AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650320 MtrunA17_Chr4g0042561 98.524 271 3 1 1 270 1 271 0.0 556
Msa0650320 MtrunA17_Chr5g0417791 71.206 257 64 4 8 258 2 254 1.30e-132 375
Msa0650320 MtrunA17_Chr2g0326361 68.263 167 51 1 9 173 14 180 3.67e-82 249
Msa0650320 MtrunA17_Chr2g0318101 51.464 239 101 5 4 229 10 246 5.62e-80 245
Msa0650320 MtrunA17_Chr7g0263931 62.766 188 60 3 8 187 10 195 6.05e-80 244
Msa0650320 MtrunA17_Chr7g0252971 54.894 235 82 6 9 219 8 242 1.50e-79 243
Msa0650320 MtrunA17_Chr4g0047841 64.804 179 42 3 4 161 10 188 1.94e-78 241
Msa0650320 MtrunA17_Chr8g0384721 64.516 155 54 1 8 162 6 159 4.93e-73 225
Msa0650320 MtrunA17_Chr3g0124761 65.161 155 52 2 8 162 6 158 5.46e-72 222
Msa0650320 MtrunA17_Chr2g0318081 63.694 157 53 1 5 161 12 164 2.72e-71 223
Msa0650320 MtrunA17_Chr8g0359921 64.052 153 53 1 9 161 14 164 9.67e-71 221
Msa0650320 MtrunA17_Chr3g0130731 63.226 155 55 2 8 162 6 158 1.31e-68 214
Msa0650320 MtrunA17_Chr2g0309891 57.419 155 61 3 9 161 6 157 9.92e-60 193
Msa0650320 MtrunA17_Chr6g0484441 46.667 210 99 3 9 211 5 208 1.53e-59 192
Msa0650320 MtrunA17_Chr4g0060931 54.717 159 70 1 8 166 16 172 3.49e-59 192
Msa0650320 MtrunA17_Chr6g0453451 51.786 168 79 1 1 168 12 177 1.18e-58 189
Msa0650320 MtrunA17_Chr2g0309331 48.168 191 88 4 1 186 2 186 7.89e-58 188
Msa0650320 MtrunA17_Chr7g0214071 59.119 159 54 3 9 165 15 164 8.00e-58 185
Msa0650320 MtrunA17_Chr6g0481091 46.734 199 95 6 9 200 6 200 2.08e-57 183
Msa0650320 MtrunA17_Chr3g0091921 55.696 158 68 1 9 166 16 171 2.59e-57 185
Msa0650320 MtrunA17_Chr8g0361731 49.738 191 82 5 11 189 16 204 2.75e-57 188
Msa0650320 MtrunA17_Chr4g0017921 41.367 278 134 9 3 265 2 265 2.21e-56 184
Msa0650320 MtrunA17_Chr3g0139331 52.941 170 70 3 1 166 1 164 3.64e-56 184
Msa0650320 MtrunA17_Chr5g0417001 54.658 161 63 3 11 163 16 174 4.20e-56 185
Msa0650320 MtrunA17_Chr2g0316971 54.088 159 69 2 9 165 23 179 1.41e-55 183
Msa0650320 MtrunA17_Chr6g0453131 51.136 176 80 3 1 170 7 182 2.09e-55 183
Msa0650320 MtrunA17_Chr1g0200561 53.846 156 63 3 9 161 19 168 5.49e-55 181
Msa0650320 MtrunA17_Chr4g0056541 50.296 169 73 3 9 174 7 167 7.87e-55 181
Msa0650320 MtrunA17_Chr8g0346001 44.019 209 102 5 4 200 10 215 1.25e-54 182
Msa0650320 MtrunA17_Chr4g0018391 51.592 157 67 2 9 162 7 157 2.10e-54 179
Msa0650320 MtrunA17_Chr5g0405211 50.955 157 68 2 9 162 8 158 5.94e-54 178
Msa0650320 MtrunA17_Chr5g0433781 54.088 159 67 2 5 161 2 156 8.56e-54 184
Msa0650320 MtrunA17_Chr3g0109821 54.088 159 68 3 5 161 2 157 1.83e-53 183
Msa0650320 MtrunA17_Chr7g0253011 53.165 158 68 2 8 161 16 171 2.71e-53 177
Msa0650320 MtrunA17_Chr1g0147421 53.659 164 61 5 9 166 27 181 1.04e-52 175
Msa0650320 MtrunA17_Chr8g0372121 49.045 157 71 2 9 162 6 156 3.08e-52 172
Msa0650320 MtrunA17_Chr5g0398971 49.112 169 76 4 9 173 7 169 5.15e-52 173
Msa0650320 MtrunA17_Chr7g0217721 46.286 175 79 2 8 169 18 190 7.45e-51 170
Msa0650320 MtrunA17_Chr6g0461661 39.313 262 134 8 8 261 17 261 8.50e-51 171
Msa0650320 MtrunA17_Chr5g0442771 51.572 159 69 3 11 161 20 178 1.63e-50 168
Msa0650320 MtrunA17_Chr8g0385991 45.902 183 92 4 9 187 14 193 8.26e-50 164
Msa0650320 MtrunA17_Chr4g0076731 51.316 152 67 3 11 161 56 201 1.95e-49 168
Msa0650320 MtrunA17_Chr2g0312321 48.428 159 77 3 3 161 5 158 2.64e-49 165
Msa0650320 MtrunA17_Chr7g0261411 48.366 153 69 3 9 159 10 154 4.38e-49 164
Msa0650320 MtrunA17_Chr1g0183741 47.205 161 72 4 9 167 10 159 4.88e-49 163
Msa0650320 MtrunA17_Chr2g0311651 50.920 163 68 5 11 161 24 186 2.21e-48 162
Msa0650320 MtrunA17_Chr5g0400461 50.000 164 66 3 9 163 6 162 9.42e-48 161
Msa0650320 MtrunA17_Chr3g0131911 51.553 161 70 3 8 162 13 171 3.85e-47 157
Msa0650320 MtrunA17_Chr2g0311661 51.220 164 66 4 11 161 23 185 4.55e-47 158
Msa0650320 MtrunA17_Chr3g0144271 58.140 129 51 2 9 134 23 151 7.92e-47 161
Msa0650320 MtrunA17_Chr1g0197351 49.689 161 77 2 9 165 42 202 1.12e-46 162
Msa0650320 MtrunA17_Chr5g0428991 52.201 159 66 3 8 162 24 176 1.44e-46 164
Msa0650320 MtrunA17_Chr4g0054791 49.398 166 73 4 9 168 6 166 2.41e-46 157
Msa0650320 MtrunA17_Chr7g0217711 54.264 129 59 0 8 136 18 146 7.41e-46 152
Msa0650320 MtrunA17_Chr4g0038751 48.171 164 73 2 11 171 17 171 1.20e-45 155
Msa0650320 MtrunA17_Chr1g0201021 47.134 157 77 2 11 165 21 173 2.67e-45 160
Msa0650320 MtrunA17_Chr3g0128151 50.955 157 67 3 9 161 22 172 8.64e-45 159
Msa0650320 MtrunA17_Chr3g0092671 48.428 159 72 5 11 165 7 159 2.34e-44 157
Msa0650320 MtrunA17_Chr1g0197361 47.468 158 75 4 11 165 10 162 7.94e-44 156
Msa0650320 MtrunA17_Chr8g0364791 45.399 163 83 3 5 165 2 160 1.19e-43 153
Msa0650320 MtrunA17_Chr3g0130101 44.586 157 81 3 11 165 9 161 1.38e-43 151
Msa0650320 MtrunA17_Chr3g0128111 47.134 157 67 3 12 161 45 192 6.34e-43 146
Msa0650320 MtrunA17_Chr8g0384201 43.558 163 86 3 5 165 2 160 4.02e-41 147
Msa0650320 MtrunA17_Chr4g0050701 40.764 157 81 3 9 161 11 159 2.00e-37 130
Msa0650320 MtrunA17_Chr3g0113001 53.543 127 51 4 58 182 14 134 1.23e-36 131
Msa0650320 MtrunA17_Chr4g0026141 44.654 159 77 5 9 159 5 160 2.93e-36 129
Msa0650320 MtrunA17_Chr2g0321631 43.312 157 81 4 10 159 5 160 5.16e-36 129
Msa0650320 MtrunA17_Chr7g0266701 39.181 171 96 4 9 171 4 174 1.67e-35 127
Msa0650320 MtrunA17_Chr2g0321741 49.180 122 50 2 40 160 23 133 2.63e-35 129
