Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0650170 | XP_013456734.1 | 94.631 | 149 | 3 | 1 | 1 | 149 | 1 | 144 | 2.32e-95 | 281 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0650170 | sp|Q9FIU6|ORRM2_ARATH | 60.135 | 148 | 51 | 2 | 3 | 148 | 9 | 150 | 8.02e-52 | 164 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0650170 | I3SW70 | 94.631 | 149 | 3 | 1 | 1 | 149 | 1 | 144 | 1.11e-95 | 281 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0650170 | Msa0692140 | 0.832958 | 7.021750e-56 | -8.615850e-47 |
Msa0555840 | Msa0650170 | 0.801649 | 8.148903e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0650170 | MtrunA17_Chr4g0042161 | 94.631 | 149 | 3 | 1 | 1 | 149 | 1 | 144 | 2.14e-99 | 281 |
Msa0650170 | MtrunA17_Chr4g0042151 | 69.231 | 130 | 33 | 2 | 6 | 135 | 1 | 123 | 8.22e-59 | 180 |
Msa0650170 | MtrunA17_Chr7g0263001 | 58.025 | 81 | 34 | 0 | 57 | 137 | 36 | 116 | 1.72e-28 | 102 |
Msa0650170 | MtrunA17_Chr6g0481071 | 50.000 | 96 | 48 | 0 | 40 | 135 | 79 | 174 | 1.44e-26 | 98.6 |
Msa0650170 | MtrunA17_Chr7g0266751 | 50.649 | 77 | 38 | 0 | 58 | 134 | 34 | 110 | 4.82e-22 | 85.5 |
Msa0650170 | MtrunA17_Chr4g0061451 | 41.837 | 98 | 52 | 1 | 44 | 136 | 25 | 122 | 1.51e-21 | 87.4 |
Msa0650170 | MtrunA17_Chr3g0086861 | 46.512 | 86 | 46 | 0 | 54 | 139 | 42 | 127 | 4.31e-21 | 88.2 |
Msa0650170 | MtrunA17_Chr1g0198431 | 45.000 | 80 | 44 | 0 | 58 | 137 | 194 | 273 | 1.91e-20 | 84.7 |
Msa0650170 | MtrunA17_Chr7g0219021 | 42.353 | 85 | 49 | 0 | 55 | 139 | 39 | 123 | 4.03e-19 | 80.9 |
Msa0650170 | MtrunA17_Chr3g0121631 | 40.594 | 101 | 57 | 2 | 37 | 137 | 19 | 116 | 3.76e-18 | 75.9 |
Msa0650170 | MtrunA17_Chr7g0219031 | 44.595 | 74 | 41 | 0 | 54 | 127 | 38 | 111 | 1.86e-16 | 70.5 |
Msa0650170 | MtrunA17_Chr3g0088511 | 39.326 | 89 | 50 | 1 | 55 | 143 | 31 | 115 | 2.20e-15 | 68.2 |
Msa0650170 | MtrunA17_Chr4g0018581 | 39.796 | 98 | 59 | 0 | 35 | 132 | 430 | 527 | 5.00e-15 | 71.2 |
Msa0650170 | MtrunA17_Chr4g0035001 | 40.541 | 74 | 44 | 0 | 51 | 124 | 1 | 74 | 1.87e-14 | 66.6 |
Msa0650170 | MtrunA17_Chr4g0035051 | 38.356 | 73 | 45 | 0 | 52 | 124 | 4 | 76 | 2.74e-14 | 65.1 |
Msa0650170 | MtrunA17_Chr4g0050781 | 41.860 | 86 | 44 | 2 | 53 | 135 | 4 | 86 | 8.28e-14 | 65.9 |
Msa0650170 | MtrunA17_Chr2g0327921 | 38.750 | 80 | 49 | 0 | 56 | 135 | 7 | 86 | 1.04e-13 | 62.8 |
Msa0650170 | MtrunA17_Chr2g0278661 | 41.026 | 78 | 46 | 0 | 58 | 135 | 9 | 86 | 1.41e-13 | 65.9 |
Msa0650170 | MtrunA17_Chr3g0119311 | 41.463 | 82 | 46 | 2 | 56 | 136 | 36 | 116 | 1.58e-12 | 60.8 |
Msa0650170 | MtrunA17_Chr4g0035031 | 42.424 | 66 | 38 | 0 | 59 | 124 | 11 | 76 | 1.76e-12 | 62.0 |
Msa0650170 | MtrunA17_Chr4g0031091 | 28.182 | 110 | 71 | 1 | 33 | 134 | 2 | 111 | 3.57e-12 | 59.3 |
Msa0650170 | MtrunA17_Chr3g0116631 | 34.951 | 103 | 63 | 1 | 41 | 139 | 187 | 289 | 3.80e-12 | 62.4 |
Msa0650170 | MtrunA17_Chr7g0276531 | 41.667 | 60 | 35 | 0 | 56 | 115 | 18 | 77 | 5.81e-12 | 61.2 |
Msa0650170 | MtrunA17_Chr3g0144311 | 39.080 | 87 | 47 | 2 | 56 | 138 | 29 | 113 | 6.43e-12 | 61.6 |
Msa0650170 | MtrunA17_Chr8g0346011 | 43.478 | 69 | 35 | 1 | 56 | 120 | 37 | 105 | 8.88e-12 | 61.2 |
Msa0650170 | MtrunA17_Chr8g0349601 | 32.787 | 122 | 72 | 2 | 22 | 135 | 159 | 278 | 1.89e-11 | 60.1 |
Msa0650170 | MtrunA17_Chr7g0268551 | 35.417 | 96 | 54 | 1 | 54 | 149 | 346 | 433 | 2.84e-11 | 60.1 |
Msa0650170 | MtrunA17_Chr2g0290191 | 39.744 | 78 | 45 | 1 | 58 | 135 | 6 | 81 | 3.90e-11 | 59.7 |
Msa0650170 | MtrunA17_Chr4g0050441 | 32.609 | 92 | 57 | 1 | 42 | 133 | 7 | 93 | 4.14e-11 | 59.3 |
Msa0650170 | MtrunA17_Chr8g0393061 | 35.294 | 102 | 55 | 1 | 45 | 135 | 189 | 290 | 4.45e-11 | 59.3 |
Msa0650170 | MtrunA17_Chr1g0168601 | 41.975 | 81 | 47 | 0 | 44 | 124 | 141 | 221 | 4.54e-11 | 58.9 |
Msa0650170 | MtrunA17_Chr5g0429941 | 32.609 | 92 | 57 | 1 | 42 | 133 | 7 | 93 | 7.39e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0650170 | AT5G54580.1 | 60.135 | 148 | 51 | 2 | 3 | 148 | 9 | 150 | 8.15e-53 | 164 |
Msa0650170 | AT2G37510.1 | 63.014 | 73 | 27 | 0 | 58 | 130 | 36 | 108 | 2.73e-27 | 99.4 |
Msa0650170 | AT1G73530.1 | 50.000 | 88 | 44 | 0 | 54 | 141 | 75 | 162 | 1.76e-25 | 95.9 |
Msa0650170 | AT2G37510.2 | 46.939 | 98 | 27 | 1 | 58 | 130 | 36 | 133 | 2.17e-21 | 85.1 |
Msa0650170 | AT5G06210.1 | 44.706 | 85 | 47 | 0 | 55 | 139 | 33 | 117 | 2.37e-19 | 79.3 |
Msa0650170 | AT3G20930.1 | 40.244 | 82 | 49 | 0 | 55 | 136 | 281 | 362 | 3.35e-18 | 80.1 |
