AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0648650

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648650 MtrunA17_Chr4g0040071 100.000 216 0 0 1 216 1 216 5.32e-164 451
Msa0648650 MtrunA17_Chr5g0411151 72.381 210 56 1 3 210 23 232 6.28e-115 327
Msa0648650 MtrunA17_Chr5g0395181 73.516 219 45 4 1 213 1 212 1.86e-113 323
Msa0648650 MtrunA17_Chr8g0366581 69.159 214 62 2 3 213 21 233 3.01e-107 308
Msa0648650 MtrunA17_Chr7g0265291 54.726 201 81 5 15 209 7 203 1.30e-70 214
Msa0648650 MtrunA17_Chr1g0179781 53.465 202 81 4 15 209 7 202 3.16e-70 213
Msa0648650 MtrunA17_Chr2g0308401 50.000 136 58 4 16 141 5 140 3.94e-40 134
Msa0648650 MtrunA17_Chr2g0297251 35.808 229 106 6 15 209 37 258 4.19e-40 137
Msa0648650 MtrunA17_Chr4g0020811 48.529 136 60 3 16 141 7 142 6.73e-40 134
Msa0648650 MtrunA17_Chr7g0230511 32.922 243 115 5 12 208 6 246 1.75e-38 133
Msa0648650 MtrunA17_Chr4g0065041 31.837 245 115 4 15 208 8 251 5.69e-38 132
Msa0648650 MtrunA17_Chr2g0320521 35.683 227 110 6 16 208 7 231 7.61e-38 131
Msa0648650 MtrunA17_Chr2g0320561 48.936 141 62 4 16 146 5 145 3.52e-36 127
Msa0648650 MtrunA17_Chr2g0320551 45.588 136 64 3 16 141 5 140 2.31e-34 120
Msa0648650 MtrunA17_Chr4g0052451 45.122 82 39 1 67 142 11 92 4.04e-21 84.0
Msa0648650 MtrunA17_Chr8g0392151 33.951 162 82 6 1 141 1 158 1.47e-17 78.6
Msa0648650 MtrunA17_Chr8g0386511 29.560 159 99 4 54 208 4 153 6.43e-17 74.7
Msa0648650 MtrunA17_Chr5g0434331 27.500 200 103 8 15 208 43 206 1.08e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0648650 AT4G17900.1 68.868 212 55 4 3 209 22 227 3.38e-101 292
Msa0648650 AT1G32700.1 67.907 215 62 4 6 216 2 213 9.65e-97 281
Msa0648650 AT4G17900.2 69.000 200 57 3 12 209 17 213 2.01e-96 280
Msa0648650 AT1G21000.2 51.046 239 76 5 9 208 7 243 1.75e-76 230
Msa0648650 AT1G21000.1 51.046 239 76 5 9 208 10 246 2.17e-76 230
Msa0648650 AT1G32700.2 67.797 177 51 3 43 216 1 174 1.37e-75 226
Msa0648650 AT1G76590.1 46.964 247 90 4 1 208 1 245 8.07e-72 219
Msa0648650 AT5G46710.1 52.404 208 87 5 9 208 22 225 8.19e-70 213
Msa0648650 AT5G46710.3 52.404 208 87 5 9 208 6 209 8.28e-70 212
Msa0648650 AT1G43000.2 51.442 208 87 3 15 208 16 223 4.74e-68 208
Msa0648650 AT1G43000.1 51.442 208 87 3 15 208 9 216 6.33e-68 207
Msa0648650 AT5G46710.2 61.940 134 50 1 9 141 22 155 1.79e-60 187
Msa0648650 AT2G27930.1 45.631 206 82 5 15 210 4 189 2.31e-51 164
Msa0648650 AT2G27930.4 45.631 206 82 5 15 210 4 189 2.31e-51 164
Msa0648650 AT2G27930.3 46.988 166 78 2 15 170 4 169 9.63e-47 152
Msa0648650 AT2G27930.2 46.988 166 78 2 15 170 4 169 9.63e-47 152
Msa0648650 AT2G12646.1 48.148 135 69 1 15 149 6 139 2.72e-39 136
Msa0648650 AT2G12646.2 48.148 135 69 1 15 149 6 139 2.72e-39 136
Msa0648650 AT2G12646.3 48.148 135 69 1 15 149 3 136 2.86e-39 135
Msa0648650 AT3G60670.1 46.970 132 69 1 10 141 2 132 4.99e-37 130
Msa0648650 AT1G31040.1 37.611 226 107 7 15 208 19 242 1.08e-36 129
Msa0648650 AT2G27930.5 46.053 152 53 4 68 210 61 192 5.03e-32 115
Msa0648650 AT2G27930.6 46.053 152 53 4 68 210 61 192 5.03e-32 115
Msa0648650 AT2G01818.1 35.071 211 116 8 17 208 13 221 2.10e-25 99.4
Msa0648650 AT2G01818.2 46.250 80 37 3 74 147 9 88 4.69e-13 65.1

Find 100 sgRNAs with CRISPR-Local

Find 351 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGCCATTAAAGTCATATT+TGG 0.219460 4_3:-55108677 Msa0648650:three_prime_UTR
TTCTGAGATACAGAAATTTC+TGG 0.238023 4_3:-55109675 Msa0648650:CDS
CAAACCAAATATGACTTTAA+TGG 0.238611 4_3:+55108673 None:intergenic
TTTATTCTTCCTCAACTTCT+TGG 0.252653 4_3:+55108997 None:intergenic
TTGATGAATAAGTAGTAAAT+TGG 0.255905 4_3:+55110452 None:intergenic
TCCTTCAGCTTCTGCTCTCT+TGG 0.285072 4_3:-55109524 Msa0648650:CDS
TATAGCATTAGCATCTAGTT+TGG 0.334906 4_3:-55108370 Msa0648650:three_prime_UTR
CTTCTGCTCTCTTGGTTGTA+AGG 0.335637 4_3:-55109516 Msa0648650:intron
TTTACTGCTCTACATTGTAT+AGG 0.359530 4_3:-55108517 Msa0648650:three_prime_UTR
CAAACAACATAGAACAATTC+AGG 0.377021 4_3:-55110089 Msa0648650:intron
GCAGTATATGTAGTATAGTT+TGG 0.381382 4_3:-55108260 Msa0648650:three_prime_UTR
TGGAATTAGGGAGGTGGAGG+AGG 0.387306 4_3:-55110277 Msa0648650:intron
TTGGCTAGTGGACTAGTTAG+TGG 0.398101 4_3:-55108241 Msa0648650:three_prime_UTR
CTCAACCTAGGCCTGGAAAA+GGG 0.405265 4_3:-55109589 Msa0648650:CDS
TTAATAATAATGTTATATAG+TGG 0.407826 4_3:-55108777 Msa0648650:three_prime_UTR
GTGATGCTAAATGTATATAT+TGG 0.408963 4_3:-55108413 Msa0648650:three_prime_UTR
GAAGGGAAAAGGTTGGAACT+TGG 0.412855 4_3:+55110525 None:intergenic
AAGAAACTTGTTTGAAGAAG+TGG 0.413060 4_3:+55110214 None:intergenic
CTTTGCACTGTTTATAACAT+AGG 0.413289 4_3:+55109634 None:intergenic
TTCATACCATGATGTGATAA+GGG 0.415618 4_3:-55109699 Msa0648650:CDS
CTTCATACCATGATGTGATA+AGG 0.416229 4_3:-55109700 Msa0648650:CDS
AGCAAGACAAACAGAACAAA+GGG 0.420807 4_3:+55110117 None:intergenic
AAGTGGGGAATTTATTGTAC+TGG 0.422400 4_3:-55108440 Msa0648650:three_prime_UTR
CCTCAACCTAGGCCTGGAAA+AGG 0.425716 4_3:-55109590 Msa0648650:CDS
TTGTTCCCTGAGGCCGGTGT+AGG 0.425823 4_3:-55108542 Msa0648650:three_prime_UTR