Msa0650320 MtrunA17_Chr8g0345671 50.769 130 58 4 8 132 10 138 1.08e-34 129
Msa0650320 MtrunA17_Chr8g0345711 40.625 160 82 6 9 156 12 170 1.48e-31 115
Msa0650320 MtrunA17_Chr8g0384351 40.741 162 72 5 1 162 2 139 1.77e-30 112
Msa0650320 MtrunA17_Chr8g0345691 42.038 157 72 7 9 158 12 156 3.00e-29 114
Msa0650320 MtrunA17_Chr3g0113031 52.632 114 43 4 73 182 4 110 4.00e-29 111
Msa0650320 MtrunA17_Chr8g0345731 45.802 131 64 5 9 132 24 154 1.66e-28 107
Msa0650320 MtrunA17_Chr8g0345721 38.554 166 62 6 6 132 27 191 4.53e-27 104
Msa0650320 MtrunA17_Chr3g0130321 36.420 162 87 6 8 160 6 160 2.81e-25 99.8
Msa0650320 MtrunA17_Chr7g0243371 58.667 75 29 1 62 134 17 91 1.07e-23 92.8
Msa0650320 MtrunA17_Chr8g0345741 42.373 118 62 4 20 132 2 118 2.70e-23 92.8
Msa0650320 MtrunA17_Chr8g0345701 37.748 151 70 7 1 132 1 146 6.86e-22 89.7
Msa0650320 MtrunA17_Chr7g0251661 28.289 152 102 5 3 151 4 151 4.25e-18 79.3
Msa0650320 MtrunA17_Chr7g0251671 29.323 133 88 4 3 132 4 133 1.23e-17 78.2
Msa0650320 MtrunA17_Chr7g0251651 29.375 160 103 6 8 161 17 172 1.28e-17 79.0
Msa0650320 MtrunA17_Chr7g0274971 32.692 156 86 7 15 160 11 157 1.25e-12 65.5
Msa0650320 MtrunA17_Chr4g0040541 31.724 145 81 5 7 134 46 189 3.86e-11 62.0
Msa0650320 MtrunA17_Chr2g0282871 31.293 147 78 6 7 134 51 193 8.15e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650320 AT1G69490.1 65.333 225 67 2 1 214 1 225 5.78e-109 316
Msa0650320 AT1G61110.1 68.902 164 42 2 7 161 14 177 3.42e-79 242
Msa0650320 AT3G04070.2 55.963 218 77 5 9 207 10 227 5.94e-79 242
Msa0650320 AT3G04070.1 52.991 234 75 6 9 207 10 243 1.72e-77 239
Msa0650320 AT3G15510.1 62.573 171 55 2 13 174 21 191 1.42e-75 234
Msa0650320 AT1G77450.1 62.195 164 60 2 1 164 2 163 1.41e-73 226
Msa0650320 AT4G27410.2 51.131 221 88 4 5 210 10 225 3.55e-73 226
Msa0650320 AT3G15500.1 60.000 175 62 2 1 175 6 172 5.11e-73 226
Msa0650320 AT1G52890.1 59.218 179 65 2 9 187 14 184 7.07e-73 226
Msa0650320 AT1G01720.1 63.871 155 55 1 8 162 6 159 4.92e-71 220
Msa0650320 AT4G27410.3 47.479 238 88 5 5 210 10 242 1.42e-68 215
Msa0650320 AT5G08790.1 62.581 155 56 2 9 162 7 160 3.49e-68 213
Msa0650320 AT1G52880.1 68.153 157 42 2 13 161 21 177 1.78e-67 212
Msa0650320 AT5G63790.2 56.111 180 76 3 5 182 56 234 5.80e-67 211
Msa0650320 AT5G63790.1 56.111 180 76 3 5 182 46 224 5.93e-67 211
Msa0650320 AT5G39610.1 54.545 165 73 1 1 165 12 174 5.15e-60 192
Msa0650320 AT5G07680.2 55.280 161 70 1 8 168 2 160 1.33e-59 192
Msa0650320 AT5G07680.1 55.280 161 70 1 8 168 16 174 1.39e-59 192
Msa0650320 AT5G61430.1 54.658 161 71 1 8 168 15 173 2.61e-59 192
Msa0650320 AT2G33480.2 56.410 156 59 2 8 163 14 160 1.34e-58 187
Msa0650320 AT2G33480.1 58.333 156 58 3 8 163 14 162 1.64e-58 187
Msa0650320 AT5G13180.1 58.125 160 57 4 8 165 13 164 7.56e-58 185
Msa0650320 AT3G18400.1 51.899 158 71 1 9 166 5 157 9.65e-58 187
Msa0650320 AT4G36160.2 48.128 187 87 3 1 183 5 185 4.41e-57 187
Msa0650320 AT4G36160.1 48.128 187 87 3 1 183 1 181 4.89e-57 187
Msa0650320 AT4G36160.3 48.128 187 87 3 1 183 1 181 4.89e-57 187
Msa0650320 AT2G18060.3 46.032 189 92 3 1 186 1 182 6.95e-57 186
Msa0650320 AT2G18060.1 46.032 189 92 3 1 186 1 182 6.95e-57 186
Msa0650320 AT3G17730.1 50.581 172 79 3 9 178 6 173 7.37e-57 182
Msa0650320 AT2G24430.2 55.280 161 63 3 9 166 16 170 7.97e-57 185
Msa0650320 AT2G24430.1 55.280 161 63 3 9 166 16 170 7.97e-57 185
Msa0650320 AT3G29035.1 53.333 165 75 1 1 165 16 178 1.99e-56 184
Msa0650320 AT3G15170.1 55.484 155 65 2 9 161 20 172 3.19e-56 183
Msa0650320 AT1G33280.1 51.190 168 72 2 3 167 2 162 1.77e-55 181
Msa0650320 AT1G65910.1 49.112 169 80 2 5 171 2 166 3.31e-55 188
Msa0650320 AT4G10350.1 40.833 240 123 5 1 235 1 226 3.32e-55 181
Msa0650320 AT5G53950.1 53.416 161 71 2 9 167 17 175 3.91e-55 182
Msa0650320 AT1G76420.1 53.503 157 62 3 9 161 22 171 1.81e-54 179
Msa0650320 AT1G62700.1 48.634 183 80 4 8 183 6 181 3.27e-54 180
Msa0650320 AT1G62700.2 48.634 183 80 4 8 183 6 181 3.27e-54 180
Msa0650320 AT5G39820.1 51.744 172 60 4 11 161 22 191 4.47e-54 178
Msa0650320 AT2G43000.1 46.500 200 89 3 11 210 20 201 5.65e-54 176
Msa0650320 AT5G17260.1 54.088 159 68 3 5 161 2 157 9.32e-54 181
Msa0650320 AT2G46770.1 44.091 220 103 6 8 207 15 234 1.44e-53 178
Msa0650320 AT5G18270.2 52.147 163 75 2 8 169 20 180 1.92e-53 176
Msa0650320 AT1G79580.3 52.532 158 64 3 9 162 17 167 2.10e-53 177
Msa0650320 AT1G79580.5 52.532 158 64 3 9 162 17 167 2.10e-53 177
Msa0650320 AT1G79580.4 52.532 158 64 3 9 162 17 167 2.10e-53 177
Msa0650320 AT1G79580.2 52.532 158 64 3 9 162 17 167 2.10e-53 177
Msa0650320 AT1G79580.1 52.532 158 64 3 9 162 17 167 2.10e-53 177
Msa0650320 AT3G04060.1 49.153 177 87 2 8 183 19 193 2.22e-53 176
Msa0650320 AT1G71930.2 47.561 164 77 2 1 161 1 158 3.37e-53 176
Msa0650320 AT1G71930.1 47.561 164 77 2 1 161 1 158 3.37e-53 176
Msa0650320 AT5G18270.1 51.534 163 76 2 8 169 20 180 4.89e-53 176
Msa0650320 AT3G03200.1 52.830 159 70 3 5 161 2 157 8.52e-53 179
Msa0650320 AT1G12260.2 50.955 157 68 2 9 162 7 157 1.80e-52 174
Msa0650320 AT1G26870.1 54.375 160 66 3 9 161 16 175 2.45e-52 176
Msa0650320 AT1G12260.1 50.955 157 68 2 9 162 7 157 3.34e-52 175
Msa0650320 AT3G12977.1 43.011 186 99 2 3 184 12 194 6.15e-52 171
Msa0650320 AT5G62380.2 45.876 194 83 4 1 180 1 186 9.16e-52 172
