AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651330

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651330 MtrunA17_Chr4g0043911 99.643 561 2 0 1 561 1 561 0.0 1163
Msa0651330 MtrunA17_Chr1g0160781 82.700 526 86 1 25 550 29 549 0.0 919
Msa0651330 MtrunA17_Chr3g0077321 58.300 506 203 3 51 548 40 545 0.0 638
Msa0651330 MtrunA17_Chr5g0424241 57.085 494 200 4 64 547 68 559 0.0 595
Msa0651330 MtrunA17_Chr3g0123521 42.955 440 230 12 124 549 117 549 1.11e-115 354
Msa0651330 MtrunA17_Chr2g0284071 40.948 464 229 12 124 548 184 641 9.39e-110 341
Msa0651330 MtrunA17_Chr4g0056061 38.866 494 270 14 68 554 28 496 8.04e-105 325
Msa0651330 MtrunA17_Chr5g0399311 41.509 424 225 10 132 554 111 512 1.37e-103 322
Msa0651330 MtrunA17_Chr3g0132951 38.210 458 248 11 119 549 68 517 3.87e-102 318
Msa0651330 MtrunA17_Chr5g0412251 37.660 470 258 12 106 548 41 502 5.23e-99 309
Msa0651330 MtrunA17_Chr5g0426591 39.775 445 230 10 126 549 86 513 8.23e-97 304
Msa0651330 MtrunA17_Chr5g0448581 41.562 397 213 8 153 548 122 500 1.31e-96 305
Msa0651330 MtrunA17_Chr3g0143821 38.190 453 253 10 67 512 26 458 2.02e-96 305
Msa0651330 MtrunA17_Chr3g0132371 34.676 571 300 17 19 548 1 539 1.49e-90 288
Msa0651330 MtrunA17_Chr4g0075311 38.395 461 242 11 126 549 138 593 2.17e-87 281
Msa0651330 MtrunA17_Chr3g0129981 37.838 444 233 13 126 547 89 511 8.49e-87 278
Msa0651330 MtrunA17_Chr4g0070551 37.307 453 242 15 118 552 194 622 5.02e-86 279
Msa0651330 MtrunA17_Chr4g0008451 36.199 442 244 13 122 547 202 621 1.86e-83 273
Msa0651330 MtrunA17_Chr5g0436321 37.136 412 225 10 150 548 161 551 2.90e-82 267
Msa0651330 MtrunA17_Chr4g0042711 35.337 416 242 10 150 554 97 496 3.51e-81 263
Msa0651330 MtrunA17_Chr2g0307971 35.613 424 244 9 149 560 114 520 1.80e-80 261
Msa0651330 MtrunA17_Chr6g0455571 36.010 411 233 10 149 546 114 507 4.97e-80 260
Msa0651330 MtrunA17_Chr4g0061781 36.386 415 234 10 149 550 115 512 1.68e-79 259
Msa0651330 MtrunA17_Chr5g0417871 34.383 413 248 10 150 553 85 483 1.11e-77 253
Msa0651330 MtrunA17_Chr1g0204121 35.526 456 251 14 117 550 43 477 4.67e-76 249
Msa0651330 MtrunA17_Chr1g0204141 35.652 460 248 15 117 550 43 480 7.94e-75 246
Msa0651330 MtrunA17_Chr3g0087291 33.793 435 258 10 124 547 141 556 1.65e-69 234
Msa0651330 MtrunA17_Chr4g0010511 33.790 438 260 9 127 553 204 622 1.20e-68 233
Msa0651330 MtrunA17_Chr4g0003561 32.642 386 220 14 126 501 48 403 2.07e-48 174
Msa0651330 MtrunA17_Chr1g0146501 29.048 420 242 11 44 443 2 385 3.22e-36 143
Msa0651330 MtrunA17_Chr3g0127811 31.153 321 197 7 130 441 38 343 2.75e-33 132
Msa0651330 MtrunA17_Chr7g0220381 27.961 304 197 8 149 440 97 390 7.79e-31 127
Msa0651330 MtrunA17_Chr4g0002361 23.011 352 222 8 135 480 70 378 3.22e-17 84.3
Msa0651330 MtrunA17_Chr7g0240241 34.074 135 73 4 321 449 6 130 3.16e-14 69.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651330 AT2G01480.1 80.072 557 110 1 2 557 5 561 0.0 951
Msa0651330 AT1G14970.1 74.101 556 138 1 2 557 13 562 0.0 873
Msa0651330 AT2G01480.2 80.157 509 100 1 2 509 5 513 0.0 869
Msa0651330 AT1G14970.2 80.230 435 86 0 123 557 8 442 0.0 757
Msa0651330 AT1G14970.3 80.723 415 80 0 143 557 2 416 0.0 724
Msa0651330 AT1G35510.1 56.157 536 219 6 23 548 28 557 0.0 623
Msa0651330 AT1G38131.1 54.949 495 204 3 68 547 67 557 0.0 570
Msa0651330 AT1G38065.2 57.981 426 164 2 137 547 3 428 0.0 528
Msa0651330 AT1G38065.1 59.169 409 162 1 144 547 30 438 0.0 523
Msa0651330 AT3G26370.1 43.249 437 227 11 127 549 128 557 9.77e-117 357
Msa0651330 AT5G65470.1 39.073 453 239 12 124 547 58 502 9.32e-100 311
Msa0651330 AT4G38390.1 40.695 403 222 7 149 550 122 508 2.32e-98 309
Msa0651330 AT4G24530.1 36.575 473 264 13 103 548 54 517 9.46e-98 307
Msa0651330 AT4G16650.2 37.383 535 287 16 35 558 17 514 1.18e-97 307
Msa0651330 AT4G16650.1 37.383 535 287 16 35 558 17 514 1.18e-97 307
Msa0651330 AT1G29200.4 39.148 493 255 15 97 548 6 494 2.59e-97 305
Msa0651330 AT1G29200.1 39.148 493 255 15 97 548 6 494 2.59e-97 305
