AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0692320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692320 MtrunA17_Chr4g0042561 97.794 272 4 2 1 271 1 271 0.0 551
Msa0692320 MtrunA17_Chr5g0417791 70.930 258 64 5 8 259 2 254 1.22e-130 370
Msa0692320 MtrunA17_Chr2g0326361 68.263 167 51 1 9 173 14 180 3.84e-82 249
Msa0692320 MtrunA17_Chr7g0263931 62.766 188 61 3 8 188 10 195 6.77e-81 246
Msa0692320 MtrunA17_Chr7g0252971 54.468 235 84 6 9 220 8 242 4.65e-80 244
Msa0692320 MtrunA17_Chr2g0318101 61.878 181 58 3 4 173 10 190 1.03e-79 244
Msa0692320 MtrunA17_Chr4g0047841 64.804 179 42 3 4 161 10 188 2.14e-78 241
Msa0692320 MtrunA17_Chr8g0384721 64.516 155 54 1 8 162 6 159 4.58e-73 225
Msa0692320 MtrunA17_Chr3g0124761 65.161 155 52 2 8 162 6 158 5.13e-72 223
Msa0692320 MtrunA17_Chr2g0318081 63.694 157 53 1 5 161 12 164 2.91e-71 223
Msa0692320 MtrunA17_Chr8g0359921 47.431 253 115 6 9 254 14 255 3.78e-71 221
Msa0692320 MtrunA17_Chr3g0130731 63.226 155 55 2 8 162 6 158 1.31e-68 214
Msa0692320 MtrunA17_Chr6g0484441 46.190 210 101 2 9 212 5 208 2.85e-60 194
Msa0692320 MtrunA17_Chr2g0309891 57.419 155 61 3 9 161 6 157 9.01e-60 193
Msa0692320 MtrunA17_Chr4g0060931 54.717 159 70 1 8 166 16 172 3.72e-59 192
Msa0692320 MtrunA17_Chr6g0481091 46.231 199 97 5 9 201 6 200 1.09e-58 187
Msa0692320 MtrunA17_Chr6g0453451 51.786 168 79 1 1 168 12 177 1.21e-58 189
Msa0692320 MtrunA17_Chr2g0309331 47.644 191 90 3 1 187 2 186 3.17e-58 189
Msa0692320 MtrunA17_Chr7g0214071 59.119 159 54 3 9 165 15 164 8.26e-58 185
Msa0692320 MtrunA17_Chr3g0091921 55.696 158 68 1 9 166 16 171 2.16e-57 186
Msa0692320 MtrunA17_Chr8g0361731 49.738 191 83 5 11 190 16 204 2.79e-57 188
Msa0692320 MtrunA17_Chr4g0017921 39.493 276 143 7 3 266 2 265 1.30e-56 185
Msa0692320 MtrunA17_Chr3g0139331 52.941 170 70 3 1 166 1 164 3.76e-56 184
Msa0692320 MtrunA17_Chr5g0417001 54.658 161 63 3 11 163 16 174 4.43e-56 184
Msa0692320 MtrunA17_Chr6g0453131 45.673 208 105 4 1 202 7 212 7.10e-56 184
Msa0692320 MtrunA17_Chr2g0316971 54.088 159 69 2 9 165 23 179 1.62e-55 183
Msa0692320 MtrunA17_Chr1g0200561 53.846 156 63 3 9 161 19 168 5.67e-55 181
Msa0692320 MtrunA17_Chr4g0056541 47.486 179 85 2 9 184 7 179 5.83e-55 181
Msa0692320 MtrunA17_Chr4g0018391 51.592 157 67 2 9 162 7 157 2.26e-54 179
Msa0692320 MtrunA17_Chr5g0405211 50.955 157 68 2 9 162 8 158 6.34e-54 178
Msa0692320 MtrunA17_Chr8g0346001 43.541 209 104 5 4 201 10 215 6.90e-54 180
Msa0692320 MtrunA17_Chr5g0433781 54.088 159 67 2 5 161 2 156 8.85e-54 184
Msa0692320 MtrunA17_Chr3g0109821 54.088 159 68 3 5 161 2 157 1.75e-53 184
Msa0692320 MtrunA17_Chr7g0253011 53.165 158 68 2 8 161 16 171 2.49e-53 177
Msa0692320 MtrunA17_Chr1g0147421 53.659 164 61 5 9 166 27 181 1.11e-52 175
Msa0692320 MtrunA17_Chr8g0372121 49.045 157 71 2 9 162 6 156 2.82e-52 172
Msa0692320 MtrunA17_Chr5g0398971 49.112 169 76 4 9 173 7 169 4.73e-52 173
Msa0692320 MtrunA17_Chr7g0217721 46.286 175 79 2 8 169 18 190 6.91e-51 170
Msa0692320 MtrunA17_Chr6g0461661 39.163 263 134 8 8 262 17 261 7.55e-51 171
Msa0692320 MtrunA17_Chr5g0442771 51.572 159 69 3 11 161 20 178 1.59e-50 168
Msa0692320 MtrunA17_Chr8g0385991 50.311 161 73 4 9 165 14 171 1.10e-49 163
Msa0692320 MtrunA17_Chr4g0076731 51.316 152 67 3 11 161 56 201 1.61e-49 169
Msa0692320 MtrunA17_Chr7g0261411 44.828 174 86 3 9 180 10 175 2.48e-49 164
Msa0692320 MtrunA17_Chr2g0312321 48.428 159 77 3 3 161 5 158 2.91e-49 164
Msa0692320 MtrunA17_Chr1g0183741 47.205 161 72 4 9 167 10 159 4.82e-49 163
Msa0692320 MtrunA17_Chr2g0311651 50.920 163 68 5 11 161 24 186 2.16e-48 162
Msa0692320 MtrunA17_Chr5g0400461 50.000 164 66 3 9 163 6 162 9.31e-48 161
Msa0692320 MtrunA17_Chr3g0131911 51.553 161 70 3 8 162 13 171 4.02e-47 157
Msa0692320 MtrunA17_Chr2g0311661 51.220 164 66 4 11 161 23 185 4.89e-47 158
Msa0692320 MtrunA17_Chr3g0144271 58.140 129 51 2 9 134 23 151 7.20e-47 161
Msa0692320 MtrunA17_Chr1g0197351 49.689 161 77 2 9 165 42 202 1.31e-46 162
Msa0692320 MtrunA17_Chr5g0428991 52.201 159 66 3 8 162 24 176 1.63e-46 164
Msa0692320 MtrunA17_Chr4g0054791 49.398 166 73 4 9 168 6 166 2.44e-46 157
Msa0692320 MtrunA17_Chr7g0217711 54.264 129 59 0 8 136 18 146 6.86e-46 152
Msa0692320 MtrunA17_Chr4g0038751 48.171 164 73 2 11 171 17 171 1.22e-45 155
Msa0692320 MtrunA17_Chr1g0201021 47.134 157 77 2 11 165 21 173 2.61e-45 160
Msa0692320 MtrunA17_Chr3g0128151 50.955 157 67 3 9 161 22 172 9.67e-45 159
Msa0692320 MtrunA17_Chr3g0092671 48.428 159 72 5 11 165 7 159 2.38e-44 157
Msa0692320 MtrunA17_Chr1g0197361 47.468 158 75 4 11 165 10 162 7.62e-44 156
Msa0692320 MtrunA17_Chr8g0364791 45.399 163 83 3 5 165 2 160 1.27e-43 153
Msa0692320 MtrunA17_Chr3g0130101 44.586 157 81 3 11 165 9 161 1.40e-43 151
Msa0692320 MtrunA17_Chr3g0128111 47.134 157 67 3 12 161 45 192 6.05e-43 146
Msa0692320 MtrunA17_Chr8g0384201 43.558 163 86 3 5 165 2 160 4.18e-41 147
Msa0692320 MtrunA17_Chr4g0050701 40.764 157 81 3 9 161 11 159 2.06e-37 130
Msa0692320 MtrunA17_Chr3g0113001 52.756 127 53 3 58 183 14 134 1.24e-36 131
Msa0692320 MtrunA17_Chr4g0026141 44.654 159 77 5 9 159 5 160 3.39e-36 129
Msa0692320 MtrunA17_Chr2g0321631 43.312 157 81 4 10 159 5 160 5.47e-36 129
Msa0692320 MtrunA17_Chr7g0266701 39.181 171 96 4 9 171 4 174 1.87e-35 127
