AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648600

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648600 MtrunA17_Chr4g0040071 100.000 216 0 0 1 216 1 216 5.32e-164 451
Msa0648600 MtrunA17_Chr5g0411151 72.381 210 56 1 3 210 23 232 6.28e-115 327
Msa0648600 MtrunA17_Chr5g0395181 73.516 219 45 4 1 213 1 212 1.86e-113 323
Msa0648600 MtrunA17_Chr8g0366581 69.159 214 62 2 3 213 21 233 3.01e-107 308
Msa0648600 MtrunA17_Chr7g0265291 54.726 201 81 5 15 209 7 203 1.30e-70 214
Msa0648600 MtrunA17_Chr1g0179781 53.465 202 81 4 15 209 7 202 3.16e-70 213
Msa0648600 MtrunA17_Chr2g0308401 50.000 136 58 4 16 141 5 140 3.94e-40 134
Msa0648600 MtrunA17_Chr2g0297251 35.808 229 106 6 15 209 37 258 4.19e-40 137
Msa0648600 MtrunA17_Chr4g0020811 48.529 136 60 3 16 141 7 142 6.73e-40 134
Msa0648600 MtrunA17_Chr7g0230511 32.922 243 115 5 12 208 6 246 1.75e-38 133
Msa0648600 MtrunA17_Chr4g0065041 31.837 245 115 4 15 208 8 251 5.69e-38 132
Msa0648600 MtrunA17_Chr2g0320521 35.683 227 110 6 16 208 7 231 7.61e-38 131
Msa0648600 MtrunA17_Chr2g0320561 48.936 141 62 4 16 146 5 145 3.52e-36 127
Msa0648600 MtrunA17_Chr2g0320551 45.588 136 64 3 16 141 5 140 2.31e-34 120
Msa0648600 MtrunA17_Chr4g0052451 45.122 82 39 1 67 142 11 92 4.04e-21 84.0
Msa0648600 MtrunA17_Chr8g0392151 33.951 162 82 6 1 141 1 158 1.47e-17 78.6
Msa0648600 MtrunA17_Chr8g0386511 29.560 159 99 4 54 208 4 153 6.43e-17 74.7
Msa0648600 MtrunA17_Chr5g0434331 27.500 200 103 8 15 208 43 206 1.08e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648600 AT4G17900.1 68.868 212 55 4 3 209 22 227 3.38e-101 292
Msa0648600 AT1G32700.1 67.907 215 62 4 6 216 2 213 9.65e-97 281
Msa0648600 AT4G17900.2 69.000 200 57 3 12 209 17 213 2.01e-96 280
Msa0648600 AT1G21000.2 51.046 239 76 5 9 208 7 243 1.75e-76 230
Msa0648600 AT1G21000.1 51.046 239 76 5 9 208 10 246 2.17e-76 230
Msa0648600 AT1G32700.2 67.797 177 51 3 43 216 1 174 1.37e-75 226
Msa0648600 AT1G76590.1 46.964 247 90 4 1 208 1 245 8.07e-72 219
Msa0648600 AT5G46710.1 52.404 208 87 5 9 208 22 225 8.19e-70 213
Msa0648600 AT5G46710.3 52.404 208 87 5 9 208 6 209 8.28e-70 212
Msa0648600 AT1G43000.2 51.442 208 87 3 15 208 16 223 4.74e-68 208
Msa0648600 AT1G43000.1 51.442 208 87 3 15 208 9 216 6.33e-68 207
Msa0648600 AT5G46710.2 61.940 134 50 1 9 141 22 155 1.79e-60 187
Msa0648600 AT2G27930.1 45.631 206 82 5 15 210 4 189 2.31e-51 164
Msa0648600 AT2G27930.4 45.631 206 82 5 15 210 4 189 2.31e-51 164
Msa0648600 AT2G27930.3 46.988 166 78 2 15 170 4 169 9.63e-47 152
Msa0648600 AT2G27930.2 46.988 166 78 2 15 170 4 169 9.63e-47 152
Msa0648600 AT2G12646.1 48.148 135 69 1 15 149 6 139 2.72e-39 136
Msa0648600 AT2G12646.2 48.148 135 69 1 15 149 6 139 2.72e-39 136
Msa0648600 AT2G12646.3 48.148 135 69 1 15 149 3 136 2.86e-39 135
Msa0648600 AT3G60670.1 46.970 132 69 1 10 141 2 132 4.99e-37 130
Msa0648600 AT1G31040.1 37.611 226 107 7 15 208 19 242 1.08e-36 129
Msa0648600 AT2G27930.5 46.053 152 53 4 68 210 61 192 5.03e-32 115
Msa0648600 AT2G27930.6 46.053 152 53 4 68 210 61 192 5.03e-32 115
Msa0648600 AT2G01818.1 35.071 211 116 8 17 208 13 221 2.10e-25 99.4
Msa0648600 AT2G01818.2 46.250 80 37 3 74 147 9 88 4.69e-13 65.1

Find 100 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCCATTAAAGTCATATT+TGG 0.219460 4_3:-55065884 Msa0648600:three_prime_UTR
TTCTGAGATACAGAAATTTC+TGG 0.238023 4_3:-55066882 Msa0648600:CDS
CAAACCAAATATGACTTTAA+TGG 0.238611 4_3:+55065880 None:intergenic
TTTATTCTTCCTCAACTTCT+TGG 0.252653 4_3:+55066204 None:intergenic
TTGATGAATAAGTAGTAAAT+TGG 0.255905 4_3:+55067659 None:intergenic
TCCTTCAGCTTCTGCTCTCT+TGG 0.285072 4_3:-55066731 Msa0648600:CDS
TATAGCATTAGCATCTAGTT+TGG 0.334906 4_3:-55065577 Msa0648600:three_prime_UTR
CTTCTGCTCTCTTGGTTGTA+AGG 0.335637 4_3:-55066723 Msa0648600:intron
TTTACTGCTCTACATTGTAT+AGG 0.359530 4_3:-55065724 Msa0648600:three_prime_UTR
CAAACAACATAGAACAATTC+AGG 0.377021 4_3:-55067296 Msa0648600:intron
GCAGTATATGTAGTATAGTT+TGG 0.381382 4_3:-55065467 Msa0648600:three_prime_UTR
TGGAATTAGGGAGGTGGAGG+AGG 0.387306 4_3:-55067484 Msa0648600:intron
TTGGCTAGTGGACTAGTTAG+TGG 0.398101 4_3:-55065448 Msa0648600:three_prime_UTR
CTCAACCTAGGCCTGGAAAA+GGG 0.405265 4_3:-55066796 Msa0648600:CDS
TTAATAATAATGTTATATAG+TGG 0.407826 4_3:-55065984 Msa0648600:three_prime_UTR
GTGATGCTAAATGTATATAT+TGG 0.408963 4_3:-55065620 Msa0648600:three_prime_UTR
GAAGGGAAAAGGTTGGAACT+TGG 0.412855 4_3:+55067732 None:intergenic
AAGAAACTTGTTTGAAGAAG+TGG 0.413060 4_3:+55067421 None:intergenic
CTTTGCACTGTTTATAACAT+AGG 0.413289 4_3:+55066841 None:intergenic
TTCATACCATGATGTGATAA+GGG 0.415618 4_3:-55066906 Msa0648600:CDS
CTTCATACCATGATGTGATA+AGG 0.416229 4_3:-55066907 Msa0648600:CDS
AGCAAGACAAACAGAACAAA+GGG 0.420807 4_3:+55067324 None:intergenic
AAGTGGGGAATTTATTGTAC+TGG 0.422400 4_3:-55065647 Msa0648600:three_prime_UTR
CCTCAACCTAGGCCTGGAAA+AGG 0.425716 4_3:-55066797 Msa0648600:CDS
TTGTTCCCTGAGGCCGGTGT+AGG 0.425823 4_3:-55065749 Msa0648600:three_prime_UTR