Msa0650170 | AT5G61030.2 | 43.902 | 82 | 46 | 0 | 54 | 135 | 38 | 119 | 7.92e-18 | 78.6 |
Msa0650170 | AT5G61030.1 | 43.902 | 82 | 46 | 0 | 54 | 135 | 38 | 119 | 7.92e-18 | 78.6 |
Msa0650170 | AT3G46020.1 | 36.264 | 91 | 58 | 0 | 55 | 145 | 6 | 96 | 1.80e-16 | 70.5 |
Msa0650170 | AT1G18630.1 | 48.611 | 72 | 37 | 0 | 56 | 127 | 36 | 107 | 2.23e-16 | 71.6 |
Msa0650170 | AT4G13850.3 | 47.561 | 82 | 43 | 0 | 55 | 136 | 34 | 115 | 2.38e-16 | 71.6 |
Msa0650170 | AT4G13850.4 | 44.330 | 97 | 51 | 1 | 40 | 136 | 22 | 115 | 2.41e-16 | 70.9 |
Msa0650170 | AT3G23830.2 | 41.584 | 101 | 56 | 1 | 37 | 137 | 19 | 116 | 2.64e-16 | 71.2 |
Msa0650170 | AT3G23830.1 | 41.584 | 101 | 56 | 1 | 37 | 137 | 19 | 116 | 2.64e-16 | 71.2 |
Msa0650170 | AT4G13850.2 | 47.561 | 82 | 43 | 0 | 55 | 136 | 34 | 115 | 2.90e-16 | 71.6 |
Msa0650170 | AT4G13850.1 | 47.561 | 82 | 43 | 0 | 55 | 136 | 34 | 115 | 3.24e-16 | 71.6 |
Msa0650170 | AT3G20930.2 | 37.931 | 87 | 49 | 1 | 55 | 136 | 281 | 367 | 4.94e-16 | 73.9 |
Msa0650170 | AT4G39260.3 | 39.326 | 89 | 54 | 0 | 51 | 139 | 1 | 89 | 1.44e-15 | 68.2 |
Msa0650170 | AT2G43370.2 | 35.417 | 96 | 62 | 0 | 44 | 139 | 52 | 147 | 1.70e-15 | 70.5 |
Msa0650170 | AT5G59865.1 | 43.750 | 80 | 45 | 0 | 56 | 135 | 26 | 105 | 2.31e-15 | 68.2 |
Msa0650170 | AT2G43370.1 | 35.417 | 96 | 62 | 0 | 44 | 139 | 52 | 147 | 1.39e-14 | 69.7 |
Msa0650170 | AT1G74230.1 | 43.590 | 78 | 43 | 1 | 55 | 132 | 33 | 109 | 3.44e-14 | 68.2 |
Msa0650170 | AT4G13860.1 | 47.143 | 70 | 37 | 0 | 55 | 124 | 2 | 71 | 3.92e-14 | 64.3 |
Msa0650170 | AT4G39260.2 | 41.558 | 77 | 45 | 0 | 51 | 127 | 1 | 77 | 7.27e-14 | 64.7 |
Msa0650170 | AT5G47320.1 | 38.144 | 97 | 57 | 1 | 40 | 136 | 18 | 111 | 1.41e-13 | 65.5 |
Msa0650170 | AT5G51300.1 | 34.234 | 111 | 68 | 2 | 22 | 132 | 451 | 556 | 1.48e-13 | 67.4 |
Msa0650170 | AT5G51300.2 | 34.234 | 111 | 68 | 2 | 22 | 132 | 451 | 556 | 1.48e-13 | 67.4 |
Msa0650170 | AT5G51300.3 | 34.234 | 111 | 68 | 2 | 22 | 132 | 451 | 556 | 1.48e-13 | 67.4 |
Msa0650170 | AT4G39260.1 | 41.558 | 77 | 45 | 0 | 51 | 127 | 1 | 77 | 1.77e-13 | 64.7 |
Msa0650170 | AT4G24770.1 | 36.000 | 100 | 64 | 0 | 38 | 137 | 226 | 325 | 3.32e-13 | 65.9 |
Msa0650170 | AT4G24770.2 | 36.000 | 100 | 64 | 0 | 38 | 137 | 226 | 325 | 3.32e-13 | 65.9 |
Msa0650170 | AT2G46780.1 | 39.535 | 86 | 48 | 1 | 56 | 137 | 22 | 107 | 3.84e-13 | 65.9 |
Msa0650170 | AT2G46780.2 | 39.535 | 86 | 48 | 1 | 56 | 137 | 22 | 107 | 3.84e-13 | 65.9 |
Msa0650170 | AT3G08000.1 | 40.698 | 86 | 51 | 0 | 57 | 142 | 42 | 127 | 5.69e-13 | 62.8 |
Msa0650170 | AT3G26420.1 | 36.170 | 94 | 59 | 1 | 53 | 146 | 4 | 96 | 6.57e-13 | 64.3 |
Msa0650170 | AT2G27330.1 | 29.787 | 94 | 64 | 1 | 55 | 146 | 20 | 113 | 1.43e-12 | 60.8 |
Msa0650170 | AT1G76460.1 | 39.535 | 86 | 46 | 2 | 56 | 137 | 24 | 107 | 2.73e-12 | 63.2 |
Msa0650170 | AT1G22330.1 | 36.471 | 85 | 48 | 2 | 56 | 136 | 17 | 99 | 2.83e-12 | 63.2 |
Msa0650170 | AT3G53460.1 | 39.759 | 83 | 50 | 0 | 58 | 140 | 259 | 341 | 4.13e-12 | 62.8 |
Msa0650170 | AT3G53460.3 | 39.759 | 83 | 50 | 0 | 58 | 140 | 259 | 341 | 4.13e-12 | 62.8 |
Msa0650170 | AT3G53460.2 | 39.759 | 83 | 50 | 0 | 58 | 140 | 259 | 341 | 4.13e-12 | 62.8 |
Msa0650170 | AT3G53460.4 | 39.759 | 83 | 50 | 0 | 58 | 140 | 280 | 362 | 4.22e-12 | 62.8 |
Msa0650170 | AT1G07350.3 | 38.636 | 88 | 53 | 1 | 44 | 130 | 32 | 119 | 6.04e-12 | 59.7 |
Msa0650170 | AT1G07350.2 | 38.636 | 88 | 53 | 1 | 44 | 130 | 32 | 119 | 6.04e-12 | 59.7 |
Msa0650170 | AT2G37220.1 | 41.250 | 80 | 47 | 0 | 58 | 137 | 206 | 285 | 6.78e-12 | 62.0 |
Msa0650170 | AT1G07350.1 | 38.750 | 80 | 49 | 0 | 53 | 132 | 72 | 151 | 7.16e-12 | 62.4 |
Msa0650170 | AT2G23350.1 | 42.466 | 73 | 41 | 1 | 57 | 129 | 135 | 206 | 8.01e-12 | 62.4 |
Msa0650170 | AT3G11400.2 | 33.051 | 118 | 63 | 2 | 35 | 136 | 203 | 320 | 8.77e-12 | 61.6 |
Msa0650170 | AT1G07350.5 | 38.961 | 77 | 47 | 0 | 54 | 130 | 73 | 149 | 9.10e-12 | 59.7 |
Msa0650170 | AT3G11400.1 | 33.051 | 118 | 63 | 2 | 35 | 136 | 176 | 293 | 1.05e-11 | 61.2 |
Msa0650170 | AT4G34110.1 | 29.412 | 136 | 82 | 4 | 4 | 128 | 63 | 195 | 1.46e-11 | 61.6 |
Msa0650170 | AT4G34110.1 | 37.838 | 74 | 43 | 2 | 56 | 127 | 215 | 287 | 7.93e-11 | 59.3 |
Msa0650170 | AT5G64200.2 | 35.065 | 77 | 50 | 0 | 57 | 133 | 17 | 93 | 1.50e-11 | 60.8 |
Msa0650170 | AT5G64200.1 | 35.065 | 77 | 50 | 0 | 57 | 133 | 17 | 93 | 1.50e-11 | 60.8 |
Msa0650170 | AT1G60000.1 | 32.203 | 118 | 79 | 1 | 19 | 135 | 139 | 256 | 2.64e-11 | 60.1 |