Msa0692320 MtrunA17_Chr2g0321741 49.180 122 50 2 40 160 23 133 2.90e-35 129
Msa0692320 MtrunA17_Chr8g0345671 50.769 130 58 4 8 132 10 138 1.10e-34 129
Msa0692320 MtrunA17_Chr8g0345711 40.625 160 82 6 9 156 12 170 1.53e-31 115
Msa0692320 MtrunA17_Chr8g0384351 40.741 162 72 5 1 162 2 139 1.76e-30 112
Msa0692320 MtrunA17_Chr8g0345691 42.038 157 72 7 9 158 12 156 3.14e-29 114
Msa0692320 MtrunA17_Chr3g0113031 51.754 114 45 3 73 183 4 110 3.61e-29 111
Msa0692320 MtrunA17_Chr8g0345731 45.802 131 64 5 9 132 24 154 1.53e-28 107
Msa0692320 MtrunA17_Chr8g0345721 38.554 166 62 6 6 132 27 191 4.17e-27 104
Msa0692320 MtrunA17_Chr3g0130321 31.401 207 119 7 8 198 6 205 2.48e-25 99.8
Msa0692320 MtrunA17_Chr7g0243371 58.667 75 29 1 62 134 17 91 1.08e-23 92.8
Msa0692320 MtrunA17_Chr8g0345741 42.373 118 62 4 20 132 2 118 2.79e-23 92.8
Msa0692320 MtrunA17_Chr8g0345701 37.748 151 70 7 1 132 1 146 7.22e-22 89.7
Msa0692320 MtrunA17_Chr7g0251661 28.289 152 102 5 3 151 4 151 4.55e-18 79.0
Msa0692320 MtrunA17_Chr7g0251671 29.323 133 88 4 3 132 4 133 1.32e-17 78.2
Msa0692320 MtrunA17_Chr7g0251651 29.375 160 103 6 8 161 17 172 1.33e-17 79.0
Msa0692320 MtrunA17_Chr7g0274971 31.073 177 97 8 15 181 11 172 1.11e-12 65.5
Msa0692320 MtrunA17_Chr4g0040541 31.724 145 81 5 7 134 46 189 4.06e-11 62.0
Msa0692320 MtrunA17_Chr2g0282871 31.293 147 78 6 7 134 51 193 8.56e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0692320 AT1G69490.1 66.222 225 66 3 1 215 1 225 4.42e-109 316
Msa0692320 AT1G61110.1 68.902 164 42 2 7 161 14 177 2.71e-79 243
Msa0692320 AT3G04070.2 55.963 218 78 5 9 208 10 227 1.19e-78 241
Msa0692320 AT3G04070.1 52.991 234 76 6 9 208 10 243 3.17e-77 238
Msa0692320 AT3G15510.1 62.573 171 55 2 13 174 21 191 1.29e-75 234
Msa0692320 AT1G77450.1 62.195 164 60 2 1 164 2 163 1.29e-73 226
Msa0692320 AT4G27410.2 51.131 221 89 4 5 211 10 225 4.82e-73 226
Msa0692320 AT3G15500.1 60.000 175 62 2 1 175 6 172 5.29e-73 226
Msa0692320 AT1G52890.1 64.935 154 50 1 9 162 14 163 2.31e-72 224
Msa0692320 AT1G01720.1 63.871 155 55 1 8 162 6 159 4.82e-71 220
Msa0692320 AT4G27410.3 47.479 238 89 5 5 211 10 242 1.95e-68 214
Msa0692320 AT5G08790.1 62.581 155 56 2 9 162 7 160 3.07e-68 213
Msa0692320 AT1G52880.1 68.153 157 42 2 13 161 21 177 1.69e-67 212
Msa0692320 AT5G63790.1 60.377 159 61 2 5 162 46 203 7.30e-67 210
Msa0692320 AT5G63790.2 60.377 159 61 2 5 162 56 213 7.61e-67 211
Msa0692320 AT5G39610.1 54.545 165 73 1 1 165 12 174 5.74e-60 192
Msa0692320 AT5G07680.2 55.280 161 70 1 8 168 2 160 1.35e-59 192
Msa0692320 AT5G07680.1 55.280 161 70 1 8 168 16 174 1.36e-59 192
Msa0692320 AT5G61430.1 54.658 161 71 1 8 168 15 173 2.22e-59 192
Msa0692320 AT2G33480.2 56.410 156 59 2 8 163 14 160 1.30e-58 188
Msa0692320 AT2G33480.1 58.333 156 58 3 8 163 14 162 1.47e-58 187
Msa0692320 AT5G13180.1 58.125 160 57 4 8 165 13 164 7.81e-58 185
Msa0692320 AT3G18400.1 51.899 158 71 1 9 166 5 157 8.85e-58 187
Msa0692320 AT2G24430.2 55.280 161 63 3 9 166 16 170 7.72e-57 185
Msa0692320 AT2G24430.1 55.280 161 63 3 9 166 16 170 7.72e-57 185
Msa0692320 AT4G36160.1 47.312 186 88 3 1 182 1 180 1.64e-56 186
Msa0692320 AT4G36160.3 47.312 186 88 3 1 182 1 180 1.64e-56 186
Msa0692320 AT3G29035.1 53.333 165 75 1 1 165 16 178 1.69e-56 184
Msa0692320 AT4G36160.2 47.312 186 88 3 1 182 5 184 1.77e-56 186
Msa0692320 AT3G17730.1 50.588 170 78 3 9 176 6 171 2.88e-56 181
Msa0692320 AT3G15170.1 55.484 155 65 2 9 161 20 172 3.40e-56 183
Msa0692320 AT2G18060.3 45.789 190 92 4 1 187 1 182 4.78e-56 184
Msa0692320 AT2G18060.1 45.789 190 92 4 1 187 1 182 4.78e-56 184
Msa0692320 AT1G33280.1 51.190 168 72 2 3 167 2 162 1.71e-55 181
Msa0692320 AT4G10350.1 40.417 240 125 5 1 236 1 226 2.92e-55 181
Msa0692320 AT1G65910.1 49.112 169 80 2 5 171 2 166 3.18e-55 188
Msa0692320 AT5G53950.1 53.416 161 71 2 9 167 17 175 4.59e-55 182
Msa0692320 AT1G76420.1 53.503 157 62 3 9 161 22 171 1.99e-54 179
Msa0692320 AT5G39820.1 51.744 172 60 4 11 161 22 191 3.88e-54 178
Msa0692320 AT1G62700.1 48.087 183 82 4 8 184 6 181 3.92e-54 180
Msa0692320 AT1G62700.2 48.087 183 82 4 8 184 6 181 3.92e-54 180
Msa0692320 AT2G43000.1 46.269 201 89 3 11 211 20 201 4.70e-54 176
Msa0692320 AT2G46770.1 44.091 220 104 6 8 208 15 234 7.24e-54 179
Msa0692320 AT5G17260.1 54.088 159 68 3 5 161 2 157 9.04e-54 181
Msa0692320 AT1G12260.2 46.927 179 86 2 9 184 7 179 9.06e-54 177
Msa0692320 AT3G04060.1 45.894 207 98 5 8 213 19 212 9.50e-54 177
Msa0692320 AT5G18270.2 52.147 163 75 2 8 169 20 180 1.41e-53 177
Msa0692320 AT1G12260.1 46.927 179 86 2 9 184 7 179 2.21e-53 178
Msa0692320 AT1G79580.3 52.532 158 64 3 9 162 17 167 2.27e-53 177
Msa0692320 AT1G79580.5 52.532 158 64 3 9 162 17 167 2.27e-53 177
Msa0692320 AT1G79580.4 52.532 158 64 3 9 162 17 167 2.27e-53 177
Msa0692320 AT1G79580.2 52.532 158 64 3 9 162 17 167 2.27e-53 177
Msa0692320 AT1G79580.1 52.532 158 64 3 9 162 17 167 2.27e-53 177
Msa0692320 AT1G71930.2 47.561 164 77 2 1 161 1 158 2.84e-53 176
Msa0692320 AT1G71930.1 47.561 164 77 2 1 161 1 158 2.84e-53 176
Msa0692320 AT5G18270.1 51.534 163 76 2 8 169 20 180 4.21e-53 176
Msa0692320 AT3G03200.1 52.830 159 70 3 5 161 2 157 8.00e-53 179
Msa0692320 AT1G26870.1 54.375 160 66 3 9 161 16 175 2.50e-52 176