GGCCTCAGGGAACAAGGCTC+TGG 0.427689 4_3:+55065757 None:intergenic
TTAAAGTCATATTTGGTTTG+AGG 0.429519 4_3:-55065877 Msa0648600:three_prime_UTR
TATATTGGTGGTTTATAGAA+AGG 0.430762 4_3:-55065605 Msa0648600:three_prime_UTR
GCTGTTGGAGGTGGTGTTGA+AGG 0.439304 4_3:+55066091 None:intergenic
ATTCTTCCTCAACTTCTTGG+AGG 0.449130 4_3:+55066207 None:intergenic
TAAATCCCTACACCGGCCTC+AGG 0.459529 4_3:+55065743 None:intergenic
GGAGAGAGAAGGGAAAAGGT+TGG 0.466532 4_3:+55067725 None:intergenic
GAACTTTGTACAAGTATGAA+TGG 0.483876 4_3:+55067704 None:intergenic
AGAGCCTTGTTCCCTGAGGC+CGG 0.485900 4_3:-55065755 Msa0648600:three_prime_UTR
GAATGGAGAGAGAAGGGAAA+AGG 0.486220 4_3:+55067721 None:intergenic
ATGAATAAGTAGTAAATTGG+AGG 0.486301 4_3:+55067662 None:intergenic
AAAAGGTTGGAACTTGGAAG+TGG 0.487499 4_3:+55067738 None:intergenic
ATACTGCTTTAAACTTTGAA+AGG 0.489687 4_3:+55065483 None:intergenic
AAGCAGGTAATAATATAAGT+GGG 0.493289 4_3:-55065663 Msa0648600:three_prime_UTR
GAAAGGCCTCAACCTAGGCC+TGG 0.497293 4_3:-55066803 Msa0648600:CDS
AAAGCAGGTAATAATATAAG+TGG 0.500799 4_3:-55065664 Msa0648600:three_prime_UTR
TTTGTAGTGGCGGGTGATGA+AGG 0.502057 4_3:+55067770 None:intergenic
AAGTATGAATGGAGAGAGAA+GGG 0.504399 4_3:+55067715 None:intergenic
TAACTCACTGCTGTTGGAGG+TGG 0.507231 4_3:+55066082 None:intergenic
AAATCATCATATCTCAATCA+TGG 0.507659 4_3:-55067603 Msa0648600:intron
TGTTCCCTGAGGCCGGTGTA+GGG 0.516004 4_3:-55065748 Msa0648600:three_prime_UTR
CTGTAACTCACTGCTGTTGG+AGG 0.521807 4_3:+55066079 None:intergenic
CTTTAAACTTTGAAAGGACA+AGG 0.526372 4_3:+55065489 None:intergenic
CAAGTATGAATGGAGAGAGA+AGG 0.526457 4_3:+55067714 None:intergenic
AAATGTTGAGTCAGAAAGAC+GGG 0.526940 4_3:-55066183 Msa0648600:CDS
AAATATGACTTTAATGGCTG+AGG 0.527532 4_3:+55065886 None:intergenic
TCAATGAATGGCATTAGTAA+TGG 0.528017 4_3:-55066145 Msa0648600:CDS
GAAGGCTACGGTCACAGACT+TGG 0.533320 4_3:+55066759 None:intergenic
AGAACAGTTAAGAGGAGGAA+AGG 0.533678 4_3:-55066058 Msa0648600:CDS
ATCAATGTTGATAGATAAGG+AGG 0.535527 4_3:-55066931 Msa0648600:intron
AAAGGTTGGAACTTGGAAGT+GGG 0.536328 4_3:+55067739 None:intergenic
ATTCCACATAGAGCTCCAAT+GGG 0.539365 4_3:-55066034 Msa0648600:CDS
TGAATGCAATATGTATTGCT+TGG 0.542264 4_3:-55067362 Msa0648600:CDS
AATTCCACATAGAGCTCCAA+TGG 0.542578 4_3:-55066035 Msa0648600:CDS
CAGAAACCCTTATCACATCA+TGG 0.550564 4_3:+55066900 None:intergenic
TACACCGGCCTCAGGGAACA+AGG 0.553985 4_3:+55065751 None:intergenic
GCTACGGTCACAGACTTGGC+AGG 0.558501 4_3:+55066763 None:intergenic
AATGGCATTAGTAATGGAAG+TGG 0.564357 4_3:-55066139 Msa0648600:CDS
TCAACCTAGGCCTGGAAAAG+GGG 0.568882 4_3:-55066795 Msa0648600:CDS
TGAGTTACAGAACAGTTAAG+AGG 0.568904 4_3:-55066066 Msa0648600:CDS
TTGTAGTGGCGGGTGATGAA+GGG 0.569215 4_3:+55067771 None:intergenic
TGAATGAAAGGCCTCAACCT+AGG 0.570401 4_3:-55066808 Msa0648600:CDS
TTGGAACCTCCAAGAAGTTG+AGG 0.571156 4_3:-55066213 Msa0648600:CDS
AGTCAGAAAGACGGGTCTGA+TGG 0.574132 4_3:-55066175 Msa0648600:CDS
ATGCTAAATGTATATATTGG+TGG 0.574221 4_3:-55065617 Msa0648600:three_prime_UTR
GTCACAGACTTGGCAGGTGT+TGG 0.575139 4_3:+55066769 None:intergenic
TGAAGAAGTGGTTGCAACCA+TGG 0.585315 4_3:+55067433 None:intergenic
AGAAGCTGAAGGAATCAAGA+AGG 0.586801 4_3:+55066741 None:intergenic
GTTCTGTAACTCACTGCTGT+TGG 0.597323 4_3:+55066076 None:intergenic
GTGTTATCACTTTCTCAAAG+TGG 0.601693 4_3:-55065912 Msa0648600:three_prime_UTR
AAGAAAACAAGTGGCCACCA+TGG 0.602626 4_3:-55067450 Msa0648600:CDS
ATGTAGTATAGTTTGGCTAG+TGG 0.602856 4_3:-55065460 Msa0648600:three_prime_UTR
TGAAGGAATCAAGAAGGCTA+CGG 0.603890 4_3:+55066747 None:intergenic
AAGCAAGACAAACAGAACAA+AGG 0.605554 4_3:+55067323 None:intergenic
TATTGCTTGGATTGTAACAA+TGG 0.606739 4_3:-55067349 Msa0648600:CDS
AAAATGTTGAGTCAGAAAGA+CGG 0.611575 4_3:-55066184 Msa0648600:CDS
GTCTTTACAAGTTCGCGCAG+AGG 0.612421 4_3:-55065850 Msa0648600:three_prime_UTR
AGCAGGTAATAATATAAGTG+GGG 0.616086 4_3:-55065662 Msa0648600:three_prime_UTR
GATGGTGAAGAGTCAATGAA+TGG 0.621483 4_3:-55066157 Msa0648600:CDS
GAAATTTCTGGACATAGCAG+AGG 0.630359 4_3:-55066870 Msa0648600:CDS
ACCAAGAGAGCAGAAGCTGA+AGG 0.631097 4_3:+55066730 None:intergenic
AAATCCCTACACCGGCCTCA+GGG 0.631913 4_3:+55065744 None:intergenic
CACTCTTGTGTGAATCTGAG+TGG 0.634730 4_3:+55067383 None:intergenic
CTTTGAAAGGACAAGGACAA+TGG 0.640162 4_3:+55065496 None:intergenic
ACAATGAAGAAGAAAACAAG+TGG 0.648499 4_3:-55067459 Msa0648600:CDS
TCCACATAGAGCTCCAATGG+GGG 0.650434 4_3:-55066032 Msa0648600:CDS
GTTACAGAACAGTTAAGAGG+AGG 0.658849 4_3:-55066063 Msa0648600:CDS
CCACATAGAGCTCCAATGGG+GGG 0.658994 4_3:-55066031 Msa0648600:CDS
ATGGTCATGTACCAAACCAA+GGG 0.669200 4_3:+55065515 None:intergenic
AATGGTCATGTACCAAACCA+AGG 0.674933 4_3:+55065514 None:intergenic
AAGGTTGGAACTTGGAAGTG+GGG 0.677339 4_3:+55067740 None:intergenic
CACCAGAGCCTTGTTCCCTG+AGG 0.708292 4_3:-55065759 Msa0648600:three_prime_UTR
AGAGCAGTAAATCCCTACAC+CGG 0.717748 4_3:+55065736 None:intergenic
TTCCACATAGAGCTCCAATG+GGG 0.732872 4_3:-55066033 Msa0648600:CDS