Msa0650170 | AT5G19030.1 | 31.579 | 76 | 52 | 0 | 59 | 134 | 80 | 155 | 2.85e-11 | 58.9 |
Msa0650170 | AT5G47620.4 | 36.047 | 86 | 52 | 1 | 51 | 133 | 1 | 86 | 3.31e-11 | 60.5 |
Msa0650170 | AT5G53720.1 | 41.558 | 77 | 38 | 2 | 51 | 120 | 1 | 77 | 3.45e-11 | 57.0 |
Msa0650170 | AT2G21660.2 | 39.394 | 66 | 40 | 0 | 59 | 124 | 11 | 76 | 4.02e-11 | 58.2 |
Msa0650170 | AT2G21660.1 | 39.394 | 66 | 40 | 0 | 59 | 124 | 11 | 76 | 5.32e-11 | 58.2 |
Msa0650170 | AT4G20030.1 | 28.070 | 114 | 69 | 2 | 32 | 134 | 7 | 118 | 6.51e-11 | 57.4 |
Msa0650170 | AT1G22910.1 | 47.273 | 55 | 29 | 0 | 56 | 110 | 13 | 67 | 7.88e-11 | 58.5 |
Msa0650170 | AT1G22910.2 | 47.273 | 55 | 29 | 0 | 56 | 110 | 13 | 67 | 8.15e-11 | 58.5 |
Msa0650170 | AT4G35785.2 | 36.364 | 88 | 56 | 0 | 50 | 137 | 66 | 153 | 8.61e-11 | 58.5 |
Msa0650170 | AT4G26650.1 | 35.870 | 92 | 57 | 1 | 44 | 135 | 3 | 92 | 9.37e-11 | 58.9 |
Msa0650170 | AT1G07350.6 | 37.363 | 91 | 56 | 1 | 44 | 133 | 32 | 122 | 9.61e-11 | 57.8 |
Find 80 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATATGCCTGGAACCTTTAT+TGG | 0.155390 | 4_3:-56952453 | Msa0650170:three_prime_UTR |
TTCTCATCATCGCCGCCTTC+TGG | 0.178462 | 4_3:-56955318 | Msa0650170:CDS |
GAACAACTTCACCGAACTTT+TGG | 0.218023 | 4_3:+56953812 | None:intergenic |
GCAGTAACCATTACCAATAA+AGG | 0.306069 | 4_3:+56952440 | None:intergenic |
TCAGGTTACTCTAAGGGATT+TGG | 0.331272 | 4_3:-56953643 | Msa0650170:CDS |
CCTGGAACCTTTATTGGTAA+TGG | 0.341065 | 4_3:-56952447 | Msa0650170:three_prime_UTR |
AGTATTATTTATTTAGTCAT+TGG | 0.346573 | 4_3:-56952578 | Msa0650170:three_prime_UTR |
TCGAGTCTCAGGTTACTCTA+AGG | 0.347313 | 4_3:-56953650 | Msa0650170:CDS |
CGGATGAACATAAATTAATA+AGG | 0.358256 | 4_3:+56952644 | None:intergenic |
CTGAAAAGTAAAACCCTTGA+TGG | 0.361594 | 4_3:+56955461 | None:intergenic |
GCTTCTCCGGGTGGTGGTCT+TGG | 0.365700 | 4_3:+56952686 | None:intergenic |
CGTATTATTTACAGCTTCTC+CGG | 0.378906 | 4_3:+56952673 | None:intergenic |
GAGAGCTGCAGCTGCGGCGG+CGG | 0.386601 | 4_3:-56955406 | Msa0650170:CDS |
ATATTTCTCTTTGATATGCC+TGG | 0.389123 | 4_3:-56952465 | Msa0650170:three_prime_UTR |
AAGTTCGGTGAAGTTGTTCA+TGG | 0.397028 | 4_3:-56953808 | Msa0650170:intron |
CCATTACCAATAAAGGTTCC+AGG | 0.427934 | 4_3:+56952447 | None:intergenic |
CTCTCTCCTTCAACCCATCA+AGG | 0.434680 | 4_3:-56955475 | Msa0650170:five_prime_UTR |
GACGCTGCTAGGGGCATTGA+AGG | 0.442065 | 4_3:-56953595 | Msa0650170:CDS |
AGCACCAACCTCTTCGTCTC+TGG | 0.450848 | 4_3:-56955261 | Msa0650170:intron |
CGGAGAAGCTGTAAATAATA+CGG | 0.453875 | 4_3:-56952672 | Msa0650170:CDS |
GATTATCCTCCCATTTCAAC+GGG | 0.459573 | 4_3:+56952511 | None:intergenic |
TTGCAAATTCAAACATAATG+AGG | 0.470183 | 4_3:+56952608 | None:intergenic |
TAGATAAATTAAGGCTAGCT+AGG | 0.473341 | 4_3:+56952544 | None:intergenic |
AAAGAGTCGGCAGAAACTGC+GGG | 0.478130 | 4_3:+56955380 | None:intergenic |
TAAAACCCTTGATGGGTTGA+AGG | 0.479055 | 4_3:+56955469 | None:intergenic |
CTACTTTAGAAGACGCTGCT+AGG | 0.489467 | 4_3:-56953606 | Msa0650170:CDS |
AGGGAAGCATTCCAAAAGTT+CGG | 0.494589 | 4_3:-56953823 | Msa0650170:CDS |
ATCTGTCGAGCGGAAGGCGG+CGG | 0.498886 | 4_3:+56955294 | None:intergenic |
TTTACAGCTTCTCCGGGTGG+TGG | 0.499800 | 4_3:+56952680 | None:intergenic |
CGTCAAAGCAGCCATGGGAT+GGG | 0.502131 | 4_3:+56955431 | None:intergenic |
GTGGTAACAGATCGAGTCTC+AGG | 0.506975 | 4_3:-56953661 | Msa0650170:CDS |
GCCGCCTTCCGCTCGACAGA+TGG | 0.507477 | 4_3:-56955292 | Msa0650170:CDS |
TACTTTAGAAGACGCTGCTA+GGG | 0.509025 | 4_3:-56953605 | Msa0650170:CDS |
GATGAGAGCTGCAGCTGCGG+CGG | 0.510313 | 4_3:-56955409 | Msa0650170:CDS |
TCGTCAAAGCAGCCATGGGA+TGG | 0.510354 | 4_3:+56955430 | None:intergenic |
TGGAGAAGAAGCGGTTGGAT+TGG | 0.515749 | 4_3:+56955353 | None:intergenic |
GATGAGAAAGAAGGGAAAGC+TGG | 0.519875 | 4_3:+56955333 | None:intergenic |
TATTTATTTAGTCATTGGCA+TGG | 0.524751 | 4_3:-56952573 | Msa0650170:three_prime_UTR |
GGCGGCGATGATGAGAAAGA+AGG | 0.531889 | 4_3:+56955324 | None:intergenic |
CGAGTCTCAGGTTACTCTAA+GGG | 0.537803 | 4_3:-56953649 | Msa0650170:CDS |
GTCAAAGCAGCCATGGGATG+GGG | 0.541430 | 4_3:+56955432 | None:intergenic |
TCTCTCCTTCAACCCATCAA+GGG | 0.542328 | 4_3:-56955474 | Msa0650170:five_prime_UTR |
TGCTAGGGGCATTGAAGGAA+TGG | 0.546033 | 4_3:-56953590 | Msa0650170:CDS |
GAAGAGGTTGGTGCTAGGCT+CGG | 0.548156 | 4_3:+56955269 | None:intergenic |
GTATTATTTACAGCTTCTCC+GGG | 0.550728 | 4_3:+56952674 | None:intergenic |
TCTCATCGTCAAAGCAGCCA+TGG | 0.558291 | 4_3:+56955425 | None:intergenic |