Msa0692320 AT5G62380.2 50.909 165 70 3 1 162 1 157 1.03e-51 172
Msa0692320 AT5G62380.1 50.909 165 70 3 1 162 1 157 1.03e-51 172
Msa0692320 AT5G66300.1 47.273 165 79 2 1 162 4 163 1.42e-51 171
Msa0692320 AT3G12977.1 43.011 186 100 2 3 185 12 194 1.64e-51 170
Msa0692320 AT3G61910.1 41.014 217 105 5 8 208 10 219 1.76e-51 171
Msa0692320 AT1G54330.1 51.613 155 66 2 9 161 6 153 1.78e-51 171
Msa0692320 AT1G56010.2 46.951 164 85 2 3 165 13 175 5.67e-51 170
Msa0692320 AT3G10480.1 50.314 159 74 2 9 165 27 182 8.25e-51 172
Msa0692320 AT2G02450.1 48.851 174 82 3 11 183 53 220 1.55e-50 170
Msa0692320 AT1G32770.1 47.024 168 80 2 8 166 15 182 1.57e-50 170
Msa0692320 AT2G02450.2 53.289 152 64 3 11 161 53 198 1.77e-50 171
Msa0692320 AT3G10480.2 50.943 159 72 3 9 165 27 181 2.30e-50 171
Msa0692320 AT5G46590.1 53.659 164 68 5 5 164 2 161 3.07e-50 167
Msa0692320 AT3G10490.1 47.879 165 81 3 3 165 21 182 6.47e-50 164
Msa0692320 AT2G17040.1 49.398 166 72 2 11 173 8 164 8.29e-49 163
Msa0692320 AT5G46590.2 59.690 129 49 2 9 134 6 134 1.61e-48 162
Msa0692320 AT3G10500.1 47.904 167 81 2 1 165 1 163 1.74e-48 169
Msa0692320 AT4G17980.1 51.572 159 67 4 9 161 6 160 2.83e-48 161
Msa0692320 AT4G17980.2 50.920 163 70 4 5 161 2 160 3.93e-48 162
Msa0692320 AT3G10490.2 47.879 165 81 3 3 165 21 182 8.33e-48 165
Msa0692320 AT5G04410.1 48.503 167 80 3 1 165 1 163 9.52e-48 167
Msa0692320 AT4G28530.1 44.767 172 69 3 8 161 9 172 1.89e-47 161
Msa0692320 AT4G35580.2 51.250 160 62 3 9 161 9 159 3.64e-47 165
Msa0692320 AT4G35580.3 51.250 160 62 3 9 161 9 159 4.02e-47 165
Msa0692320 AT4G35580.1 51.250 160 62 3 9 161 9 159 5.17e-47 164
Msa0692320 AT1G34180.3 47.205 161 71 3 11 165 18 170 2.32e-46 161
Msa0692320 AT1G33060.2 50.955 157 67 3 9 161 24 174 3.44e-46 164
Msa0692320 AT1G33060.1 50.955 157 67 3 9 161 24 174 3.48e-46 164
Msa0692320 AT3G44290.2 47.531 162 72 3 11 170 16 166 3.96e-46 154
Msa0692320 AT1G32510.1 47.368 190 82 7 9 188 6 187 4.42e-46 156
Msa0692320 AT2G27300.1 44.706 170 82 2 3 171 8 166 7.95e-46 157
Msa0692320 AT5G24590.2 48.521 169 76 4 1 164 5 167 9.08e-46 159
Msa0692320 AT3G10480.3 41.327 196 77 3 5 165 23 215 9.35e-46 161
Msa0692320 AT1G34180.1 47.205 161 71 3 11 165 18 170 1.39e-45 161
Msa0692320 AT3G44290.1 47.531 162 72 3 11 170 16 166 2.03e-45 156
Msa0692320 AT1G34190.1 45.963 161 73 3 11 165 18 170 2.45e-45 160
Msa0692320 AT5G22290.1 46.626 163 74 3 11 171 23 174 1.29e-44 154
Msa0692320 AT1G34180.4 43.353 173 72 3 11 165 18 182 4.07e-44 155
Msa0692320 AT1G34180.2 43.353 173 72 3 11 165 18 182 2.03e-43 155
Msa0692320 AT3G12910.1 48.780 164 70 5 11 161 23 185 8.03e-43 148
Msa0692320 AT5G64060.1 45.062 162 77 3 9 165 6 160 1.06e-42 149
Msa0692320 AT3G49530.2 46.341 164 71 4 9 164 13 167 1.43e-42 150
Msa0692320 AT3G49530.1 46.341 164 71 4 9 164 13 167 3.13e-42 150
Msa0692320 AT5G09330.5 38.559 236 126 5 8 230 5 234 7.95e-42 150
Msa0692320 AT5G09330.2 38.559 236 126 5 8 230 5 234 7.95e-42 150
Msa0692320 AT5G09330.4 38.559 236 126 5 8 230 5 234 7.95e-42 150
Msa0692320 AT5G09330.3 38.559 236 126 5 8 230 5 234 7.95e-42 150
Msa0692320 AT5G09330.1 38.559 236 126 5 8 230 5 234 7.95e-42 150
Msa0692320 AT1G32870.2 49.375 160 73 4 9 165 10 164 1.07e-41 150
Msa0692320 AT1G32870.1 49.375 160 73 4 9 165 10 164 1.16e-41 150
Msa0692320 AT1G32870.3 49.375 160 73 4 9 165 46 200 2.13e-41 150
Msa0692320 AT5G61430.2 53.153 111 50 1 58 168 2 110 1.02e-37 134
Msa0692320 AT4G10350.2 39.773 176 91 4 62 236 18 179 1.48e-35 129
Msa0692320 AT5G04395.1 44.595 148 66 3 3 134 22 169 2.59e-35 125
Msa0692320 AT1G56010.1 52.381 105 49 1 61 165 5 108 1.16e-34 125
Msa0692320 AT2G33480.3 57.843 102 39 2 62 163 8 105 3.50e-34 123
Msa0692320 AT3G12977.2 46.957 115 58 1 54 168 10 121 3.64e-34 124
Msa0692320 AT5G64530.1 34.848 198 101 5 9 194 3 184 4.22e-32 117
Msa0692320 AT5G64530.2 44.531 128 57 3 9 134 3 118 9.58e-32 115
Msa0692320 AT5G22380.1 40.252 159 86 5 8 159 4 160 1.26e-30 114
Msa0692320 AT4G28530.2 35.882 170 50 3 8 161 9 135 1.60e-30 116
Msa0692320 AT3G44350.2 37.059 170 98 5 8 171 4 170 3.52e-30 114
Msa0692320 AT4G01550.1 41.975 162 75 6 12 165 7 157 4.23e-29 115
Msa0692320 AT3G04420.2 44.961 129 67 2 8 132 2 130 1.44e-28 110
Msa0692320 AT3G44350.1 41.791 134 72 3 8 135 4 137 1.62e-28 107
Msa0692320 AT3G04420.1 44.961 129 67 2 8 132 2 130 2.63e-28 111
Msa0692320 AT2G43000.2 42.553 141 62 3 71 211 2 123 5.50e-27 104
Msa0692320 AT1G02230.1 46.154 130 60 6 10 132 4 130 1.85e-25 103
Msa0692320 AT4G01520.1 41.667 132 70 4 10 134 5 136 7.06e-25 101
Msa0692320 AT1G02220.1 42.636 129 67 3 8 132 2 127 2.85e-24 100
Msa0692320 AT4G01540.4 42.308 130 68 4 12 134 7 136 5.97e-24 100
Msa0692320 AT4G01540.2 42.308 130 68 4 12 134 7 136 6.77e-24 100
Msa0692320 AT4G01540.3 42.308 130 68 4 12 134 7 136 6.93e-24 100
Msa0692320 AT4G01540.1 42.308 130 68 4 12 134 7 136 8.24e-24 100
Msa0692320 AT5G14000.2 37.405 131 78 2 8 136 14 142 1.29e-22 91.7
Msa0692320 AT1G02250.1 43.846 130 63 5 10 132 4 130 1.33e-22 95.9
Msa0692320 AT5G14000.1 32.934 167 99 4 8 171 14 170 1.81e-22 92.4
Msa0692320 AT3G56530.1 35.065 154 91 3 9 159 52 199 1.94e-22 94.7
Msa0692320 AT2G18060.2 44.118 102 49 3 86 187 1 94 1.02e-21 92.0
Msa0692320 AT1G01010.1 37.654 162 72 7 12 158 6 153 1.44e-21 93.6