Msa0650320 AT5G62380.1 45.876 194 83 4 1 180 1 186 9.16e-52 172
Msa0650320 AT5G66300.1 47.273 165 79 2 1 162 4 163 1.49e-51 171
Msa0650320 AT1G54330.1 51.613 155 66 2 9 161 6 153 1.94e-51 170
Msa0650320 AT3G61910.1 41.014 217 104 5 8 207 10 219 3.53e-51 171
Msa0650320 AT1G56010.2 46.951 164 85 2 3 165 13 175 5.38e-51 170
Msa0650320 AT3G10480.1 50.314 159 74 2 9 165 27 182 8.69e-51 172
Msa0650320 AT2G02450.1 53.289 152 64 3 11 161 53 198 1.55e-50 170
Msa0650320 AT1G32770.1 47.024 168 80 2 8 166 15 182 1.62e-50 169
Msa0650320 AT2G02450.2 53.289 152 64 3 11 161 53 198 1.70e-50 171
Msa0650320 AT3G10480.2 50.943 159 72 3 9 165 27 181 2.23e-50 171
Msa0650320 AT5G46590.1 53.659 164 68 5 5 164 2 161 2.95e-50 167
Msa0650320 AT3G10490.1 47.879 165 81 3 3 165 21 182 6.99e-50 164
Msa0650320 AT2G17040.1 49.398 166 72 2 11 173 8 164 7.62e-49 163
Msa0650320 AT3G10500.1 47.904 167 81 2 1 165 1 163 1.55e-48 169
Msa0650320 AT5G46590.2 59.690 129 49 2 9 134 6 134 1.72e-48 162
Msa0650320 AT4G17980.1 51.572 159 67 4 9 161 6 160 3.06e-48 161
Msa0650320 AT4G17980.2 50.920 163 70 4 5 161 2 160 3.49e-48 162
Msa0650320 AT5G04410.1 48.503 167 80 3 1 165 1 163 7.90e-48 167
Msa0650320 AT3G10490.2 47.879 165 81 3 3 165 21 182 9.96e-48 164
Msa0650320 AT4G28530.1 44.767 172 69 3 8 161 9 172 1.77e-47 162
Msa0650320 AT4G35580.2 51.250 160 62 3 9 161 9 159 4.12e-47 164
Msa0650320 AT4G35580.3 51.250 160 62 3 9 161 9 159 4.45e-47 164
Msa0650320 AT4G35580.1 51.250 160 62 3 9 161 9 159 5.34e-47 164
Msa0650320 AT1G33060.1 40.598 234 121 5 9 230 24 251 1.99e-46 164
Msa0650320 AT1G33060.2 40.598 234 121 5 9 230 24 251 2.13e-46 164
Msa0650320 AT1G34180.3 47.205 161 71 3 11 165 18 170 2.40e-46 161
Msa0650320 AT1G32510.1 47.619 189 82 7 9 187 6 187 3.18e-46 156
Msa0650320 AT3G44290.2 47.531 162 72 3 11 170 16 166 4.62e-46 154
Msa0650320 AT2G27300.1 44.706 170 82 2 3 171 8 166 8.76e-46 157
Msa0650320 AT5G24590.2 48.521 169 76 4 1 164 5 167 9.09e-46 159
Msa0650320 AT3G10480.3 40.816 196 78 2 5 165 23 215 9.35e-46 161
Msa0650320 AT1G34180.1 47.205 161 71 3 11 165 18 170 1.38e-45 161
Msa0650320 AT3G44290.1 47.531 162 72 3 11 170 16 166 1.95e-45 156
Msa0650320 AT1G34190.1 45.963 161 73 3 11 165 18 170 2.43e-45 160
Msa0650320 AT5G22290.1 46.626 163 74 3 11 171 23 174 1.21e-44 154
Msa0650320 AT1G34180.4 43.353 173 72 3 11 165 18 182 3.87e-44 155
Msa0650320 AT1G34180.2 43.353 173 72 3 11 165 18 182 1.89e-43 155
Msa0650320 AT3G12910.1 48.780 164 70 5 11 161 23 185 6.86e-43 148
Msa0650320 AT5G64060.1 45.062 162 77 3 9 165 6 160 1.21e-42 149
Msa0650320 AT3G49530.2 46.341 164 71 4 9 164 13 167 1.52e-42 150
Msa0650320 AT3G49530.1 46.341 164 71 4 9 164 13 167 3.41e-42 150
Msa0650320 AT1G32870.2 49.375 160 73 4 9 165 10 164 1.04e-41 150
Msa0650320 AT1G32870.1 49.375 160 73 4 9 165 10 164 1.15e-41 150
Msa0650320 AT5G09330.5 46.296 162 77 3 8 165 5 160 1.19e-41 149
Msa0650320 AT5G09330.2 46.296 162 77 3 8 165 5 160 1.19e-41 149
Msa0650320 AT5G09330.4 46.296 162 77 3 8 165 5 160 1.19e-41 149
Msa0650320 AT5G09330.3 46.296 162 77 3 8 165 5 160 1.19e-41 149
Msa0650320 AT5G09330.1 46.296 162 77 3 8 165 5 160 1.19e-41 149
Msa0650320 AT1G32870.3 49.375 160 73 4 9 165 46 200 1.95e-41 150
Msa0650320 AT5G61430.2 53.153 111 50 1 58 168 2 110 1.04e-37 134
Msa0650320 AT4G10350.2 40.341 176 89 4 62 235 18 179 1.92e-35 129
Msa0650320 AT5G04395.1 44.595 148 66 3 3 134 22 169 2.69e-35 125
Msa0650320 AT1G56010.1 52.381 105 49 1 61 165 5 108 1.18e-34 125
Msa0650320 AT3G12977.2 43.704 135 69 2 54 184 10 141 1.29e-34 125
Msa0650320 AT2G33480.3 57.843 102 39 2 62 163 8 105 3.19e-34 123
Msa0650320 AT5G64530.1 38.788 165 77 4 9 161 3 155 4.87e-32 117
Msa0650320 AT5G64530.2 44.531 128 57 3 9 134 3 118 9.65e-32 115
Msa0650320 AT5G22380.1 40.252 159 86 5 8 159 4 160 1.15e-30 114
Msa0650320 AT4G28530.2 35.882 170 50 3 8 161 9 135 1.46e-30 116
Msa0650320 AT3G44350.2 37.059 170 98 5 8 171 4 170 3.33e-30 114
Msa0650320 AT4G01550.1 41.975 162 75 6 12 165 7 157 4.51e-29 115
Msa0650320 AT3G44350.1 41.791 134 72 3 8 135 4 137 1.55e-28 107
Msa0650320 AT3G04420.2 44.961 129 67 2 8 132 2 130 1.56e-28 110
Msa0650320 AT3G04420.1 44.961 129 67 2 8 132 2 130 2.84e-28 110
Msa0650320 AT2G43000.2 42.857 140 62 3 71 210 2 123 6.56e-27 103
Msa0650320 AT1G02230.1 46.154 130 60 6 10 132 4 130 1.66e-25 103
Msa0650320 AT4G01520.1 34.536 194 105 7 10 193 5 186 7.34e-25 100
Msa0650320 AT1G02220.1 42.636 129 67 3 8 132 2 127 2.99e-24 100
Msa0650320 AT4G01540.4 42.308 130 68 4 12 134 7 136 5.45e-24 100
Msa0650320 AT4G01540.3 42.308 130 68 4 12 134 7 136 6.39e-24 100
Msa0650320 AT4G01540.2 42.308 130 68 4 12 134 7 136 6.56e-24 100
Msa0650320 AT4G01540.1 42.308 130 68 4 12 134 7 136 8.45e-24 100
Msa0650320 AT5G14000.2 37.405 131 78 2 8 136 14 142 1.21e-22 91.7
Msa0650320 AT1G02250.1 43.846 130 63 5 10 132 4 130 1.37e-22 95.9
Msa0650320 AT2G18060.2 44.554 101 49 2 86 186 1 94 1.53e-22 94.4
Msa0650320 AT3G56530.1 35.065 154 91 3 9 159 52 199 1.77e-22 94.7
Msa0650320 AT5G14000.1 32.934 167 99 4 8 171 14 170 1.79e-22 92.4
Msa0650320 AT1G01010.1 37.654 162 72 7 12 158 6 153 1.51e-21 93.6
Msa0650320 AT3G10490.4 48.810 84 40 2 82 165 2 82 1.69e-21 92.8
Msa0650320 AT3G10490.3 48.810 84 40 2 82 165 2 82 1.69e-21 92.8
Msa0650320 AT5G50820.1 29.255 188 119 5 6 187 14 193 3.26e-21 89.0