Msa0651330 AT1G29200.2 40.177 453 231 12 132 548 162 610 4.13e-96 305
Msa0651330 AT1G62330.1 37.797 463 245 11 126 550 195 652 6.52e-96 306
Msa0651330 AT1G76270.1 39.161 429 234 10 126 547 78 486 9.92e-94 298
Msa0651330 AT1G20550.1 38.318 428 239 9 126 547 81 489 1.24e-92 295
Msa0651330 AT1G22460.1 38.288 444 233 11 126 548 135 558 1.01e-91 293
Msa0651330 AT1G11990.1 38.902 437 244 13 126 549 164 590 2.23e-91 292
Msa0651330 AT1G29200.3 40.426 423 218 10 156 548 2 420 4.52e-91 286
Msa0651330 AT5G01100.1 36.575 473 255 15 98 547 158 608 7.83e-89 287
Msa0651330 AT1G11990.2 35.950 484 251 14 119 549 135 612 1.23e-86 281
Msa0651330 AT5G64600.1 37.277 448 234 13 124 547 90 514 2.55e-86 277
Msa0651330 AT3G54100.1 36.283 452 254 14 123 560 193 624 2.31e-85 278
Msa0651330 AT2G37980.1 36.961 441 240 14 123 547 197 615 2.51e-85 278
Msa0651330 AT1G04910.1 37.029 451 261 12 107 550 43 477 9.93e-84 270
Msa0651330 AT5G35570.1 36.044 455 247 15 112 547 211 640 2.50e-82 270
Msa0651330 AT1G14020.1 35.561 419 237 10 150 554 91 490 2.31e-79 258
Msa0651330 AT5G15740.1 36.341 410 231 10 150 546 106 498 1.97e-78 256
Msa0651330 AT3G02250.1 37.430 358 206 6 149 503 105 447 2.07e-77 253
Msa0651330 AT2G03280.1 37.398 369 209 7 150 512 88 440 5.14e-75 246
Msa0651330 AT2G44500.1 34.157 445 264 9 126 559 147 573 1.69e-73 245
Msa0651330 AT5G63390.1 33.182 440 265 11 120 548 128 549 7.27e-70 235
Msa0651330 AT2G03280.2 34.848 396 209 8 150 512 88 467 7.20e-69 231
Msa0651330 AT3G07900.1 32.886 447 271 9 117 552 149 577 2.75e-66 226
Msa0651330 AT3G26370.2 43.373 249 127 7 127 364 128 373 9.77e-62 209
Msa0651330 AT1G52630.1 31.522 368 214 12 124 482 45 383 1.91e-43 160
Msa0651330 AT2G44500.2 35.055 271 154 6 127 389 148 404 4.12e-39 148
Msa0651330 AT3G03810.2 31.897 348 219 8 108 443 43 384 2.61e-38 150
Msa0651330 AT3G03810.1 31.897 348 219 8 108 443 43 384 2.61e-38 150
Msa0651330 AT1G52630.2 29.503 322 194 9 166 482 2 295 1.34e-33 131
Msa0651330 AT3G30300.2 29.276 304 193 8 150 441 100 393 1.67e-33 135
Msa0651330 AT3G30300.1 29.276 304 193 8 150 441 100 393 1.67e-33 135
Msa0651330 AT1G51630.1 24.363 353 215 10 135 480 75 382 4.16e-20 93.6
Msa0651330 AT3G21190.1 24.928 345 210 8 144 483 84 384 1.68e-19 91.7

Find 205 sgRNAs with CRISPR-Local

Find 453 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCCGGTATGCTTCTTTATA+TGG 0.109099 4_3:-58710028 Msa0651330:CDS
AAGAGGAACTTTCTACATTT+AGG 0.164218 4_3:-58705395 Msa0651330:CDS
TGACAAATGTTCACAATTTC+AGG 0.196692 4_3:-58707065 Msa0651330:CDS
TTCTGTGGCCCAGCAGAAAA+TGG 0.227977 4_3:+58705200 None:intergenic
ACATAGCTCACTCAATGTTT+TGG 0.259450 4_3:+58704554 None:intergenic
AATGCTAACTTCCGCTTATC+AGG 0.262820 4_3:+58705142 None:intergenic
TTCCATTCACCACCTCTATA+TGG 0.264650 4_3:+58708457 None:intergenic
AATGATACATTACCCTATAT+TGG 0.266570 4_3:+58705105 None:intergenic
GCTTTATTCTAATCTGAAAA+AGG 0.270843 4_3:-58709932 Msa0651330:CDS
CTCTTTGATAATCCCAATAT+AGG 0.275521 4_3:-58705118 Msa0651330:CDS
CCGCCTTGGACCGCCCTTGC+CGG 0.276203 4_3:+58710172 None:intergenic
AGAGAGCGTAGTGCCGTTAA+TGG 0.286345 4_3:-58706072 Msa0651330:CDS
TTCACATTTCCAGTAAATTC+AGG 0.288514 4_3:-58707188 Msa0651330:intron
TTTGACCATAGGTGAATCTT+TGG 0.291990 4_3:-58706106 Msa0651330:CDS
AGAGGAACTTTCTACATTTA+GGG 0.292975 4_3:-58705394 Msa0651330:intron
GTCTCCTTCGTATGCAAATT+AGG 0.298986 4_3:+58705429 None:intergenic
ACTTCCATTATCATAGTATA+TGG 0.303169 4_3:-58707365 Msa0651330:CDS
AATGGAAAATGTTCCTTTGC+AGG 0.308996 4_3:-58704585 Msa0651330:three_prime_UTR
CTTGCCGGAGGCGCGGCGAC+CGG 0.312151 4_3:+58710187 None:intergenic
CGGTCGCCGCGCCTCCGGCA+AGG 0.329807 4_3:-58710186 Msa0651330:CDS
TAGCAAATTACGAGGCTTTA+CGG 0.331573 4_3:-58706143 Msa0651330:CDS
TGTTCTAGAATTATTCTTCC+AGG 0.334104 4_3:-58705294 Msa0651330:intron
TCTTTCAGATATCTACAATA+TGG 0.334839 4_3:-58708486 Msa0651330:intron
ATGATACATTACCCTATATT+GGG 0.341853 4_3:+58705106 None:intergenic