AGAAGTGGTTGCAACCATGG+TGG 0.773987 4_3:+55067436 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCAAATTTTTTCAATT+GGG + chr4_3:55065747-55065766 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAT+TGG + chr4_3:55065748-55065767 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGAATT+AGG - chr4_3:55065765-55065784 Msa0648600:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGGAATTA+GGG - chr4_3:55065766-55065785 Msa0648600:three_prime_UTR 10.0%
!! ACAATATAATAATCAAATTT+AGG + chr4_3:55066830-55066849 None:intergenic 10.0%
!! TTAATAATAATGTTATATAG+TGG - chr4_3:55067278-55067297 Msa0648600:intron 10.0%
!! GAATATAAAAAAAAAAATGT+TGG - chr4_3:55067575-55067594 Msa0648600:intron 10.0%
!!! AAAATCAAATTTTTTCAATT+GGG + chr4_3:55065747-55065766 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAT+TGG + chr4_3:55065748-55065767 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGAATT+AGG - chr4_3:55065765-55065784 Msa0648600:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGGAATTA+GGG - chr4_3:55065766-55065785 Msa0648600:three_prime_UTR 10.0%
!! ACAATATAATAATCAAATTT+AGG + chr4_3:55066830-55066849 None:intergenic 10.0%
!! TTAATAATAATGTTATATAG+TGG - chr4_3:55067278-55067297 Msa0648600:intron 10.0%
!! GAATATAAAAAAAAAAATGT+TGG - chr4_3:55067575-55067594 Msa0648600:intron 10.0%
!! TTACAAAAAAAACATCAAAA+GGG + chr4_3:55065704-55065723 None:intergenic 15.0%
!! ATTACAAAAAAAACATCAAA+AGG + chr4_3:55065705-55065724 None:intergenic 15.0%
!!! TTTTGCTAAAATAAATAATG+TGG - chr4_3:55066277-55066296 Msa0648600:intron 15.0%
!! TTACAAAAAAAACATCAAAA+GGG + chr4_3:55065704-55065723 None:intergenic 15.0%
!! ATTACAAAAAAAACATCAAA+AGG + chr4_3:55065705-55065724 None:intergenic 15.0%
!!! TTTTGCTAAAATAAATAATG+TGG - chr4_3:55066277-55066296 Msa0648600:intron 15.0%
!! TTGATGAATAAGTAGTAAAT+TGG + chr4_3:55065606-55065625 None:intergenic 20.0%
!!! TTGATGATTTTGTTGAAATT+GGG + chr4_3:55065640-55065659 None:intergenic 20.0%
!!! TTTGATGATTTTGTTGAAAT+TGG + chr4_3:55065641-55065660 None:intergenic 20.0%
!!! ACTGATTTGAAACAAAAAAT+TGG + chr4_3:55065994-55066013 None:intergenic 20.0%
!!! TATCAAATTTTCACAGAATT+GGG + chr4_3:55066054-55066073 None:intergenic 20.0%
!!! TTATCAAATTTTCACAGAAT+TGG + chr4_3:55066055-55066074 None:intergenic 20.0%
!! TAATTATTGAATTGGTCAAA+GGG + chr4_3:55066138-55066157 None:intergenic 20.0%
!! TTAATTATTGAATTGGTCAA+AGG + chr4_3:55066139-55066158 None:intergenic 20.0%
!! ATAACAAGCAATTATTCAAA+TGG + chr4_3:55066172-55066191 None:intergenic 20.0%
!!! TTTATCAATGTTGATAGATA+AGG - chr4_3:55066328-55066347 Msa0648600:intron 20.0%
!!! TCTATTGTAAAGTGTTAAAA+TGG - chr4_3:55066737-55066756 Msa0648600:CDS 20.0%
!!! AAAGTGTTAAAATGGTTAAA+TGG - chr4_3:55066745-55066764 Msa0648600:CDS 20.0%
!! TATAAAGTATGCAAACATTA+AGG - chr4_3:55066923-55066942 Msa0648600:intron 20.0%
!!! CATTTTTCTTACTTTTTCAA+AGG + chr4_3:55066965-55066984 None:intergenic 20.0%
!!! ATTTTTTCTTGTTAGATTGT+TGG - chr4_3:55067030-55067049 Msa0648600:intron 20.0%
!! TATACCTAAAAATATACAAC+AGG - chr4_3:55067328-55067347 Msa0648600:CDS 20.0%
!!! ACATAAAATCATATTTTCTG+AGG + chr4_3:55067466-55067485 None:intergenic 20.0%
!! TACATTGTATAGGAAAAAAA+GGG - chr4_3:55067548-55067567 Msa0648600:intron 20.0%
!! TTGATGAATAAGTAGTAAAT+TGG + chr4_3:55065606-55065625 None:intergenic 20.0%
!!! TTGATGATTTTGTTGAAATT+GGG + chr4_3:55065640-55065659 None:intergenic 20.0%
!!! TTTGATGATTTTGTTGAAAT+TGG + chr4_3:55065641-55065660 None:intergenic 20.0%
!!! ACTGATTTGAAACAAAAAAT+TGG + chr4_3:55065994-55066013 None:intergenic 20.0%
!!! TATCAAATTTTCACAGAATT+GGG + chr4_3:55066054-55066073 None:intergenic 20.0%
!!! TTATCAAATTTTCACAGAAT+TGG + chr4_3:55066055-55066074 None:intergenic 20.0%
!! TAATTATTGAATTGGTCAAA+GGG + chr4_3:55066138-55066157 None:intergenic 20.0%
!! TTAATTATTGAATTGGTCAA+AGG + chr4_3:55066139-55066158 None:intergenic 20.0%
!! ATAACAAGCAATTATTCAAA+TGG + chr4_3:55066172-55066191 None:intergenic 20.0%
!!! TTTATCAATGTTGATAGATA+AGG - chr4_3:55066328-55066347 Msa0648600:intron 20.0%
!!! TCTATTGTAAAGTGTTAAAA+TGG - chr4_3:55066737-55066756 Msa0648600:CDS 20.0%
!!! AAAGTGTTAAAATGGTTAAA+TGG - chr4_3:55066745-55066764 Msa0648600:CDS 20.0%
!! TATAAAGTATGCAAACATTA+AGG - chr4_3:55066923-55066942 Msa0648600:intron 20.0%
!!! CATTTTTCTTACTTTTTCAA+AGG + chr4_3:55066965-55066984 None:intergenic 20.0%
!!! ATTTTTTCTTGTTAGATTGT+TGG - chr4_3:55067030-55067049 Msa0648600:intron 20.0%
!! TATACCTAAAAATATACAAC+AGG - chr4_3:55067328-55067347 Msa0648600:CDS 20.0%
!!! ACATAAAATCATATTTTCTG+AGG + chr4_3:55067466-55067485 None:intergenic 20.0%
!! TACATTGTATAGGAAAAAAA+GGG - chr4_3:55067548-55067567 Msa0648600:intron 20.0%
! ATGAATAAGTAGTAAATTGG+AGG + chr4_3:55065603-55065622 None:intergenic 25.0%
! AAATCATCATATCTCAATCA+TGG - chr4_3:55065659-55065678 Msa0648600:three_prime_UTR 25.0%
!!! TTTTTTTTTTGGAATTAGGG+AGG - chr4_3:55065769-55065788 Msa0648600:three_prime_UTR 25.0%
! TCAAATCAGTTAATTGTGTT+TGG - chr4_3:55066004-55066023 Msa0648600:exon 25.0%
!!! AGATTGTGTTTTTGAATGAA+AGG - chr4_3:55066442-55066461 Msa0648600:intron 25.0%