Msa0650320 AT3G55210.1 33.333 165 88 4 9 159 11 167 7.71e-18 81.6
Msa0650320 AT5G22290.2 47.059 85 33 2 88 171 2 75 1.46e-17 80.1
Msa0650320 AT3G04430.1 35.878 131 70 5 15 132 6 135 2.71e-12 64.7
Msa0650320 AT5G18300.1 34.286 140 72 7 13 145 18 144 7.44e-12 62.4
Msa0650320 AT5G56620.3 32.258 155 73 7 9 134 43 194 2.44e-11 63.9
Msa0650320 AT5G56620.2 32.258 155 73 7 9 134 43 194 2.51e-11 63.9
Msa0650320 AT5G56620.1 32.258 155 73 7 9 134 43 194 2.53e-11 63.5
Msa0650320 AT4G29230.1 32.667 150 76 6 9 134 48 196 4.44e-11 63.2
Msa0650320 AT4G29230.2 32.667 150 76 6 9 134 47 195 4.47e-11 63.2
Msa0650320 AT4G29230.3 32.667 150 76 6 9 134 48 196 4.85e-11 63.2

Find 79 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTGTTTCACAAATAT+TGG 0.195650 4_3:+57141605 None:intergenic
CAAATCAACAATTCCAATAT+TGG 0.200100 4_3:-57141710 Msa0650320:CDS
AAAAGTGGATCAAAGCAAAT+TGG 0.239330 4_3:-57142338 Msa0650320:CDS
TTTGGGTACTTTCTTTCTCT+TGG 0.269227 4_3:+57142428 None:intergenic
GAGCAACTTTGTCTGGATAT+TGG 0.273149 4_3:-57142388 Msa0650320:CDS
TTGTTCACTTACTTATCTTT+TGG 0.277479 4_3:-57141783 Msa0650320:CDS
ATAGGGGTCAATTCCAATAT+TGG 0.285565 4_3:+57141697 None:intergenic
AATTTATAGATATCAACTTC+TGG 0.300371 4_3:+57142814 None:intergenic
CTAAAGCCAGGAGGGAGTTC+AGG 0.302552 4_3:+57142919 None:intergenic
AATCGAACTCGGTATCTATC+TGG 0.304798 4_3:-57141466 Msa0650320:three_prime_UTR
AATGCAGATAAATCTGAGTT+TGG 0.318833 4_3:-57142476 Msa0650320:intron
CCAGACAAAGTTGCTCTATT+AGG 0.328673 4_3:+57142395 None:intergenic
CTATTAGGCCTAACCCCATT+TGG 0.336706 4_3:+57142410 None:intergenic
TTGGGTACTTTCTTTCTCTT+GGG 0.351827 4_3:+57142429 None:intergenic
TTACTTTGGTCCAATCTTAT+CGG 0.353816 4_3:-57141753 Msa0650320:CDS
ATGCAGATAAATCTGAGTTT+GGG 0.362021 4_3:-57142475 Msa0650320:intron
ATGCATGAGTACAGATTGAT+TGG 0.383604 4_3:-57142251 Msa0650320:CDS
AAAGTGGATCAAAGCAAATT+GGG 0.388567 4_3:-57142337 Msa0650320:CDS
AATTGGGGTGAAGAAATCTT+TGG 0.390973 4_3:-57142321 Msa0650320:CDS
TATTAGGCCTAACCCCATTT+GGG 0.396297 4_3:+57142411 None:intergenic
TAATGATTGGTCATTTCAAC+TGG 0.399348 4_3:+57141662 None:intergenic
CCTAATAGAGCAACTTTGTC+TGG 0.401002 4_3:-57142395 Msa0650320:CDS
AAACAAACTAGCAAGCATAT+TGG 0.402864 4_3:-57142221 Msa0650320:CDS
ATTTATAGATATCAACTTCT+GGG 0.409565 4_3:+57142815 None:intergenic
CTTATCGGATGGTTCAACTT+TGG 0.411915 4_3:-57141738 Msa0650320:CDS
TTTCACAAATATTGGCTGAT+TGG 0.426611 4_3:+57141613 None:intergenic
TGATAATGTGACACATGAAA+AGG 0.437802 4_3:+57143021 None:intergenic
GAGAAAGAAAGTACCCAAAT+GGG 0.441206 4_3:-57142424 Msa0650320:CDS
AGAGAAAGAAAGTACCCAAA+TGG 0.452421 4_3:-57142425 Msa0650320:CDS
CAAAGGGTGTCAAAACTGAT+TGG 0.459054 4_3:-57142277 Msa0650320:CDS
CTGAGTTTGGGGAGAATGAA+TGG 0.459662 4_3:-57142463 Msa0650320:CDS
GTTGAACCATCCGATAAGAT+TGG 0.462661 4_3:+57141743 None:intergenic
GCAAGCCCTGAACTCCCTCC+TGG 0.468540 4_3:-57142925 Msa0650320:CDS
GGGATAATTGATGCAGGGCA+TGG 0.481397 4_3:+57142835 None:intergenic
TAAGTGAACAACTCCTTGTA+AGG 0.485477 4_3:+57141795 None:intergenic
ATATCTATAAATTTGATCCA+TGG 0.491707 4_3:-57142804 Msa0650320:CDS
TCTGGATATTGGAAAGCTAC+TGG 0.494091 4_3:-57142377 Msa0650320:CDS
TAAAGCCAGGAGGGAGTTCA+GGG 0.504659 4_3:+57142920 None:intergenic
GAGAGGAATTGAATTAATCA+AGG 0.505871 4_3:+57143066 None:intergenic
TATCTATAAATTTGATCCAT+GGG 0.513541 4_3:-57142803 Msa0650320:CDS
TTTGATCCATGGGAATTGCC+TGG 0.520646 4_3:-57142793 Msa0650320:intron
GTACAAGTGGTTGGTGCGTA+AGG 0.521287 4_3:+57141424 None:intergenic
TCTATAATAACTAATAATGA+TGG 0.526503 4_3:-57141836 Msa0650320:CDS
TGAATCTGCTTCATAATGAT+TGG 0.528337 4_3:+57141649 None:intergenic
ACTTCTGGGATAATTGATGC+AGG 0.531050 4_3:+57142829 None:intergenic
ATCGAACTCGGTATCTATCT+GGG 0.531066 4_3:-57141465 Msa0650320:three_prime_UTR
TTGGTCATTTCAACTGGCTG+AGG 0.532125 4_3:+57141668 None:intergenic
TTACAAGGGCAGGCCACCAA+AGG 0.537258 4_3:-57142294 Msa0650320:CDS
TTTGGTCCAATCTTATCGGA+TGG 0.538511 4_3:-57141749 Msa0650320:CDS
GTTGGATGAAATCTAAAGCC+AGG 0.547592 4_3:+57142907 None:intergenic
AAGAAATGATGAACCTTACA+AGG 0.553442 4_3:-57141808 Msa0650320:CDS
GATAATGTGACACATGAAAA+GGG 0.553951 4_3:+57143022 None:intergenic
TACAAGGGCAGGCCACCAAA+GGG 0.555341 4_3:-57142293 Msa0650320:CDS
GAAAGTACCCAAATGGGGTT+AGG 0.557007 4_3:-57142418 Msa0650320:CDS
ATGTGACACATGAAAAGGGA+TGG 0.568315 4_3:+57143026 None:intergenic
ACAATTAGTTCCTCATCAGT+TGG 0.571272 4_3:+57142889 None:intergenic
TAGATTTCATCCAACTGATG+AGG 0.573387 4_3:-57142899 Msa0650320:CDS
ATTAAAGGGATTTACCCTCA+TGG 0.588173 4_3:+57142196 None:intergenic
GTGTCATCAGCTAGATGACT+GGG 0.591677 4_3:-57141942 Msa0650320:intron
ACAGACAAGGCAATCAAAAG+TGG 0.595775 4_3:-57142353 Msa0650320:CDS
TATATACCAGGCAATTCCCA+TGG 0.600939 4_3:+57142787 None:intergenic
TGTGTCATCAGCTAGATGAC+TGG 0.610296 4_3:-57141943 Msa0650320:intron
GAAAGCTACTGGCACAGACA+AGG 0.610943 4_3:-57142366 Msa0650320:CDS
ATCTATAAGAAGAAGCACAT+GGG 0.628002 4_3:-57141908 Msa0650320:CDS
AAAGGGATGGAAAATTGAAG+TGG 0.629756 4_3:+57143039 None:intergenic
TGCAGATAAATCTGAGTTTG+GGG 0.637040 4_3:-57142474 Msa0650320:intron
CTTCTGGGATAATTGATGCA+GGG 0.642360 4_3:+57142830 None:intergenic
CAAGCATATTGGATCCATGA+GGG 0.642547 4_3:-57142210 Msa0650320:intron
TTGATGTAGCTTGATTACAA+AGG 0.644208 4_3:+57142860 None:intergenic
TTATTAGTAGGAATCGAACT+CGG 0.644447 4_3:-57141477 Msa0650320:three_prime_UTR
