | 40.0% |
| ACTCACCTCGAAATCTAAGA+AGG | + | chr4_4:45761229-45761248 | None:intergenic | 40.0% | |
| !! | CTTTTGGTAATCAGCACTCA+CGG | + | chr4_4:45761476-45761495 | None:intergenic | 40.0% |
| TTACCAAAAGGCTGTTGAGA+AGG | - | chr4_4:45761486-45761505 | Msa0683350:intron | 40.0% | |
| GATTCAAAGACAAAGACTGG+TGG | - | chr4_4:45762004-45762023 | Msa0683350:intron | 40.0% | |
| ! | TGATATCGCTGTTAGGCTTT+TGG | - | chr4_4:45762084-45762103 | Msa0683350:intron | 40.0% |
| ATTGGGAATTGCTCCTTAAG+AGG | + | chr4_4:45762112-45762131 | None:intergenic | 40.0% | |
| !! | TAGCTATGCTGATTTCTACC+AGG | - | chr4_4:45762135-45762154 | Msa0683350:CDS | 40.0% |
| ! | GTTGTTGCTGTTGAGATTAC+TGG | - | chr4_4:45762256-45762275 | Msa0683350:intron | 40.0% |
| !! | GGAGGTACGTTTACTACTTT+TGG | - | chr4_4:45762309-45762328 | Msa0683350:intron | 40.0% |
| TCTAGTTATCACATGAGGAC+AGG | + | chr4_4:45762749-45762768 | None:intergenic | 40.0% | |
| GCATTTCCAGTTATCACATG+TGG | + | chr4_4:45762802-45762821 | None:intergenic | 40.0% | |
| AAATCCAGAACACTAACCCT+TGG | + | chr4_4:45762967-45762986 | None:intergenic | 40.0% | |
| GATGTGTTTGGCAAAGCTAT+GGG | - | chr4_4:45763073-45763092 | Msa0683350:intron | 40.0% | |
| ATGTGTTTGGCAAAGCTATG+GGG | - | chr4_4:45763074-45763093 | Msa0683350:intron | 40.0% | |
| ! | CGTTGAGATTGTGACTGTTT+TGG | - | chr4_4:45763400-45763419 | Msa0683350:intron | 40.0% |
| TGAGAGGATTAGAAGTCCAT+GGG | + | chr4_4:45763483-45763502 | None:intergenic | 40.0% | |
| ATGAGAGGATTAGAAGTCCA+TGG | + | chr4_4:45763484-45763503 | None:intergenic | 40.0% | |
| TATCACTTGGCAACTGAAGA+AGG | + | chr4_4:45763652-45763671 | None:intergenic | 40.0% | |
| TCTTCAGTTGCCAAGTGATA+AGG | - | chr4_4:45763652-45763671 | Msa0683350:intron | 40.0% | |
| !! | CTCAAAAGTGCCTTATCACT+TGG | + | chr4_4:45763665-45763684 | None:intergenic | 40.0% |
| CATATTTCTCAACAAGTGGG+CGG | + | chr4_4:45763700-45763719 | None:intergenic | 40.0% | |
| GCAGCATATTTCTCAACAAG+TGG | + | chr4_4:45763704-45763723 | None:intergenic | 40.0% | |
| ! | TTTCTTTGCTGATTATGCCG+AGG | - | chr4_4:45763850-45763869 | Msa0683350:intron | 40.0% |
| ! | AGATAGCTTTTGATGAGCCT+CGG | + | chr4_4:45763870-45763889 | None:intergenic | 40.0% |
| CATCAAAAGCTATCTGAGCT+TGG | - | chr4_4:45763875-45763894 | Msa0683350:intron | 40.0% | |
| TTAAGTTCCGCATTATCCAC+TGG | - | chr4_4:45763950-45763969 | Msa0683350:intron | 40.0% | |
| TAAGTTCCGCATTATCCACT+GGG | - | chr4_4:45763951-45763970 | Msa0683350:intron | 40.0% | |
| !! | CACAGACCTTGCTCTTATTT+TGG | - | chr4_4:45764075-45764094 | Msa0683350:five_prime_UTR | 40.0% |
| ! | CATCGAAGTTGGGTAGTTTT+TGG | - | chr4_4:45764101-45764120 | Msa0683350:five_prime_UTR | 40.0% |