Msa0692320 AT3G10490.4 48.810 84 40 2 82 165 2 82 1.71e-21 92.8
Msa0692320 AT3G10490.3 48.810 84 40 2 82 165 2 82 1.71e-21 92.8
Msa0692320 AT5G50820.1 35.766 137 76 4 6 138 14 142 1.69e-20 87.0
Msa0692320 AT3G55210.1 33.333 165 88 4 9 159 11 167 7.93e-18 81.6
Msa0692320 AT5G22290.2 47.059 85 33 2 88 171 2 75 1.42e-17 80.1
Msa0692320 AT3G04430.1 35.878 131 70 5 15 132 6 135 2.88e-12 64.7
Msa0692320 AT5G18300.1 34.286 140 72 7 13 145 18 144 7.67e-12 62.4
Msa0692320 AT5G56620.3 32.258 155 73 7 9 134 43 194 2.52e-11 63.9
Msa0692320 AT5G56620.1 32.258 155 73 7 9 134 43 194 2.69e-11 63.5
Msa0692320 AT5G56620.2 32.258 155 73 7 9 134 43 194 2.77e-11 63.5
Msa0692320 AT4G29230.1 32.667 150 76 6 9 134 48 196 4.26e-11 63.2
Msa0692320 AT4G29230.2 32.667 150 76 6 9 134 47 195 4.41e-11 63.2
Msa0692320 AT4G29230.3 32.667 150 76 6 9 134 48 196 5.06e-11 62.8

Find 79 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCATTTGTTTCACAAATAT+TGG 0.195650 4_4:+60759416 None:intergenic
CAAATCAACAATTCCAATAT+TGG 0.200100 4_4:-60759521 Msa0692320:CDS
AATCGAACTCGGTATCTATT+TGG 0.210406 4_4:-60759279 Msa0692320:three_prime_UTR
AAAAGTGGATCAAAGCAAAT+TGG 0.239330 4_4:-60760152 Msa0692320:CDS
TTTGGGTACTTTCTTTCTCT+TGG 0.269227 4_4:+60760242 None:intergenic
GAGCAACTTTGTCTGGATAT+TGG 0.273149 4_4:-60760202 Msa0692320:CDS
TTGTTCACTTACTTATCTTT+TGG 0.277479 4_4:-60759594 Msa0692320:CDS
ATAGGGGTCAATTCCAATAT+TGG 0.285565 4_4:+60759508 None:intergenic
AATTTATAGATATCAACTTC+TGG 0.300371 4_4:+60760628 None:intergenic
CTAAAGCCAGGAGGGAGTTC+AGG 0.302552 4_4:+60760733 None:intergenic
AATGCAGATAAATCTGAGTT+TGG 0.318833 4_4:-60760290 Msa0692320:intron
CCAGACAAAGTTGCTCTATT+AGG 0.328673 4_4:+60760209 None:intergenic
CTATTAGGCCTAACCCCATT+TGG 0.336706 4_4:+60760224 None:intergenic
TTGGGTACTTTCTTTCTCTT+GGG 0.351827 4_4:+60760243 None:intergenic
ATCGAACTCGGTATCTATTT+GGG 0.361613 4_4:-60759278 Msa0692320:three_prime_UTR
ATGCAGATAAATCTGAGTTT+GGG 0.362021 4_4:-60760289 Msa0692320:intron
CTTATCTGATGGTTCAACTT+TGG 0.369466 4_4:-60759549 Msa0692320:CDS
ATGCATGAGTACAGATTGAT+TGG 0.383604 4_4:-60760065 Msa0692320:CDS
AAAGTGGATCAAAGCAAATT+GGG 0.388567 4_4:-60760151 Msa0692320:CDS
AATTGGGGTGAAGAAATCTT+TGG 0.390973 4_4:-60760135 Msa0692320:CDS
TAATGGTTGGTCATTTCAAT+TGG 0.392349 4_4:+60759473 None:intergenic
AAACAAACTAGCAAACATAT+TGG 0.394247 4_4:-60760035 Msa0692320:CDS
TATTAGGCCTAACCCCATTT+GGG 0.396297 4_4:+60760225 None:intergenic
CCTAATAGAGCAACTTTGTC+TGG 0.401002 4_4:-60760209 Msa0692320:CDS
ATTTATAGATATCAACTTCT+GGG 0.409565 4_4:+60760629 None:intergenic
TTTCACAAATATTGGCTGAT+TGG 0.426611 4_4:+60759424 None:intergenic
TGATAATGTGACACATGAAA+AGG 0.437802 4_4:+60760835 None:intergenic
GAGAAAGAAAGTACCCAAAT+GGG 0.441206 4_4:-60760238 Msa0692320:CDS
AGAGAAAGAAAGTACCCAAA+TGG 0.452421 4_4:-60760239 Msa0692320:CDS
GTTGAACCATCAGATAAGAT+TGG 0.454575 4_4:+60759554 None:intergenic
CAAAGGGTGTCAAAACTGAT+TGG 0.459054 4_4:-60760091 Msa0692320:CDS
CTGAGTTTGGGGAGAATGAA+TGG 0.459662 4_4:-60760277 Msa0692320:CDS
GCAAGCCCTGAACTCCCTCC+TGG 0.468540 4_4:-60760739 Msa0692320:CDS
GGGATAATTGATGCAGGGCA+TGG 0.481397 4_4:+60760649 None:intergenic
TTTGGTCCAATCTTATCTGA+TGG 0.485374 4_4:-60759560 Msa0692320:CDS
TAAGTGAACAACTCCTTGTA+AGG 0.485477 4_4:+60759606 None:intergenic
ATATCTATAAATTTGATCCA+TGG 0.491707 4_4:-60760618 Msa0692320:CDS
TCTGGATATTGGAAAGCTAC+TGG 0.494091 4_4:-60760191 Msa0692320:CDS
TAAAGCCAGGAGGGAGTTCA+GGG 0.504659 4_4:+60760734 None:intergenic
GAGAGGAATTGAATTAATCA+AGG 0.505871 4_4:+60760880 None:intergenic
TTGGTCATTTCAATTGGCTG+AGG 0.507393 4_4:+60759479 None:intergenic
ATTAAAGGGCTTTACCCTCA+TGG 0.507553 4_4:+60760010 None:intergenic
TATCTATAAATTTGATCCAT+GGG 0.513541 4_4:-60760617 Msa0692320:CDS
TTTGATCCATGGGAATTGCC+TGG 0.520646 4_4:-60760607 Msa0692320:intron
GTACAAGTGGTTGGTGCGTA+AGG 0.521287 4_4:+60759237 None:intergenic
TCTATAATAACTAATAATGA+TGG 0.526503 4_4:-60759647 Msa0692320:CDS
ACTTCTGGGATAATTGATGC+AGG 0.531050 4_4:+60760643 None:intergenic
TATGTGAATCTGCTTCATAA+TGG 0.537169 4_4:+60759456 None:intergenic
TTACAAGGGCAGGCCACCAA+AGG 0.537258 4_4:-60760108 Msa0692320:CDS
GTTGGATGAAATCTAAAGCC+AGG 0.547592 4_4:+60760721 None:intergenic
AAGAAATGATGAACCTTACA+AGG 0.553442 4_4:-60759619 Msa0692320:CDS
GATAATGTGACACATGAAAA+GGG 0.553951 4_4:+60760836 None:intergenic
TACAAGGGCAGGCCACCAAA+GGG 0.555341 4_4:-60760107 Msa0692320:CDS
GAAAGTACCCAAATGGGGTT+AGG 0.557007 4_4:-60760232 Msa0692320:CDS
ATGTGACACATGAAAAGGGA+TGG 0.568315 4_4:+60760840 None:intergenic
ACAATTAGTTCCTCATCAGT+TGG 0.571272 4_4:+60760703 None:intergenic
TAGATTTCATCCAACTGATG+AGG 0.573387 4_4:-60760713 Msa0692320:CDS
GTGTCATCAGCTAGATGACT+GGG 0.591677 4_4:-60759756 Msa0692320:intron
ACAGACAAGGCAATCAAAAG+TGG 0.595775 4_4:-60760167 Msa0692320:CDS
TATATACCAGGCAATTCCCA+TGG 0.600939 4_4:+60760601 None:intergenic
TGTGTCATCAGCTAGATGAC+TGG 0.610296 4_4:-60759757 Msa0692320:intron
GAAAGCTACTGGCACAGACA+AGG 0.610943 4_4:-60760180 Msa0692320:CDS
ATCTATAAGAAGAAGCACAT+GGG 0.628002 4_4:-60759722 Msa0692320:CDS
AAAGGGATGGAAAATTGAAG+TGG 0.629756 4_4:+60760853 None:intergenic
TTATTATTAGGAATCGAACT+CGG 0.630527 4_4:-60759290 Msa0692320:three_prime_UTR
CAAACATATTGGATCCATGA+GGG 0.635338 4_4:-60760024 Msa0692320:intron