ACAGGACTAGTACAAGTGGT+TGG 0.648945 4_3:+57141415 None:intergenic
GATGAAATCTAAAGCCAGGA+GGG 0.652933 4_3:+57142911 None:intergenic
AAGTGGATCAAAGCAAATTG+GGG 0.655184 4_3:-57142336 Msa0650320:CDS
AAAATTGAAGTGGCTTCGAG+AGG 0.655924 4_3:+57143049 None:intergenic
GATCTATAAGAAGAAGCACA+TGG 0.656336 4_3:-57141909 Msa0650320:CDS
TATAACAGGACTAGTACAAG+TGG 0.658205 4_3:+57141411 None:intergenic
AGAAAGAAAGTACCCAAATG+GGG 0.672302 4_3:-57142423 Msa0650320:CDS
GCAAGCATATTGGATCCATG+AGG 0.703211 4_3:-57142211 Msa0650320:CDS
GGATGAAATCTAAAGCCAGG+AGG 0.707038 4_3:+57142910 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATCTTTTTTTTTATTAGT+AGG - chr4_3:57142994-57143013 Msa0650320:five_prime_UTR 10.0%
!!! ATATCTTTTTTTTTATTAGT+AGG - chr4_3:57142994-57143013 Msa0650320:five_prime_UTR 10.0%
!! ATTAATTGAGTCAAAAATAT+TGG + chr4_3:57141528-57141547 None:intergenic 15.0%
!!! AATATTTTTGACTCAATTAA+TGG - chr4_3:57141527-57141546 Msa0650320:three_prime_UTR 15.0%
!! TCTATAATAACTAATAATGA+TGG - chr4_3:57142647-57142666 Msa0650320:intron 15.0%
!! ATTAATTGAGTCAAAAATAT+TGG + chr4_3:57141528-57141547 None:intergenic 15.0%
!!! AATATTTTTGACTCAATTAA+TGG - chr4_3:57141527-57141546 Msa0650320:three_prime_UTR 15.0%
!! TCTATAATAACTAATAATGA+TGG - chr4_3:57142647-57142666 Msa0650320:intron 15.0%
!! ATTTATAGATATCAACTTCT+GGG + chr4_3:57141671-57141690 None:intergenic 20.0%
!! AATTTATAGATATCAACTTC+TGG + chr4_3:57141672-57141691 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr4_3:57141679-57141698 Msa0650320:CDS 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr4_3:57141680-57141699 Msa0650320:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG + chr4_3:57141711-57141730 None:intergenic 20.0%
!! ATTTATCTGCATTCTATAAT+TGG + chr4_3:57142000-57142019 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG + chr4_3:57142319-57142338 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+TGG + chr4_3:57142399-57142418 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG - chr4_3:57142458-57142477 Msa0650320:CDS 20.0%
!! AAAATAAACACCTAAAATTC+AGG + chr4_3:57142471-57142490 None:intergenic 20.0%
!! ATTTATAGATATCAACTTCT+GGG + chr4_3:57141671-57141690 None:intergenic 20.0%
!! AATTTATAGATATCAACTTC+TGG + chr4_3:57141672-57141691 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr4_3:57141679-57141698 Msa0650320:CDS 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr4_3:57141680-57141699 Msa0650320:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG + chr4_3:57141711-57141730 None:intergenic 20.0%
!! ATTTATCTGCATTCTATAAT+TGG + chr4_3:57142000-57142019 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG + chr4_3:57142319-57142338 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+TGG + chr4_3:57142399-57142418 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG - chr4_3:57142458-57142477 Msa0650320:CDS 20.0%
!! AAAATAAACACCTAAAATTC+AGG + chr4_3:57142471-57142490 None:intergenic 20.0%
! TTGGTACTAATTTGAGAAAA+TGG - chr4_3:57141865-57141884 Msa0650320:CDS 25.0%
! TAGTACCTAATAAAAAACGA+AGG + chr4_3:57141976-57141995 None:intergenic 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG - chr4_3:57142175-57142194 Msa0650320:intron 25.0%
! AAAATAGGCCAATGATTAAA+GGG + chr4_3:57142304-57142323 None:intergenic 25.0%
!! TTGTTCACTTACTTATCTTT+TGG - chr4_3:57142700-57142719 Msa0650320:intron 25.0%
!! CTTTTGGATATGAATTACTT+TGG - chr4_3:57142716-57142735 Msa0650320:intron 25.0%
! CAAATCAACAATTCCAATAT+TGG - chr4_3:57142773-57142792 Msa0650320:intron 25.0%
! TGCATTTGTTTCACAAATAT+TGG + chr4_3:57142881-57142900 None:intergenic 25.0%
! TTGGTACTAATTTGAGAAAA+TGG - chr4_3:57141865-57141884 Msa0650320:CDS 25.0%
! TAGTACCTAATAAAAAACGA+AGG + chr4_3:57141976-57141995 None:intergenic 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG - chr4_3:57142175-57142194 Msa0650320:intron 25.0%
! AAAATAGGCCAATGATTAAA+GGG + chr4_3:57142304-57142323 None:intergenic 25.0%
!! TTGTTCACTTACTTATCTTT+TGG - chr4_3:57142700-57142719 Msa0650320:intron 25.0%
!! CTTTTGGATATGAATTACTT+TGG - chr4_3:57142716-57142735 Msa0650320:intron 25.0%
! CAAATCAACAATTCCAATAT+TGG - chr4_3:57142773-57142792 Msa0650320:intron 25.0%
! TGCATTTGTTTCACAAATAT+TGG + chr4_3:57142881-57142900 None:intergenic 25.0%
GAGAGGAATTGAATTAATCA+AGG + chr4_3:57141420-57141439 None:intergenic 30.0%
GATAATGTGACACATGAAAA+GGG + chr4_3:57141464-57141483 None:intergenic 30.0%
! TGATAATGTGACACATGAAA+AGG + chr4_3:57141465-57141484 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG + chr4_3:57141626-57141645 None:intergenic 30.0%
CTCAAATTAGTACCAATGTT+TGG + chr4_3:57141861-57141880 None:intergenic 30.0%
!!! TGTCTCCTTCGTTTTTTATT+AGG - chr4_3:57141968-57141987 Msa0650320:intron 30.0%
AATGCAGATAAATCTGAGTT+TGG - chr4_3:57142007-57142026 Msa0650320:intron 30.0%
ATGCAGATAAATCTGAGTTT+GGG - chr4_3:57142008-57142027 Msa0650320:intron 30.0%
AAAAGTGGATCAAAGCAAAT+TGG - chr4_3:57142145-57142164 Msa0650320:intron 30.0%
AAAGTGGATCAAAGCAAATT+GGG - chr4_3:57142146-57142165 Msa0650320:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG - chr4_3:57142174-57142193 Msa0650320:intron 30.0%
AAACAAACTAGCAAGCATAT+TGG - chr4_3:57142262-57142281 Msa0650320:CDS 30.0%
CAAAATAGGCCAATGATTAA+AGG + chr4_3:57142305-57142324 None:intergenic 30.0%