| TTTGCTAGACATGATGAACG+TGG | - | chr4_4:45764130-45764149 | Msa0683350:five_prime_UTR | 40.0% | |
| ATGCGTAAAGAGCAACATTG+GGG | + | chr4_4:45764239-45764258 | None:intergenic | 40.0% | |
| CATGCGTAAAGAGCAACATT+GGG | + | chr4_4:45764240-45764259 | None:intergenic | 40.0% | |
| ACATGCGTAAAGAGCAACAT+TGG | + | chr4_4:45764241-45764260 | None:intergenic | 40.0% | |
| CGTCTAGCGTTTAATTGTCT+TGG | - | chr4_4:45764284-45764303 | Msa0683350:five_prime_UTR | 40.0% | |
| TTTGATTGGGTGGGTGAAGT+AGG | + | chr4_4:45760986-45761005 | None:intergenic | 45.0% | |
| ACGGTGTGATTTGATTGGGT+GGG | + | chr4_4:45760995-45761014 | None:intergenic | 45.0% | |
| GTTGGATGGATAAGATCGTG+GGG | + | chr4_4:45761072-45761091 | None:intergenic | 45.0% | |
| CGTTGGATGGATAAGATCGT+GGG | + | chr4_4:45761073-45761092 | None:intergenic | 45.0% | |
| !! | AGGAGGAGAAAGTTCTAGAG+GGG | + | chr4_4:45761106-45761125 | None:intergenic | 45.0% |
| ACACGCTCTTTCTTCACTCT+TGG | - | chr4_4:45761153-45761172 | Msa0683350:three_prime_UTR | 45.0% | |
| !! | CGTGAGTGCTGATTACCAAA+AGG | - | chr4_4:45761474-45761493 | Msa0683350:intron | 45.0% |
| ACAAAGACTGGTGGTCCTTT+CGG | - | chr4_4:45762013-45762032 | Msa0683350:intron | 45.0% | |
| ! | CTTGCTCATGGTGCTAACAA+CGG | - | chr4_4:45762058-45762077 | Msa0683350:intron | 45.0% |
| ACGGTCTTGATATCGCTGTT+AGG | - | chr4_4:45762077-45762096 | Msa0683350:intron | 45.0% | |
| !!! | TAGGCTTTTGGAGCCTCTTA+AGG | - | chr4_4:45762096-45762115 | Msa0683350:intron | 45.0% |
| TTTGTGGTTATGCAGTTGGC+TGG | - | chr4_4:45762232-45762251 | Msa0683350:intron | 45.0% | |
| ! | GTTGCTGTTGAGATTACTGG+TGG | - | chr4_4:45762259-45762278 | Msa0683350:intron | 45.0% |
| TAGTAAACGTACCTCCCTAC+CGG | + | chr4_4:45762305-45762324 | None:intergenic | 45.0% | |
| TGTCTTGCAGTTCACGTTCT+TGG | - | chr4_4:45762612-45762631 | Msa0683350:intron | 45.0% | |
| ! | TTGCAGGTTCTGACCATTTG+AGG | - | chr4_4:45763050-45763069 | Msa0683350:intron | 45.0% |
| ! | TGCAGGTTCTGACCATTTGA+GGG | - | chr4_4:45763051-45763070 | Msa0683350:intron | 45.0% |
| GACCATTTGAGGGATGTGTT+TGG | - | chr4_4:45763061-45763080 | Msa0683350:intron | 45.0% | |
| TGCCAAACACATCCCTCAAA+TGG | + | chr4_4:45763066-45763085 | None:intergenic | 45.0% | |
| GGATGTGTTTGGCAAAGCTA+TGG | - | chr4_4:45763072-45763091 | Msa0683350:intron | 45.0% | |
| !! | AAGGAGCGTTCTGGATTTGA+GGG | - | chr4_4:45763457-45763476 | Msa0683350:intron | 45.0% |
| ATGATTAGGGAGTTGTTGGG+TGG | - | chr4_4:45763614-45763633 | Msa0683350:intron | 45.0% | |
| TCAACTCCCAGTGGATAATG+CGG | + | chr4_4:45763960-45763979 | None:intergenic | 45.0% | |
| CAACATGAATCAACTCCCAG+TGG | + | chr4_4:45763969-45763988 | None:intergenic | 45.0% | |
| GTTTGCAGAAGCCTAAGGAA+CGG | - | chr4_4:45764006-45764025 | Msa0683350:five_prime_UTR | 45.0% | |