CTCCAGTTGTCCAGCGCCTC+AGG 0.347072 4_3:-58706170 Msa0651330:CDS
CTTTCCATATACTATGATAA+TGG 0.356710 4_3:+58707361 None:intergenic
ATACTATGATAATGGAAGTT+TGG 0.357971 4_3:+58707369 None:intergenic
GGCCTGATGCTGAGGGGAAT+GGG 0.359232 4_3:-58705537 Msa0651330:CDS
AACATATTTACCGCCATTAA+CGG 0.366273 4_3:+58706059 None:intergenic
CACCTGAGGCGCTGGACAAC+TGG 0.366436 4_3:+58706168 None:intergenic
TCTTTGATAATCCCAATATA+GGG 0.370622 4_3:-58705117 Msa0651330:intron
CGGCAAGGGCGGTCCAAGGC+GGG 0.375456 4_3:-58710171 Msa0651330:CDS
TGGCCTGATGCTGAGGGGAA+TGG 0.376541 4_3:-58705538 Msa0651330:CDS
TGCAATGCCGTTGCTGTGGC+TGG 0.378237 4_3:-58707417 Msa0651330:CDS
GATTCACCTATGGTCAAAAT+AGG 0.383591 4_3:+58706111 None:intergenic
AGCAAAATTTCTCAATTGCT+TGG 0.386006 4_3:+58704170 None:intergenic
ATCTACTCATGGAATTTGAT+TGG 0.388566 4_3:-58704797 Msa0651330:three_prime_UTR
CGCTCCGGTCGCCGCGCCTC+CGG 0.401305 4_3:-58710191 Msa0651330:CDS
GCTGAGTTGGATGCTGCTTT+CGG 0.403095 4_3:-58710100 Msa0651330:CDS
GCCGGTATGCTTCTTTATAT+GGG 0.404874 4_3:-58710027 Msa0651330:CDS
CAAAATATGAAACTGATAAC+AGG 0.405338 4_3:+58704318 None:intergenic
TTGGCACGGCACATACATTC+TGG 0.406203 4_3:+58704856 None:intergenic
GGTCGCCGCGCCTCCGGCAA+GGG 0.413658 4_3:-58710185 Msa0651330:CDS
TGGAAATAGCCAAGAGGAAC+TGG 0.419509 4_3:-58704115 Msa0651330:three_prime_UTR
AATGCCCGCTGCTCGGTAGC+CGG 0.423216 4_3:+58710238 None:intergenic
TGTTCACAATTTCAGGATCA+AGG 0.427509 4_3:-58707058 Msa0651330:CDS
TCTGTGGCCCAGCAGAAAAT+GGG 0.435357 4_3:+58705201 None:intergenic
AACCCATTCCCCTCAGCATC+AGG 0.438857 4_3:+58705535 None:intergenic
TCTTCACCCTCCGGTGGAGG+AGG 0.440937 4_3:-58710141 Msa0651330:CDS
GCAGGACGGTGTTTAATAAT+CGG 0.452957 4_3:+58709982 None:intergenic
CGGTGCTTCTCCGGCGACAA+GGG 0.453681 4_3:-58710080 Msa0651330:CDS
TCACATTTCCAGTAAATTCA+GGG 0.453964 4_3:-58707187 Msa0651330:intron
TTGCTAAGCACCTGAGGCGC+TGG 0.454996 4_3:+58706160 None:intergenic
CTGGAGCAATCAGGATCAAC+GGG 0.458461 4_3:-58705775 Msa0651330:CDS
TTCAGGTTGGCCTGATGCTG+AGG 0.462435 4_3:-58705545 Msa0651330:intron
AGGCATGGTCACAAAATCAT+AGG 0.463488 4_3:+58704763 None:intergenic
TGCCTTCTCACCGGATGGGA+AGG 0.465129 4_3:+58704695 None:intergenic
TGAAGAAAATTTCCCCGCCT+TGG 0.465495 4_3:+58710158 None:intergenic
ATTAAACACCGTCCTGCTCC+TGG 0.468289 4_3:-58709976 Msa0651330:CDS
AAAGGGAAATTTACAAAGCC+TGG 0.469236 4_3:-58705812 Msa0651330:CDS
GAATGTAGGTTCGTGAAGAA+AGG 0.469854 4_3:+58710424 None:intergenic
CCGTTGATCCTGATTGCTCC+AGG 0.470975 4_3:+58705776 None:intergenic
TGCTGCCAAATCTTTCCATC+AGG 0.471344 4_3:+58707091 None:intergenic
GTTTAGCGCAGAGGCTGAGT+TGG 0.475791 4_3:-58710113 Msa0651330:CDS
TGCACCGGCTACCGAGCAGC+GGG 0.476872 4_3:-58710242 Msa0651330:CDS
TCAGGTTGGCCTGATGCTGA+GGG 0.482463 4_3:-58705544 Msa0651330:intron
GAGTACCTGATGGAAAGATT+TGG 0.483424 4_3:-58707096 Msa0651330:CDS
TCTTTCTGTGTGTATCAAAA+CGG 0.484274 4_3:+58710319 None:intergenic
TCTGTACATTAACAAAATCC+AGG 0.489049 4_3:-58704396 Msa0651330:three_prime_UTR
GGCGTCGAATGCCCGCTGCT+CGG 0.491324 4_3:+58710231 None:intergenic
GTAATCTATAGCAGCCATCC+TGG 0.491391 4_3:+58705276 None:intergenic
TGCTGCTTTCGGTGCTTCTC+CGG 0.491965 4_3:-58710089 Msa0651330:CDS
AGTATGATATTCATGTGTTA+AGG 0.492076 4_3:-58704436 Msa0651330:three_prime_UTR
CCTTCTCACCGGATGGGAAG+GGG 0.493168 4_3:+58704697 None:intergenic
AGGAATTGGATCAAATATCA+AGG 0.493243 4_3:-58704649 Msa0651330:three_prime_UTR
TTGCTCCAGGACGTATGATT+CGG 0.493631 4_3:+58705789 None:intergenic
TACATATATGTAGAGGCTAA+TGG 0.494144 4_3:-58707564 Msa0651330:CDS
TTTGCATACGAAGGAGACTC+TGG 0.497099 4_3:-58705424 Msa0651330:CDS
GCCTTCTCACCGGATGGGAA+GGG 0.497500 4_3:+58704696 None:intergenic
TTAGGAAACATTTGTAGTAG+TGG 0.498241 4_3:+58705447 None:intergenic
CTTCACCCTCCGGTGGAGGA+GGG 0.498330 4_3:-58710140 Msa0651330:CDS
CCCCTTCCCATCCGGTGAGA+AGG 0.499091 4_3:-58704697 Msa0651330:three_prime_UTR
GTCCATATAGAGGTGGTGAA+TGG 0.499927 4_3:-58708459 Msa0651330:CDS
ATGATTGCTGCAAGAGAAAG+AGG 0.500394 4_3:-58705839 Msa0651330:CDS