! ACTATGACATGGAAACTTTT+TGG + chr4_3:57142388-57142407 None:intergenic 30.0%
! ATCTATAAGAAGAAGCACAT+GGG - chr4_3:57142575-57142594 Msa0650320:intron 30.0%
AAAAACATTGCAGCAAAAAG+AGG - chr4_3:57142598-57142617 Msa0650320:intron 30.0%
AAGAAATGATGAACCTTACA+AGG - chr4_3:57142675-57142694 Msa0650320:intron 30.0%
TTACTTTGGTCCAATCTTAT+CGG - chr4_3:57142730-57142749 Msa0650320:intron 30.0%
! TAATGATTGGTCATTTCAAC+TGG + chr4_3:57142824-57142843 None:intergenic 30.0%
TGAATCTGCTTCATAATGAT+TGG + chr4_3:57142837-57142856 None:intergenic 30.0%
! TTTCACAAATATTGGCTGAT+TGG + chr4_3:57142873-57142892 None:intergenic 30.0%
TTATTAGTAGGAATCGAACT+CGG - chr4_3:57143006-57143025 Msa0650320:five_prime_UTR 30.0%
GAGAGGAATTGAATTAATCA+AGG + chr4_3:57141420-57141439 None:intergenic 30.0%
GATAATGTGACACATGAAAA+GGG + chr4_3:57141464-57141483 None:intergenic 30.0%
! TGATAATGTGACACATGAAA+AGG + chr4_3:57141465-57141484 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG + chr4_3:57141626-57141645 None:intergenic 30.0%
CTCAAATTAGTACCAATGTT+TGG + chr4_3:57141861-57141880 None:intergenic 30.0%
!!! TGTCTCCTTCGTTTTTTATT+AGG - chr4_3:57141968-57141987 Msa0650320:intron 30.0%
AATGCAGATAAATCTGAGTT+TGG - chr4_3:57142007-57142026 Msa0650320:intron 30.0%
ATGCAGATAAATCTGAGTTT+GGG - chr4_3:57142008-57142027 Msa0650320:intron 30.0%
AAAAGTGGATCAAAGCAAAT+TGG - chr4_3:57142145-57142164 Msa0650320:intron 30.0%
AAAGTGGATCAAAGCAAATT+GGG - chr4_3:57142146-57142165 Msa0650320:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG - chr4_3:57142174-57142193 Msa0650320:intron 30.0%
AAACAAACTAGCAAGCATAT+TGG - chr4_3:57142262-57142281 Msa0650320:CDS 30.0%
CAAAATAGGCCAATGATTAA+AGG + chr4_3:57142305-57142324 None:intergenic 30.0%
! ACTATGACATGGAAACTTTT+TGG + chr4_3:57142388-57142407 None:intergenic 30.0%
! ATCTATAAGAAGAAGCACAT+GGG - chr4_3:57142575-57142594 Msa0650320:intron 30.0%
AAAAACATTGCAGCAAAAAG+AGG - chr4_3:57142598-57142617 Msa0650320:intron 30.0%
AAGAAATGATGAACCTTACA+AGG - chr4_3:57142675-57142694 Msa0650320:intron 30.0%
TTACTTTGGTCCAATCTTAT+CGG - chr4_3:57142730-57142749 Msa0650320:intron 30.0%
! TAATGATTGGTCATTTCAAC+TGG + chr4_3:57142824-57142843 None:intergenic 30.0%
TGAATCTGCTTCATAATGAT+TGG + chr4_3:57142837-57142856 None:intergenic 30.0%
! TTTCACAAATATTGGCTGAT+TGG + chr4_3:57142873-57142892 None:intergenic 30.0%
TTATTAGTAGGAATCGAACT+CGG - chr4_3:57143006-57143025 Msa0650320:five_prime_UTR 30.0%
AAAGGGATGGAAAATTGAAG+TGG + chr4_3:57141447-57141466 None:intergenic 35.0%
TAGATTTCATCCAACTGATG+AGG - chr4_3:57141584-57141603 Msa0650320:exon 35.0%
ACAATTAGTTCCTCATCAGT+TGG + chr4_3:57141597-57141616 None:intergenic 35.0%
TCTCATGTTTGTGTCTATGT+TGG + chr4_3:57141825-57141844 None:intergenic 35.0%
ATGACGCTAAAACCAAACAT+TGG - chr4_3:57141846-57141865 Msa0650320:CDS 35.0%
! TTTAAGTTAGTGACGTGTAC+TGG - chr4_3:57141907-57141926 Msa0650320:CDS 35.0%
TGCAGATAAATCTGAGTTTG+GGG - chr4_3:57142009-57142028 Msa0650320:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG + chr4_3:57142057-57142076 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG + chr4_3:57142058-57142077 None:intergenic 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG - chr4_3:57142058-57142077 Msa0650320:intron 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG - chr4_3:57142059-57142078 Msa0650320:intron 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG - chr4_3:57142060-57142079 Msa0650320:intron 35.0%
AAGTGGATCAAAGCAAATTG+GGG - chr4_3:57142147-57142166 Msa0650320:intron 35.0%
AATTGGGGTGAAGAAATCTT+TGG - chr4_3:57142162-57142181 Msa0650320:intron 35.0%
ATGCATGAGTACAGATTGAT+TGG - chr4_3:57142232-57142251 Msa0650320:CDS 35.0%
ATTAAAGGGATTTACCCTCA+TGG + chr4_3:57142290-57142309 None:intergenic 35.0%
GGGTAAATCCCTTTAATCAT+TGG - chr4_3:57142293-57142312 Msa0650320:CDS 35.0%
! GCAAAACTGTTTTACACTGA+CGG - chr4_3:57142429-57142448 Msa0650320:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG - chr4_3:57142512-57142531 Msa0650320:intron 35.0%
! GATCTATAAGAAGAAGCACA+TGG - chr4_3:57142574-57142593 Msa0650320:intron 35.0%
TAAGTGAACAACTCCTTGTA+AGG + chr4_3:57142691-57142710 None:intergenic 35.0%
ATAGGGGTCAATTCCAATAT+TGG + chr4_3:57142789-57142808 None:intergenic 35.0%
AAAGGGATGGAAAATTGAAG+TGG + chr4_3:57141447-57141466 None:intergenic 35.0%
TAGATTTCATCCAACTGATG+AGG - chr4_3:57141584-57141603 Msa0650320:exon 35.0%
ACAATTAGTTCCTCATCAGT+TGG + chr4_3:57141597-57141616 None:intergenic 35.0%
TCTCATGTTTGTGTCTATGT+TGG + chr4_3:57141825-57141844 None:intergenic 35.0%
ATGACGCTAAAACCAAACAT+TGG - chr4_3:57141846-57141865 Msa0650320:CDS 35.0%
! TTTAAGTTAGTGACGTGTAC+TGG - chr4_3:57141907-57141926 Msa0650320:CDS 35.0%
TGCAGATAAATCTGAGTTTG+GGG - chr4_3:57142009-57142028 Msa0650320:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG + chr4_3:57142057-57142076 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG + chr4_3:57142058-57142077 None:intergenic 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG - chr4_3:57142058-57142077 Msa0650320:intron 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG - chr4_3:57142059-57142078 Msa0650320:intron 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG - chr4_3:57142060-57142079 Msa0650320:intron 35.0%
AAGTGGATCAAAGCAAATTG+GGG - chr4_3:57142147-57142166 Msa0650320:intron 35.0%