! CAGTTAGATGTATATGAAAT+TGG + chr4_3:55066592-55066611 None:intergenic 25.0%
! CGTTAAGTCAAAATAATCAA+GGG + chr4_3:55066623-55066642 None:intergenic 25.0%
!!! ATTATTTTGACTTAACGCTA+TGG - chr4_3:55066626-55066645 Msa0648600:intron 25.0%
! ACTTTATACAGAAAAGAAGT+AGG + chr4_3:55066911-55066930 None:intergenic 25.0%
!! AACACCTGTTGTATATTTTT+AGG + chr4_3:55067335-55067354 None:intergenic 25.0%
! CAAACCAAATATGACTTTAA+TGG + chr4_3:55067385-55067404 None:intergenic 25.0%
!!! TTAAAGTCATATTTGGTTTG+AGG - chr4_3:55067385-55067404 Msa0648600:CDS 25.0%
! CTACATTGTATAGGAAAAAA+AGG - chr4_3:55067547-55067566 Msa0648600:intron 25.0%
! AAAAAAAAATGTTGGAAAGC+AGG - chr4_3:55067583-55067602 Msa0648600:intron 25.0%
! AAAGCAGGTAATAATATAAG+TGG - chr4_3:55067598-55067617 Msa0648600:intron 25.0%
! AAGCAGGTAATAATATAAGT+GGG - chr4_3:55067599-55067618 Msa0648600:intron 25.0%
! GTGATGCTAAATGTATATAT+TGG - chr4_3:55067642-55067661 Msa0648600:five_prime_UTR 25.0%
! ATGCTAAATGTATATATTGG+TGG - chr4_3:55067645-55067664 Msa0648600:five_prime_UTR 25.0%
!! TATATTGGTGGTTTATAGAA+AGG - chr4_3:55067657-55067676 Msa0648600:five_prime_UTR 25.0%
!! GTGTATTAATTTTATTCCCT+TGG - chr4_3:55067731-55067750 Msa0648600:five_prime_UTR 25.0%
!! TTAATTTTATTCCCTTGGTT+TGG - chr4_3:55067736-55067755 Msa0648600:five_prime_UTR 25.0%
!! ATACTGCTTTAAACTTTGAA+AGG + chr4_3:55067782-55067801 None:intergenic 25.0%
! ATGAATAAGTAGTAAATTGG+AGG + chr4_3:55065603-55065622 None:intergenic 25.0%
! AAATCATCATATCTCAATCA+TGG - chr4_3:55065659-55065678 Msa0648600:three_prime_UTR 25.0%
!!! TTTTTTTTTTGGAATTAGGG+AGG - chr4_3:55065769-55065788 Msa0648600:three_prime_UTR 25.0%
! TCAAATCAGTTAATTGTGTT+TGG - chr4_3:55066004-55066023 Msa0648600:exon 25.0%
!!! AGATTGTGTTTTTGAATGAA+AGG - chr4_3:55066442-55066461 Msa0648600:intron 25.0%
! CAGTTAGATGTATATGAAAT+TGG + chr4_3:55066592-55066611 None:intergenic 25.0%
! CGTTAAGTCAAAATAATCAA+GGG + chr4_3:55066623-55066642 None:intergenic 25.0%
!!! ATTATTTTGACTTAACGCTA+TGG - chr4_3:55066626-55066645 Msa0648600:intron 25.0%
! ACTTTATACAGAAAAGAAGT+AGG + chr4_3:55066911-55066930 None:intergenic 25.0%
!! AACACCTGTTGTATATTTTT+AGG + chr4_3:55067335-55067354 None:intergenic 25.0%
! CAAACCAAATATGACTTTAA+TGG + chr4_3:55067385-55067404 None:intergenic 25.0%
!!! TTAAAGTCATATTTGGTTTG+AGG - chr4_3:55067385-55067404 Msa0648600:CDS 25.0%
! CTACATTGTATAGGAAAAAA+AGG - chr4_3:55067547-55067566 Msa0648600:intron 25.0%
! AAAAAAAAATGTTGGAAAGC+AGG - chr4_3:55067583-55067602 Msa0648600:intron 25.0%
! AAAGCAGGTAATAATATAAG+TGG - chr4_3:55067598-55067617 Msa0648600:intron 25.0%
! AAGCAGGTAATAATATAAGT+GGG - chr4_3:55067599-55067618 Msa0648600:intron 25.0%
! GTGATGCTAAATGTATATAT+TGG - chr4_3:55067642-55067661 Msa0648600:five_prime_UTR 25.0%
! ATGCTAAATGTATATATTGG+TGG - chr4_3:55067645-55067664 Msa0648600:five_prime_UTR 25.0%
!! TATATTGGTGGTTTATAGAA+AGG - chr4_3:55067657-55067676 Msa0648600:five_prime_UTR 25.0%
!! GTGTATTAATTTTATTCCCT+TGG - chr4_3:55067731-55067750 Msa0648600:five_prime_UTR 25.0%
!! TTAATTTTATTCCCTTGGTT+TGG - chr4_3:55067736-55067755 Msa0648600:five_prime_UTR 25.0%
!! ATACTGCTTTAAACTTTGAA+AGG + chr4_3:55067782-55067801 None:intergenic 25.0%
GAACTTTGTACAAGTATGAA+TGG + chr4_3:55065561-55065580 None:intergenic 30.0%
ACAATGAAGAAGAAAACAAG+TGG - chr4_3:55065803-55065822 Msa0648600:three_prime_UTR 30.0%
! AAGAAACTTGTTTGAAGAAG+TGG + chr4_3:55065844-55065863 None:intergenic 30.0%
TGAATGCAATATGTATTGCT+TGG - chr4_3:55065900-55065919 Msa0648600:three_prime_UTR 30.0%
TATTGCTTGGATTGTAACAA+TGG - chr4_3:55065913-55065932 Msa0648600:three_prime_UTR 30.0%
CAAACAACATAGAACAATTC+AGG - chr4_3:55065966-55065985 Msa0648600:three_prime_UTR 30.0%
TCAGTTAATTGTGTTTGGTT+TGG - chr4_3:55066009-55066028 Msa0648600:CDS 30.0%
! ATCAATGTTGATAGATAAGG+AGG - chr4_3:55066331-55066350 Msa0648600:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr4_3:55066356-55066375 Msa0648600:intron 30.0%
!! TTCTGAGATACAGAAATTTC+TGG - chr4_3:55066380-55066399 Msa0648600:intron 30.0%
CTTTGCACTGTTTATAACAT+AGG + chr4_3:55066424-55066443 None:intergenic 30.0%
GCGTTAAGTCAAAATAATCA+AGG + chr4_3:55066624-55066643 None:intergenic 30.0%
TTATACAGAAAAGAAGTAGG+AGG + chr4_3:55066908-55066927 None:intergenic 30.0%
! AGAAAAATGATGATGAGAGT+AGG - chr4_3:55066976-55066995 Msa0648600:intron 30.0%
TTTATTCTTCCTCAACTTCT+TGG + chr4_3:55067061-55067080 None:intergenic 30.0%
AAAATGTTGAGTCAGAAAGA+CGG - chr4_3:55067078-55067097 Msa0648600:intron 30.0%
TCAATGAATGGCATTAGTAA+TGG - chr4_3:55067117-55067136 Msa0648600:intron 30.0%
AAATATGACTTTAATGGCTG+AGG + chr4_3:55067379-55067398 None:intergenic 30.0%
TCAGCCATTAAAGTCATATT+TGG - chr4_3:55067378-55067397 Msa0648600:CDS 30.0%
!!! ACTACTTTTTGGTGTAAATC+GGG + chr4_3:55067441-55067460 None:intergenic 30.0%
!!! CACTACTTTTTGGTGTAAAT+CGG + chr4_3:55067442-55067461 None:intergenic 30.0%
TTTACTGCTCTACATTGTAT+AGG - chr4_3:55067538-55067557 Msa0648600:intron 30.0%
AGCAGGTAATAATATAAGTG+GGG - chr4_3:55067600-55067619 Msa0648600:intron 30.0%