TGCAGATAAATCTGAGTTTG+GGG 0.637040 4_4:-60760288 Msa0692320:intron
GCAGGACTAGTACAAGTGGT+TGG 0.638815 4_4:+60759228 None:intergenic
CTTCTGGGATAATTGATGCA+GGG 0.642360 4_4:+60760644 None:intergenic
TGAATCTGCTTCATAATGGT+TGG 0.643722 4_4:+60759460 None:intergenic
TTGATGTAGCTTGATTACAA+AGG 0.644208 4_4:+60760674 None:intergenic
GATGAAATCTAAAGCCAGGA+GGG 0.652933 4_4:+60760725 None:intergenic
AAGTGGATCAAAGCAAATTG+GGG 0.655184 4_4:-60760150 Msa0692320:CDS
AAAATTGAAGTGGCTTCGAG+AGG 0.655924 4_4:+60760863 None:intergenic
GATCTATAAGAAGAAGCACA+TGG 0.656336 4_4:-60759723 Msa0692320:CDS
TATAGCAGGACTAGTACAAG+TGG 0.659305 4_4:+60759224 None:intergenic
AGAAAGAAAGTACCCAAATG+GGG 0.672302 4_4:-60760237 Msa0692320:CDS
GCAAACATATTGGATCCATG+AGG 0.704333 4_4:-60760025 Msa0692320:CDS
GGATGAAATCTAAAGCCAGG+AGG 0.707038 4_4:+60760724 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTGAGTCAAAAATAT+TGG + chr4_4:60759341-60759360 None:intergenic 15.0%
!!! AATATTTTTGACTCAATTAA+TGG - chr4_4:60759340-60759359 Msa0692320:three_prime_UTR 15.0%
!! TCTATAATAACTAATAATGA+TGG - chr4_4:60760463-60760482 Msa0692320:intron 15.0%
!! ATTAATTGAGTCAAAAATAT+TGG + chr4_4:60759341-60759360 None:intergenic 15.0%
!!! AATATTTTTGACTCAATTAA+TGG - chr4_4:60759340-60759359 Msa0692320:three_prime_UTR 15.0%
!! TCTATAATAACTAATAATGA+TGG - chr4_4:60760463-60760482 Msa0692320:intron 15.0%
!! ATTTATAGATATCAACTTCT+GGG + chr4_4:60759484-60759503 None:intergenic 20.0%
!! AATTTATAGATATCAACTTC+TGG + chr4_4:60759485-60759504 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr4_4:60759492-60759511 Msa0692320:CDS 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr4_4:60759493-60759512 Msa0692320:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG + chr4_4:60759524-60759543 None:intergenic 20.0%
!! ATTTATCTGCATTCTATAAT+TGG + chr4_4:60759813-60759832 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG + chr4_4:60760132-60760151 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+AGG + chr4_4:60760212-60760231 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG - chr4_4:60760271-60760290 Msa0692320:CDS 20.0%
!! ATTTATAGATATCAACTTCT+GGG + chr4_4:60759484-60759503 None:intergenic 20.0%
!! AATTTATAGATATCAACTTC+TGG + chr4_4:60759485-60759504 None:intergenic 20.0%
!! ATATCTATAAATTTGATCCA+TGG - chr4_4:60759492-60759511 Msa0692320:CDS 20.0%
!! TATCTATAAATTTGATCCAT+GGG - chr4_4:60759493-60759512 Msa0692320:CDS 20.0%
!! TTACAAAGTATATATATACC+AGG + chr4_4:60759524-60759543 None:intergenic 20.0%
!! ATTTATCTGCATTCTATAAT+TGG + chr4_4:60759813-60759832 None:intergenic 20.0%
!! ACAAACAAATATAGCAAAAT+AGG + chr4_4:60760132-60760151 None:intergenic 20.0%
!! AATAAAAATTCACTATGACA+AGG + chr4_4:60760212-60760231 None:intergenic 20.0%
!!! TTCTTTAAATCCTGAATTTT+AGG - chr4_4:60760271-60760290 Msa0692320:CDS 20.0%
! TTGGTACTAATTTGAGAAAA+TGG - chr4_4:60759678-60759697 Msa0692320:CDS 25.0%
! TAGTACCTAATAAAAAACGA+AGG + chr4_4:60759789-60759808 None:intergenic 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG - chr4_4:60759988-60760007 Msa0692320:intron 25.0%
! AAACAAACTAGCAAACATAT+TGG - chr4_4:60760075-60760094 Msa0692320:CDS 25.0%
! AAAATAGGCCAATGATTAAA+GGG + chr4_4:60760117-60760136 None:intergenic 25.0%
! AAAACAAACACCTAAAATTC+AGG + chr4_4:60760284-60760303 None:intergenic 25.0%
!! TTGTTCACTTACTTATCTTT+TGG - chr4_4:60760516-60760535 Msa0692320:intron 25.0%
!! CTTTTGGATATGAATTACTT+TGG - chr4_4:60760532-60760551 Msa0692320:intron 25.0%
! CAAATCAACAATTCCAATAT+TGG - chr4_4:60760589-60760608 Msa0692320:intron 25.0%
! TGCATTTGTTTCACAAATAT+TGG + chr4_4:60760697-60760716 None:intergenic 25.0%
! TTATTATTAGGAATCGAACT+CGG - chr4_4:60760820-60760839 Msa0692320:five_prime_UTR 25.0%
! TTGGTACTAATTTGAGAAAA+TGG - chr4_4:60759678-60759697 Msa0692320:CDS 25.0%
! TAGTACCTAATAAAAAACGA+AGG + chr4_4:60759789-60759808 None:intergenic 25.0%
!!! AAATCTTTGGTCTTTTACAA+GGG - chr4_4:60759988-60760007 Msa0692320:intron 25.0%
! AAACAAACTAGCAAACATAT+TGG - chr4_4:60760075-60760094 Msa0692320:CDS 25.0%
! AAAATAGGCCAATGATTAAA+GGG + chr4_4:60760117-60760136 None:intergenic 25.0%
! AAAACAAACACCTAAAATTC+AGG + chr4_4:60760284-60760303 None:intergenic 25.0%
!! TTGTTCACTTACTTATCTTT+TGG - chr4_4:60760516-60760535 Msa0692320:intron 25.0%
!! CTTTTGGATATGAATTACTT+TGG - chr4_4:60760532-60760551 Msa0692320:intron 25.0%
! CAAATCAACAATTCCAATAT+TGG - chr4_4:60760589-60760608 Msa0692320:intron 25.0%
! TGCATTTGTTTCACAAATAT+TGG + chr4_4:60760697-60760716 None:intergenic 25.0%
! TTATTATTAGGAATCGAACT+CGG - chr4_4:60760820-60760839 Msa0692320:five_prime_UTR 25.0%
GAGAGGAATTGAATTAATCA+AGG + chr4_4:60759233-60759252 None:intergenic 30.0%
GATAATGTGACACATGAAAA+GGG + chr4_4:60759277-60759296 None:intergenic 30.0%
! TGATAATGTGACACATGAAA+AGG + chr4_4:60759278-60759297 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG + chr4_4:60759439-60759458 None:intergenic 30.0%
CTCAAATTAGTACCAATGTT+TGG + chr4_4:60759674-60759693 None:intergenic 30.0%
!!! TGTCTCCTTCGTTTTTTATT+AGG - chr4_4:60759781-60759800 Msa0692320:intron 30.0%
AATGCAGATAAATCTGAGTT+TGG - chr4_4:60759820-60759839 Msa0692320:intron 30.0%
ATGCAGATAAATCTGAGTTT+GGG - chr4_4:60759821-60759840 Msa0692320:intron 30.0%
AAAAGTGGATCAAAGCAAAT+TGG - chr4_4:60759958-60759977 Msa0692320:intron 30.0%