AATTGGGGTGAAGAAATCTT+TGG - chr4_3:57142162-57142181 Msa0650320:intron 35.0%
ATGCATGAGTACAGATTGAT+TGG - chr4_3:57142232-57142251 Msa0650320:CDS 35.0%
ATTAAAGGGATTTACCCTCA+TGG + chr4_3:57142290-57142309 None:intergenic 35.0%
GGGTAAATCCCTTTAATCAT+TGG - chr4_3:57142293-57142312 Msa0650320:CDS 35.0%
! GCAAAACTGTTTTACACTGA+CGG - chr4_3:57142429-57142448 Msa0650320:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG - chr4_3:57142512-57142531 Msa0650320:intron 35.0%
! GATCTATAAGAAGAAGCACA+TGG - chr4_3:57142574-57142593 Msa0650320:intron 35.0%
TAAGTGAACAACTCCTTGTA+AGG + chr4_3:57142691-57142710 None:intergenic 35.0%
ATAGGGGTCAATTCCAATAT+TGG + chr4_3:57142789-57142808 None:intergenic 35.0%
AAAATTGAAGTGGCTTCGAG+AGG + chr4_3:57141437-57141456 None:intergenic 40.0%
ATGTGACACATGAAAAGGGA+TGG + chr4_3:57141460-57141479 None:intergenic 40.0%
! GATGAAATCTAAAGCCAGGA+GGG + chr4_3:57141575-57141594 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG + chr4_3:57141579-57141598 None:intergenic 40.0%
!! CTTCTGGGATAATTGATGCA+GGG + chr4_3:57141656-57141675 None:intergenic 40.0%
!! ACTTCTGGGATAATTGATGC+AGG + chr4_3:57141657-57141676 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG + chr4_3:57141699-57141718 None:intergenic 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG - chr4_3:57141932-57141951 Msa0650320:CDS 40.0%
TATTAGGCCTAACCCCATTT+GGG + chr4_3:57142075-57142094 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG + chr4_3:57142091-57142110 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG - chr4_3:57142088-57142107 Msa0650320:intron 40.0%
GAGCAACTTTGTCTGGATAT+TGG - chr4_3:57142095-57142114 Msa0650320:intron 40.0%
TCTGGATATTGGAAAGCTAC+TGG - chr4_3:57142106-57142125 Msa0650320:intron 40.0%
ACAGACAAGGCAATCAAAAG+TGG - chr4_3:57142130-57142149 Msa0650320:intron 40.0%
!! CAATCAGTTTTGACACCCTT+TGG + chr4_3:57142208-57142227 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG - chr4_3:57142206-57142225 Msa0650320:intron 40.0%
CAAGCATATTGGATCCATGA+GGG - chr4_3:57142273-57142292 Msa0650320:CDS 40.0%
CACATACAACCACAAAGGAA+AGG + chr4_3:57142524-57142543 None:intergenic 40.0%
GATGACACATACAACCACAA+AGG + chr4_3:57142529-57142548 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG - chr4_3:57142552-57142571 Msa0650320:intron 40.0%
TTTGGTCCAATCTTATCGGA+TGG - chr4_3:57142734-57142753 Msa0650320:intron 40.0%
GTTGAACCATCCGATAAGAT+TGG + chr4_3:57142743-57142762 None:intergenic 40.0%
CTTATCGGATGGTTCAACTT+TGG - chr4_3:57142745-57142764 Msa0650320:intron 40.0%
! ACTGGCTGAGGTTTTACATA+GGG + chr4_3:57142806-57142825 None:intergenic 40.0%
! AACTGGCTGAGGTTTTACAT+AGG + chr4_3:57142807-57142826 None:intergenic 40.0%
AATCGAACTCGGTATCTATC+TGG - chr4_3:57143017-57143036 Msa0650320:five_prime_UTR 40.0%
ATCGAACTCGGTATCTATCT+GGG - chr4_3:57143018-57143037 Msa0650320:five_prime_UTR 40.0%
AAAATTGAAGTGGCTTCGAG+AGG + chr4_3:57141437-57141456 None:intergenic 40.0%
ATGTGACACATGAAAAGGGA+TGG + chr4_3:57141460-57141479 None:intergenic 40.0%
! GATGAAATCTAAAGCCAGGA+GGG + chr4_3:57141575-57141594 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG + chr4_3:57141579-57141598 None:intergenic 40.0%
!! CTTCTGGGATAATTGATGCA+GGG + chr4_3:57141656-57141675 None:intergenic 40.0%
!! ACTTCTGGGATAATTGATGC+AGG + chr4_3:57141657-57141676 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG + chr4_3:57141699-57141718 None:intergenic 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG - chr4_3:57141932-57141951 Msa0650320:CDS 40.0%
TATTAGGCCTAACCCCATTT+GGG + chr4_3:57142075-57142094 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG + chr4_3:57142091-57142110 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG - chr4_3:57142088-57142107 Msa0650320:intron 40.0%
GAGCAACTTTGTCTGGATAT+TGG - chr4_3:57142095-57142114 Msa0650320:intron 40.0%
TCTGGATATTGGAAAGCTAC+TGG - chr4_3:57142106-57142125 Msa0650320:intron 40.0%
ACAGACAAGGCAATCAAAAG+TGG - chr4_3:57142130-57142149 Msa0650320:intron 40.0%
!! CAATCAGTTTTGACACCCTT+TGG + chr4_3:57142208-57142227 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG - chr4_3:57142206-57142225 Msa0650320:intron 40.0%
CAAGCATATTGGATCCATGA+GGG - chr4_3:57142273-57142292 Msa0650320:CDS 40.0%
CACATACAACCACAAAGGAA+AGG + chr4_3:57142524-57142543 None:intergenic 40.0%
GATGACACATACAACCACAA+AGG + chr4_3:57142529-57142548 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG - chr4_3:57142552-57142571 Msa0650320:intron 40.0%
TTTGGTCCAATCTTATCGGA+TGG - chr4_3:57142734-57142753 Msa0650320:intron 40.0%
GTTGAACCATCCGATAAGAT+TGG + chr4_3:57142743-57142762 None:intergenic 40.0%
CTTATCGGATGGTTCAACTT+TGG - chr4_3:57142745-57142764 Msa0650320:intron 40.0%
! ACTGGCTGAGGTTTTACATA+GGG + chr4_3:57142806-57142825 None:intergenic 40.0%
! AACTGGCTGAGGTTTTACAT+AGG + chr4_3:57142807-57142826 None:intergenic 40.0%
AATCGAACTCGGTATCTATC+TGG - chr4_3:57143017-57143036 Msa0650320:five_prime_UTR 40.0%
ATCGAACTCGGTATCTATCT+GGG - chr4_3:57143018-57143037 Msa0650320:five_prime_UTR 40.0%
! GGATGAAATCTAAAGCCAGG+AGG + chr4_3:57141576-57141595 None:intergenic 45.0%
TTTGATCCATGGGAATTGCC+TGG - chr4_3:57141690-57141709 Msa0650320:CDS 45.0%