GCGGAAGGCGGCGGTCCAGA+AGG | 0.560349 | 4_3:+56955303 | None:intergenic |
GAAGGCGGCGGTCCAGAAGG+CGG | 0.560594 | 4_3:+56955306 | None:intergenic |
TCGGCCATCTGTCGAGCGGA+AGG | 0.561453 | 4_3:+56955288 | None:intergenic |
GACGATGAGAGCTGCAGCTG+CGG | 0.562915 | 4_3:-56955412 | Msa0650170:CDS |
TCAGCTTAAACCCCATCCCA+TGG | 0.564938 | 4_3:-56955442 | Msa0650170:exon |
AGATTATCCTCCCATTTCAA+CGG | 0.572042 | 4_3:+56952510 | None:intergenic |
GCCATCTGTCGAGCGGAAGG+CGG | 0.576022 | 4_3:+56955291 | None:intergenic |
TGAACATAAATTAATAAGGT+CGG | 0.576922 | 4_3:+56952648 | None:intergenic |
CTCATCGTCAAAGCAGCCAT+GGG | 0.581556 | 4_3:+56955426 | None:intergenic |
TGAAAAGTAAAACCCTTGAT+GGG | 0.583024 | 4_3:+56955462 | None:intergenic |
GCGGCGATGATGAGAAAGAA+GGG | 0.588249 | 4_3:+56955325 | None:intergenic |
GGAGAAGCTGTAAATAATAC+GGG | 0.589568 | 4_3:-56952671 | Msa0650170:CDS |
AAAGCTGGAGAAGAAGCGGT+TGG | 0.590957 | 4_3:+56955348 | None:intergenic |
GAGACGAAGAGGTTGGTGCT+AGG | 0.593582 | 4_3:+56955264 | None:intergenic |
CGAACCAGAGACGAAGAGGT+TGG | 0.593995 | 4_3:+56955257 | None:intergenic |
AGGGGCATTGAAGGAATGGA+TGG | 0.598515 | 4_3:-56953586 | Msa0650170:CDS |
ACCCGACCATCAACAACCCA+CGG | 0.598886 | 4_3:-56955564 | None:intergenic |
AGGGAAAGCTGGAGAAGAAG+CGG | 0.611069 | 4_3:+56955344 | None:intergenic |
TTGGATTGGTGCAAAAGAGT+CGG | 0.611688 | 4_3:+56955367 | None:intergenic |
AAAAGAGTCGGCAGAAACTG+CGG | 0.620147 | 4_3:+56955379 | None:intergenic |
TTATTTACAGCTTCTCCGGG+TGG | 0.622983 | 4_3:+56952677 | None:intergenic |
CATTGAAGGAATGGATGGCA+AGG | 0.640049 | 4_3:-56953581 | Msa0650170:intron |
AAGGCGAACCAGAGACGAAG+AGG | 0.640180 | 4_3:+56955253 | None:intergenic |
ATATCTGAACTCGCCAAATG+CGG | 0.642153 | 4_3:+56955513 | None:intergenic |
TTTGTCAATCTCAGCAAGGG+TGG | 0.647632 | 4_3:-56953680 | Msa0650170:intron |
TAAGGGAAAATAAACACCGT+GGG | 0.652471 | 4_3:+56955548 | None:intergenic |
GTACTACAACAGAGACGCTG+AGG | 0.653561 | 4_3:-56953843 | Msa0650170:CDS |
AGGCTCGGCCATCTGTCGAG+CGG | 0.658207 | 4_3:+56955284 | None:intergenic |
GCAAGACCAAGACCACCACC+CGG | 0.665523 | 4_3:-56952692 | Msa0650170:CDS |
ACTTTAGAAGACGCTGCTAG+GGG | 0.672740 | 4_3:-56953604 | Msa0650170:CDS |
TACTACAACAGAGACGCTGA+GGG | 0.682055 | 4_3:-56953842 | Msa0650170:CDS |
AATTTGCCCGTTGAAATGGG+AGG | 0.697791 | 4_3:-56952517 | Msa0650170:three_prime_UTR |
AAGAGTCGGCAGAAACTGCG+GGG | 0.717765 | 4_3:+56955381 | None:intergenic |
TTAAGGGAAAATAAACACCG+TGG | 0.753350 | 4_3:+56955547 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAATTATAATAATAATAATA+AGG | + | chr4_3:56952755-56952774 | None:intergenic | 0.0% |
!!! | AATTTATTTATTTTTATTTA+TGG | + | chr4_3:56953993-56954012 | None:intergenic | 0.0% |
!! | ATTATAATTATTATTGTTGT+TGG | - | chr4_3:56952765-56952784 | Msa0650170:intron | 10.0% |
!!! | TTTTTTATAATCCTTAAAAT+CGG | + | chr4_3:56952932-56952951 | None:intergenic | 10.0% |
!!! | AAATTTTTGTAGATAAATTA+AGG | + | chr4_3:56955434-56955453 | None:intergenic | 10.0% |
!!! | TTTATTTTTATTTATGGCAT+GGG | + | chr4_3:56953987-56954006 | None:intergenic | 15.0% |
!!! | ATTTATTTTTATTTATGGCA+TGG | + | chr4_3:56953988-56954007 | None:intergenic | 15.0% |
!! | AGTATTATTTATTTAGTCAT+TGG | - | chr4_3:56955388-56955407 | Msa0650170:CDS | 15.0% |
!! | TGTTTAAGCAATAAGTAAAT+AGG | + | chr4_3:56953133-56953152 | None:intergenic | 20.0% |
!! | TTTATCAATTTCATCATAGA+AGG | - | chr4_3:56953361-56953380 | Msa0650170:intron | 20.0% |
!!! | TTACAAAACCAATTTGTTAA+AGG | + | chr4_3:56953389-56953408 | None:intergenic | 20.0% |
!!! | ACAAATTGGTTTTGTAAATA+AGG | - | chr4_3:56953392-56953411 | Msa0650170:intron | 20.0% |
!!! | TTATTTTTATTTATGGCATG+GGG | + | chr4_3:56953986-56954005 | None:intergenic | 20.0% |
!! | AGTTTAAATGTTTAAAAGGA+TGG | + | chr4_3:56954192-56954211 | None:intergenic | 20.0% |
!! | GAACAGTTTAAATGTTTAAA+AGG | + | chr4_3:56954196-56954215 | None:intergenic | 20.0% |
!! | CAAAAAACATAAAACCATTA+TGG | + | chr4_3:56954270-56954289 | None:intergenic | 20.0% |
!! | TATTATAAAGACATACAATG+AGG | + | chr4_3:56954689-56954708 | None:intergenic | 20.0% |
!! | TAAATTAAGTTTATCTTAGG+TGG | + | chr4_3:56954731-56954750 | None:intergenic | 20.0% |
!!! | ACATTGTTATTGTATATGTA+TGG | - | chr4_3:56955104-56955123 | Msa0650170:intron | 20.0% |
!! | TGAACATAAATTAATAAGGT+CGG | + | chr4_3:56955321-56955340 | None:intergenic | 20.0% |
! | TAATAAGGAAAAGTTGAGAA+GGG | + | chr4_3:56952740-56952759 | None:intergenic | 25.0% |
! | ATAATAAGGAAAAGTTGAGA+AGG | + | chr4_3:56952741-56952760 | None:intergenic | 25.0% |