| CACGGTGTGATTTGATTGGG+TGG | + | chr4_4:45760996-45761015 | None:intergenic | 50.0% | |
| GCGTTGGATGGATAAGATCG+TGG | + | chr4_4:45761074-45761093 | None:intergenic | 50.0% | |
| !! | AGTTCTAGAGGGGGATTGTG+AGG | + | chr4_4:45761096-45761115 | None:intergenic | 50.0% |
| !! | GGAGGAGAAAGTTCTAGAGG+GGG | + | chr4_4:45761105-45761124 | None:intergenic | 50.0% |
| ! | CTCTCCTCGTGTCACTGTTA+GGG | - | chr4_4:45761182-45761201 | Msa0683350:three_prime_UTR | 50.0% |
| TGAACCCTAACAGTGACACG+AGG | + | chr4_4:45761189-45761208 | None:intergenic | 50.0% | |
| GGTAATCAGCACTCACGGTT+GGG | + | chr4_4:45761471-45761490 | None:intergenic | 50.0% | |
| TGGTAATCAGCACTCACGGT+TGG | + | chr4_4:45761472-45761491 | None:intergenic | 50.0% | |
| ! | TCGCCTTCTCAACAGCCTTT+TGG | + | chr4_4:45761492-45761511 | None:intergenic | 50.0% |
| TACGCCAAACGGAGCATAAG+AGG | + | chr4_4:45761556-45761575 | None:intergenic | 50.0% | |
| TTGTGTAGATGGCACTCTGC+TGG | - | chr4_4:45761974-45761993 | Msa0683350:intron | 50.0% | |
| ! | TGGTGCTTGATGGTTCCGAA+AGG | + | chr4_4:45762031-45762050 | None:intergenic | 50.0% |
| !! | AAGCTCAGCTTGGTGCTTGA+TGG | + | chr4_4:45762041-45762060 | None:intergenic | 50.0% |
| AGTAAACGTACCTCCCTACC+GGG | + | chr4_4:45762304-45762323 | None:intergenic | 50.0% | |
| TCCAGAACACTAACCCTTGG+TGG | + | chr4_4:45762964-45762983 | None:intergenic | 50.0% | |
| !! | CAAGGAGCGTTCTGGATTTG+AGG | - | chr4_4:45763456-45763475 | Msa0683350:intron | 50.0% |
| TTGTTGGGTGGTGAGAAGGA+AGG | - | chr4_4:45763626-45763645 | Msa0683350:intron | 50.0% | |
| CAACAAGTGGGCGGAATACA+GGG | + | chr4_4:45763691-45763710 | None:intergenic | 50.0% | |
| TCAACAAGTGGGCGGAATAC+AGG | + | chr4_4:45763692-45763711 | None:intergenic | 50.0% | |
| TAGGCTTCTGCAAACCTGTG+TGG | + | chr4_4:45764001-45764020 | None:intergenic | 50.0% | |
| CACAGGTTTGCAGAAGCCTA+AGG | - | chr4_4:45764001-45764020 | Msa0683350:five_prime_UTR | 50.0% | |
| AACACCACACACCGTTCCTT+AGG | + | chr4_4:45764020-45764039 | None:intergenic | 50.0% | |
| AACGGTGTGTGGTGTTTGAG+AGG | - | chr4_4:45764024-45764043 | Msa0683350:five_prime_UTR | 50.0% | |
| TGTGTGGTGTTTGAGAGGCA+TGG | - | chr4_4:45764029-45764048 | Msa0683350:five_prime_UTR | 50.0% | |
| ! | GCTCTCCTCGTGTCACTGTT+AGG | - | chr4_4:45761181-45761200 | Msa0683350:three_prime_UTR | 55.0% |
| AGGCTGTTGAGAAGGCGAAG+AGG | - | chr4_4:45761494-45761513 | Msa0683350:intron | 55.0% | |
| AAGGCGAAGAGGAAGCTCAG+AGG | - | chr4_4:45761505-45761524 | Msa0683350:intron | 55.0% | |
| CGCTCCTCTTATGCTCCGTT+TGG | - | chr4_4:45761549-45761568 | Msa0683350:CDS | 55.0% | |
| ! | CACCAAGCTGAGCTTGCTCA+TGG | - | chr4_4:45762046-45762065 | Msa0683350:intron | 55.0% |