GGCCTCAGGGAACAAGGCTC+TGG 0.427689 4_3:+55108550 None:intergenic
TTAAAGTCATATTTGGTTTG+AGG 0.429519 4_3:-55108670 Msa0648650:three_prime_UTR
TATATTGGTGGTTTATAGAA+AGG 0.430762 4_3:-55108398 Msa0648650:three_prime_UTR
GCTGTTGGAGGTGGTGTTGA+AGG 0.439304 4_3:+55108884 None:intergenic
ATTCTTCCTCAACTTCTTGG+AGG 0.449130 4_3:+55109000 None:intergenic
TAAATCCCTACACCGGCCTC+AGG 0.459529 4_3:+55108536 None:intergenic
GGAGAGAGAAGGGAAAAGGT+TGG 0.466532 4_3:+55110518 None:intergenic
GAACTTTGTACAAGTATGAA+TGG 0.483876 4_3:+55110497 None:intergenic
AGAGCCTTGTTCCCTGAGGC+CGG 0.485900 4_3:-55108548 Msa0648650:three_prime_UTR
GAATGGAGAGAGAAGGGAAA+AGG 0.486220 4_3:+55110514 None:intergenic
ATGAATAAGTAGTAAATTGG+AGG 0.486301 4_3:+55110455 None:intergenic
AAAAGGTTGGAACTTGGAAG+TGG 0.487499 4_3:+55110531 None:intergenic
ATACTGCTTTAAACTTTGAA+AGG 0.489687 4_3:+55108276 None:intergenic
AAGCAGGTAATAATATAAGT+GGG 0.493289 4_3:-55108456 Msa0648650:three_prime_UTR
GAAAGGCCTCAACCTAGGCC+TGG 0.497293 4_3:-55109596 Msa0648650:CDS
AAAGCAGGTAATAATATAAG+TGG 0.500799 4_3:-55108457 Msa0648650:three_prime_UTR
TTTGTAGTGGCGGGTGATGA+AGG 0.502057 4_3:+55110563 None:intergenic
AAGTATGAATGGAGAGAGAA+GGG 0.504399 4_3:+55110508 None:intergenic
TAACTCACTGCTGTTGGAGG+TGG 0.507231 4_3:+55108875 None:intergenic
AAATCATCATATCTCAATCA+TGG 0.507659 4_3:-55110396 Msa0648650:intron
TGTTCCCTGAGGCCGGTGTA+GGG 0.516004 4_3:-55108541 Msa0648650:three_prime_UTR
CTGTAACTCACTGCTGTTGG+AGG 0.521807 4_3:+55108872 None:intergenic
CTTTAAACTTTGAAAGGACA+AGG 0.526372 4_3:+55108282 None:intergenic
CAAGTATGAATGGAGAGAGA+AGG 0.526457 4_3:+55110507 None:intergenic
AAATGTTGAGTCAGAAAGAC+GGG 0.526940 4_3:-55108976 Msa0648650:CDS
AAATATGACTTTAATGGCTG+AGG 0.527532 4_3:+55108679 None:intergenic
TCAATGAATGGCATTAGTAA+TGG 0.528017 4_3:-55108938 Msa0648650:CDS
GAAGGCTACGGTCACAGACT+TGG 0.533320 4_3:+55109552 None:intergenic
AGAACAGTTAAGAGGAGGAA+AGG 0.533678 4_3:-55108851 Msa0648650:CDS
ATCAATGTTGATAGATAAGG+AGG 0.535527 4_3:-55109724 Msa0648650:intron
AAAGGTTGGAACTTGGAAGT+GGG 0.536328 4_3:+55110532 None:intergenic
ATTCCACATAGAGCTCCAAT+GGG 0.539365 4_3:-55108827 Msa0648650:CDS
TGAATGCAATATGTATTGCT+TGG 0.542264 4_3:-55110155 Msa0648650:CDS
AATTCCACATAGAGCTCCAA+TGG 0.542578 4_3:-55108828 Msa0648650:CDS
CAGAAACCCTTATCACATCA+TGG 0.550564 4_3:+55109693 None:intergenic
TACACCGGCCTCAGGGAACA+AGG 0.553985 4_3:+55108544 None:intergenic
GCTACGGTCACAGACTTGGC+AGG 0.558501 4_3:+55109556 None:intergenic
AATGGCATTAGTAATGGAAG+TGG 0.564357 4_3:-55108932 Msa0648650:CDS
TCAACCTAGGCCTGGAAAAG+GGG 0.568882 4_3:-55109588 Msa0648650:CDS
TGAGTTACAGAACAGTTAAG+AGG 0.568904 4_3:-55108859 Msa0648650:CDS
TTGTAGTGGCGGGTGATGAA+GGG 0.569215 4_3:+55110564 None:intergenic
TGAATGAAAGGCCTCAACCT+AGG 0.570401 4_3:-55109601 Msa0648650:CDS
TTGGAACCTCCAAGAAGTTG+AGG 0.571156 4_3:-55109006 Msa0648650:CDS
AGTCAGAAAGACGGGTCTGA+TGG 0.574132 4_3:-55108968 Msa0648650:CDS
ATGCTAAATGTATATATTGG+TGG 0.574221 4_3:-55108410 Msa0648650:three_prime_UTR
GTCACAGACTTGGCAGGTGT+TGG 0.575139 4_3:+55109562 None:intergenic
TGAAGAAGTGGTTGCAACCA+TGG 0.585315 4_3:+55110226 None:intergenic
AGAAGCTGAAGGAATCAAGA+AGG 0.586801 4_3:+55109534 None:intergenic
GTTCTGTAACTCACTGCTGT+TGG 0.597323 4_3:+55108869 None:intergenic
GTGTTATCACTTTCTCAAAG+TGG 0.601693 4_3:-55108705 Msa0648650:three_prime_UTR
AAGAAAACAAGTGGCCACCA+TGG 0.602626 4_3:-55110243 Msa0648650:CDS
ATGTAGTATAGTTTGGCTAG+TGG 0.602856 4_3:-55108253 Msa0648650:three_prime_UTR
TGAAGGAATCAAGAAGGCTA+CGG 0.603890 4_3:+55109540 None:intergenic
AAGCAAGACAAACAGAACAA+AGG 0.605554 4_3:+55110116 None:intergenic
TATTGCTTGGATTGTAACAA+TGG 0.606739 4_3:-55110142 Msa0648650:CDS
AAAATGTTGAGTCAGAAAGA+CGG 0.611575 4_3:-55108977 Msa0648650:CDS
GTCTTTACAAGTTCGCGCAG+AGG 0.612421 4_3:-55108643 Msa0648650:three_prime_UTR
AGCAGGTAATAATATAAGTG+GGG 0.616086 4_3:-55108455 Msa0648650:three_prime_UTR
GATGGTGAAGAGTCAATGAA+TGG 0.621483 4_3:-55108950 Msa0648650:CDS
GAAATTTCTGGACATAGCAG+AGG 0.630359 4_3:-55109663 Msa0648650:CDS
ACCAAGAGAGCAGAAGCTGA+AGG 0.631097 4_3:+55109523 None:intergenic
AAATCCCTACACCGGCCTCA+GGG 0.631913 4_3:+55108537 None:intergenic
CACTCTTGTGTGAATCTGAG+TGG 0.634730 4_3:+55110176 None:intergenic
CTTTGAAAGGACAAGGACAA+TGG 0.640162 4_3:+55108289 None:intergenic
ACAATGAAGAAGAAAACAAG+TGG 0.648499 4_3:-55110252 Msa0648650:CDS
TCCACATAGAGCTCCAATGG+GGG 0.650434 4_3:-55108825 Msa0648650:CDS
GTTACAGAACAGTTAAGAGG+AGG 0.658849 4_3:-55108856 Msa0648650:CDS
CCACATAGAGCTCCAATGGG+GGG 0.658994 4_3:-55108824 Msa0648650:CDS
ATGGTCATGTACCAAACCAA+GGG 0.669200 4_3:+55108308 None:intergenic
AATGGTCATGTACCAAACCA+AGG 0.674933 4_3:+55108307 None:intergenic
AAGGTTGGAACTTGGAAGTG+GGG 0.677339 4_3:+55110533 None:intergenic
CACCAGAGCCTTGTTCCCTG+AGG 0.708292 4_3:-55108552 Msa0648650:three_prime_UTR
AGAGCAGTAAATCCCTACAC+CGG 0.717748 4_3:+55108529 None:intergenic
TTCCACATAGAGCTCCAATG+GGG 0.732872 4_3:-55108826 Msa0648650:CDS