! | TTTATGTTCTCATTTGATCT+TGG | - | chr4_3:56952890-56952909 | Msa0650170:intron | 25.0% |
!! | ATAAATTTCTTTTCCCTTTG+TGG | - | chr4_3:56953201-56953220 | Msa0650170:intron | 25.0% |
! | TACTAATATCAAACCACAAA+GGG | + | chr4_3:56953217-56953236 | None:intergenic | 25.0% |
! | TTACTAATATCAAACCACAA+AGG | + | chr4_3:56953218-56953237 | None:intergenic | 25.0% |
! | AGAAAATATACTGTATGAGT+TGG | - | chr4_3:56953440-56953459 | Msa0650170:intron | 25.0% |
! | ACGATATAAGTAGAAATAAG+AGG | - | chr4_3:56953502-56953521 | Msa0650170:intron | 25.0% |
! | CGATATAAGTAGAAATAAGA+GGG | - | chr4_3:56953503-56953522 | Msa0650170:intron | 25.0% |
! | GATATAAGTAGAAATAAGAG+GGG | - | chr4_3:56953504-56953523 | Msa0650170:intron | 25.0% |
! | AATTAAGAGAATTGAATCCT+GGG | + | chr4_3:56953901-56953920 | None:intergenic | 25.0% |
! | AAATTAAGAGAATTGAATCC+TGG | + | chr4_3:56953902-56953921 | None:intergenic | 25.0% |
! | AAAATTGCAAATGACAATTG+AGG | + | chr4_3:56953952-56953971 | None:intergenic | 25.0% |
!! | ACATAAAACCATTATGGTTT+TGG | + | chr4_3:56954264-56954283 | None:intergenic | 25.0% |
! | GTAAGATTTATTAAACCCTT+TGG | - | chr4_3:56954407-56954426 | Msa0650170:intron | 25.0% |
! | CGGTAAATTAAGTTTATCTT+AGG | + | chr4_3:56954734-56954753 | None:intergenic | 25.0% |
! | TCTTAAAGCACAAATTTGTA+TGG | - | chr4_3:56954829-56954848 | Msa0650170:intron | 25.0% |
! | TACTCTAAATATTGAAGAGT+TGG | + | chr4_3:56954951-56954970 | None:intergenic | 25.0% |
! | AATACATGATTTACAGATTC+GGG | + | chr4_3:56954987-56955006 | None:intergenic | 25.0% |
! | CAATACATGATTTACAGATT+CGG | + | chr4_3:56954988-56955007 | None:intergenic | 25.0% |
! | CAATATTTGAATAGGAAGTT+TGG | + | chr4_3:56955191-56955210 | None:intergenic | 25.0% |
! | TCAGTAAGCAATATTTGAAT+AGG | + | chr4_3:56955199-56955218 | None:intergenic | 25.0% |
! | CGGATGAACATAAATTAATA+AGG | + | chr4_3:56955325-56955344 | None:intergenic | 25.0% |
! | TTGCAAATTCAAACATAATG+AGG | + | chr4_3:56955361-56955380 | None:intergenic | 25.0% |
! | TATTTATTTAGTCATTGGCA+TGG | - | chr4_3:56955393-56955412 | Msa0650170:CDS | 25.0% |
!!! | TGCGGTTTTTTTGTACTTAA+GGG | + | chr4_3:56952438-56952457 | None:intergenic | 30.0% |
!!! | ATGCGGTTTTTTTGTACTTA+AGG | + | chr4_3:56952439-56952458 | None:intergenic | 30.0% |
AAGTACAAAAAAACCGCATT+TGG | - | chr4_3:56952440-56952459 | Msa0650170:three_prime_UTR | 30.0% | |
TGAAAAGTAAAACCCTTGAT+GGG | + | chr4_3:56952507-56952526 | None:intergenic | 30.0% | |
!! | TTATGTTTTTGACCATGTTG+AGG | - | chr4_3:56952855-56952874 | Msa0650170:intron | 30.0% |
GGGAAAAGAAATTTATACAC+AGG | + | chr4_3:56953197-56953216 | None:intergenic | 30.0% | |
AAGGATCATTTCATAATCCT+CGG | - | chr4_3:56953625-56953644 | Msa0650170:CDS | 30.0% | |
! | TCAAGGAAATATGTTTCTGT+TGG | + | chr4_3:56953712-56953731 | None:intergenic | 30.0% |
! | TATTTTCAGAGATTGCTTCA+AGG | + | chr4_3:56953729-56953748 | None:intergenic | 30.0% |
! | ATGCAATTTAGAGCAAGTAT+GGG | + | chr4_3:56953813-56953832 | None:intergenic | 30.0% |
CTTTAATACACTTAATTCCC+AGG | - | chr4_3:56953881-56953900 | Msa0650170:intron | 30.0% | |
AATCTACTCCAAAACCATAA+TGG | - | chr4_3:56954253-56954272 | Msa0650170:intron | 30.0% | |
!!! | TTTTTTGTCAATCTCAGCAA+GGG | - | chr4_3:56954283-56954302 | Msa0650170:intron | 30.0% |
! | AGACTTAAGTGTATTTCTGT+CGG | - | chr4_3:56954452-56954471 | Msa0650170:intron | 30.0% |
! | TTGTTATCTTGGATCTGTTT+TGG | - | chr4_3:56954479-56954498 | Msa0650170:intron | 30.0% |
AAGAACAGTGAATACATTGT+TGG | + | chr4_3:56954813-56954832 | None:intergenic | 30.0% | |
TCATTAAATTTGATGTCAGG+AGG | + | chr4_3:56954927-56954946 | None:intergenic | 30.0% | |
GGATCATTAAATTTGATGTC+AGG | + | chr4_3:56954930-56954949 | None:intergenic | 30.0% | |
ATACATGATTTACAGATTCG+GGG | + | chr4_3:56954986-56955005 | None:intergenic | 30.0% | |
AGAAAAGCAAAGAACAATCA+TGG | + | chr4_3:56955166-56955185 | None:intergenic | 30.0% | |
! | ATGTTCATCCGAAACATTTT+TGG | - | chr4_3:56955334-56955353 | Msa0650170:CDS | 30.0% |
! | TGTTCATCCGAAACATTTTT+GGG | - | chr4_3:56955335-56955354 | Msa0650170:CDS | 30.0% |
! | TAGATAAATTAAGGCTAGCT+AGG | + | chr4_3:56955425-56955444 | None:intergenic | 30.0% |
AAAAATTTGCCCGTTGAAAT+GGG | - | chr4_3:56955446-56955465 | Msa0650170:five_prime_UTR | 30.0% | |
ATATTTCTCTTTGATATGCC+TGG | - | chr4_3:56955501-56955520 | Msa0650170:five_prime_UTR | 30.0% | |
TAAGGGAAAATAAACACCGT+GGG | + | chr4_3:56952421-56952440 | None:intergenic | 35.0% | |
TTAAGGGAAAATAAACACCG+TGG | + | chr4_3:56952422-56952441 | None:intergenic | 35.0% | |