CCGGCAAGGGCGGTCCAAGG+CGG 0.501162 4_3:-58710172 Msa0651330:CDS
TCATACGTCCTGGAGCAATC+AGG 0.501976 4_3:-58705784 Msa0651330:CDS
ATAGTATATGGAAAGATCCT+AGG 0.502813 4_3:-58707353 Msa0651330:intron
GGGTATGCCTTCTCACCGGA+TGG 0.504487 4_3:+58704690 None:intergenic
AAGGACAATCTATTCGCAAA+AGG 0.504698 4_3:+58706201 None:intergenic
CTTCTCACCGGATGGGAAGG+GGG 0.506209 4_3:+58704698 None:intergenic
TCGGTGCTTCTCCGGCGACA+AGG 0.506944 4_3:-58710081 Msa0651330:CDS
CGTAATTTGCTAAGCACCTG+AGG 0.507845 4_3:+58706154 None:intergenic
GAAGAAACAGAGTTTAAGAG+TGG 0.507980 4_3:-58704135 Msa0651330:three_prime_UTR
CACATCTCTATAATACTGAA+TGG 0.508393 4_3:+58707026 None:intergenic
CGGAGGCGCGGCGACCGGAG+CGG 0.510117 4_3:+58710192 None:intergenic
CGCCGCGCCTCCGGCAAGGG+CGG 0.512409 4_3:-58710182 Msa0651330:CDS
TAAACTCCTCCCTCCTCCAC+CGG 0.512809 4_3:+58710131 None:intergenic
AAGCTGTATATAGAGTCATT+TGG 0.516192 4_3:+58704886 None:intergenic
CCTCCGGCAAGGGCGGTCCA+AGG 0.516352 4_3:-58710175 Msa0651330:CDS
TTCAACCAAAGATTCACCTA+TGG 0.516389 4_3:+58706101 None:intergenic
CCTAAAACAGACCAAGAAAA+CGG 0.521570 4_3:+58704362 None:intergenic
AAGGAGATAATAACCTCTAG+TGG 0.521847 4_3:+58705737 None:intergenic
AACGAGCTATTTAGAGTCAA+AGG 0.523265 4_3:-58704501 Msa0651330:three_prime_UTR
GACCGCCCTTGCCGGAGGCG+CGG 0.523444 4_3:+58710180 None:intergenic
ATAGGTCTACCCGAGTCAAA+TGG 0.524701 4_3:-58707588 Msa0651330:intron
CGATAAAGCGAGCCAGGAGC+AGG 0.527327 4_3:+58709964 None:intergenic
GGCAAGGGCGGTCCAAGGCG+GGG 0.527384 4_3:-58710170 Msa0651330:CDS
TTCTCACCGGATGGGAAGGG+GGG 0.529973 4_3:+58704699 None:intergenic
AATAACCTCTAGTGGGGTGA+GGG 0.529991 4_3:+58705745 None:intergenic
CCTGGCCGAATCATACGTCC+TGG 0.536052 4_3:-58705794 Msa0651330:CDS
GGACTACGATAAAGCGAGCC+AGG 0.537123 4_3:+58709958 None:intergenic
CACTGTTTGTCTTCATAGTG+AGG 0.537308 4_3:-58705254 Msa0651330:CDS
CATCTCCGCAATCTCCGCTC+CGG 0.541458 4_3:-58710206 Msa0651330:CDS
AATGTAGGTTCGTGAAGAAA+GGG 0.541489 4_3:+58710425 None:intergenic
CACCCTCCGGTGGAGGAGGG+AGG 0.541793 4_3:-58710137 Msa0651330:CDS
CCAGGACGTATGATTCGGCC+AGG 0.542297 4_3:+58705794 None:intergenic
GACAACTGGAGGAGCATCAA+AGG 0.544084 4_3:+58706182 None:intergenic
GACCAAGAAAACGGTATGGC+AGG 0.544400 4_3:+58704371 None:intergenic
TCAGCAGCTTGATCTACTCA+TGG 0.546339 4_3:-58704808 Msa0651330:exon
GGCGACCGGAGCGGAGATTG+CGG 0.547340 4_3:+58710201 None:intergenic
CTAGAATTATTCTTCCAGGA+TGG 0.547657 4_3:-58705290 Msa0651330:intron
AGCGGAGATTGCGGAGATGA+CGG 0.547840 4_3:+58710210 None:intergenic
AAAACGACGAAGATGAAGAA+AGG 0.548449 4_3:+58710354 None:intergenic
ATCGTTGATCTGAAATGCAC+CGG 0.553993 4_3:-58710257 Msa0651330:exon
GAGGTCACACAGTGATTCCA+AGG 0.555464 4_3:-58704926 Msa0651330:CDS
ACTCCTCCCTCCTCCACCGG+AGG 0.555622 4_3:+58710134 None:intergenic
GGCCACAGAAGATACTTGTA+TGG 0.556259 4_3:-58705187 Msa0651330:CDS
CCTTGGACCGCCCTTGCCGG+AGG 0.556532 4_3:+58710175 None:intergenic
AATCTTTCCATCAGGTACTC+AGG 0.556689 4_3:+58707099 None:intergenic
TTTGGGAGAGATTCCTGCAA+AGG 0.557042 4_3:+58704572 None:intergenic
TTGCTGCAAGAGAAAGAGGT+TGG 0.559046 4_3:-58705835 Msa0651330:CDS
ATGGGGAAAGTTACCACCCT+GGG 0.561543 4_3:+58705219 None:intergenic
CAAGATTCCTGAGTACCTGA+TGG 0.564832 4_3:-58707106 Msa0651330:CDS
GGAGACTCTGGCTTCTGAAG+AGG 0.565018 4_3:-58705412 Msa0651330:CDS
TAATAACCTCTAGTGGGGTG+AGG 0.566360 4_3:+58705744 None:intergenic
CAAGAGAAAGAGGTTGGAAA+GGG 0.566845 4_3:-58705829 Msa0651330:CDS
TATGCTTCTTTATATGGGAA+CGG 0.567706 4_3:-58710022 Msa0651330:CDS
TGGATCAAATATCAAGGGAG+TGG 0.568808 4_3:-58704643 Msa0651330:three_prime_UTR
AGGAGATAATAACCTCTAGT+GGG 0.569111 4_3:+58705738 None:intergenic
GTTTCCTAATTTGCATACGA+AGG 0.569455 4_3:-58705433 Msa0651330:CDS
TCATACTTCACATAATGTAC+AGG 0.570596 4_3:+58704452 None:intergenic
TGAGGTGTTCGTCACAACCC+AGG 0.571608 4_3:-58705236 Msa0651330:CDS
AATGTACAGGCAGGTTGTGA+AGG 0.576376 4_3:+58704465 None:intergenic
CGGCACATACATTCTGGACA+TGG 0.576592 4_3:+58704862 None:intergenic
GATGCCAATTCAGAACAGAA+TGG 0.577445 4_3:-58704603 Msa0651330:three_prime_UTR