AAAGTGGATCAAAGCAAATT+GGG - chr4_4:60759959-60759978 Msa0692320:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG - chr4_4:60759987-60760006 Msa0692320:intron 30.0%
CAAAATAGGCCAATGATTAA+AGG + chr4_4:60760118-60760137 None:intergenic 30.0%
! ACTATGACAAGGAAACTTTT+TGG + chr4_4:60760201-60760220 None:intergenic 30.0%
! ATCTATAAGAAGAAGCACAT+GGG - chr4_4:60760388-60760407 Msa0692320:intron 30.0%
AAAAACATTGCAGCAAAAAG+AGG - chr4_4:60760411-60760430 Msa0692320:intron 30.0%
AAGAAATGATGAACCTTACA+AGG - chr4_4:60760491-60760510 Msa0692320:intron 30.0%
! TAATGGTTGGTCATTTCAAT+TGG + chr4_4:60760640-60760659 None:intergenic 30.0%
TATGTGAATCTGCTTCATAA+TGG + chr4_4:60760657-60760676 None:intergenic 30.0%
! TTTCACAAATATTGGCTGAT+TGG + chr4_4:60760689-60760708 None:intergenic 30.0%
GAGAGGAATTGAATTAATCA+AGG + chr4_4:60759233-60759252 None:intergenic 30.0%
GATAATGTGACACATGAAAA+GGG + chr4_4:60759277-60759296 None:intergenic 30.0%
! TGATAATGTGACACATGAAA+AGG + chr4_4:60759278-60759297 None:intergenic 30.0%
TTGATGTAGCTTGATTACAA+AGG + chr4_4:60759439-60759458 None:intergenic 30.0%
CTCAAATTAGTACCAATGTT+TGG + chr4_4:60759674-60759693 None:intergenic 30.0%
!!! TGTCTCCTTCGTTTTTTATT+AGG - chr4_4:60759781-60759800 Msa0692320:intron 30.0%
AATGCAGATAAATCTGAGTT+TGG - chr4_4:60759820-60759839 Msa0692320:intron 30.0%
ATGCAGATAAATCTGAGTTT+GGG - chr4_4:60759821-60759840 Msa0692320:intron 30.0%
AAAAGTGGATCAAAGCAAAT+TGG - chr4_4:60759958-60759977 Msa0692320:intron 30.0%
AAAGTGGATCAAAGCAAATT+GGG - chr4_4:60759959-60759978 Msa0692320:intron 30.0%
!! GAAATCTTTGGTCTTTTACA+AGG - chr4_4:60759987-60760006 Msa0692320:intron 30.0%
CAAAATAGGCCAATGATTAA+AGG + chr4_4:60760118-60760137 None:intergenic 30.0%
! ACTATGACAAGGAAACTTTT+TGG + chr4_4:60760201-60760220 None:intergenic 30.0%
! ATCTATAAGAAGAAGCACAT+GGG - chr4_4:60760388-60760407 Msa0692320:intron 30.0%
AAAAACATTGCAGCAAAAAG+AGG - chr4_4:60760411-60760430 Msa0692320:intron 30.0%
AAGAAATGATGAACCTTACA+AGG - chr4_4:60760491-60760510 Msa0692320:intron 30.0%
! TAATGGTTGGTCATTTCAAT+TGG + chr4_4:60760640-60760659 None:intergenic 30.0%
TATGTGAATCTGCTTCATAA+TGG + chr4_4:60760657-60760676 None:intergenic 30.0%
! TTTCACAAATATTGGCTGAT+TGG + chr4_4:60760689-60760708 None:intergenic 30.0%
AAAGGGATGGAAAATTGAAG+TGG + chr4_4:60759260-60759279 None:intergenic 35.0%
TAGATTTCATCCAACTGATG+AGG - chr4_4:60759397-60759416 Msa0692320:exon 35.0%
ACAATTAGTTCCTCATCAGT+TGG + chr4_4:60759410-60759429 None:intergenic 35.0%
TCTCATGTTTGTGTCTATGT+TGG + chr4_4:60759638-60759657 None:intergenic 35.0%
ATGACGCTAAAACCAAACAT+TGG - chr4_4:60759659-60759678 Msa0692320:CDS 35.0%
! TTTAAGTTAGTGACGTGTAC+TGG - chr4_4:60759720-60759739 Msa0692320:CDS 35.0%
TGCAGATAAATCTGAGTTTG+GGG - chr4_4:60759822-60759841 Msa0692320:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG + chr4_4:60759870-60759889 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG + chr4_4:60759871-60759890 None:intergenic 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG - chr4_4:60759871-60759890 Msa0692320:intron 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG - chr4_4:60759872-60759891 Msa0692320:intron 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG - chr4_4:60759873-60759892 Msa0692320:intron 35.0%
AAGTGGATCAAAGCAAATTG+GGG - chr4_4:60759960-60759979 Msa0692320:intron 35.0%
AATTGGGGTGAAGAAATCTT+TGG - chr4_4:60759975-60759994 Msa0692320:intron 35.0%
ATGCATGAGTACAGATTGAT+TGG - chr4_4:60760045-60760064 Msa0692320:CDS 35.0%
CAAACATATTGGATCCATGA+GGG - chr4_4:60760086-60760105 Msa0692320:CDS 35.0%
! GCAAAACTGTTTTACACTGA+CGG - chr4_4:60760242-60760261 Msa0692320:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG - chr4_4:60760325-60760344 Msa0692320:intron 35.0%
! GATCTATAAGAAGAAGCACA+TGG - chr4_4:60760387-60760406 Msa0692320:intron 35.0%
TAAGTGAACAACTCCTTGTA+AGG + chr4_4:60760507-60760526 None:intergenic 35.0%
TTTGGTCCAATCTTATCTGA+TGG - chr4_4:60760550-60760569 Msa0692320:intron 35.0%
GTTGAACCATCAGATAAGAT+TGG + chr4_4:60760559-60760578 None:intergenic 35.0%
CTTATCTGATGGTTCAACTT+TGG - chr4_4:60760561-60760580 Msa0692320:intron 35.0%
ATAGGGGTCAATTCCAATAT+TGG + chr4_4:60760605-60760624 None:intergenic 35.0%
! ATTGGCTGAGGTTTTACATA+GGG + chr4_4:60760622-60760641 None:intergenic 35.0%
! AATTGGCTGAGGTTTTACAT+AGG + chr4_4:60760623-60760642 None:intergenic 35.0%
TGAATCTGCTTCATAATGGT+TGG + chr4_4:60760653-60760672 None:intergenic 35.0%
AATCGAACTCGGTATCTATT+TGG - chr4_4:60760831-60760850 Msa0692320:five_prime_UTR 35.0%
ATCGAACTCGGTATCTATTT+GGG - chr4_4:60760832-60760851 Msa0692320:five_prime_UTR 35.0%
AAAGGGATGGAAAATTGAAG+TGG + chr4_4:60759260-60759279 None:intergenic 35.0%
TAGATTTCATCCAACTGATG+AGG - chr4_4:60759397-60759416 Msa0692320:exon 35.0%
ACAATTAGTTCCTCATCAGT+TGG + chr4_4:60759410-60759429 None:intergenic 35.0%
TCTCATGTTTGTGTCTATGT+TGG + chr4_4:60759638-60759657 None:intergenic 35.0%
ATGACGCTAAAACCAAACAT+TGG - chr4_4:60759659-60759678 Msa0692320:CDS 35.0%
! TTTAAGTTAGTGACGTGTAC+TGG - chr4_4:60759720-60759739 Msa0692320:CDS 35.0%
TGCAGATAAATCTGAGTTTG+GGG - chr4_4:60759822-60759841 Msa0692320:intron 35.0%
TTGGGTACTTTCTTTCTCTT+GGG + chr4_4:60759870-60759889 None:intergenic 35.0%
TTTGGGTACTTTCTTTCTCT+TGG + chr4_4:60759871-60759890 None:intergenic 35.0%