CTGAAAAGTAAAACCCTTGA+TGG | + | chr4_3:56952508-56952527 | None:intergenic | 35.0% | |
CATCATATGAAACCTCAACA+TGG | + | chr4_3:56952870-56952889 | None:intergenic | 35.0% | |
CTCATTTGATCTTGGTTGTT+TGG | - | chr4_3:56952898-56952917 | Msa0650170:intron | 35.0% | |
TGATCTTGGTTGTTTGGTTA+TGG | - | chr4_3:56952904-56952923 | Msa0650170:intron | 35.0% | |
! | TGGTTATGGATCCGATTTTA+AGG | - | chr4_3:56952918-56952937 | Msa0650170:intron | 35.0% |
TAAATCTATCTCACTCTCAC+GGG | + | chr4_3:56953304-56953323 | None:intergenic | 35.0% | |
GTAAATCTATCTCACTCTCA+CGG | + | chr4_3:56953305-56953324 | None:intergenic | 35.0% | |
AGAAGGAGCCTTTAACAAAT+TGG | - | chr4_3:56953378-56953397 | Msa0650170:intron | 35.0% | |
GACACAGTCAAGAACTTAAA+AGG | + | chr4_3:56953537-56953556 | None:intergenic | 35.0% | |
!! | CTAGAGAAAGCATCTAAGAA+AGG | - | chr4_3:56953606-56953625 | Msa0650170:CDS | 35.0% |
! | CATGCAATTTAGAGCAAGTA+TGG | + | chr4_3:56953814-56953833 | None:intergenic | 35.0% |
! | CATACTTGCTCTAAATTGCA+TGG | - | chr4_3:56953812-56953831 | Msa0650170:CDS | 35.0% |
! | AATGACAATTGAGGCATCAA+TGG | + | chr4_3:56953943-56953962 | None:intergenic | 35.0% |
TTTATTTATGGCATGGGGAA+GGG | + | chr4_3:56953981-56954000 | None:intergenic | 35.0% | |
!! | TTTTATTTATGGCATGGGGA+AGG | + | chr4_3:56953982-56954001 | None:intergenic | 35.0% |
TTGACGTGTCTTAAACTTTC+AGG | - | chr4_3:56954089-56954108 | Msa0650170:intron | 35.0% | |
TGACGTGTCTTAAACTTTCA+GGG | - | chr4_3:56954090-56954109 | Msa0650170:intron | 35.0% | |
!!! | GTTTTTTGTCAATCTCAGCA+AGG | - | chr4_3:56954282-56954301 | Msa0650170:intron | 35.0% |
CACTTAAGTCTTCTCGTATA+AGG | + | chr4_3:56954443-56954462 | None:intergenic | 35.0% | |
AAATTTGATGTCAGGAGGAA+GGG | + | chr4_3:56954922-56954941 | None:intergenic | 35.0% | |
TAAATTTGATGTCAGGAGGA+AGG | + | chr4_3:56954923-56954942 | None:intergenic | 35.0% | |
ATGCAACTGACAACAAAACT+CGG | + | chr4_3:56955061-56955080 | None:intergenic | 35.0% | |
! | TTCCCTTGCAATACAGTTTT+TGG | - | chr4_3:56955225-56955244 | Msa0650170:intron | 35.0% |
CTCCAAAAACTGTATTGCAA+GGG | + | chr4_3:56955230-56955249 | None:intergenic | 35.0% | |
!! | CTTGCAATACAGTTTTTGGA+GGG | - | chr4_3:56955229-56955248 | Msa0650170:intron | 35.0% |
GTATTATTTACAGCTTCTCC+GGG | + | chr4_3:56955295-56955314 | None:intergenic | 35.0% | |
CGTATTATTTACAGCTTCTC+CGG | + | chr4_3:56955296-56955315 | None:intergenic | 35.0% | |
CGGAGAAGCTGTAAATAATA+CGG | - | chr4_3:56955294-56955313 | Msa0650170:CDS | 35.0% | |
GGAGAAGCTGTAAATAATAC+GGG | - | chr4_3:56955295-56955314 | Msa0650170:CDS | 35.0% | |
AATGAGGCCCAAAAATGTTT+CGG | + | chr4_3:56955345-56955364 | None:intergenic | 35.0% | |
CAAAAATTTGCCCGTTGAAA+TGG | - | chr4_3:56955445-56955464 | Msa0650170:exon | 35.0% | |
AGATTATCCTCCCATTTCAA+CGG | + | chr4_3:56955459-56955478 | None:intergenic | 35.0% | |
GCAGTAACCATTACCAATAA+AGG | + | chr4_3:56955529-56955548 | None:intergenic | 35.0% | |
ATATCTGAACTCGCCAAATG+CGG | + | chr4_3:56952456-56952475 | None:intergenic | 40.0% | |
!! | TAAAACCCTTGATGGGTTGA+AGG | + | chr4_3:56952500-56952519 | None:intergenic | 40.0% |
!! | TTGGATTGGTGCAAAAGAGT+CGG | + | chr4_3:56952602-56952621 | None:intergenic | 40.0% |
AGGAAAAGTTGAGAAGGGAA+AGG | + | chr4_3:56952735-56952754 | None:intergenic | 40.0% | |
TCTCACGGGTAGTAAAACTA+AGG | + | chr4_3:56953290-56953309 | None:intergenic | 40.0% | |
CTCAAAAGAGACCTACAGTA+CGG | - | chr4_3:56953685-56953704 | Msa0650170:intron | 40.0% | |
!! | GTTTTCGCTTTTGAGCCAAA+CGG | + | chr4_3:56953862-56953881 | None:intergenic | 40.0% |
! | CAATGGCATGTTGTTTAGAG+AGG | + | chr4_3:56953926-56953945 | None:intergenic | 40.0% |
!! | AGGGAAGCATTCCAAAAGTT+CGG | - | chr4_3:56954143-56954162 | Msa0650170:intron | 40.0% |
! | GAACAACTTCACCGAACTTT+TGG | + | chr4_3:56954157-56954176 | None:intergenic | 40.0% |
! | AAGTTCGGTGAAGTTGTTCA+TGG | - | chr4_3:56954158-56954177 | Msa0650170:intron | 40.0% |
! | TCAGGTTACTCTAAGGGATT+TGG | - | chr4_3:56954323-56954342 | Msa0650170:intron | 40.0% |
! | TACTTTAGAAGACGCTGCTA+GGG | - | chr4_3:56954361-56954380 | Msa0650170:intron | 40.0% |
CTGTCGGAACATTGTTATCT+TGG | - | chr4_3:56954468-56954487 | Msa0650170:intron | 40.0% | |
ATTTCACTTGTGTGTCATCG+TGG | - | chr4_3:56954513-56954532 | Msa0650170:intron | 40.0% | |
ACAATGTGACACACGGATTT+CGG | - | chr4_3:56954564-56954583 | Msa0650170:intron | 40.0% | |
! | ATTTCGGTCTTGTGAAAGAG+AGG | - | chr4_3:56954580-56954599 | Msa0650170:intron | 40.0% |