TATAGCATTAGCATCTAGTT+TGG - chr4_3:55067685-55067704 Msa0648600:five_prime_UTR 30.0%
! CTTTAAACTTTGAAAGGACA+AGG + chr4_3:55067776-55067795 None:intergenic 30.0%
GCAGTATATGTAGTATAGTT+TGG - chr4_3:55067795-55067814 Msa0648600:five_prime_UTR 30.0%
GAACTTTGTACAAGTATGAA+TGG + chr4_3:55065561-55065580 None:intergenic 30.0%
ACAATGAAGAAGAAAACAAG+TGG - chr4_3:55065803-55065822 Msa0648600:three_prime_UTR 30.0%
! AAGAAACTTGTTTGAAGAAG+TGG + chr4_3:55065844-55065863 None:intergenic 30.0%
TGAATGCAATATGTATTGCT+TGG - chr4_3:55065900-55065919 Msa0648600:three_prime_UTR 30.0%
TATTGCTTGGATTGTAACAA+TGG - chr4_3:55065913-55065932 Msa0648600:three_prime_UTR 30.0%
CAAACAACATAGAACAATTC+AGG - chr4_3:55065966-55065985 Msa0648600:three_prime_UTR 30.0%
TCAGTTAATTGTGTTTGGTT+TGG - chr4_3:55066009-55066028 Msa0648600:CDS 30.0%
! ATCAATGTTGATAGATAAGG+AGG - chr4_3:55066331-55066350 Msa0648600:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr4_3:55066356-55066375 Msa0648600:intron 30.0%
!! TTCTGAGATACAGAAATTTC+TGG - chr4_3:55066380-55066399 Msa0648600:intron 30.0%
CTTTGCACTGTTTATAACAT+AGG + chr4_3:55066424-55066443 None:intergenic 30.0%
GCGTTAAGTCAAAATAATCA+AGG + chr4_3:55066624-55066643 None:intergenic 30.0%
TTATACAGAAAAGAAGTAGG+AGG + chr4_3:55066908-55066927 None:intergenic 30.0%
! AGAAAAATGATGATGAGAGT+AGG - chr4_3:55066976-55066995 Msa0648600:intron 30.0%
TTTATTCTTCCTCAACTTCT+TGG + chr4_3:55067061-55067080 None:intergenic 30.0%
AAAATGTTGAGTCAGAAAGA+CGG - chr4_3:55067078-55067097 Msa0648600:intron 30.0%
TCAATGAATGGCATTAGTAA+TGG - chr4_3:55067117-55067136 Msa0648600:intron 30.0%
AAATATGACTTTAATGGCTG+AGG + chr4_3:55067379-55067398 None:intergenic 30.0%
TCAGCCATTAAAGTCATATT+TGG - chr4_3:55067378-55067397 Msa0648600:CDS 30.0%
!!! ACTACTTTTTGGTGTAAATC+GGG + chr4_3:55067441-55067460 None:intergenic 30.0%
!!! CACTACTTTTTGGTGTAAAT+CGG + chr4_3:55067442-55067461 None:intergenic 30.0%
TTTACTGCTCTACATTGTAT+AGG - chr4_3:55067538-55067557 Msa0648600:intron 30.0%
AGCAGGTAATAATATAAGTG+GGG - chr4_3:55067600-55067619 Msa0648600:intron 30.0%
TATAGCATTAGCATCTAGTT+TGG - chr4_3:55067685-55067704 Msa0648600:five_prime_UTR 30.0%
! CTTTAAACTTTGAAAGGACA+AGG + chr4_3:55067776-55067795 None:intergenic 30.0%
GCAGTATATGTAGTATAGTT+TGG - chr4_3:55067795-55067814 Msa0648600:five_prime_UTR 30.0%
AAGTATGAATGGAGAGAGAA+GGG + chr4_3:55065550-55065569 None:intergenic 35.0%
!!! TTTTTTTGGAATTAGGGAGG+TGG - chr4_3:55065772-55065791 Msa0648600:three_prime_UTR 35.0%
AGCAAGACAAACAGAACAAA+GGG + chr4_3:55065941-55065960 None:intergenic 35.0%
AAGCAAGACAAACAGAACAA+AGG + chr4_3:55065942-55065961 None:intergenic 35.0%
! TGTTGATTGTTCTGCTTTGA+TGG - chr4_3:55066215-55066234 Msa0648600:CDS 35.0%
CTTCATACCATGATGTGATA+AGG - chr4_3:55066355-55066374 Msa0648600:intron 35.0%
!!! TTTTGACTTAACGCTATGGT+TGG - chr4_3:55066630-55066649 Msa0648600:intron 35.0%
CAATAGAAAACTTTCCACAC+AGG + chr4_3:55066724-55066743 None:intergenic 35.0%
TGATCCAAAAATGCAGTTTG+GGG + chr4_3:55066774-55066793 None:intergenic 35.0%
GTGATCCAAAAATGCAGTTT+GGG + chr4_3:55066775-55066794 None:intergenic 35.0%
TGTGATCCAAAAATGCAGTT+TGG + chr4_3:55066776-55066795 None:intergenic 35.0%
! AAAATGATGATGAGAGTAGG+TGG - chr4_3:55066979-55066998 Msa0648600:intron 35.0%
AAATGTTGAGTCAGAAAGAC+GGG - chr4_3:55067079-55067098 Msa0648600:intron 35.0%
! AATGGCATTAGTAATGGAAG+TGG - chr4_3:55067123-55067142 Msa0648600:intron 35.0%
TGAGTTACAGAACAGTTAAG+AGG - chr4_3:55067196-55067215 Msa0648600:intron 35.0%
GTGTTATCACTTTCTCAAAG+TGG - chr4_3:55067350-55067369 Msa0648600:CDS 35.0%
!! TTTCTGAGGACACTACTTTT+TGG + chr4_3:55067452-55067471 None:intergenic 35.0%
AAGTGGGGAATTTATTGTAC+TGG - chr4_3:55067615-55067634 Msa0648600:five_prime_UTR 35.0%
ATGTAGTATAGTTTGGCTAG+TGG - chr4_3:55067802-55067821 Msa0648600:five_prime_UTR 35.0%
AAGTATGAATGGAGAGAGAA+GGG + chr4_3:55065550-55065569 None:intergenic 35.0%
!!! TTTTTTTGGAATTAGGGAGG+TGG - chr4_3:55065772-55065791 Msa0648600:three_prime_UTR 35.0%
AGCAAGACAAACAGAACAAA+GGG + chr4_3:55065941-55065960 None:intergenic 35.0%
AAGCAAGACAAACAGAACAA+AGG + chr4_3:55065942-55065961 None:intergenic 35.0%
! TGTTGATTGTTCTGCTTTGA+TGG - chr4_3:55066215-55066234 Msa0648600:CDS 35.0%
CTTCATACCATGATGTGATA+AGG - chr4_3:55066355-55066374 Msa0648600:intron 35.0%
!!! TTTTGACTTAACGCTATGGT+TGG - chr4_3:55066630-55066649 Msa0648600:intron 35.0%
CAATAGAAAACTTTCCACAC+AGG + chr4_3:55066724-55066743 None:intergenic 35.0%
TGATCCAAAAATGCAGTTTG+GGG + chr4_3:55066774-55066793 None:intergenic 35.0%
GTGATCCAAAAATGCAGTTT+GGG + chr4_3:55066775-55066794 None:intergenic 35.0%
TGTGATCCAAAAATGCAGTT+TGG + chr4_3:55066776-55066795 None:intergenic 35.0%
! AAAATGATGATGAGAGTAGG+TGG - chr4_3:55066979-55066998 Msa0648600:intron 35.0%
AAATGTTGAGTCAGAAAGAC+GGG - chr4_3:55067079-55067098 Msa0648600:intron 35.0%
! AATGGCATTAGTAATGGAAG+TGG - chr4_3:55067123-55067142 Msa0648600:intron 35.0%
TGAGTTACAGAACAGTTAAG+AGG - chr4_3:55067196-55067215 Msa0648600:intron 35.0%