!! AGAGAAAGAAAGTACCCAAA+TGG - chr4_4:60759871-60759890 Msa0692320:intron 35.0%
!! GAGAAAGAAAGTACCCAAAT+GGG - chr4_4:60759872-60759891 Msa0692320:intron 35.0%
!! AGAAAGAAAGTACCCAAATG+GGG - chr4_4:60759873-60759892 Msa0692320:intron 35.0%
AAGTGGATCAAAGCAAATTG+GGG - chr4_4:60759960-60759979 Msa0692320:intron 35.0%
AATTGGGGTGAAGAAATCTT+TGG - chr4_4:60759975-60759994 Msa0692320:intron 35.0%
ATGCATGAGTACAGATTGAT+TGG - chr4_4:60760045-60760064 Msa0692320:CDS 35.0%
CAAACATATTGGATCCATGA+GGG - chr4_4:60760086-60760105 Msa0692320:CDS 35.0%
! GCAAAACTGTTTTACACTGA+CGG - chr4_4:60760242-60760261 Msa0692320:CDS 35.0%
TATGATTGACCTTTCCTTTG+TGG - chr4_4:60760325-60760344 Msa0692320:intron 35.0%
! GATCTATAAGAAGAAGCACA+TGG - chr4_4:60760387-60760406 Msa0692320:intron 35.0%
TAAGTGAACAACTCCTTGTA+AGG + chr4_4:60760507-60760526 None:intergenic 35.0%
TTTGGTCCAATCTTATCTGA+TGG - chr4_4:60760550-60760569 Msa0692320:intron 35.0%
GTTGAACCATCAGATAAGAT+TGG + chr4_4:60760559-60760578 None:intergenic 35.0%
CTTATCTGATGGTTCAACTT+TGG - chr4_4:60760561-60760580 Msa0692320:intron 35.0%
ATAGGGGTCAATTCCAATAT+TGG + chr4_4:60760605-60760624 None:intergenic 35.0%
! ATTGGCTGAGGTTTTACATA+GGG + chr4_4:60760622-60760641 None:intergenic 35.0%
! AATTGGCTGAGGTTTTACAT+AGG + chr4_4:60760623-60760642 None:intergenic 35.0%
TGAATCTGCTTCATAATGGT+TGG + chr4_4:60760653-60760672 None:intergenic 35.0%
AATCGAACTCGGTATCTATT+TGG - chr4_4:60760831-60760850 Msa0692320:five_prime_UTR 35.0%
ATCGAACTCGGTATCTATTT+GGG - chr4_4:60760832-60760851 Msa0692320:five_prime_UTR 35.0%
AAAATTGAAGTGGCTTCGAG+AGG + chr4_4:60759250-60759269 None:intergenic 40.0%
ATGTGACACATGAAAAGGGA+TGG + chr4_4:60759273-60759292 None:intergenic 40.0%
! GATGAAATCTAAAGCCAGGA+GGG + chr4_4:60759388-60759407 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG + chr4_4:60759392-60759411 None:intergenic 40.0%
!! CTTCTGGGATAATTGATGCA+GGG + chr4_4:60759469-60759488 None:intergenic 40.0%
!! ACTTCTGGGATAATTGATGC+AGG + chr4_4:60759470-60759489 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG + chr4_4:60759512-60759531 None:intergenic 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG - chr4_4:60759745-60759764 Msa0692320:CDS 40.0%
TATTAGGCCTAACCCCATTT+GGG + chr4_4:60759888-60759907 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG + chr4_4:60759904-60759923 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG - chr4_4:60759901-60759920 Msa0692320:intron 40.0%
GAGCAACTTTGTCTGGATAT+TGG - chr4_4:60759908-60759927 Msa0692320:intron 40.0%
TCTGGATATTGGAAAGCTAC+TGG - chr4_4:60759919-60759938 Msa0692320:intron 40.0%
ACAGACAAGGCAATCAAAAG+TGG - chr4_4:60759943-60759962 Msa0692320:intron 40.0%
!! CAATCAGTTTTGACACCCTT+TGG + chr4_4:60760021-60760040 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG - chr4_4:60760019-60760038 Msa0692320:intron 40.0%
GCAAACATATTGGATCCATG+AGG - chr4_4:60760085-60760104 Msa0692320:CDS 40.0%
ATTAAAGGGCTTTACCCTCA+TGG + chr4_4:60760103-60760122 None:intergenic 40.0%
GGGTAAAGCCCTTTAATCAT+TGG - chr4_4:60760106-60760125 Msa0692320:CDS 40.0%
CACATACAACCACAAAGGAA+AGG + chr4_4:60760337-60760356 None:intergenic 40.0%
GATGACACATACAACCACAA+AGG + chr4_4:60760342-60760361 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG - chr4_4:60760365-60760384 Msa0692320:intron 40.0%
! TTGGCTGAGGTTTTACATAG+GGG + chr4_4:60760621-60760640 None:intergenic 40.0%
TTGGTCATTTCAATTGGCTG+AGG + chr4_4:60760634-60760653 None:intergenic 40.0%
AAAATTGAAGTGGCTTCGAG+AGG + chr4_4:60759250-60759269 None:intergenic 40.0%
ATGTGACACATGAAAAGGGA+TGG + chr4_4:60759273-60759292 None:intergenic 40.0%
! GATGAAATCTAAAGCCAGGA+GGG + chr4_4:60759388-60759407 None:intergenic 40.0%
! GTTGGATGAAATCTAAAGCC+AGG + chr4_4:60759392-60759411 None:intergenic 40.0%
!! CTTCTGGGATAATTGATGCA+GGG + chr4_4:60759469-60759488 None:intergenic 40.0%
!! ACTTCTGGGATAATTGATGC+AGG + chr4_4:60759470-60759489 None:intergenic 40.0%
TATATACCAGGCAATTCCCA+TGG + chr4_4:60759512-60759531 None:intergenic 40.0%
! ACGTCTTCAATCTGAAGTGT+CGG - chr4_4:60759745-60759764 Msa0692320:CDS 40.0%
TATTAGGCCTAACCCCATTT+GGG + chr4_4:60759888-60759907 None:intergenic 40.0%
CCAGACAAAGTTGCTCTATT+AGG + chr4_4:60759904-60759923 None:intergenic 40.0%
CCTAATAGAGCAACTTTGTC+TGG - chr4_4:60759901-60759920 Msa0692320:intron 40.0%
GAGCAACTTTGTCTGGATAT+TGG - chr4_4:60759908-60759927 Msa0692320:intron 40.0%
TCTGGATATTGGAAAGCTAC+TGG - chr4_4:60759919-60759938 Msa0692320:intron 40.0%
ACAGACAAGGCAATCAAAAG+TGG - chr4_4:60759943-60759962 Msa0692320:intron 40.0%
!! CAATCAGTTTTGACACCCTT+TGG + chr4_4:60760021-60760040 None:intergenic 40.0%
!! CAAAGGGTGTCAAAACTGAT+TGG - chr4_4:60760019-60760038 Msa0692320:intron 40.0%
GCAAACATATTGGATCCATG+AGG - chr4_4:60760085-60760104 Msa0692320:CDS 40.0%
ATTAAAGGGCTTTACCCTCA+TGG + chr4_4:60760103-60760122 None:intergenic 40.0%
GGGTAAAGCCCTTTAATCAT+TGG - chr4_4:60760106-60760125 Msa0692320:CDS 40.0%
CACATACAACCACAAAGGAA+AGG + chr4_4:60760337-60760356 None:intergenic 40.0%
GATGACACATACAACCACAA+AGG + chr4_4:60760342-60760361 None:intergenic 40.0%
!! TAGATGACTGGGTTTTATGC+AGG - chr4_4:60760365-60760384 Msa0692320:intron 40.0%
! TTGGCTGAGGTTTTACATAG+GGG + chr4_4:60760621-60760640 None:intergenic 40.0%
TTGGTCATTTCAATTGGCTG+AGG + chr4_4:60760634-60760653 None:intergenic 40.0%