! | TTTCGGTCTTGTGAAAGAGA+GGG | - | chr4_3:56954581-56954600 | Msa0650170:intron | 40.0% |
AACACTTGTGTGTCACATTG+TGG | - | chr4_3:56954614-56954633 | Msa0650170:intron | 40.0% | |
AGTGTGATGTGTATATGCTG+CGG | + | chr4_3:56954760-56954779 | None:intergenic | 40.0% | |
TTTACTGCAAACTCGAGTAG+AGG | + | chr4_3:56954856-56954875 | None:intergenic | 40.0% | |
AATTTGATGTCAGGAGGAAG+GGG | + | chr4_3:56954921-56954940 | None:intergenic | 40.0% | |
CCTCCAAAAACTGTATTGCA+AGG | + | chr4_3:56955231-56955250 | None:intergenic | 40.0% | |
!! | CCTTGCAATACAGTTTTTGG+AGG | - | chr4_3:56955228-56955247 | Msa0650170:intron | 40.0% |
!! | AATACAGTTTTTGGAGGGCT+GGG | - | chr4_3:56955234-56955253 | Msa0650170:intron | 40.0% |
GATTATCCTCCCATTTCAAC+GGG | + | chr4_3:56955458-56955477 | None:intergenic | 40.0% | |
GATATGCCTGGAACCTTTAT+TGG | - | chr4_3:56955513-56955532 | Msa0650170:five_prime_UTR | 40.0% | |
CCATTACCAATAAAGGTTCC+AGG | + | chr4_3:56955522-56955541 | None:intergenic | 40.0% | |
CCTGGAACCTTTATTGGTAA+TGG | - | chr4_3:56955519-56955538 | Msa0650170:five_prime_UTR | 40.0% | |
TCTCTCCTTCAACCCATCAA+GGG | - | chr4_3:56952492-56952511 | Msa0650170:three_prime_UTR | 45.0% | |
AAAAGAGTCGGCAGAAACTG+CGG | + | chr4_3:56952590-56952609 | None:intergenic | 45.0% | |
GATGAGAAAGAAGGGAAAGC+TGG | + | chr4_3:56952636-56952655 | None:intergenic | 45.0% | |
TTTCTGTTGGACCGTACTGT+AGG | + | chr4_3:56953699-56953718 | None:intergenic | 45.0% | |
!! | TTCAAAGCACTGTGACCGTT+TGG | - | chr4_3:56953844-56953863 | Msa0650170:CDS | 45.0% |
TACTACAACAGAGACGCTGA+GGG | - | chr4_3:56954124-56954143 | Msa0650170:intron | 45.0% | |
TTTGTCAATCTCAGCAAGGG+TGG | - | chr4_3:56954286-56954305 | Msa0650170:intron | 45.0% | |
TCGAGTCTCAGGTTACTCTA+AGG | - | chr4_3:56954316-56954335 | Msa0650170:intron | 45.0% | |
CGAGTCTCAGGTTACTCTAA+GGG | - | chr4_3:56954317-56954336 | Msa0650170:intron | 45.0% | |
! | CTACTTTAGAAGACGCTGCT+AGG | - | chr4_3:56954360-56954379 | Msa0650170:intron | 45.0% |
! | ACTTTAGAAGACGCTGCTAG+GGG | - | chr4_3:56954362-56954381 | Msa0650170:intron | 45.0% |
CATTGAAGGAATGGATGGCA+AGG | - | chr4_3:56954385-56954404 | Msa0650170:intron | 45.0% | |
AGTCTTCTCGTATAAGGTGC+AGG | + | chr4_3:56954437-56954456 | None:intergenic | 45.0% | |
GAAATCCGTGTGTCACATTG+TGG | + | chr4_3:56954565-56954584 | None:intergenic | 45.0% | |
CTTGTGTGTCACATTGTGGT+TGG | - | chr4_3:56954618-56954637 | Msa0650170:intron | 45.0% | |
ATTGTGGTCGGAATGTCACA+TGG | + | chr4_3:56954650-56954669 | None:intergenic | 45.0% | |
CACTTGTGTGACATTGTGGT+CGG | + | chr4_3:56954662-56954681 | None:intergenic | 45.0% | |
GACCACAATGTCACACAAGT+GGG | - | chr4_3:56954661-56954680 | Msa0650170:intron | 45.0% | |
ATCCCACTTGTGTGACATTG+TGG | + | chr4_3:56954666-56954685 | None:intergenic | 45.0% | |
ATGTGTATATGCTGCGGTGT+CGG | + | chr4_3:56954754-56954773 | None:intergenic | 45.0% | |
!! | CAATACAGTTTTTGGAGGGC+TGG | - | chr4_3:56955233-56955252 | Msa0650170:intron | 45.0% |
TTATTTACAGCTTCTCCGGG+TGG | + | chr4_3:56955292-56955311 | None:intergenic | 45.0% | |
AATTTGCCCGTTGAAATGGG+AGG | - | chr4_3:56955449-56955468 | Msa0650170:five_prime_UTR | 45.0% | |
CTCTCTCCTTCAACCCATCA+AGG | - | chr4_3:56952491-56952510 | Msa0650170:three_prime_UTR | 50.0% | |
TCAGCTTAAACCCCATCCCA+TGG | - | chr4_3:56952524-56952543 | Msa0650170:three_prime_UTR | 50.0% | |
CTCATCGTCAAAGCAGCCAT+GGG | + | chr4_3:56952543-56952562 | None:intergenic | 50.0% | |
TCTCATCGTCAAAGCAGCCA+TGG | + | chr4_3:56952544-56952563 | None:intergenic | 50.0% | |
AAAGAGTCGGCAGAAACTGC+GGG | + | chr4_3:56952589-56952608 | None:intergenic | 50.0% | |
TGGAGAAGAAGCGGTTGGAT+TGG | + | chr4_3:56952616-56952635 | None:intergenic | 50.0% | |
AAAGCTGGAGAAGAAGCGGT+TGG | + | chr4_3:56952621-56952640 | None:intergenic | 50.0% | |
AGGGAAAGCTGGAGAAGAAG+CGG | + | chr4_3:56952625-56952644 | None:intergenic | 50.0% | |
GCGGCGATGATGAGAAAGAA+GGG | + | chr4_3:56952644-56952663 | None:intergenic | 50.0% | |
TTCGAGTAGACACTTGACCG+AGG | + | chr4_3:56953645-56953664 | None:intergenic | 50.0% | |
ATTTATGGCATGGGGAAGGG+AGG | + | chr4_3:56953978-56953997 | None:intergenic | 50.0% | |
GTACTACAACAGAGACGCTG+AGG | - | chr4_3:56954123-56954142 | Msa0650170:intron | 50.0% | |
GTGGTAACAGATCGAGTCTC+AGG | - | chr4_3:56954305-56954324 | Msa0650170:intron | 50.0% | |
!! | TGCTAGGGGCATTGAAGGAA+TGG | - | chr4_3:56954376-56954395 | Msa0650170:intron | 50.0% |
!! | AGGGGCATTGAAGGAATGGA+TGG | - | chr4_3:56954380-56954399 | Msa0650170:intron | 50.0% |