GTGTTATCACTTTCTCAAAG+TGG - chr4_3:55067350-55067369 Msa0648600:CDS 35.0%
!! TTTCTGAGGACACTACTTTT+TGG + chr4_3:55067452-55067471 None:intergenic 35.0%
AAGTGGGGAATTTATTGTAC+TGG - chr4_3:55067615-55067634 Msa0648600:five_prime_UTR 35.0%
ATGTAGTATAGTTTGGCTAG+TGG - chr4_3:55067802-55067821 Msa0648600:five_prime_UTR 35.0%
AAAGGTTGGAACTTGGAAGT+GGG + chr4_3:55065526-55065545 None:intergenic 40.0%
AAAAGGTTGGAACTTGGAAG+TGG + chr4_3:55065527-55065546 None:intergenic 40.0%
CAAGTATGAATGGAGAGAGA+AGG + chr4_3:55065551-55065570 None:intergenic 40.0%
GATTGTTCTGCTTTGATGGA+TGG - chr4_3:55066219-55066238 Msa0648600:CDS 40.0%
CAGAAACCCTTATCACATCA+TGG + chr4_3:55066365-55066384 None:intergenic 40.0%
! GAAATTTCTGGACATAGCAG+AGG - chr4_3:55066392-55066411 Msa0648600:intron 40.0%
TGAAGGAATCAAGAAGGCTA+CGG + chr4_3:55066518-55066537 None:intergenic 40.0%
AGAAGCTGAAGGAATCAAGA+AGG + chr4_3:55066524-55066543 None:intergenic 40.0%
!! TAACGCTATGGTTGGTAATC+TGG - chr4_3:55066638-55066657 Msa0648600:intron 40.0%
! TTGGTAATCTGGAGTTCAGT+CGG - chr4_3:55066649-55066668 Msa0648600:intron 40.0%
TCAGTCGGGTAAGTAAAGTT+TGG - chr4_3:55066664-55066683 Msa0648600:intron 40.0%
GATCCAAAAATGCAGTTTGG+GGG + chr4_3:55066773-55066792 None:intergenic 40.0%
ATTCTTCCTCAACTTCTTGG+AGG + chr4_3:55067058-55067077 None:intergenic 40.0%
GATGGTGAAGAGTCAATGAA+TGG - chr4_3:55067105-55067124 Msa0648600:intron 40.0%
GTTACAGAACAGTTAAGAGG+AGG - chr4_3:55067199-55067218 Msa0648600:intron 40.0%
AGAACAGTTAAGAGGAGGAA+AGG - chr4_3:55067204-55067223 Msa0648600:intron 40.0%
AATTCCACATAGAGCTCCAA+TGG - chr4_3:55067227-55067246 Msa0648600:intron 40.0%
ATTCCACATAGAGCTCCAAT+GGG - chr4_3:55067228-55067247 Msa0648600:intron 40.0%
ATGGTCATGTACCAAACCAA+GGG + chr4_3:55067750-55067769 None:intergenic 40.0%
AATGGTCATGTACCAAACCA+AGG + chr4_3:55067751-55067770 None:intergenic 40.0%
! CTTTGAAAGGACAAGGACAA+TGG + chr4_3:55067769-55067788 None:intergenic 40.0%
AAAGGTTGGAACTTGGAAGT+GGG + chr4_3:55065526-55065545 None:intergenic 40.0%
AAAAGGTTGGAACTTGGAAG+TGG + chr4_3:55065527-55065546 None:intergenic 40.0%
CAAGTATGAATGGAGAGAGA+AGG + chr4_3:55065551-55065570 None:intergenic 40.0%
GATTGTTCTGCTTTGATGGA+TGG - chr4_3:55066219-55066238 Msa0648600:CDS 40.0%
CAGAAACCCTTATCACATCA+TGG + chr4_3:55066365-55066384 None:intergenic 40.0%
! GAAATTTCTGGACATAGCAG+AGG - chr4_3:55066392-55066411 Msa0648600:intron 40.0%
TGAAGGAATCAAGAAGGCTA+CGG + chr4_3:55066518-55066537 None:intergenic 40.0%
AGAAGCTGAAGGAATCAAGA+AGG + chr4_3:55066524-55066543 None:intergenic 40.0%
!! TAACGCTATGGTTGGTAATC+TGG - chr4_3:55066638-55066657 Msa0648600:intron 40.0%
! TTGGTAATCTGGAGTTCAGT+CGG - chr4_3:55066649-55066668 Msa0648600:intron 40.0%
TCAGTCGGGTAAGTAAAGTT+TGG - chr4_3:55066664-55066683 Msa0648600:intron 40.0%
GATCCAAAAATGCAGTTTGG+GGG + chr4_3:55066773-55066792 None:intergenic 40.0%
ATTCTTCCTCAACTTCTTGG+AGG + chr4_3:55067058-55067077 None:intergenic 40.0%
GATGGTGAAGAGTCAATGAA+TGG - chr4_3:55067105-55067124 Msa0648600:intron 40.0%
GTTACAGAACAGTTAAGAGG+AGG - chr4_3:55067199-55067218 Msa0648600:intron 40.0%
AGAACAGTTAAGAGGAGGAA+AGG - chr4_3:55067204-55067223 Msa0648600:intron 40.0%
AATTCCACATAGAGCTCCAA+TGG - chr4_3:55067227-55067246 Msa0648600:intron 40.0%
ATTCCACATAGAGCTCCAAT+GGG - chr4_3:55067228-55067247 Msa0648600:intron 40.0%
ATGGTCATGTACCAAACCAA+GGG + chr4_3:55067750-55067769 None:intergenic 40.0%
AATGGTCATGTACCAAACCA+AGG + chr4_3:55067751-55067770 None:intergenic 40.0%
! CTTTGAAAGGACAAGGACAA+TGG + chr4_3:55067769-55067788 None:intergenic 40.0%
AAGGTTGGAACTTGGAAGTG+GGG + chr4_3:55065525-55065544 None:intergenic 45.0%
GAAGGGAAAAGGTTGGAACT+TGG + chr4_3:55065533-55065552 None:intergenic 45.0%
GAATGGAGAGAGAAGGGAAA+AGG + chr4_3:55065544-55065563 None:intergenic 45.0%
!!! TTTTGGAATTAGGGAGGTGG+AGG - chr4_3:55065775-55065794 Msa0648600:three_prime_UTR 45.0%
AAGAAAACAAGTGGCCACCA+TGG - chr4_3:55065812-55065831 Msa0648600:three_prime_UTR 45.0%
TGAAGAAGTGGTTGCAACCA+TGG + chr4_3:55065832-55065851 None:intergenic 45.0%
CACTCTTGTGTGAATCTGAG+TGG + chr4_3:55065882-55065901 None:intergenic 45.0%
! GTTCTGCTTTGATGGATGGA+TGG - chr4_3:55066223-55066242 Msa0648600:intron 45.0%
TGAATGAAAGGCCTCAACCT+AGG - chr4_3:55066454-55066473 Msa0648600:intron 45.0%
CTTCTGCTCTCTTGGTTGTA+AGG - chr4_3:55066539-55066558 Msa0648600:intron 45.0%
! TGGTAATCTGGAGTTCAGTC+GGG - chr4_3:55066650-55066669 Msa0648600:intron 45.0%
TAGAAGCTGATTGACCTGTG+TGG - chr4_3:55066707-55066726 Msa0648600:intron 45.0%
! GATCCCCCAAACTGCATTTT+TGG - chr4_3:55066767-55066786 Msa0648600:CDS 45.0%
TTGGAACCTCCAAGAAGTTG+AGG - chr4_3:55067049-55067068 Msa0648600:intron 45.0%
GTTCTGTAACTCACTGCTGT+TGG + chr4_3:55067189-55067208 None:intergenic 45.0%
TTCCACATAGAGCTCCAATG+GGG - chr4_3:55067229-55067248 Msa0648600:intron 45.0%
ATAATGATTCCTCCCCCCAT+TGG + chr4_3:55067246-55067265 None:intergenic 45.0%
AGAGCAGTAAATCCCTACAC+CGG + chr4_3:55067529-55067548 None:intergenic 45.0%