AGAAGTGGTTGCAACCATGG+TGG 0.773987 4_3:+55110229 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCAAATTTTTTCAATT+GGG + chr4_3:55108540-55108559 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAT+TGG + chr4_3:55108541-55108560 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGAATT+AGG - chr4_3:55108558-55108577 Msa0648650:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGGAATTA+GGG - chr4_3:55108559-55108578 Msa0648650:three_prime_UTR 10.0%
!! ACAATATAATAATCAAATTT+AGG + chr4_3:55109623-55109642 None:intergenic 10.0%
!! TTAATAATAATGTTATATAG+TGG - chr4_3:55110071-55110090 Msa0648650:intron 10.0%
!! GAATATAAAAAAAAAAATGT+TGG - chr4_3:55110368-55110387 Msa0648650:intron 10.0%
!!! AAAATCAAATTTTTTCAATT+GGG + chr4_3:55108540-55108559 None:intergenic 10.0%
!!! AAAAATCAAATTTTTTCAAT+TGG + chr4_3:55108541-55108560 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTGGAATT+AGG - chr4_3:55108558-55108577 Msa0648650:three_prime_UTR 10.0%
!!! TTTTTTTTTTTTTGGAATTA+GGG - chr4_3:55108559-55108578 Msa0648650:three_prime_UTR 10.0%
!! ACAATATAATAATCAAATTT+AGG + chr4_3:55109623-55109642 None:intergenic 10.0%
!! TTAATAATAATGTTATATAG+TGG - chr4_3:55110071-55110090 Msa0648650:intron 10.0%
!! GAATATAAAAAAAAAAATGT+TGG - chr4_3:55110368-55110387 Msa0648650:intron 10.0%
!! TTACAAAAAAAACATCAAAA+GGG + chr4_3:55108497-55108516 None:intergenic 15.0%
!! ATTACAAAAAAAACATCAAA+AGG + chr4_3:55108498-55108517 None:intergenic 15.0%
!!! TTTTGCTAAAATAAATAATG+TGG - chr4_3:55109070-55109089 Msa0648650:intron 15.0%
!! TTACAAAAAAAACATCAAAA+GGG + chr4_3:55108497-55108516 None:intergenic 15.0%
!! ATTACAAAAAAAACATCAAA+AGG + chr4_3:55108498-55108517 None:intergenic 15.0%
!!! TTTTGCTAAAATAAATAATG+TGG - chr4_3:55109070-55109089 Msa0648650:intron 15.0%
!! TTGATGAATAAGTAGTAAAT+TGG + chr4_3:55108399-55108418 None:intergenic 20.0%
!!! TTGATGATTTTGTTGAAATT+GGG + chr4_3:55108433-55108452 None:intergenic 20.0%
!!! TTTGATGATTTTGTTGAAAT+TGG + chr4_3:55108434-55108453 None:intergenic 20.0%
!!! ACTGATTTGAAACAAAAAAT+TGG + chr4_3:55108787-55108806 None:intergenic 20.0%
!!! TATCAAATTTTCACAGAATT+GGG + chr4_3:55108847-55108866 None:intergenic 20.0%
!!! TTATCAAATTTTCACAGAAT+TGG + chr4_3:55108848-55108867 None:intergenic 20.0%
!! TAATTATTGAATTGGTCAAA+GGG + chr4_3:55108931-55108950 None:intergenic 20.0%
!! TTAATTATTGAATTGGTCAA+AGG + chr4_3:55108932-55108951 None:intergenic 20.0%
!! ATAACAAGCAATTATTCAAA+TGG + chr4_3:55108965-55108984 None:intergenic 20.0%
!!! TTTATCAATGTTGATAGATA+AGG - chr4_3:55109121-55109140 Msa0648650:intron 20.0%
!!! TCTATTGTAAAGTGTTAAAA+TGG - chr4_3:55109530-55109549 Msa0648650:CDS 20.0%
!!! AAAGTGTTAAAATGGTTAAA+TGG - chr4_3:55109538-55109557 Msa0648650:CDS 20.0%
!! TATAAAGTATGCAAACATTA+AGG - chr4_3:55109716-55109735 Msa0648650:intron 20.0%
!!! CATTTTTCTTACTTTTTCAA+AGG + chr4_3:55109758-55109777 None:intergenic 20.0%
!!! ATTTTTTCTTGTTAGATTGT+TGG - chr4_3:55109823-55109842 Msa0648650:intron 20.0%
!! TATACCTAAAAATATACAAC+AGG - chr4_3:55110121-55110140 Msa0648650:CDS 20.0%
!!! ACATAAAATCATATTTTCTG+AGG + chr4_3:55110259-55110278 None:intergenic 20.0%
!! TACATTGTATAGGAAAAAAA+GGG - chr4_3:55110341-55110360 Msa0648650:intron 20.0%
!! TTGATGAATAAGTAGTAAAT+TGG + chr4_3:55108399-55108418 None:intergenic 20.0%
!!! TTGATGATTTTGTTGAAATT+GGG + chr4_3:55108433-55108452 None:intergenic 20.0%
!!! TTTGATGATTTTGTTGAAAT+TGG + chr4_3:55108434-55108453 None:intergenic 20.0%
!!! ACTGATTTGAAACAAAAAAT+TGG + chr4_3:55108787-55108806 None:intergenic 20.0%
!!! TATCAAATTTTCACAGAATT+GGG + chr4_3:55108847-55108866 None:intergenic 20.0%
!!! TTATCAAATTTTCACAGAAT+TGG + chr4_3:55108848-55108867 None:intergenic 20.0%
!! TAATTATTGAATTGGTCAAA+GGG + chr4_3:55108931-55108950 None:intergenic 20.0%
!! TTAATTATTGAATTGGTCAA+AGG + chr4_3:55108932-55108951 None:intergenic 20.0%
!! ATAACAAGCAATTATTCAAA+TGG + chr4_3:55108965-55108984 None:intergenic 20.0%
!!! TTTATCAATGTTGATAGATA+AGG - chr4_3:55109121-55109140 Msa0648650:intron 20.0%
!!! TCTATTGTAAAGTGTTAAAA+TGG - chr4_3:55109530-55109549 Msa0648650:CDS 20.0%
!!! AAAGTGTTAAAATGGTTAAA+TGG - chr4_3:55109538-55109557 Msa0648650:CDS 20.0%
!! TATAAAGTATGCAAACATTA+AGG - chr4_3:55109716-55109735 Msa0648650:intron 20.0%
!!! CATTTTTCTTACTTTTTCAA+AGG + chr4_3:55109758-55109777 None:intergenic 20.0%
!!! ATTTTTTCTTGTTAGATTGT+TGG - chr4_3:55109823-55109842 Msa0648650:intron 20.0%
!! TATACCTAAAAATATACAAC+AGG - chr4_3:55110121-55110140 Msa0648650:CDS 20.0%
!!! ACATAAAATCATATTTTCTG+AGG + chr4_3:55110259-55110278 None:intergenic 20.0%
!! TACATTGTATAGGAAAAAAA+GGG - chr4_3:55110341-55110360 Msa0648650:intron 20.0%
! ATGAATAAGTAGTAAATTGG+AGG + chr4_3:55108396-55108415 None:intergenic 25.0%
! AAATCATCATATCTCAATCA+TGG - chr4_3:55108452-55108471 Msa0648650:three_prime_UTR 25.0%
!!! TTTTTTTTTTGGAATTAGGG+AGG - chr4_3:55108562-55108581 Msa0648650:three_prime_UTR 25.0%
! TCAAATCAGTTAATTGTGTT+TGG - chr4_3:55108797-55108816 Msa0648650:exon 25.0%
!!! AGATTGTGTTTTTGAATGAA+AGG - chr4_3:55109235-55109254 Msa0648650:intron 25.0%