ATATATGTATCCATTTGACT+CGG 0.577602 4_3:+58707578 None:intergenic
GCAAGAGAAAGAGGTTGGAA+AGG 0.580707 4_3:-58705830 Msa0651330:CDS
AATCGTCGGTTCTATTGGCA+CGG 0.582762 4_3:+58704842 None:intergenic
GAGGTGTTCGTCACAACCCA+GGG 0.585782 4_3:-58705235 Msa0651330:CDS
AAAACGGTATGGCAGGACCC+TGG 0.587529 4_3:+58704378 None:intergenic
CTGAGGCGCTGGACAACTGG+AGG 0.587571 4_3:+58706171 None:intergenic
CCTGGAGCAATCAGGATCAA+CGG 0.587903 4_3:-58705776 Msa0651330:CDS
GGAATTGGATCAAATATCAA+GGG 0.590972 4_3:-58704648 Msa0651330:three_prime_UTR
TTCAGATTAGAATAAAGCTG+AGG 0.595196 4_3:+58709937 None:intergenic
AGCGTCAACTGCTGAACATG+AGG 0.596425 4_3:-58704945 Msa0651330:CDS
ATATGGAGAAGTCCATATAG+AGG 0.598207 4_3:-58708469 Msa0651330:CDS
CAGAAATGCACTCAGTGGCA+AGG 0.599401 4_3:+58704743 None:intergenic
TCCCATATAAAGAAGCATAC+CGG 0.599861 4_3:+58710026 None:intergenic
ATGCACCGGCTACCGAGCAG+CGG 0.600065 4_3:-58710243 Msa0651330:CDS
AACAGACCAAGAAAACGGTA+TGG 0.602079 4_3:+58704367 None:intergenic
ACTTCACATAATGTACAGGC+AGG 0.605489 4_3:+58704456 None:intergenic
GAATAGTGAAATAGTTACAC+TGG 0.605520 4_3:+58704196 None:intergenic
ATGCACTCAGTGGCAAGGCA+TGG 0.606594 4_3:+58704748 None:intergenic
CAACTAGACCCTCAATGTGA+AGG 0.608967 4_3:+58704291 None:intergenic
TGGTGGGTATGCCTTCTCAC+CGG 0.611274 4_3:+58704686 None:intergenic
ACAATTTCAGGATCAAGGCA+TGG 0.613833 4_3:-58707053 Msa0651330:CDS
CTGTACATTAACAAAATCCA+GGG 0.614568 4_3:-58704395 Msa0651330:three_prime_UTR
GGTATGCCTTCTCACCGGAT+GGG 0.614913 4_3:+58704691 None:intergenic
GGCAAAGAAACAAACCGCAT+CGG 0.616739 4_3:+58709885 None:intergenic
CTCCTCCCTCCTCCACCGGA+GGG 0.617309 4_3:+58710135 None:intergenic
GCTCCGTTGATTTATATCGC+CGG 0.620961 4_3:-58710045 Msa0651330:CDS
CTGTGGCCCAGCAGAAAATG+GGG 0.623681 4_3:+58705202 None:intergenic
ATAACCTCTAGTGGGGTGAG+GGG 0.627238 4_3:+58705746 None:intergenic
TATATGTATCCATTTGACTC+GGG 0.632755 4_3:+58707579 None:intergenic
CAGGTTGGCCTGATGCTGAG+GGG 0.634157 4_3:-58705543 Msa0651330:CDS
TAGATAGCCAGCCACAGCAA+CGG 0.638707 4_3:+58707410 None:intergenic
AAATGGATACATATATGTAG+AGG 0.639855 4_3:-58707571 Msa0651330:CDS
ATATAATGCTGAGAAAACAA+TGG 0.641862 4_3:-58705472 Msa0651330:CDS
AGACAATTAAGCCTGATAAG+CGG 0.644283 4_3:-58705153 Msa0651330:CDS
CTTAAATCAGCAAAGGACAT+CGG 0.644691 4_3:-58707538 Msa0651330:intron
AATGGAAGTTTGGAATCACA+AGG 0.644732 4_3:+58707379 None:intergenic
ATGGTGGCTTAAATCAGCAA+AGG 0.645601 4_3:-58707545 Msa0651330:CDS
TGTGTAAATAGATCTTCAGA+AGG 0.646000 4_3:-58708430 Msa0651330:intron
CACCATACAAGTATCTTCTG+TGG 0.650588 4_3:+58705185 None:intergenic
GAGCGTAGTGCCGTTAATGG+CGG 0.653129 4_3:-58706069 Msa0651330:CDS
CATTCAGTATTATAGAGATG+TGG 0.653828 4_3:-58707025 Msa0651330:CDS
GGATAACTCTTCTACCGATG+CGG 0.654560 4_3:-58709899 Msa0651330:intron
TCTGAAGATCTATTTACACA+TGG 0.658128 4_3:+58708433 None:intergenic
AAAGCGAGCCAGGAGCAGGA+CGG 0.659359 4_3:+58709968 None:intergenic
CACAGAAGATACTTGTATGG+TGG 0.660172 4_3:-58705184 Msa0651330:CDS
GTGTCCCCTCACCCCACTAG+AGG 0.664674 4_3:-58705750 Msa0651330:intron
GGTATGCAATGCCGTTGCTG+TGG 0.666009 4_3:-58707421 Msa0651330:CDS
TGGAGAAGTCCATATAGAGG+TGG 0.670438 4_3:-58708466 Msa0651330:CDS
GGAGATAATAACCTCTAGTG+GGG 0.676659 4_3:+58705739 None:intergenic
GAGGGAGGAGTTTAGCGCAG+AGG 0.682139 4_3:-58710122 Msa0651330:CDS
CAGGTGCTTAGCAAATTACG+AGG 0.687343 4_3:-58706151 Msa0651330:CDS
ATATATGTAGAGGCTAATGG+TGG 0.688262 4_3:-58707561 Msa0651330:CDS
AGGTCACACAGTGATTCCAA+GGG 0.690772 4_3:-58704925 Msa0651330:CDS
AATGGGGAAAGTTACCACCC+TGG 0.694185 4_3:+58705218 None:intergenic
TAAGAGTGGAAATAGCCAAG+AGG 0.694553 4_3:-58704121 Msa0651330:three_prime_UTR
ATACCGGCGATATAAATCAA+CGG 0.703205 4_3:+58710042 None:intergenic
AGTATCAGAAATGCACTCAG+TGG 0.721917 4_3:+58704738 None:intergenic
ATGGAAGTTTGGAATCACAA+GGG 0.724437 4_3:+58707380 None:intergenic
GTATCATTGCTAAAACAATG+TGG 0.733568 4_3:+58704218 None:intergenic