| CACCATGAGCAAGCTCAGCT+TGG | + | chr4_4:45762051-45762070 | None:intergenic | 55.0% | |
| CCTGAAGTTCCTTTCCACCC+CGG | - | chr4_4:45762283-45762302 | Msa0683350:CDS | 55.0% | |
| AAGTTCCTTTCCACCCCGGT+AGG | - | chr4_4:45762287-45762306 | Msa0683350:CDS | 55.0% | |
| AGTTCCTTTCCACCCCGGTA+GGG | - | chr4_4:45762288-45762307 | Msa0683350:CDS | 55.0% | |
| GTAAACGTACCTCCCTACCG+GGG | + | chr4_4:45762303-45762322 | None:intergenic | 55.0% | |
| ! | CACTAACCCTTGGTGGCATC+AGG | + | chr4_4:45762957-45762976 | None:intergenic | 55.0% |
| ! | GCCACCAAGGGTTAGTGTTC+TGG | - | chr4_4:45762960-45762979 | Msa0683350:CDS | 55.0% |
| AGCTATGGGGCTTAGTGACC+AGG | - | chr4_4:45763087-45763106 | Msa0683350:CDS | 55.0% | |
| CAGACAGAGCAACGATGTCC+TGG | + | chr4_4:45763108-45763127 | None:intergenic | 55.0% | |
| CAGGACATCGTTGCTCTGTC+TGG | - | chr4_4:45763106-45763125 | Msa0683350:CDS | 55.0% | |
| GACATCGTTGCTCTGTCTGG+TGG | - | chr4_4:45763109-45763128 | Msa0683350:CDS | 55.0% | |
| TTGGTAGGGAGCTGCACACA+AGG | - | chr4_4:45763438-45763457 | Msa0683350:intron | 55.0% | |
| ! | GTTCTGGATTTGAGGGCCCA+TGG | - | chr4_4:45763464-45763483 | Msa0683350:intron | 55.0% |
| GGAGTTGTTGGGTGGTGAGA+AGG | - | chr4_4:45763622-45763641 | Msa0683350:intron | 55.0% | |
| GAAGCCTAAGGAACGGTGTG+TGG | - | chr4_4:45764013-45764032 | Msa0683350:five_prime_UTR | 55.0% | |
| !! | GGGGATTGTGAGGCGTTGGA+TGG | + | chr4_4:45761086-45761105 | None:intergenic | 60.0% |
| AGAGGGGGATTGTGAGGCGT+TGG | + | chr4_4:45761090-45761109 | None:intergenic | 60.0% | |
| CCGGGGTGGAAAGGAACTTC+AGG | + | chr4_4:45762286-45762305 | None:intergenic | 60.0% | |
| AAGCCTGAGCCACCACCAGA+GGG | - | chr4_4:45762924-45762943 | Msa0683350:intron | 60.0% | |
| TCGCTTGCCTGATGCCACCA+AGG | - | chr4_4:45762947-45762966 | Msa0683350:CDS | 60.0% | |
| CGCTTGCCTGATGCCACCAA+GGG | - | chr4_4:45762948-45762967 | Msa0683350:CDS | 60.0% | |
| !! | GCTGCACACAAGGAGCGTTC+TGG | - | chr4_4:45763448-45763467 | Msa0683350:intron | 60.0% |
| TCCTTTCCACCCCGGTAGGG+AGG | - | chr4_4:45762291-45762310 | Msa0683350:CDS | 65.0% | |
| ACCTCCCTACCGGGGTGGAA+AGG | + | chr4_4:45762295-45762314 | None:intergenic | 65.0% | |
| AACGTACCTCCCTACCGGGG+TGG | + | chr4_4:45762300-45762319 | None:intergenic | 65.0% | |
| CAAGCCTGAGCCACCACCAG+AGG | - | chr4_4:45762923-45762942 | Msa0683350:intron | 65.0% | |
| TCAGGCAAGCGACCCTCTGG+TGG | + | chr4_4:45762939-45762958 | None:intergenic | 65.0% | |
| GCATCAGGCAAGCGACCCTC+TGG | + | chr4_4:45762942-45762961 | None:intergenic | 65.0% | |
| !! | CGACCCTCTGGTGGTGGCTC+AGG | + | chr4_4:45762930-45762949 | None:intergenic | 70.0% |