! CAGTTAGATGTATATGAAAT+TGG + chr4_3:55109385-55109404 None:intergenic 25.0%
! CGTTAAGTCAAAATAATCAA+GGG + chr4_3:55109416-55109435 None:intergenic 25.0%
!!! ATTATTTTGACTTAACGCTA+TGG - chr4_3:55109419-55109438 Msa0648650:intron 25.0%
! ACTTTATACAGAAAAGAAGT+AGG + chr4_3:55109704-55109723 None:intergenic 25.0%
!! AACACCTGTTGTATATTTTT+AGG + chr4_3:55110128-55110147 None:intergenic 25.0%
! CAAACCAAATATGACTTTAA+TGG + chr4_3:55110178-55110197 None:intergenic 25.0%
!!! TTAAAGTCATATTTGGTTTG+AGG - chr4_3:55110178-55110197 Msa0648650:CDS 25.0%
! CTACATTGTATAGGAAAAAA+AGG - chr4_3:55110340-55110359 Msa0648650:intron 25.0%
! AAAAAAAAATGTTGGAAAGC+AGG - chr4_3:55110376-55110395 Msa0648650:intron 25.0%
! AAAGCAGGTAATAATATAAG+TGG - chr4_3:55110391-55110410 Msa0648650:intron 25.0%
! AAGCAGGTAATAATATAAGT+GGG - chr4_3:55110392-55110411 Msa0648650:intron 25.0%
! GTGATGCTAAATGTATATAT+TGG - chr4_3:55110435-55110454 Msa0648650:five_prime_UTR 25.0%
! ATGCTAAATGTATATATTGG+TGG - chr4_3:55110438-55110457 Msa0648650:five_prime_UTR 25.0%
!! TATATTGGTGGTTTATAGAA+AGG - chr4_3:55110450-55110469 Msa0648650:five_prime_UTR 25.0%
!! GTGTATTAATTTTATTCCCT+TGG - chr4_3:55110524-55110543 Msa0648650:five_prime_UTR 25.0%
!! TTAATTTTATTCCCTTGGTT+TGG - chr4_3:55110529-55110548 Msa0648650:five_prime_UTR 25.0%
!! ATACTGCTTTAAACTTTGAA+AGG + chr4_3:55110575-55110594 None:intergenic 25.0%
! ATGAATAAGTAGTAAATTGG+AGG + chr4_3:55108396-55108415 None:intergenic 25.0%
! AAATCATCATATCTCAATCA+TGG - chr4_3:55108452-55108471 Msa0648650:three_prime_UTR 25.0%
!!! TTTTTTTTTTGGAATTAGGG+AGG - chr4_3:55108562-55108581 Msa0648650:three_prime_UTR 25.0%
! TCAAATCAGTTAATTGTGTT+TGG - chr4_3:55108797-55108816 Msa0648650:exon 25.0%
!!! AGATTGTGTTTTTGAATGAA+AGG - chr4_3:55109235-55109254 Msa0648650:intron 25.0%
! CAGTTAGATGTATATGAAAT+TGG + chr4_3:55109385-55109404 None:intergenic 25.0%
! CGTTAAGTCAAAATAATCAA+GGG + chr4_3:55109416-55109435 None:intergenic 25.0%
!!! ATTATTTTGACTTAACGCTA+TGG - chr4_3:55109419-55109438 Msa0648650:intron 25.0%
! ACTTTATACAGAAAAGAAGT+AGG + chr4_3:55109704-55109723 None:intergenic 25.0%
!! AACACCTGTTGTATATTTTT+AGG + chr4_3:55110128-55110147 None:intergenic 25.0%
! CAAACCAAATATGACTTTAA+TGG + chr4_3:55110178-55110197 None:intergenic 25.0%
!!! TTAAAGTCATATTTGGTTTG+AGG - chr4_3:55110178-55110197 Msa0648650:CDS 25.0%
! CTACATTGTATAGGAAAAAA+AGG - chr4_3:55110340-55110359 Msa0648650:intron 25.0%
! AAAAAAAAATGTTGGAAAGC+AGG - chr4_3:55110376-55110395 Msa0648650:intron 25.0%
! AAAGCAGGTAATAATATAAG+TGG - chr4_3:55110391-55110410 Msa0648650:intron 25.0%
! AAGCAGGTAATAATATAAGT+GGG - chr4_3:55110392-55110411 Msa0648650:intron 25.0%
! GTGATGCTAAATGTATATAT+TGG - chr4_3:55110435-55110454 Msa0648650:five_prime_UTR 25.0%
! ATGCTAAATGTATATATTGG+TGG - chr4_3:55110438-55110457 Msa0648650:five_prime_UTR 25.0%
!! TATATTGGTGGTTTATAGAA+AGG - chr4_3:55110450-55110469 Msa0648650:five_prime_UTR 25.0%
!! GTGTATTAATTTTATTCCCT+TGG - chr4_3:55110524-55110543 Msa0648650:five_prime_UTR 25.0%
!! TTAATTTTATTCCCTTGGTT+TGG - chr4_3:55110529-55110548 Msa0648650:five_prime_UTR 25.0%
!! ATACTGCTTTAAACTTTGAA+AGG + chr4_3:55110575-55110594 None:intergenic 25.0%
GAACTTTGTACAAGTATGAA+TGG + chr4_3:55108354-55108373 None:intergenic 30.0%
ACAATGAAGAAGAAAACAAG+TGG - chr4_3:55108596-55108615 Msa0648650:three_prime_UTR 30.0%
! AAGAAACTTGTTTGAAGAAG+TGG + chr4_3:55108637-55108656 None:intergenic 30.0%
TGAATGCAATATGTATTGCT+TGG - chr4_3:55108693-55108712 Msa0648650:three_prime_UTR 30.0%
TATTGCTTGGATTGTAACAA+TGG - chr4_3:55108706-55108725 Msa0648650:three_prime_UTR 30.0%
CAAACAACATAGAACAATTC+AGG - chr4_3:55108759-55108778 Msa0648650:three_prime_UTR 30.0%
TCAGTTAATTGTGTTTGGTT+TGG - chr4_3:55108802-55108821 Msa0648650:CDS 30.0%
! ATCAATGTTGATAGATAAGG+AGG - chr4_3:55109124-55109143 Msa0648650:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr4_3:55109149-55109168 Msa0648650:intron 30.0%
!! TTCTGAGATACAGAAATTTC+TGG - chr4_3:55109173-55109192 Msa0648650:intron 30.0%
CTTTGCACTGTTTATAACAT+AGG + chr4_3:55109217-55109236 None:intergenic 30.0%
GCGTTAAGTCAAAATAATCA+AGG + chr4_3:55109417-55109436 None:intergenic 30.0%
TTATACAGAAAAGAAGTAGG+AGG + chr4_3:55109701-55109720 None:intergenic 30.0%
! AGAAAAATGATGATGAGAGT+AGG - chr4_3:55109769-55109788 Msa0648650:intron 30.0%
TTTATTCTTCCTCAACTTCT+TGG + chr4_3:55109854-55109873 None:intergenic 30.0%
AAAATGTTGAGTCAGAAAGA+CGG - chr4_3:55109871-55109890 Msa0648650:intron 30.0%
TCAATGAATGGCATTAGTAA+TGG - chr4_3:55109910-55109929 Msa0648650:intron 30.0%
AAATATGACTTTAATGGCTG+AGG + chr4_3:55110172-55110191 None:intergenic 30.0%
TCAGCCATTAAAGTCATATT+TGG - chr4_3:55110171-55110190 Msa0648650:CDS 30.0%
!!! ACTACTTTTTGGTGTAAATC+GGG + chr4_3:55110234-55110253 None:intergenic 30.0%
!!! CACTACTTTTTGGTGTAAAT+CGG + chr4_3:55110235-55110254 None:intergenic 30.0%
TTTACTGCTCTACATTGTAT+AGG - chr4_3:55110331-55110350 Msa0648650:intron 30.0%