GTGTTCGTCACAACCCAGGG+TGG 0.740890 4_3:-58705232 Msa0651330:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACTAACTATTAATTTATATA+CGG - chr4_3:58706899-58706918 Msa0651330:intron 10.0%
!! GAAAGTAATAATAAATTAAA+GGG + chr4_3:58709539-58709558 None:intergenic 10.0%
!!! TTTGATGATTTTTTAGTATT+TGG - chr4_3:58704691-58704710 Msa0651330:three_prime_UTR 15.0%
!! TGTTATTGTTATAATAAAGT+AGG - chr4_3:58705038-58705057 Msa0651330:intron 15.0%
!!! AATTTTCAACTTATAAAAAG+AGG + chr4_3:58705484-58705503 None:intergenic 15.0%
!!! TTTTTATAAGTTGAAAATTC+AGG - chr4_3:58705485-58705504 Msa0651330:CDS 15.0%
!!! TTCATACTTTTCTATTTTTA+TGG - chr4_3:58705973-58705992 Msa0651330:intron 15.0%
!! AAGTAATTAGTATATAAACT+TGG + chr4_3:58706430-58706449 None:intergenic 15.0%
!! TATATACTAATTACTTCATT+TGG - chr4_3:58706434-58706453 Msa0651330:intron 15.0%
!!! TTTGTGCTTTTAATATTAAT+TGG - chr4_3:58707242-58707261 Msa0651330:intron 15.0%
!! GATATATAGATAAATCATTA+GGG + chr4_3:58707784-58707803 None:intergenic 15.0%
!! CTAATGATTTATCTATATAT+CGG - chr4_3:58707783-58707802 Msa0651330:intron 15.0%
!!! TAATTAAATTTTATTCATGC+AGG - chr4_3:58708282-58708301 Msa0651330:intron 15.0%
!!! AATTAAATTTTATTCATGCA+GGG - chr4_3:58708283-58708302 Msa0651330:intron 15.0%
!! AAGAAAAGAAAGAAAAATTT+AGG - chr4_3:58708831-58708850 Msa0651330:intron 15.0%
!! GGAAAGTAATAATAAATTAA+AGG + chr4_3:58709540-58709559 None:intergenic 15.0%
!!! TTTGTTATTCTTTTACATTA+TGG - chr4_3:58710280-58710299 Msa0651330:five_prime_UTR 15.0%
!!! TAATTTTTGATTGTGAATGT+AGG + chr4_3:58704114-58704133 None:intergenic 20.0%
!! AAAAATACAGATTCGAAAAA+AGG + chr4_3:58704660-58704679 None:intergenic 20.0%
!!! AATTAAGCTTATGAAAGTTT+TGG - chr4_3:58704768-58704787 Msa0651330:three_prime_UTR 20.0%
!!! TATGAAAGTTTTGGATTTAT+AGG - chr4_3:58704777-58704796 Msa0651330:three_prime_UTR 20.0%
!! TATACAGATTGTTGAAATTT+GGG + chr4_3:58705097-58705116 None:intergenic 20.0%
!! TTATACAGATTGTTGAAATT+TGG + chr4_3:58705098-58705117 None:intergenic 20.0%
!! TCTGTATAAGAAAAATACAA+TGG - chr4_3:58705109-58705128 Msa0651330:intron 20.0%
!! AAATACAATGGTTATGTAAA+TGG - chr4_3:58705121-58705140 Msa0651330:CDS 20.0%
!! TTGTATACAAAGAAAAATGA+AGG + chr4_3:58705315-58705334 None:intergenic 20.0%
!!! TTCATTTTTCTTTGTATACA+AGG - chr4_3:58705314-58705333 Msa0651330:intron 20.0%
!!! TCATTTTTCTTTGTATACAA+GGG - chr4_3:58705315-58705334 Msa0651330:intron 20.0%
!! AAAAAAAAAAATTGCATGCT+TGG + chr4_3:58705703-58705722 None:intergenic 20.0%
!! AAAGAAAATGTCATCATTTA+TGG + chr4_3:58706139-58706158 None:intergenic 20.0%
!! TATCCAAAGGAAAAAAATAT+TGG - chr4_3:58706710-58706729 Msa0651330:intron 20.0%
!! ATCCAAAGGAAAAAAATATT+GGG - chr4_3:58706711-58706730 Msa0651330:intron 20.0%
!!! ACATAAAATCTTTTAGATGA+TGG - chr4_3:58706734-58706753 Msa0651330:intron 20.0%
!!! CATTATGTGTTTTCAAATAT+TGG - chr4_3:58707021-58707040 Msa0651330:CDS 20.0%
!! ACATCATTCACAAAATAAAT+GGG + chr4_3:58707069-58707088 None:intergenic 20.0%
!! AGTTAATAGTTAAAACAGTT+TGG - chr4_3:58707593-58707612 Msa0651330:intron 20.0%
!! GTTAATAGTTAAAACAGTTT+GGG - chr4_3:58707594-58707613 Msa0651330:intron 20.0%
!! TTAATAGTTAAAACAGTTTG+GGG - chr4_3:58707595-58707614 Msa0651330:intron 20.0%
!! CGATATATAGATAAATCATT+AGG + chr4_3:58707785-58707804 None:intergenic 20.0%
!!! ATTATTTTAAGCTTCATCTA+AGG - chr4_3:58707811-58707830 Msa0651330:intron 20.0%
!!! TTATTTTAAGCTTCATCTAA+GGG - chr4_3:58707812-58707831 Msa0651330:intron 20.0%
!!! CTAAAATCGTTAAAGTTTTA+AGG + chr4_3:58708806-58708825 None:intergenic 20.0%
!! AGTAATAATAAATTAAAGGG+AGG + chr4_3:58709536-58709555 None:intergenic 20.0%
!! ATTTATTATTACTTTCCAGA+TGG - chr4_3:58709543-58709562 Msa0651330:intron 20.0%
!! AATGAAATGAATGTTTTGCA+AGG + chr4_3:58704062-58704081 None:intergenic 25.0%
!! GCTTTATTCTAATCTGAAAA+AGG - chr4_3:58704589-58704608 Msa0651330:three_prime_UTR 25.0%
! TTCTAATCTGAAAAAGGATA+TGG - chr4_3:58704595-58704614 Msa0651330:three_prime_UTR 25.0%
! GTATTTGCTTATTCTGATTT+AGG - chr4_3:58704738-58704757 Msa0651330:three_prime_UTR 25.0%