| GGCAAGCGACCCTCTGGTGG+TGG | + | chr4_4:45762936-45762955 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 45760907 | 45764336 | 45760907 | ID=Msa0683350;Name=Msa0683350 |
| chr4_4 | mRNA | 45760907 | 45764336 | 45760907 | ID=Msa0683350-mRNA-1;Parent=Msa0683350;Name=Msa0683350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=348|1|1|1|0.88|0.8|10|315|250 |
| chr4_4 | exon | 45760907 | 45761237 | 45760907 | ID=Msa0683350-mRNA-1:exon:11200;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45761346 | 45761404 | 45761346 | ID=Msa0683350-mRNA-1:exon:11199;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45761519 | 45761621 | 45761519 | ID=Msa0683350-mRNA-1:exon:11198;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45761719 | 45761798 | 45761719 | ID=Msa0683350-mRNA-1:exon:11197;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45762102 | 45762187 | 45762102 | ID=Msa0683350-mRNA-1:exon:11196;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45762274 | 45762322 | 45762274 | ID=Msa0683350-mRNA-1:exon:11195;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45762931 | 45762996 | 45762931 | ID=Msa0683350-mRNA-1:exon:11194;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45763087 | 45763261 | 45763087 | ID=Msa0683350-mRNA-1:exon:11193;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45763671 | 45763801 | 45763671 | ID=Msa0683350-mRNA-1:exon:11192;Parent=Msa0683350-mRNA-1 |
| chr4_4 | exon | 45764001 | 45764336 | 45764001 | ID=Msa0683350-mRNA-1:exon:11191;Parent=Msa0683350-mRNA-1 |
| chr4_4 | five_prime_UTR | 45764001 | 45764336 | 45764001 | ID=Msa0683350-mRNA-1:five_prime_utr;Parent=Msa0683350-mRNA-1 |
| chr4_4 | five_prime_UTR | 45763790 | 45763801 | 45763790 | ID=Msa0683350-mRNA-1:five_prime_utr;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45763671 | 45763789 | 45763671 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45763087 | 45763261 | 45763087 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45762931 | 45762996 | 45762931 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45762274 | 45762322 | 45762274 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45762102 | 45762187 | 45762102 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45761719 | 45761798 | 45761719 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45761519 | 45761621 | 45761519 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45761346 | 45761404 | 45761346 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | CDS | 45761222 | 45761237 | 45761222 | ID=Msa0683350-mRNA-1:cds;Parent=Msa0683350-mRNA-1 |
| chr4_4 | three_prime_UTR | 45760907 | 45761221 | 45760907 | ID=Msa0683350-mRNA-1:three_prime_utr;Parent=Msa0683350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