AGCAGGTAATAATATAAGTG+GGG - chr4_3:55110393-55110412 Msa0648650:intron 30.0%
TATAGCATTAGCATCTAGTT+TGG - chr4_3:55110478-55110497 Msa0648650:five_prime_UTR 30.0%
! CTTTAAACTTTGAAAGGACA+AGG + chr4_3:55110569-55110588 None:intergenic 30.0%
GCAGTATATGTAGTATAGTT+TGG - chr4_3:55110588-55110607 Msa0648650:five_prime_UTR 30.0%
GAACTTTGTACAAGTATGAA+TGG + chr4_3:55108354-55108373 None:intergenic 30.0%
ACAATGAAGAAGAAAACAAG+TGG - chr4_3:55108596-55108615 Msa0648650:three_prime_UTR 30.0%
! AAGAAACTTGTTTGAAGAAG+TGG + chr4_3:55108637-55108656 None:intergenic 30.0%
TGAATGCAATATGTATTGCT+TGG - chr4_3:55108693-55108712 Msa0648650:three_prime_UTR 30.0%
TATTGCTTGGATTGTAACAA+TGG - chr4_3:55108706-55108725 Msa0648650:three_prime_UTR 30.0%
CAAACAACATAGAACAATTC+AGG - chr4_3:55108759-55108778 Msa0648650:three_prime_UTR 30.0%
TCAGTTAATTGTGTTTGGTT+TGG - chr4_3:55108802-55108821 Msa0648650:CDS 30.0%
! ATCAATGTTGATAGATAAGG+AGG - chr4_3:55109124-55109143 Msa0648650:intron 30.0%
TTCATACCATGATGTGATAA+GGG - chr4_3:55109149-55109168 Msa0648650:intron 30.0%
!! TTCTGAGATACAGAAATTTC+TGG - chr4_3:55109173-55109192 Msa0648650:intron 30.0%
CTTTGCACTGTTTATAACAT+AGG + chr4_3:55109217-55109236 None:intergenic 30.0%
GCGTTAAGTCAAAATAATCA+AGG + chr4_3:55109417-55109436 None:intergenic 30.0%
TTATACAGAAAAGAAGTAGG+AGG + chr4_3:55109701-55109720 None:intergenic 30.0%
! AGAAAAATGATGATGAGAGT+AGG - chr4_3:55109769-55109788 Msa0648650:intron 30.0%
TTTATTCTTCCTCAACTTCT+TGG + chr4_3:55109854-55109873 None:intergenic 30.0%
AAAATGTTGAGTCAGAAAGA+CGG - chr4_3:55109871-55109890 Msa0648650:intron 30.0%
TCAATGAATGGCATTAGTAA+TGG - chr4_3:55109910-55109929 Msa0648650:intron 30.0%
AAATATGACTTTAATGGCTG+AGG + chr4_3:55110172-55110191 None:intergenic 30.0%
TCAGCCATTAAAGTCATATT+TGG - chr4_3:55110171-55110190 Msa0648650:CDS 30.0%
!!! ACTACTTTTTGGTGTAAATC+GGG + chr4_3:55110234-55110253 None:intergenic 30.0%
!!! CACTACTTTTTGGTGTAAAT+CGG + chr4_3:55110235-55110254 None:intergenic 30.0%
TTTACTGCTCTACATTGTAT+AGG - chr4_3:55110331-55110350 Msa0648650:intron 30.0%
AGCAGGTAATAATATAAGTG+GGG - chr4_3:55110393-55110412 Msa0648650:intron 30.0%
TATAGCATTAGCATCTAGTT+TGG - chr4_3:55110478-55110497 Msa0648650:five_prime_UTR 30.0%
! CTTTAAACTTTGAAAGGACA+AGG + chr4_3:55110569-55110588 None:intergenic 30.0%
GCAGTATATGTAGTATAGTT+TGG - chr4_3:55110588-55110607 Msa0648650:five_prime_UTR 30.0%
AAGTATGAATGGAGAGAGAA+GGG + chr4_3:55108343-55108362 None:intergenic 35.0%
!!! TTTTTTTGGAATTAGGGAGG+TGG - chr4_3:55108565-55108584 Msa0648650:three_prime_UTR 35.0%
AGCAAGACAAACAGAACAAA+GGG + chr4_3:55108734-55108753 None:intergenic 35.0%
AAGCAAGACAAACAGAACAA+AGG + chr4_3:55108735-55108754 None:intergenic 35.0%
! TGTTGATTGTTCTGCTTTGA+TGG - chr4_3:55109008-55109027 Msa0648650:CDS 35.0%
CTTCATACCATGATGTGATA+AGG - chr4_3:55109148-55109167 Msa0648650:intron 35.0%
!!! TTTTGACTTAACGCTATGGT+TGG - chr4_3:55109423-55109442 Msa0648650:intron 35.0%
CAATAGAAAACTTTCCACAC+AGG + chr4_3:55109517-55109536 None:intergenic 35.0%
TGATCCAAAAATGCAGTTTG+GGG + chr4_3:55109567-55109586 None:intergenic 35.0%
GTGATCCAAAAATGCAGTTT+GGG + chr4_3:55109568-55109587 None:intergenic 35.0%
TGTGATCCAAAAATGCAGTT+TGG + chr4_3:55109569-55109588 None:intergenic 35.0%
! AAAATGATGATGAGAGTAGG+TGG - chr4_3:55109772-55109791 Msa0648650:intron 35.0%
AAATGTTGAGTCAGAAAGAC+GGG - chr4_3:55109872-55109891 Msa0648650:intron 35.0%
! AATGGCATTAGTAATGGAAG+TGG - chr4_3:55109916-55109935 Msa0648650:intron 35.0%
TGAGTTACAGAACAGTTAAG+AGG - chr4_3:55109989-55110008 Msa0648650:intron 35.0%
GTGTTATCACTTTCTCAAAG+TGG - chr4_3:55110143-55110162 Msa0648650:CDS 35.0%
!! TTTCTGAGGACACTACTTTT+TGG + chr4_3:55110245-55110264 None:intergenic 35.0%
AAGTGGGGAATTTATTGTAC+TGG - chr4_3:55110408-55110427 Msa0648650:five_prime_UTR 35.0%
ATGTAGTATAGTTTGGCTAG+TGG - chr4_3:55110595-55110614 Msa0648650:five_prime_UTR 35.0%
AAGTATGAATGGAGAGAGAA+GGG + chr4_3:55108343-55108362 None:intergenic 35.0%
!!! TTTTTTTGGAATTAGGGAGG+TGG - chr4_3:55108565-55108584 Msa0648650:three_prime_UTR 35.0%
AGCAAGACAAACAGAACAAA+GGG + chr4_3:55108734-55108753 None:intergenic 35.0%
AAGCAAGACAAACAGAACAA+AGG + chr4_3:55108735-55108754 None:intergenic 35.0%
! TGTTGATTGTTCTGCTTTGA+TGG - chr4_3:55109008-55109027 Msa0648650:CDS 35.0%
CTTCATACCATGATGTGATA+AGG - chr4_3:55109148-55109167 Msa0648650:intron 35.0%
!!! TTTTGACTTAACGCTATGGT+TGG - chr4_3:55109423-55109442 Msa0648650:intron 35.0%
CAATAGAAAACTTTCCACAC+AGG + chr4_3:55109517-55109536 None:intergenic 35.0%
TGATCCAAAAATGCAGTTTG+GGG + chr4_3:55109567-55109586 None:intergenic 35.0%
GTGATCCAAAAATGCAGTTT+GGG + chr4_3:55109568-55109587 None:intergenic 35.0%
TGTGATCCAAAAATGCAGTT+TGG + chr4_3:55109569-55109588 None:intergenic 35.0%
! AAAATGATGATGAGAGTAGG+TGG - chr4_3:55109772-55109791 Msa0648650:intron 35.0%
AAATGTTGAGTCAGAAAGAC+GGG - chr4_3:55109872-55109891 Msa0648650:intron 35.0%
! AATGGCATTAGTAATGGAAG+TGG - chr4_3:55109916-55109935 Msa0648650:intron 35.0%
TGAGTTACAGAACAGTTAAG+AGG - chr4_3:55109989-55110008 Msa0648650:intron 35.0%