!!! TAGGTTGATTTCAATTGTAT+TGG - chr4_3:58704796-58704815 Msa0651330:three_prime_UTR 25.0%
! ATACAGATTGTTGAAATTTG+GGG + chr4_3:58705096-58705115 None:intergenic 25.0%
! GAAGTGGGAATAAAAATATT+TGG - chr4_3:58705254-58705273 Msa0651330:CDS 25.0%
!!! TTCAATAACTTTTTCTCCTA+CGG + chr4_3:58705448-58705467 None:intergenic 25.0%
!!! ATTTTTCAGCTTCTTCTATA+AGG - chr4_3:58705795-58705814 Msa0651330:CDS 25.0%
! TCTTTCAGATATCTACAATA+TGG - chr4_3:58706035-58706054 Msa0651330:CDS 25.0%
!! TATAATTTTGTCGATGCTTT+TGG - chr4_3:58706368-58706387 Msa0651330:intron 25.0%
! TACTAATTACTTCATTTGGA+TGG - chr4_3:58706438-58706457 Msa0651330:intron 25.0%
! GAGAAGATAGAAAAATACTA+GGG + chr4_3:58706669-58706688 None:intergenic 25.0%
! AGAGAAGATAGAAAAATACT+AGG + chr4_3:58706670-58706689 None:intergenic 25.0%
!! AATTTCCTTTTTCTATCCAA+AGG - chr4_3:58706697-58706716 Msa0651330:intron 25.0%
!! TTTTTCCTTTGGATAGAAAA+AGG + chr4_3:58706705-58706724 None:intergenic 25.0%
!! TTGCCATTTAATTTATGAAG+TGG - chr4_3:58706764-58706783 Msa0651330:intron 25.0%
! TAATAGTTAGTGAAACAAAG+TGG + chr4_3:58706890-58706909 None:intergenic 25.0%
! ATATATGTATCCATTTGACT+CGG + chr4_3:58706946-58706965 None:intergenic 25.0%
! AAATGGATACATATATGTAG+AGG - chr4_3:58706950-58706969 Msa0651330:intron 25.0%
! GACATCATTCACAAAATAAA+TGG + chr4_3:58707070-58707089 None:intergenic 25.0%
!!! ATACTATGATAATGGAAGTT+TGG + chr4_3:58707155-58707174 None:intergenic 25.0%
! ACTTCCATTATCATAGTATA+TGG - chr4_3:58707156-58707175 Msa0651330:CDS 25.0%
! CTTTCCATATACTATGATAA+TGG + chr4_3:58707163-58707182 None:intergenic 25.0%
! TTAATTGGTTATGTGTTTCT+TGG - chr4_3:58707257-58707276 Msa0651330:intron 25.0%
! GAAATATTATGGATCAGATT+GGG + chr4_3:58707316-58707335 None:intergenic 25.0%
! TGAAATATTATGGATCAGAT+TGG + chr4_3:58707317-58707336 None:intergenic 25.0%
! ACTGGAAATGTGAAATATTA+TGG + chr4_3:58707327-58707346 None:intergenic 25.0%
!! ACTTTTCTTCAAGTAACTTT+GGG + chr4_3:58707526-58707545 None:intergenic 25.0%
!!! ATGTTTGTTTTACTTTATCG+TGG - chr4_3:58707555-58707574 Msa0651330:CDS 25.0%
!!! TGTTTGTTTTACTTTATCGT+GGG - chr4_3:58707556-58707575 Msa0651330:CDS 25.0%
! AAAACGATACTTAAAAGGAA+TGG + chr4_3:58707680-58707699 None:intergenic 25.0%
! CCAATAAAACGATACTTAAA+AGG + chr4_3:58707685-58707704 None:intergenic 25.0%
!!! CCTTTTAAGTATCGTTTTAT+TGG - chr4_3:58707682-58707701 Msa0651330:intron 25.0%
! GATTTATCTATATATCGGAT+AGG - chr4_3:58707788-58707807 Msa0651330:intron 25.0%
!!! TATTTTAAGCTTCATCTAAG+GGG - chr4_3:58707813-58707832 Msa0651330:intron 25.0%
! AAATATCATTATTACCCCAT+CGG - chr4_3:58708199-58708218 Msa0651330:intron 25.0%
!! GTTTTCTTATCAAATATGCT+AGG - chr4_3:58708232-58708251 Msa0651330:intron 25.0%
! TTAGTCTAGCTAAAATTTCA+AGG - chr4_3:58708880-58708899 Msa0651330:intron 25.0%
! ATATAATGCTGAGAAAACAA+TGG - chr4_3:58709049-58709068 Msa0651330:intron 25.0%
!! TCTTTGATAATCCCAATATA+GGG - chr4_3:58709404-58709423 Msa0651330:intron 25.0%
! ATGATACATTACCCTATATT+GGG + chr4_3:58709418-58709437 None:intergenic 25.0%
! AATGATACATTACCCTATAT+TGG + chr4_3:58709419-58709438 None:intergenic 25.0%
! AGCTAATGTAAATTCAAACA+AGG + chr4_3:58709460-58709479 None:intergenic 25.0%
! ATTCCTTTGATCTTCAAAAA+TGG + chr4_3:58709858-58709877 None:intergenic 25.0%
!!! TTTTTGAAGATCAAAGGAAT+TGG - chr4_3:58709858-58709877 Msa0651330:intron 25.0%
! AGTATGATATTCATGTGTTA+AGG - chr4_3:58710085-58710104 Msa0651330:CDS 25.0%
! CAAAATATGAAACTGATAAC+AGG + chr4_3:58710206-58710225 None:intergenic 25.0%
! ATGAATGTTTTGCAAGGTTT+GGG + chr4_3:58704056-58704075 None:intergenic 30.0%
! AATGAATGTTTTGCAAGGTT+TGG + chr4_3:58704057-58704076 None:intergenic 30.0%
TCTTTCTGTGTGTATCAAAA+CGG + chr4_3:58704205-58704224 None:intergenic 30.0%
TATGCTTCTTTATATGGGAA+CGG - chr4_3:58704499-58704518 Msa0651330:three_prime_UTR 30.0%
TTCAGATTAGAATAAAGCTG+AGG + chr4_3:58704587-58704606 None:intergenic 30.0%
TCTGAAAAAGGATATGGATT+CGG - chr4_3:58704601-58704620 Msa0651330:three_prime_UTR 30.0%