!! TTGGCTAGTGGACTAGTTAG+TGG - chr4_3:55067814-55067833 Msa0648600:five_prime_UTR 45.0%
AAGGTTGGAACTTGGAAGTG+GGG + chr4_3:55065525-55065544 None:intergenic 45.0%
GAAGGGAAAAGGTTGGAACT+TGG + chr4_3:55065533-55065552 None:intergenic 45.0%
GAATGGAGAGAGAAGGGAAA+AGG + chr4_3:55065544-55065563 None:intergenic 45.0%
!!! TTTTGGAATTAGGGAGGTGG+AGG - chr4_3:55065775-55065794 Msa0648600:three_prime_UTR 45.0%
AAGAAAACAAGTGGCCACCA+TGG - chr4_3:55065812-55065831 Msa0648600:three_prime_UTR 45.0%
TGAAGAAGTGGTTGCAACCA+TGG + chr4_3:55065832-55065851 None:intergenic 45.0%
CACTCTTGTGTGAATCTGAG+TGG + chr4_3:55065882-55065901 None:intergenic 45.0%
! GTTCTGCTTTGATGGATGGA+TGG - chr4_3:55066223-55066242 Msa0648600:intron 45.0%
TGAATGAAAGGCCTCAACCT+AGG - chr4_3:55066454-55066473 Msa0648600:intron 45.0%
CTTCTGCTCTCTTGGTTGTA+AGG - chr4_3:55066539-55066558 Msa0648600:intron 45.0%
! TGGTAATCTGGAGTTCAGTC+GGG - chr4_3:55066650-55066669 Msa0648600:intron 45.0%
TAGAAGCTGATTGACCTGTG+TGG - chr4_3:55066707-55066726 Msa0648600:intron 45.0%
! GATCCCCCAAACTGCATTTT+TGG - chr4_3:55066767-55066786 Msa0648600:CDS 45.0%
TTGGAACCTCCAAGAAGTTG+AGG - chr4_3:55067049-55067068 Msa0648600:intron 45.0%
GTTCTGTAACTCACTGCTGT+TGG + chr4_3:55067189-55067208 None:intergenic 45.0%
TTCCACATAGAGCTCCAATG+GGG - chr4_3:55067229-55067248 Msa0648600:intron 45.0%
ATAATGATTCCTCCCCCCAT+TGG + chr4_3:55067246-55067265 None:intergenic 45.0%
AGAGCAGTAAATCCCTACAC+CGG + chr4_3:55067529-55067548 None:intergenic 45.0%
!!! TTTGATTTTTTTTTTTTTTT+TGG - chr4_3:55065758-55065777 Msa0648600:three_prime_UTR 5.0%
!!! ATTTGATAATAAAATAATTT+TGG - chr4_3:55066066-55066085 Msa0648600:CDS 5.0%
!!! ATTTTTTTTAATTATTGAAT+TGG + chr4_3:55066146-55066165 None:intergenic 5.0%
!!! GATAATTTTTATTTAAATTA+TGG - chr4_3:55066245-55066264 Msa0648600:intron 5.0%
!!! TTTGATTTTTTTTTTTTTTT+TGG - chr4_3:55065758-55065777 Msa0648600:three_prime_UTR 5.0%
!!! ATTTGATAATAAAATAATTT+TGG - chr4_3:55066066-55066085 Msa0648600:CDS 5.0%
!!! ATTTTTTTTAATTATTGAAT+TGG + chr4_3:55066146-55066165 None:intergenic 5.0%
!!! GATAATTTTTATTTAAATTA+TGG - chr4_3:55066245-55066264 Msa0648600:intron 5.0%
!! TTGTAGTGGCGGGTGATGAA+GGG + chr4_3:55065494-55065513 None:intergenic 50.0%
!! TTTGTAGTGGCGGGTGATGA+AGG + chr4_3:55065495-55065514 None:intergenic 50.0%
! GGCTATGCTTTTGTAGTGGC+GGG + chr4_3:55065504-55065523 None:intergenic 50.0%
! GGGCTATGCTTTTGTAGTGG+CGG + chr4_3:55065505-55065524 None:intergenic 50.0%
! GTGGGGCTATGCTTTTGTAG+TGG + chr4_3:55065508-55065527 None:intergenic 50.0%
GGAGAGAGAAGGGAAAAGGT+TGG + chr4_3:55065540-55065559 None:intergenic 50.0%
AGAAGTGGTTGCAACCATGG+TGG + chr4_3:55065829-55065848 None:intergenic 50.0%
CTCAACCTAGGCCTGGAAAA+GGG - chr4_3:55066466-55066485 Msa0648600:intron 50.0%
TCAACCTAGGCCTGGAAAAG+GGG - chr4_3:55066467-55066486 Msa0648600:intron 50.0%
TCCTTCAGCTTCTGCTCTCT+TGG - chr4_3:55066531-55066550 Msa0648600:intron 50.0%
ACCAAGAGAGCAGAAGCTGA+AGG + chr4_3:55066535-55066554 None:intergenic 50.0%
AGTCAGAAAGACGGGTCTGA+TGG - chr4_3:55067087-55067106 Msa0648600:intron 50.0%
TAACTCACTGCTGTTGGAGG+TGG + chr4_3:55067183-55067202 None:intergenic 50.0%
CTGTAACTCACTGCTGTTGG+AGG + chr4_3:55067186-55067205 None:intergenic 50.0%
TCCACATAGAGCTCCAATGG+GGG - chr4_3:55067230-55067249 Msa0648600:intron 50.0%
GTCTTTACAAGTTCGCGCAG+AGG - chr4_3:55067412-55067431 Msa0648600:CDS 50.0%
!! TTGTAGTGGCGGGTGATGAA+GGG + chr4_3:55065494-55065513 None:intergenic 50.0%
!! TTTGTAGTGGCGGGTGATGA+AGG + chr4_3:55065495-55065514 None:intergenic 50.0%
! GGCTATGCTTTTGTAGTGGC+GGG + chr4_3:55065504-55065523 None:intergenic 50.0%
! GGGCTATGCTTTTGTAGTGG+CGG + chr4_3:55065505-55065524 None:intergenic 50.0%
! GTGGGGCTATGCTTTTGTAG+TGG + chr4_3:55065508-55065527 None:intergenic 50.0%
GGAGAGAGAAGGGAAAAGGT+TGG + chr4_3:55065540-55065559 None:intergenic 50.0%
AGAAGTGGTTGCAACCATGG+TGG + chr4_3:55065829-55065848 None:intergenic 50.0%
CTCAACCTAGGCCTGGAAAA+GGG - chr4_3:55066466-55066485 Msa0648600:intron 50.0%
TCAACCTAGGCCTGGAAAAG+GGG - chr4_3:55066467-55066486 Msa0648600:intron 50.0%
TCCTTCAGCTTCTGCTCTCT+TGG - chr4_3:55066531-55066550 Msa0648600:intron 50.0%
ACCAAGAGAGCAGAAGCTGA+AGG + chr4_3:55066535-55066554 None:intergenic 50.0%
AGTCAGAAAGACGGGTCTGA+TGG - chr4_3:55067087-55067106 Msa0648600:intron 50.0%
TAACTCACTGCTGTTGGAGG+TGG + chr4_3:55067183-55067202 None:intergenic 50.0%
CTGTAACTCACTGCTGTTGG+AGG + chr4_3:55067186-55067205 None:intergenic 50.0%
TCCACATAGAGCTCCAATGG+GGG - chr4_3:55067230-55067249 Msa0648600:intron 50.0%
GTCTTTACAAGTTCGCGCAG+AGG - chr4_3:55067412-55067431 Msa0648600:CDS 50.0%
TGGAATTAGGGAGGTGGAGG+AGG - chr4_3:55065778-55065797 Msa0648600:three_prime_UTR 55.0%
! CCTTTTCCAGGCCTAGGTTG+AGG + chr4_3:55066468-55066487 None:intergenic 55.0%
CCTCAACCTAGGCCTGGAAA+AGG - chr4_3:55066465-55066484 Msa0648600:intron 55.0%
!!! GTGTTGGTGACCCCTTTTCC+AGG + chr4_3:55066480-55066499 None:intergenic 55.0%
GTCACAGACTTGGCAGGTGT+TGG + chr4_3:55066496-55066515 None:intergenic 55.0%
GAAGGCTACGGTCACAGACT+TGG + chr4_3:55066506-55066525 None:intergenic 55.0%