GTGTTATCACTTTCTCAAAG+TGG - chr4_3:55110143-55110162 Msa0648650:CDS 35.0%
!! TTTCTGAGGACACTACTTTT+TGG + chr4_3:55110245-55110264 None:intergenic 35.0%
AAGTGGGGAATTTATTGTAC+TGG - chr4_3:55110408-55110427 Msa0648650:five_prime_UTR 35.0%
ATGTAGTATAGTTTGGCTAG+TGG - chr4_3:55110595-55110614 Msa0648650:five_prime_UTR 35.0%
AAAGGTTGGAACTTGGAAGT+GGG + chr4_3:55108319-55108338 None:intergenic 40.0%
AAAAGGTTGGAACTTGGAAG+TGG + chr4_3:55108320-55108339 None:intergenic 40.0%
CAAGTATGAATGGAGAGAGA+AGG + chr4_3:55108344-55108363 None:intergenic 40.0%
GATTGTTCTGCTTTGATGGA+TGG - chr4_3:55109012-55109031 Msa0648650:CDS 40.0%
CAGAAACCCTTATCACATCA+TGG + chr4_3:55109158-55109177 None:intergenic 40.0%
! GAAATTTCTGGACATAGCAG+AGG - chr4_3:55109185-55109204 Msa0648650:intron 40.0%
TGAAGGAATCAAGAAGGCTA+CGG + chr4_3:55109311-55109330 None:intergenic 40.0%
AGAAGCTGAAGGAATCAAGA+AGG + chr4_3:55109317-55109336 None:intergenic 40.0%
!! TAACGCTATGGTTGGTAATC+TGG - chr4_3:55109431-55109450 Msa0648650:intron 40.0%
! TTGGTAATCTGGAGTTCAGT+CGG - chr4_3:55109442-55109461 Msa0648650:intron 40.0%
TCAGTCGGGTAAGTAAAGTT+TGG - chr4_3:55109457-55109476 Msa0648650:intron 40.0%
GATCCAAAAATGCAGTTTGG+GGG + chr4_3:55109566-55109585 None:intergenic 40.0%
ATTCTTCCTCAACTTCTTGG+AGG + chr4_3:55109851-55109870 None:intergenic 40.0%
GATGGTGAAGAGTCAATGAA+TGG - chr4_3:55109898-55109917 Msa0648650:intron 40.0%
GTTACAGAACAGTTAAGAGG+AGG - chr4_3:55109992-55110011 Msa0648650:intron 40.0%
AGAACAGTTAAGAGGAGGAA+AGG - chr4_3:55109997-55110016 Msa0648650:intron 40.0%
AATTCCACATAGAGCTCCAA+TGG - chr4_3:55110020-55110039 Msa0648650:intron 40.0%
ATTCCACATAGAGCTCCAAT+GGG - chr4_3:55110021-55110040 Msa0648650:intron 40.0%
ATGGTCATGTACCAAACCAA+GGG + chr4_3:55110543-55110562 None:intergenic 40.0%
AATGGTCATGTACCAAACCA+AGG + chr4_3:55110544-55110563 None:intergenic 40.0%
! CTTTGAAAGGACAAGGACAA+TGG + chr4_3:55110562-55110581 None:intergenic 40.0%
AAAGGTTGGAACTTGGAAGT+GGG + chr4_3:55108319-55108338 None:intergenic 40.0%
AAAAGGTTGGAACTTGGAAG+TGG + chr4_3:55108320-55108339 None:intergenic 40.0%
CAAGTATGAATGGAGAGAGA+AGG + chr4_3:55108344-55108363 None:intergenic 40.0%
GATTGTTCTGCTTTGATGGA+TGG - chr4_3:55109012-55109031 Msa0648650:CDS 40.0%
CAGAAACCCTTATCACATCA+TGG + chr4_3:55109158-55109177 None:intergenic 40.0%
! GAAATTTCTGGACATAGCAG+AGG - chr4_3:55109185-55109204 Msa0648650:intron 40.0%
TGAAGGAATCAAGAAGGCTA+CGG + chr4_3:55109311-55109330 None:intergenic 40.0%
AGAAGCTGAAGGAATCAAGA+AGG + chr4_3:55109317-55109336 None:intergenic 40.0%
!! TAACGCTATGGTTGGTAATC+TGG - chr4_3:55109431-55109450 Msa0648650:intron 40.0%
! TTGGTAATCTGGAGTTCAGT+CGG - chr4_3:55109442-55109461 Msa0648650:intron 40.0%
TCAGTCGGGTAAGTAAAGTT+TGG - chr4_3:55109457-55109476 Msa0648650:intron 40.0%
GATCCAAAAATGCAGTTTGG+GGG + chr4_3:55109566-55109585 None:intergenic 40.0%
ATTCTTCCTCAACTTCTTGG+AGG + chr4_3:55109851-55109870 None:intergenic 40.0%
GATGGTGAAGAGTCAATGAA+TGG - chr4_3:55109898-55109917 Msa0648650:intron 40.0%
GTTACAGAACAGTTAAGAGG+AGG - chr4_3:55109992-55110011 Msa0648650:intron 40.0%
AGAACAGTTAAGAGGAGGAA+AGG - chr4_3:55109997-55110016 Msa0648650:intron 40.0%
AATTCCACATAGAGCTCCAA+TGG - chr4_3:55110020-55110039 Msa0648650:intron 40.0%
ATTCCACATAGAGCTCCAAT+GGG - chr4_3:55110021-55110040 Msa0648650:intron 40.0%
ATGGTCATGTACCAAACCAA+GGG + chr4_3:55110543-55110562 None:intergenic 40.0%
AATGGTCATGTACCAAACCA+AGG + chr4_3:55110544-55110563 None:intergenic 40.0%
! CTTTGAAAGGACAAGGACAA+TGG + chr4_3:55110562-55110581 None:intergenic 40.0%
AAGGTTGGAACTTGGAAGTG+GGG + chr4_3:55108318-55108337 None:intergenic 45.0%
GAAGGGAAAAGGTTGGAACT+TGG + chr4_3:55108326-55108345 None:intergenic 45.0%
GAATGGAGAGAGAAGGGAAA+AGG + chr4_3:55108337-55108356 None:intergenic 45.0%
!!! TTTTGGAATTAGGGAGGTGG+AGG - chr4_3:55108568-55108587 Msa0648650:three_prime_UTR 45.0%
AAGAAAACAAGTGGCCACCA+TGG - chr4_3:55108605-55108624 Msa0648650:three_prime_UTR 45.0%
TGAAGAAGTGGTTGCAACCA+TGG + chr4_3:55108625-55108644 None:intergenic 45.0%
CACTCTTGTGTGAATCTGAG+TGG + chr4_3:55108675-55108694 None:intergenic 45.0%
! GTTCTGCTTTGATGGATGGA+TGG - chr4_3:55109016-55109035 Msa0648650:intron 45.0%
TGAATGAAAGGCCTCAACCT+AGG - chr4_3:55109247-55109266 Msa0648650:intron 45.0%
CTTCTGCTCTCTTGGTTGTA+AGG - chr4_3:55109332-55109351 Msa0648650:intron 45.0%
! TGGTAATCTGGAGTTCAGTC+GGG - chr4_3:55109443-55109462 Msa0648650:intron 45.0%
TAGAAGCTGATTGACCTGTG+TGG - chr4_3:55109500-55109519 Msa0648650:intron 45.0%
! GATCCCCCAAACTGCATTTT+TGG - chr4_3:55109560-55109579 Msa0648650:CDS 45.0%
TTGGAACCTCCAAGAAGTTG+AGG - chr4_3:55109842-55109861 Msa0648650:intron 45.0%
GTTCTGTAACTCACTGCTGT+TGG + chr4_3:55109982-55110001 None:intergenic 45.0%
TTCCACATAGAGCTCCAATG+GGG - chr4_3:55110022-55110041 Msa0648650:intron 45.0%
ATAATGATTCCTCCCCCCAT+TGG + chr4_3:55110039-55110058 None:intergenic 45.0%
AGAGCAGTAAATCCCTACAC+CGG + chr4_3:55110322-55110341 None:intergenic 45.0%