! GGATGAAATCTAAAGCCAGG+AGG + chr4_4:60759389-60759408 None:intergenic 45.0%
TTTGATCCATGGGAATTGCC+TGG - chr4_4:60759503-60759522 Msa0692320:CDS 45.0%
CTGAGTTTGGGGAGAATGAA+TGG - chr4_4:60759833-60759852 Msa0692320:intron 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG - chr4_4:60759878-60759897 Msa0692320:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG + chr4_4:60759889-60759908 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG - chr4_4:60759992-60760011 Msa0692320:intron 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG + chr4_4:60760018-60760037 None:intergenic 45.0%
TGTGTCATCAGCTAGATGAC+TGG - chr4_4:60760353-60760372 Msa0692320:intron 45.0%
GTGTCATCAGCTAGATGACT+GGG - chr4_4:60760354-60760373 Msa0692320:intron 45.0%
! GGATGAAATCTAAAGCCAGG+AGG + chr4_4:60759389-60759408 None:intergenic 45.0%
TTTGATCCATGGGAATTGCC+TGG - chr4_4:60759503-60759522 Msa0692320:CDS 45.0%
CTGAGTTTGGGGAGAATGAA+TGG - chr4_4:60759833-60759852 Msa0692320:intron 45.0%
!! GAAAGTACCCAAATGGGGTT+AGG - chr4_4:60759878-60759897 Msa0692320:intron 45.0%
CTATTAGGCCTAACCCCATT+TGG + chr4_4:60759889-60759908 None:intergenic 45.0%
!! CTTTGGTCTTTTACAAGGGC+AGG - chr4_4:60759992-60760011 Msa0692320:intron 45.0%
!! TCAGTTTTGACACCCTTTGG+TGG + chr4_4:60760018-60760037 None:intergenic 45.0%
TGTGTCATCAGCTAGATGAC+TGG - chr4_4:60760353-60760372 Msa0692320:intron 45.0%
GTGTCATCAGCTAGATGACT+GGG - chr4_4:60760354-60760373 Msa0692320:intron 45.0%
!!! AATATCTTTTTTTTATTATT+AGG - chr4_4:60760808-60760827 Msa0692320:five_prime_UTR 5.0%
!!! AATATCTTTTTTTTATTATT+AGG - chr4_4:60760808-60760827 Msa0692320:five_prime_UTR 5.0%
TAAAGCCAGGAGGGAGTTCA+GGG + chr4_4:60759379-60759398 None:intergenic 50.0%
GGGATAATTGATGCAGGGCA+TGG + chr4_4:60759464-60759483 None:intergenic 50.0%
GAAAGCTACTGGCACAGACA+AGG - chr4_4:60759930-60759949 Msa0692320:intron 50.0%
! GTACAAGTGGTTGGTGCGTA+AGG + chr4_4:60760876-60760895 None:intergenic 50.0%
! GCAGGACTAGTACAAGTGGT+TGG + chr4_4:60760885-60760904 None:intergenic 50.0%
TAAAGCCAGGAGGGAGTTCA+GGG + chr4_4:60759379-60759398 None:intergenic 50.0%
GGGATAATTGATGCAGGGCA+TGG + chr4_4:60759464-60759483 None:intergenic 50.0%
GAAAGCTACTGGCACAGACA+AGG - chr4_4:60759930-60759949 Msa0692320:intron 50.0%
! GTACAAGTGGTTGGTGCGTA+AGG + chr4_4:60760876-60760895 None:intergenic 50.0%
! GCAGGACTAGTACAAGTGGT+TGG + chr4_4:60760885-60760904 None:intergenic 50.0%
CTAAAGCCAGGAGGGAGTTC+AGG + chr4_4:60759380-60759399 None:intergenic 55.0%
TTACAAGGGCAGGCCACCAA+AGG - chr4_4:60760002-60760021 Msa0692320:intron 55.0%
TACAAGGGCAGGCCACCAAA+GGG - chr4_4:60760003-60760022 Msa0692320:intron 55.0%
CTAAAGCCAGGAGGGAGTTC+AGG + chr4_4:60759380-60759399 None:intergenic 55.0%
TTACAAGGGCAGGCCACCAA+AGG - chr4_4:60760002-60760021 Msa0692320:intron 55.0%
TACAAGGGCAGGCCACCAAA+GGG - chr4_4:60760003-60760022 Msa0692320:intron 55.0%
GCAAGCCCTGAACTCCCTCC+TGG - chr4_4:60759371-60759390 Msa0692320:three_prime_UTR 65.0%
GCAAGCCCTGAACTCCCTCC+TGG - chr4_4:60759371-60759390 Msa0692320:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 60759225 60760907 60759225 ID=Msa0692320;Name=Msa0692320
chr4_4 mRNA 60759225 60760907 60759225 ID=Msa0692320-mRNA-1;Parent=Msa0692320;Name=Msa0692320-mRNA-1;_AED=0.10;_eAED=0.10;_QI=134|1|1|1|1|1|3|175|271
chr4_4 exon 60759225 60759768 60759225 ID=Msa0692320-mRNA-1:exon:16712;Parent=Msa0692320-mRNA-1
chr4_4 exon 60760025 60760305 60760025 ID=Msa0692320-mRNA-1:exon:16711;Parent=Msa0692320-mRNA-1
chr4_4 exon 60760608 60760907 60760608 ID=Msa0692320-mRNA-1:exon:16710;Parent=Msa0692320-mRNA-1
chr4_4 five_prime_UTR 60760774 60760907 60760774 ID=Msa0692320-mRNA-1:five_prime_utr;Parent=Msa0692320-mRNA-1
chr4_4 CDS 60760608 60760773 60760608 ID=Msa0692320-mRNA-1:cds;Parent=Msa0692320-mRNA-1
chr4_4 CDS 60760025 60760305 60760025 ID=Msa0692320-mRNA-1:cds;Parent=Msa0692320-mRNA-1
chr4_4 CDS 60759400 60759768 60759400 ID=Msa0692320-mRNA-1:cds;Parent=Msa0692320-mRNA-1
chr4_4 three_prime_UTR 60759225 60759399 60759225 ID=Msa0692320-mRNA-1:three_prime_utr;Parent=Msa0692320-mRNA-1
Gene Sequence

>Msa0692320

ATGGAGAGTAGTGCAAGCCCTGAACTCCCTCCTGGCTTTAGATTTCATCCAACTGATGAGGAACTAATTGTGCATTACCTTTGTAATCAAGCTACATCAAAGCCATGCCCTGCATCAATTATCCCAGAAGTTGATATCTATAAATTTGATCCATGGGAATTGCCTGATAAATCTGAGTTTGGGGAGAATGAATGGTATTTCTTTAGCCCAAGAGAAAGAAAGTACCCAAATGGGGTTAGGCCTAATAGAGCAACTTTGTCTGGATATTGGAAAGCTACTGGCACAGACAAGGCAATCAAAAGTGGATCAAAGCAAATTGGGGTGAAGAAATCTTTGGTCTTTTACAAGGGCAGGCCACCAAAGGGTGTCAAAACTGATTGGATTATGCATGAGTACAGATTGATTGGATCACAAAAACAAACTAGCAAACATATTGGATCCATGAGGCTAGATGACTGGGTTTTATGCAGGATCTATAAGAAGAAGCACATGGGAAAAACATTGCAGCAAAAAGAGGACTATTCAACAACACATCAATTTAATGATTCTATAATAACTAATAATGATGGTGAACAAGAAATGATGAACCTTACAAGGAGTTGTTCACTTACTTATCTTTTGGATATGAATTACTTTGGTCCAATCTTATCTGATGGTTCAACTTTGGATTTTCAAATCAACAATTCCAATATTGGAATTGACCCCTATGTAAAACCTCAGCCAATTGAAATGACCAACCATTATGAAGCAGATTCACATAGTAGCATCACCAATCAGCCAATATTTGTGAAACAAATGCATAATTATTTAGCATAA
Protein sequence

>Msa0692320

MESSASPELPPGFRFHPTDEELIVHYLCNQATSKPCPASIIPEVDIYKFDPWELPDKSEFGENEWYFFSPRERKYPNGVRPNRATLSGYWKATGTDKAIKSGSKQIGVKKSLVFYKGRPPKGVKTDWIMHEYRLIGSQKQTSKHIGSMRLDDWVLCRIYKKKHMGKTLQQKEDYSTTHQFNDSIITNNDGEQEMMNLTRSCSLTYLLDMNYFGPILSDGSTLDFQINNSNIGIDPYVKPQPIEMTNHYEADSHSSITNQPIFVKQMHNYLA*