TTCTCGTATAAGGTGCAGGC+AGG | + | chr4_3:56954433-56954452 | None:intergenic | 50.0% | |
TCACTTGTGTGTCATCGTGG+TGG | - | chr4_3:56954516-56954535 | Msa0650170:intron | 50.0% | |
CACTTGTGTGTCATCGTGGT+GGG | - | chr4_3:56954517-56954536 | Msa0650170:intron | 50.0% | |
ACTTGTGTGTCATCGTGGTG+GGG | - | chr4_3:56954518-56954537 | Msa0650170:intron | 50.0% | |
CCGTGTGTCACATTGTGGTT+GGG | + | chr4_3:56954560-56954579 | None:intergenic | 50.0% | |
CCCAACCACAATGTGACACA+CGG | - | chr4_3:56954557-56954576 | Msa0650170:intron | 50.0% | |
TCCGTGTGTCACATTGTGGT+TGG | + | chr4_3:56954561-56954580 | None:intergenic | 50.0% | |
CGACCACAATGTCACACAAG+TGG | - | chr4_3:56954660-56954679 | Msa0650170:intron | 50.0% | |
GTCAAAGCAGCCATGGGATG+GGG | + | chr4_3:56952537-56952556 | None:intergenic | 55.0% | |
CGTCAAAGCAGCCATGGGAT+GGG | + | chr4_3:56952538-56952557 | None:intergenic | 55.0% | |
TCGTCAAAGCAGCCATGGGA+TGG | + | chr4_3:56952539-56952558 | None:intergenic | 55.0% | |
AAGAGTCGGCAGAAACTGCG+GGG | + | chr4_3:56952588-56952607 | None:intergenic | 55.0% | |
GGCGGCGATGATGAGAAAGA+AGG | + | chr4_3:56952645-56952664 | None:intergenic | 55.0% | |
TTCTCATCATCGCCGCCTTC+TGG | - | chr4_3:56952648-56952667 | Msa0650170:exon | 55.0% | |
!! | GAAGAGGTTGGTGCTAGGCT+CGG | + | chr4_3:56952700-56952719 | None:intergenic | 55.0% |
!! | GAGACGAAGAGGTTGGTGCT+AGG | + | chr4_3:56952705-56952724 | None:intergenic | 55.0% |
AGCACCAACCTCTTCGTCTC+TGG | - | chr4_3:56952705-56952724 | Msa0650170:CDS | 55.0% | |
CGAACCAGAGACGAAGAGGT+TGG | + | chr4_3:56952712-56952731 | None:intergenic | 55.0% | |
AAGGCGAACCAGAGACGAAG+AGG | + | chr4_3:56952716-56952735 | None:intergenic | 55.0% | |
TAAGGTGCAGGCAGGCCAAA+GGG | + | chr4_3:56954425-56954444 | None:intergenic | 55.0% | |
ATAAGGTGCAGGCAGGCCAA+AGG | + | chr4_3:56954426-56954445 | None:intergenic | 55.0% | |
TTTACAGCTTCTCCGGGTGG+TGG | + | chr4_3:56955289-56955308 | None:intergenic | 55.0% | |
GACGATGAGAGCTGCAGCTG+CGG | - | chr4_3:56952554-56952573 | Msa0650170:three_prime_UTR | 60.0% | |
!! | GACGCTGCTAGGGGCATTGA+AGG | - | chr4_3:56954371-56954390 | Msa0650170:intron | 60.0% |
GCAAGACCAAGACCACCACC+CGG | - | chr4_3:56955274-56955293 | Msa0650170:CDS | 60.0% | |
GATGAGAGCTGCAGCTGCGG+CGG | - | chr4_3:56952557-56952576 | Msa0650170:three_prime_UTR | 65.0% | |
ATCTGTCGAGCGGAAGGCGG+CGG | + | chr4_3:56952675-56952694 | None:intergenic | 65.0% | |
GCCATCTGTCGAGCGGAAGG+CGG | + | chr4_3:56952678-56952697 | None:intergenic | 65.0% | |
TCGGCCATCTGTCGAGCGGA+AGG | + | chr4_3:56952681-56952700 | None:intergenic | 65.0% | |
AGGCTCGGCCATCTGTCGAG+CGG | + | chr4_3:56952685-56952704 | None:intergenic | 65.0% | |
! | GCTTCTCCGGGTGGTGGTCT+TGG | + | chr4_3:56955283-56955302 | None:intergenic | 65.0% |
GAAGGCGGCGGTCCAGAAGG+CGG | + | chr4_3:56952663-56952682 | None:intergenic | 70.0% | |
GCCGCCTTCCGCTCGACAGA+TGG | - | chr4_3:56952674-56952693 | Msa0650170:CDS | 70.0% | |
GAGAGCTGCAGCTGCGGCGG+CGG | - | chr4_3:56952560-56952579 | Msa0650170:three_prime_UTR | 75.0% | |
GCGGAAGGCGGCGGTCCAGA+AGG | + | chr4_3:56952666-56952685 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 56952412 | 56955576 | 56952412 | ID=Msa0650170;Name=Msa0650170 |
chr4_3 | mRNA | 56952412 | 56955576 | 56952412 | ID=Msa0650170-mRNA-1;Parent=Msa0650170;Name=Msa0650170-mRNA-1;_AED=0.35;_eAED=0.35;_QI=131|1|1|1|1|1|4|246|149 |
chr4_3 | exon | 56952412 | 56952747 | 56952412 | ID=Msa0650170-mRNA-1:exon:14949;Parent=Msa0650170-mRNA-1 |
chr4_3 | exon | 56953582 | 56953688 | 56953582 | ID=Msa0650170-mRNA-1:exon:14948;Parent=Msa0650170-mRNA-1 |
chr4_3 | exon | 56953809 | 56953877 | 56953809 | ID=Msa0650170-mRNA-1:exon:14947;Parent=Msa0650170-mRNA-1 |
chr4_3 | exon | 56955262 | 56955576 | 56955262 | ID=Msa0650170-mRNA-1:exon:14946;Parent=Msa0650170-mRNA-1 |
chr4_3 | five_prime_UTR | 56955446 | 56955576 | 56955446 | ID=Msa0650170-mRNA-1:five_prime_utr;Parent=Msa0650170-mRNA-1 |
chr4_3 | CDS | 56955262 | 56955445 | 56955262 | ID=Msa0650170-mRNA-1:cds;Parent=Msa0650170-mRNA-1 |
chr4_3 | CDS | 56953809 | 56953877 | 56953809 | ID=Msa0650170-mRNA-1:cds;Parent=Msa0650170-mRNA-1 |
chr4_3 | CDS | 56953582 | 56953688 | 56953582 | ID=Msa0650170-mRNA-1:cds;Parent=Msa0650170-mRNA-1 |
chr4_3 | CDS | 56952658 | 56952747 | 56952658 | ID=Msa0650170-mRNA-1:cds;Parent=Msa0650170-mRNA-1 |
chr4_3 | three_prime_UTR | 56952412 | 56952657 | 56952412 | ID=Msa0650170-mRNA-1:three_prime_utr;Parent=Msa0650170-mRNA-1 |
Gene Sequence |
Protein sequence |