!! TTGGCTAGTGGACTAGTTAG+TGG - chr4_3:55110607-55110626 Msa0648650:five_prime_UTR 45.0%
AAGGTTGGAACTTGGAAGTG+GGG + chr4_3:55108318-55108337 None:intergenic 45.0%
GAAGGGAAAAGGTTGGAACT+TGG + chr4_3:55108326-55108345 None:intergenic 45.0%
GAATGGAGAGAGAAGGGAAA+AGG + chr4_3:55108337-55108356 None:intergenic 45.0%
!!! TTTTGGAATTAGGGAGGTGG+AGG - chr4_3:55108568-55108587 Msa0648650:three_prime_UTR 45.0%
AAGAAAACAAGTGGCCACCA+TGG - chr4_3:55108605-55108624 Msa0648650:three_prime_UTR 45.0%
TGAAGAAGTGGTTGCAACCA+TGG + chr4_3:55108625-55108644 None:intergenic 45.0%
CACTCTTGTGTGAATCTGAG+TGG + chr4_3:55108675-55108694 None:intergenic 45.0%
! GTTCTGCTTTGATGGATGGA+TGG - chr4_3:55109016-55109035 Msa0648650:intron 45.0%
TGAATGAAAGGCCTCAACCT+AGG - chr4_3:55109247-55109266 Msa0648650:intron 45.0%
CTTCTGCTCTCTTGGTTGTA+AGG - chr4_3:55109332-55109351 Msa0648650:intron 45.0%
! TGGTAATCTGGAGTTCAGTC+GGG - chr4_3:55109443-55109462 Msa0648650:intron 45.0%
TAGAAGCTGATTGACCTGTG+TGG - chr4_3:55109500-55109519 Msa0648650:intron 45.0%
! GATCCCCCAAACTGCATTTT+TGG - chr4_3:55109560-55109579 Msa0648650:CDS 45.0%
TTGGAACCTCCAAGAAGTTG+AGG - chr4_3:55109842-55109861 Msa0648650:intron 45.0%
GTTCTGTAACTCACTGCTGT+TGG + chr4_3:55109982-55110001 None:intergenic 45.0%
TTCCACATAGAGCTCCAATG+GGG - chr4_3:55110022-55110041 Msa0648650:intron 45.0%
ATAATGATTCCTCCCCCCAT+TGG + chr4_3:55110039-55110058 None:intergenic 45.0%
AGAGCAGTAAATCCCTACAC+CGG + chr4_3:55110322-55110341 None:intergenic 45.0%
!!! TTTGATTTTTTTTTTTTTTT+TGG - chr4_3:55108551-55108570 Msa0648650:three_prime_UTR 5.0%
!!! ATTTGATAATAAAATAATTT+TGG - chr4_3:55108859-55108878 Msa0648650:CDS 5.0%
!!! ATTTTTTTTAATTATTGAAT+TGG + chr4_3:55108939-55108958 None:intergenic 5.0%
!!! GATAATTTTTATTTAAATTA+TGG - chr4_3:55109038-55109057 Msa0648650:intron 5.0%
!!! TTTGATTTTTTTTTTTTTTT+TGG - chr4_3:55108551-55108570 Msa0648650:three_prime_UTR 5.0%
!!! ATTTGATAATAAAATAATTT+TGG - chr4_3:55108859-55108878 Msa0648650:CDS 5.0%
!!! ATTTTTTTTAATTATTGAAT+TGG + chr4_3:55108939-55108958 None:intergenic 5.0%
!!! GATAATTTTTATTTAAATTA+TGG - chr4_3:55109038-55109057 Msa0648650:intron 5.0%
!! TTGTAGTGGCGGGTGATGAA+GGG + chr4_3:55108287-55108306 None:intergenic 50.0%
!! TTTGTAGTGGCGGGTGATGA+AGG + chr4_3:55108288-55108307 None:intergenic 50.0%
! GGCTATGCTTTTGTAGTGGC+GGG + chr4_3:55108297-55108316 None:intergenic 50.0%
! GGGCTATGCTTTTGTAGTGG+CGG + chr4_3:55108298-55108317 None:intergenic 50.0%
! GTGGGGCTATGCTTTTGTAG+TGG + chr4_3:55108301-55108320 None:intergenic 50.0%
GGAGAGAGAAGGGAAAAGGT+TGG + chr4_3:55108333-55108352 None:intergenic 50.0%
AGAAGTGGTTGCAACCATGG+TGG + chr4_3:55108622-55108641 None:intergenic 50.0%
CTCAACCTAGGCCTGGAAAA+GGG - chr4_3:55109259-55109278 Msa0648650:intron 50.0%
TCAACCTAGGCCTGGAAAAG+GGG - chr4_3:55109260-55109279 Msa0648650:intron 50.0%
TCCTTCAGCTTCTGCTCTCT+TGG - chr4_3:55109324-55109343 Msa0648650:intron 50.0%
ACCAAGAGAGCAGAAGCTGA+AGG + chr4_3:55109328-55109347 None:intergenic 50.0%
AGTCAGAAAGACGGGTCTGA+TGG - chr4_3:55109880-55109899 Msa0648650:intron 50.0%
TAACTCACTGCTGTTGGAGG+TGG + chr4_3:55109976-55109995 None:intergenic 50.0%
CTGTAACTCACTGCTGTTGG+AGG + chr4_3:55109979-55109998 None:intergenic 50.0%
TCCACATAGAGCTCCAATGG+GGG - chr4_3:55110023-55110042 Msa0648650:intron 50.0%
GTCTTTACAAGTTCGCGCAG+AGG - chr4_3:55110205-55110224 Msa0648650:CDS 50.0%
!! TTGTAGTGGCGGGTGATGAA+GGG + chr4_3:55108287-55108306 None:intergenic 50.0%
!! TTTGTAGTGGCGGGTGATGA+AGG + chr4_3:55108288-55108307 None:intergenic 50.0%
! GGCTATGCTTTTGTAGTGGC+GGG + chr4_3:55108297-55108316 None:intergenic 50.0%
! GGGCTATGCTTTTGTAGTGG+CGG + chr4_3:55108298-55108317 None:intergenic 50.0%
! GTGGGGCTATGCTTTTGTAG+TGG + chr4_3:55108301-55108320 None:intergenic 50.0%
GGAGAGAGAAGGGAAAAGGT+TGG + chr4_3:55108333-55108352 None:intergenic 50.0%
AGAAGTGGTTGCAACCATGG+TGG + chr4_3:55108622-55108641 None:intergenic 50.0%
CTCAACCTAGGCCTGGAAAA+GGG - chr4_3:55109259-55109278 Msa0648650:intron 50.0%
TCAACCTAGGCCTGGAAAAG+GGG - chr4_3:55109260-55109279 Msa0648650:intron 50.0%
TCCTTCAGCTTCTGCTCTCT+TGG - chr4_3:55109324-55109343 Msa0648650:intron 50.0%
ACCAAGAGAGCAGAAGCTGA+AGG + chr4_3:55109328-55109347 None:intergenic 50.0%
AGTCAGAAAGACGGGTCTGA+TGG - chr4_3:55109880-55109899 Msa0648650:intron 50.0%
TAACTCACTGCTGTTGGAGG+TGG + chr4_3:55109976-55109995 None:intergenic 50.0%
CTGTAACTCACTGCTGTTGG+AGG + chr4_3:55109979-55109998 None:intergenic 50.0%
TCCACATAGAGCTCCAATGG+GGG - chr4_3:55110023-55110042 Msa0648650:intron 50.0%
GTCTTTACAAGTTCGCGCAG+AGG - chr4_3:55110205-55110224 Msa0648650:CDS 50.0%
TGGAATTAGGGAGGTGGAGG+AGG - chr4_3:55108571-55108590 Msa0648650:three_prime_UTR 55.0%
! CCTTTTCCAGGCCTAGGTTG+AGG + chr4_3:55109261-55109280 None:intergenic 55.0%
CCTCAACCTAGGCCTGGAAA+AGG - chr4_3:55109258-55109277 Msa0648650:intron 55.0%
!!! GTGTTGGTGACCCCTTTTCC+AGG + chr4_3:55109273-55109292 None:intergenic 55.0%
GTCACAGACTTGGCAGGTGT+TGG + chr4_3:55109289-55109308 None:intergenic 55.0%