CTGAGTTTGGGGAGAATGAA+TGG - chr4_3:57142020-57142039 Msa0650320:intron 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG - chr4_3:57142065-57142084 Msa0650320:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG + chr4_3:57142076-57142095 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG - chr4_3:57142179-57142198 Msa0650320:intron 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG + chr4_3:57142205-57142224 None:intergenic 45.0%
GCAAGCATATTGGATCCATG+AGG - chr4_3:57142272-57142291 Msa0650320:CDS 45.0%
TGTGTCATCAGCTAGATGAC+TGG - chr4_3:57142540-57142559 Msa0650320:intron 45.0%
GTGTCATCAGCTAGATGACT+GGG - chr4_3:57142541-57142560 Msa0650320:intron 45.0%
! CTGGCTGAGGTTTTACATAG+GGG + chr4_3:57142805-57142824 None:intergenic 45.0%
TTGGTCATTTCAACTGGCTG+AGG + chr4_3:57142818-57142837 None:intergenic 45.0%
! ACAGGACTAGTACAAGTGGT+TGG + chr4_3:57143071-57143090 None:intergenic 45.0%
! GGATGAAATCTAAAGCCAGG+AGG + chr4_3:57141576-57141595 None:intergenic 45.0%
TTTGATCCATGGGAATTGCC+TGG - chr4_3:57141690-57141709 Msa0650320:CDS 45.0%
CTGAGTTTGGGGAGAATGAA+TGG - chr4_3:57142020-57142039 Msa0650320:intron 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG - chr4_3:57142065-57142084 Msa0650320:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG + chr4_3:57142076-57142095 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG - chr4_3:57142179-57142198 Msa0650320:intron 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG + chr4_3:57142205-57142224 None:intergenic 45.0%
GCAAGCATATTGGATCCATG+AGG - chr4_3:57142272-57142291 Msa0650320:CDS 45.0%
TGTGTCATCAGCTAGATGAC+TGG - chr4_3:57142540-57142559 Msa0650320:intron 45.0%
GTGTCATCAGCTAGATGACT+GGG - chr4_3:57142541-57142560 Msa0650320:intron 45.0%
! CTGGCTGAGGTTTTACATAG+GGG + chr4_3:57142805-57142824 None:intergenic 45.0%
TTGGTCATTTCAACTGGCTG+AGG + chr4_3:57142818-57142837 None:intergenic 45.0%
! ACAGGACTAGTACAAGTGGT+TGG + chr4_3:57143071-57143090 None:intergenic 45.0%
TAAAGCCAGGAGGGAGTTCA+GGG + chr4_3:57141566-57141585 None:intergenic 50.0%
GGGATAATTGATGCAGGGCA+TGG + chr4_3:57141651-57141670 None:intergenic 50.0%
GAAAGCTACTGGCACAGACA+AGG - chr4_3:57142117-57142136 Msa0650320:intron 50.0%
! GTACAAGTGGTTGGTGCGTA+AGG + chr4_3:57143062-57143081 None:intergenic 50.0%
TAAAGCCAGGAGGGAGTTCA+GGG + chr4_3:57141566-57141585 None:intergenic 50.0%
GGGATAATTGATGCAGGGCA+TGG + chr4_3:57141651-57141670 None:intergenic 50.0%
GAAAGCTACTGGCACAGACA+AGG - chr4_3:57142117-57142136 Msa0650320:intron 50.0%
! GTACAAGTGGTTGGTGCGTA+AGG + chr4_3:57143062-57143081 None:intergenic 50.0%
CTAAAGCCAGGAGGGAGTTC+AGG + chr4_3:57141567-57141586 None:intergenic 55.0%
TTACAAGGGCAGGCCACCAA+AGG - chr4_3:57142189-57142208 Msa0650320:intron 55.0%
TACAAGGGCAGGCCACCAAA+GGG - chr4_3:57142190-57142209 Msa0650320:intron 55.0%
CTAAAGCCAGGAGGGAGTTC+AGG + chr4_3:57141567-57141586 None:intergenic 55.0%
TTACAAGGGCAGGCCACCAA+AGG - chr4_3:57142189-57142208 Msa0650320:intron 55.0%
TACAAGGGCAGGCCACCAAA+GGG - chr4_3:57142190-57142209 Msa0650320:intron 55.0%
GCAAGCCCTGAACTCCCTCC+TGG - chr4_3:57141558-57141577 Msa0650320:three_prime_UTR 65.0%
GCAAGCCCTGAACTCCCTCC+TGG - chr4_3:57141558-57141577 Msa0650320:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 57141412 57143093 57141412 ID=Msa0650320;Name=Msa0650320
chr4_3 mRNA 57141412 57143093 57141412 ID=Msa0650320-mRNA-1;Parent=Msa0650320;Name=Msa0650320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=134|1|1|1|1|1|3|177|270
chr4_3 exon 57141412 57141954 57141412 ID=Msa0650320-mRNA-1:exon:15035;Parent=Msa0650320-mRNA-1
chr4_3 exon 57142211 57142491 57142211 ID=Msa0650320-mRNA-1:exon:15034;Parent=Msa0650320-mRNA-1
chr4_3 exon 57142794 57143093 57142794 ID=Msa0650320-mRNA-1:exon:15033;Parent=Msa0650320-mRNA-1
chr4_3 five_prime_UTR 57142960 57143093 57142960 ID=Msa0650320-mRNA-1:five_prime_utr;Parent=Msa0650320-mRNA-1
chr4_3 CDS 57142794 57142959 57142794 ID=Msa0650320-mRNA-1:cds;Parent=Msa0650320-mRNA-1
chr4_3 CDS 57142211 57142491 57142211 ID=Msa0650320-mRNA-1:cds;Parent=Msa0650320-mRNA-1
chr4_3 CDS 57141589 57141954 57141589 ID=Msa0650320-mRNA-1:cds;Parent=Msa0650320-mRNA-1
chr4_3 three_prime_UTR 57141412 57141588 57141412 ID=Msa0650320-mRNA-1:three_prime_utr;Parent=Msa0650320-mRNA-1
Gene Sequence

>Msa0650320

ATGGAGAGTAGTGCAAGCCCTGAACTCCCTCCTGGCTTTAGATTTCATCCAACTGATGAGGAACTAATTGTGCATTACCTTTGTAATCAAGCTACATCAAAGCCATGCCCTGCATCAATTATCCCAGAAGTTGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAATCTGAGTTTGGGGAGAATGAATGGTATTTCTTTAGCCCAAGAGAAAGAAAGTACCCAAATGGGGTTAGGCCTAATAGAGCAACTTTGTCTGGATATTGGAAAGCTACTGGCACAGACAAGGCAATCAAAAGTGGATCAAAGCAAATTGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGCAGGCCACCAAAGGGTGTCAAAACTGATTGGATTATGCATGAGTACAGATTGATTGGATCACAAAAACAAACTAGCAAGCATATTGGATCCATGAGGCTAGATGACTGGGTTTTATGCAGGATCTATAAGAAGAAGCACATGGGAAAAACATTGCAGCAAAAAGAGGACTATTCAACACATCAATTTAATGATTCTATAATAACTAATAATGATGGTGAACAAGAAATGATGAACCTTACAAGGAGTTGTTCACTTACTTATCTTTTGGATATGAATTACTTTGGTCCAATCTTATCGGATGGTTCAACTTTGGATTTTCAAATCAACAATTCCAATATTGGAATTGACCCCTATGTAAAACCTCAGCCAGTTGAAATGACCAATCATTATGAAGCAGATTCACATAGTAGCATCACCAATCAGCCAATATTTGTGAAACAAATGCATAATTATTTAGCATAA
Protein sequence

>Msa0650320

MESSASPELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFGENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHMGKTLQQKEDYSTHQFNDSIITNNDGEQEMMNLTRSCSLTYLLDMNYFGPILSDGSTLDFQINNSNIGIDPYVKPQPVEMTNHYEADSHSSITNQPIFVKQMHNYLA*