! GCTGTTGGAGGTGGTGTTGA+AGG + chr4_3:55067174-55067193 None:intergenic 55.0%
CCACATAGAGCTCCAATGGG+GGG - chr4_3:55067231-55067250 Msa0648600:intron 55.0%
AAATCCCTACACCGGCCTCA+GGG + chr4_3:55067521-55067540 None:intergenic 55.0%
TAAATCCCTACACCGGCCTC+AGG + chr4_3:55067522-55067541 None:intergenic 55.0%
TGGAATTAGGGAGGTGGAGG+AGG - chr4_3:55065778-55065797 Msa0648600:three_prime_UTR 55.0%
! CCTTTTCCAGGCCTAGGTTG+AGG + chr4_3:55066468-55066487 None:intergenic 55.0%
CCTCAACCTAGGCCTGGAAA+AGG - chr4_3:55066465-55066484 Msa0648600:intron 55.0%
!!! GTGTTGGTGACCCCTTTTCC+AGG + chr4_3:55066480-55066499 None:intergenic 55.0%
GTCACAGACTTGGCAGGTGT+TGG + chr4_3:55066496-55066515 None:intergenic 55.0%
GAAGGCTACGGTCACAGACT+TGG + chr4_3:55066506-55066525 None:intergenic 55.0%
! GCTGTTGGAGGTGGTGTTGA+AGG + chr4_3:55067174-55067193 None:intergenic 55.0%
CCACATAGAGCTCCAATGGG+GGG - chr4_3:55067231-55067250 Msa0648600:intron 55.0%
AAATCCCTACACCGGCCTCA+GGG + chr4_3:55067521-55067540 None:intergenic 55.0%
TAAATCCCTACACCGGCCTC+AGG + chr4_3:55067522-55067541 None:intergenic 55.0%
GAAAGGCCTCAACCTAGGCC+TGG - chr4_3:55066459-55066478 Msa0648600:intron 60.0%
! GTGACCCCTTTTCCAGGCCT+AGG + chr4_3:55066474-55066493 None:intergenic 60.0%
GCTACGGTCACAGACTTGGC+AGG + chr4_3:55066502-55066521 None:intergenic 60.0%
CCCCCCATTGGAGCTCTATG+TGG + chr4_3:55067234-55067253 None:intergenic 60.0%
CATAGAGCTCCAATGGGGGG+AGG - chr4_3:55067234-55067253 Msa0648600:intron 60.0%
!! CACCAGAGCCTTGTTCCCTG+AGG - chr4_3:55067503-55067522 Msa0648600:intron 60.0%
!! AGAGCCTTGTTCCCTGAGGC+CGG - chr4_3:55067507-55067526 Msa0648600:intron 60.0%
TACACCGGCCTCAGGGAACA+AGG + chr4_3:55067514-55067533 None:intergenic 60.0%
TTGTTCCCTGAGGCCGGTGT+AGG - chr4_3:55067513-55067532 Msa0648600:intron 60.0%
TGTTCCCTGAGGCCGGTGTA+GGG - chr4_3:55067514-55067533 Msa0648600:intron 60.0%
GAAAGGCCTCAACCTAGGCC+TGG - chr4_3:55066459-55066478 Msa0648600:intron 60.0%
! GTGACCCCTTTTCCAGGCCT+AGG + chr4_3:55066474-55066493 None:intergenic 60.0%
GCTACGGTCACAGACTTGGC+AGG + chr4_3:55066502-55066521 None:intergenic 60.0%
CCCCCCATTGGAGCTCTATG+TGG + chr4_3:55067234-55067253 None:intergenic 60.0%
CATAGAGCTCCAATGGGGGG+AGG - chr4_3:55067234-55067253 Msa0648600:intron 60.0%
!! CACCAGAGCCTTGTTCCCTG+AGG - chr4_3:55067503-55067522 Msa0648600:intron 60.0%
!! AGAGCCTTGTTCCCTGAGGC+CGG - chr4_3:55067507-55067526 Msa0648600:intron 60.0%
TACACCGGCCTCAGGGAACA+AGG + chr4_3:55067514-55067533 None:intergenic 60.0%
TTGTTCCCTGAGGCCGGTGT+AGG - chr4_3:55067513-55067532 Msa0648600:intron 60.0%
TGTTCCCTGAGGCCGGTGTA+GGG - chr4_3:55067514-55067533 Msa0648600:intron 60.0%
GGCCTCAGGGAACAAGGCTC+TGG + chr4_3:55067508-55067527 None:intergenic 65.0%
GGCCTCAGGGAACAAGGCTC+TGG + chr4_3:55067508-55067527 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55065448 55067836 55065448 ID=Msa0648600;Name=Msa0648600
chr4_3 mRNA 55065448 55067836 55065448 ID=Msa0648600-mRNA-1;Parent=Msa0648600;Name=Msa0648600-mRNA-1;_AED=0.04;_eAED=0.04;_QI=230|1|1|1|1|1|4|561|216
chr4_3 exon 55065448 55066239 55065448 ID=Msa0648600-mRNA-1:exon:13994;Parent=Msa0648600-mRNA-1
chr4_3 exon 55066724 55066939 55066724 ID=Msa0648600-mRNA-1:exon:13993;Parent=Msa0648600-mRNA-1
chr4_3 exon 55067297 55067497 55067297 ID=Msa0648600-mRNA-1:exon:13992;Parent=Msa0648600-mRNA-1
chr4_3 exon 55067604 55067836 55067604 ID=Msa0648600-mRNA-1:exon:13991;Parent=Msa0648600-mRNA-1
chr4_3 five_prime_UTR 55067607 55067836 55067607 ID=Msa0648600-mRNA-1:five_prime_utr;Parent=Msa0648600-mRNA-1
chr4_3 CDS 55067604 55067606 55067604 ID=Msa0648600-mRNA-1:cds;Parent=Msa0648600-mRNA-1
chr4_3 CDS 55067297 55067497 55067297 ID=Msa0648600-mRNA-1:cds;Parent=Msa0648600-mRNA-1
chr4_3 CDS 55066724 55066939 55066724 ID=Msa0648600-mRNA-1:cds;Parent=Msa0648600-mRNA-1
chr4_3 CDS 55066009 55066239 55066009 ID=Msa0648600-mRNA-1:cds;Parent=Msa0648600-mRNA-1
chr4_3 three_prime_UTR 55065448 55066008 55065448 ID=Msa0648600-mRNA-1:three_prime_utr;Parent=Msa0648600-mRNA-1
Gene Sequence

>Msa0648600

ATGGGAGGTGGAGGAGGTAACAATGAAGAAGAAAACAAGTGGCCACCATGGTTGCAACCACTTCTTCAAACAAGTTTCTTTGTTCAATGCAAAGTCCACTCAGATTCACACAAGAGTGAATGCAATATGTATTGCTTGGATTGTAACAATGGTGCCCTTTGTTCTGTTTGTCTTGCTTCTCACAAACAACATAGAACAATTCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTTTCTGAGATACAGAAATTTCTGGACATAGCAGAGGTTCAAACCTATGTTATAAACAGTGCAAAGATTGTGTTTTTGAATGAAAGGCCTCAACCTAGGCCTGGAAAAGGGGTCACCAACACCTGCCAAGTCTGTGACCGTAGCCTTCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTGAGGAAGAATAAAATGTTGAGTCAGAAAGACGGGTCTGATGGTGAAGAGTCAATGAATGGCATTAGTAATGGAAGTGGCAGAAACAGAAGTCATAGTTTTACACCTTCAACACCACCTCCAACAGCAGTGAGTTACAGAACAGTTAAGAGGAGGAAAGGAATTCCACATAGAGCTCCAATGGGGGGAGGAATCATTATAGAATTCTAA
Protein sequence

>Msa0648600

MGGGGGNNEEENKWPPWLQPLLQTSFFVQCKVHSDSHKSECNMYCLDCNNGALCSVCLASHKQHRTIQIRRSSYHDVIRVSEIQKFLDIAEVQTYVINSAKIVFLNERPQPRPGKGVTNTCQVCDRSLLDSFSFCSLGCKIVGTSKKLRKNKMLSQKDGSDGEESMNGISNGSGRNRSHSFTPSTPPPTAVSYRTVKRRKGIPHRAPMGGGIIIEF*