GAAGGCTACGGTCACAGACT+TGG + chr4_3:55109299-55109318 None:intergenic 55.0%
! GCTGTTGGAGGTGGTGTTGA+AGG + chr4_3:55109967-55109986 None:intergenic 55.0%
CCACATAGAGCTCCAATGGG+GGG - chr4_3:55110024-55110043 Msa0648650:intron 55.0%
AAATCCCTACACCGGCCTCA+GGG + chr4_3:55110314-55110333 None:intergenic 55.0%
TAAATCCCTACACCGGCCTC+AGG + chr4_3:55110315-55110334 None:intergenic 55.0%
TGGAATTAGGGAGGTGGAGG+AGG - chr4_3:55108571-55108590 Msa0648650:three_prime_UTR 55.0%
! CCTTTTCCAGGCCTAGGTTG+AGG + chr4_3:55109261-55109280 None:intergenic 55.0%
CCTCAACCTAGGCCTGGAAA+AGG - chr4_3:55109258-55109277 Msa0648650:intron 55.0%
!!! GTGTTGGTGACCCCTTTTCC+AGG + chr4_3:55109273-55109292 None:intergenic 55.0%
GTCACAGACTTGGCAGGTGT+TGG + chr4_3:55109289-55109308 None:intergenic 55.0%
GAAGGCTACGGTCACAGACT+TGG + chr4_3:55109299-55109318 None:intergenic 55.0%
! GCTGTTGGAGGTGGTGTTGA+AGG + chr4_3:55109967-55109986 None:intergenic 55.0%
CCACATAGAGCTCCAATGGG+GGG - chr4_3:55110024-55110043 Msa0648650:intron 55.0%
AAATCCCTACACCGGCCTCA+GGG + chr4_3:55110314-55110333 None:intergenic 55.0%
TAAATCCCTACACCGGCCTC+AGG + chr4_3:55110315-55110334 None:intergenic 55.0%
GAAAGGCCTCAACCTAGGCC+TGG - chr4_3:55109252-55109271 Msa0648650:intron 60.0%
! GTGACCCCTTTTCCAGGCCT+AGG + chr4_3:55109267-55109286 None:intergenic 60.0%
GCTACGGTCACAGACTTGGC+AGG + chr4_3:55109295-55109314 None:intergenic 60.0%
CCCCCCATTGGAGCTCTATG+TGG + chr4_3:55110027-55110046 None:intergenic 60.0%
CATAGAGCTCCAATGGGGGG+AGG - chr4_3:55110027-55110046 Msa0648650:intron 60.0%
!! CACCAGAGCCTTGTTCCCTG+AGG - chr4_3:55110296-55110315 Msa0648650:intron 60.0%
!! AGAGCCTTGTTCCCTGAGGC+CGG - chr4_3:55110300-55110319 Msa0648650:intron 60.0%
TACACCGGCCTCAGGGAACA+AGG + chr4_3:55110307-55110326 None:intergenic 60.0%
TTGTTCCCTGAGGCCGGTGT+AGG - chr4_3:55110306-55110325 Msa0648650:intron 60.0%
TGTTCCCTGAGGCCGGTGTA+GGG - chr4_3:55110307-55110326 Msa0648650:intron 60.0%
GAAAGGCCTCAACCTAGGCC+TGG - chr4_3:55109252-55109271 Msa0648650:intron 60.0%
! GTGACCCCTTTTCCAGGCCT+AGG + chr4_3:55109267-55109286 None:intergenic 60.0%
GCTACGGTCACAGACTTGGC+AGG + chr4_3:55109295-55109314 None:intergenic 60.0%
CCCCCCATTGGAGCTCTATG+TGG + chr4_3:55110027-55110046 None:intergenic 60.0%
CATAGAGCTCCAATGGGGGG+AGG - chr4_3:55110027-55110046 Msa0648650:intron 60.0%
!! CACCAGAGCCTTGTTCCCTG+AGG - chr4_3:55110296-55110315 Msa0648650:intron 60.0%
!! AGAGCCTTGTTCCCTGAGGC+CGG - chr4_3:55110300-55110319 Msa0648650:intron 60.0%
TACACCGGCCTCAGGGAACA+AGG + chr4_3:55110307-55110326 None:intergenic 60.0%
TTGTTCCCTGAGGCCGGTGT+AGG - chr4_3:55110306-55110325 Msa0648650:intron 60.0%
TGTTCCCTGAGGCCGGTGTA+GGG - chr4_3:55110307-55110326 Msa0648650:intron 60.0%
GGCCTCAGGGAACAAGGCTC+TGG + chr4_3:55110301-55110320 None:intergenic 65.0%
GGCCTCAGGGAACAAGGCTC+TGG + chr4_3:55110301-55110320 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 55108241 55110629 55108241 ID=Msa0648650;Name=Msa0648650
chr4_3 mRNA 55108241 55110629 55108241 ID=Msa0648650-mRNA-1;Parent=Msa0648650;Name=Msa0648650-mRNA-1;_AED=0.04;_eAED=0.04;_QI=230|1|1|1|1|1|4|561|216
chr4_3 exon 55108241 55109032 55108241 ID=Msa0648650-mRNA-1:exon:14057;Parent=Msa0648650-mRNA-1
chr4_3 exon 55109517 55109732 55109517 ID=Msa0648650-mRNA-1:exon:14056;Parent=Msa0648650-mRNA-1
chr4_3 exon 55110090 55110290 55110090 ID=Msa0648650-mRNA-1:exon:14055;Parent=Msa0648650-mRNA-1
chr4_3 exon 55110397 55110629 55110397 ID=Msa0648650-mRNA-1:exon:14054;Parent=Msa0648650-mRNA-1
chr4_3 five_prime_UTR 55110400 55110629 55110400 ID=Msa0648650-mRNA-1:five_prime_utr;Parent=Msa0648650-mRNA-1
chr4_3 CDS 55110397 55110399 55110397 ID=Msa0648650-mRNA-1:cds;Parent=Msa0648650-mRNA-1
chr4_3 CDS 55110090 55110290 55110090 ID=Msa0648650-mRNA-1:cds;Parent=Msa0648650-mRNA-1
chr4_3 CDS 55109517 55109732 55109517 ID=Msa0648650-mRNA-1:cds;Parent=Msa0648650-mRNA-1
chr4_3 CDS 55108802 55109032 55108802 ID=Msa0648650-mRNA-1:cds;Parent=Msa0648650-mRNA-1
chr4_3 three_prime_UTR 55108241 55108801 55108241 ID=Msa0648650-mRNA-1:three_prime_utr;Parent=Msa0648650-mRNA-1
Gene Sequence

>Msa0648650

ATGGGAGGTGGAGGAGGTAACAATGAAGAAGAAAACAAGTGGCCACCATGGTTGCAACCACTTCTTCAAACAAGTTTCTTTGTTCAATGCAAAGTCCACTCAGATTCACACAAGAGTGAATGCAATATGTATTGCTTGGATTGTAACAATGGTGCCCTTTGTTCTGTTTGTCTTGCTTCTCACAAACAACATAGAACAATTCAGATAAGGAGGTCTTCATACCATGATGTGATAAGGGTTTCTGAGATACAGAAATTTCTGGACATAGCAGAGGTTCAAACCTATGTTATAAACAGTGCAAAGATTGTGTTTTTGAATGAAAGGCCTCAACCTAGGCCTGGAAAAGGGGTCACCAACACCTGCCAAGTCTGTGACCGTAGCCTTCTTGATTCCTTCAGCTTCTGCTCTCTTGGTTGTAAGATTGTTGGAACCTCCAAGAAGTTGAGGAAGAATAAAATGTTGAGTCAGAAAGACGGGTCTGATGGTGAAGAGTCAATGAATGGCATTAGTAATGGAAGTGGCAGAAACAGAAGTCATAGTTTTACACCTTCAACACCACCTCCAACAGCAGTGAGTTACAGAACAGTTAAGAGGAGGAAAGGAATTCCACATAGAGCTCCAATGGGGGGAGGAATCATTATAGAATTCTAA
Protein sequence

>Msa0648650

MGGGGGNNEEENKWPPWLQPLLQTSFFVQCKVHSDSHKSECNMYCLDCNNGALCSVCLASHKQHRTIQIRRSSYHDVIRVSEIQKFLDIAEVQTYVINSAKIVFLNERPQPRPGKGVTNTCQVCDRSLLDSFSFCSLGCKIVGTSKKLRKNKMLSQKDGSDGEESMNGISNGSGRNRSHSFTPSTPPPTAVSYRTVKRRKGIPHRAPMGGGIIIEF*