! TTGGATTTTCGTAGTCAAAT+AGG - chr4_3:58704815-58704834 Msa0651330:exon 30.0%
TCGTAGTCAAATAGGTTATT+AGG - chr4_3:58704823-58704842 Msa0651330:CDS 30.0%
ATAATGTGTGTTAGTATCGT+AGG - chr4_3:58704966-58704985 Msa0651330:intron 30.0%
TAATGTGTGTTAGTATCGTA+GGG - chr4_3:58704967-58704986 Msa0651330:intron 30.0%
ACAATGGTTATGTAAATGGT+TGG - chr4_3:58705125-58705144 Msa0651330:CDS 30.0%
GAATTGAAATTACTTGCTTG+TGG - chr4_3:58705155-58705174 Msa0651330:CDS 30.0%
!!! GTGTTTTCTAGCTTGTTATT+TGG - chr4_3:58705230-58705249 Msa0651330:CDS 30.0%
CAGTATTGTCATCATCAATA+TGG - chr4_3:58705536-58705555 Msa0651330:CDS 30.0%
AATCACATTGAATTCACCTA+GGG + chr4_3:58705617-58705636 None:intergenic 30.0%
!! GTTTTGTTAACTCTGGAAAT+TGG + chr4_3:58705652-58705671 None:intergenic 30.0%
!! TATGTGTGTTTTGTTAACTC+TGG + chr4_3:58705659-58705678 None:intergenic 30.0%
! TTTATGTTTTTCTTGACTGC+TGG - chr4_3:58705744-58705763 Msa0651330:intron 30.0%
TGAAGATATATGAAGTGCAA+TGG + chr4_3:58705957-58705976 None:intergenic 30.0%
TCTGAAGATCTATTTACACA+TGG + chr4_3:58706091-58706110 None:intergenic 30.0%
TGTGTAAATAGATCTTCAGA+AGG - chr4_3:58706091-58706110 Msa0651330:CDS 30.0%
!! TACAAAGCGTTGTTAAATAG+CGG - chr4_3:58706258-58706277 Msa0651330:intron 30.0%
!! CCTTTAAAACAGAAAAGACT+AGG + chr4_3:58706632-58706651 None:intergenic 30.0%
!! CCTAGTCTTTTCTGTTTTAA+AGG - chr4_3:58706629-58706648 Msa0651330:intron 30.0%
!!! GTCCCAATATTTTTTTCCTT+TGG + chr4_3:58706716-58706735 None:intergenic 30.0%
GGACCACTTCATAAATTAAA+TGG + chr4_3:58706770-58706789 None:intergenic 30.0%
TATACGGTTGTATTGTTGAT+AGG - chr4_3:58706915-58706934 Msa0651330:intron 30.0%
TATATGTATCCATTTGACTC+GGG + chr4_3:58706945-58706964 None:intergenic 30.0%
TACATATATGTAGAGGCTAA+TGG - chr4_3:58706957-58706976 Msa0651330:intron 30.0%
TGAATGATGTCAATGCTTAT+AGG - chr4_3:58707079-58707098 Msa0651330:CDS 30.0%
ATAGTATATGGAAAGATCCT+AGG - chr4_3:58707168-58707187 Msa0651330:CDS 30.0%
AAACTAAATAAACACCATCG+TGG + chr4_3:58707286-58707305 None:intergenic 30.0%
TTCACATTTCCAGTAAATTC+AGG - chr4_3:58707333-58707352 Msa0651330:intron 30.0%
TCACATTTCCAGTAAATTCA+GGG - chr4_3:58707334-58707353 Msa0651330:intron 30.0%
ATATCCTGAAAAATGATGTG+CGG - chr4_3:58707384-58707403 Msa0651330:CDS 30.0%
TGACAAATGTTCACAATTTC+AGG - chr4_3:58707456-58707475 Msa0651330:intron 30.0%
CACATCTCTATAATACTGAA+TGG + chr4_3:58707498-58707517 None:intergenic 30.0%
CATTCAGTATTATAGAGATG+TGG - chr4_3:58707496-58707515 Msa0651330:intron 30.0%
! CACTTTTCTTCAAGTAACTT+TGG + chr4_3:58707527-58707546 None:intergenic 30.0%
! TTTCTTTCTTTTCCTAACCT+TGG + chr4_3:58707635-58707654 None:intergenic 30.0%
AAGGTTAGGAAAAGAAAGAA+AGG - chr4_3:58707634-58707653 Msa0651330:intron 30.0%
! ATTTTAAGCTTCATCTAAGG+GGG - chr4_3:58707814-58707833 Msa0651330:intron 30.0%
!! TAAAATGTCATAAGAGCGTT+AGG + chr4_3:58707914-58707933 None:intergenic 30.0%
AAAACTCCTATTTATCCGAT+GGG + chr4_3:58708217-58708236 None:intergenic 30.0%
AACATATTTACCGCCATTAA+CGG + chr4_3:58708465-58708484 None:intergenic 30.0%
TTAATCTTTACTGCAACTGA+TGG - chr4_3:58708579-58708598 Msa0651330:intron 30.0%
!! TTCTCCTGTTGTATTTTTGA+TGG - chr4_3:58708637-58708656 Msa0651330:intron 30.0%
GTAAATGCTTTCATTTCTTC+AGG - chr4_3:58708959-58708978 Msa0651330:intron 30.0%
! GAAGAACACATCTATCTTTT+TGG - chr4_3:58709013-58709032 Msa0651330:intron 30.0%
TTAGGAAACATTTGTAGTAG+TGG + chr4_3:58709077-58709096 None:intergenic 30.0%
AAGAGGAACTTTCTACATTT+AGG - chr4_3:58709126-58709145 Msa0651330:intron 30.0%
AGAGGAACTTTCTACATTTA+GGG - chr4_3:58709127-58709146 Msa0651330:intron 30.0%
!! TGTTCTAGAATTATTCTTCC+AGG - chr4_3:58709227-58709246 Msa0651330:intron 30.0%
! CTCTTTGATAATCCCAATAT+AGG - chr4_3:58709403-58709422 Msa0651330:intron 30.0%
AAGCTGTATATAGAGTCATT+TGG + chr4_3:58709638-58709657 None:intergenic 30.0%
! TGATGAAGATTTTGAATCGT+CGG + chr4_3:58709696-58709715 None:intergenic 30.0%
ATCTACTCATGGAATTTGAT+TGG - chr4_3:58709724-58709743 Msa0651330:intron 30.0%
CTTTGATCTTCAAAAATGGT+GGG + chr4_3:58709854-58709873 None:intergenic 30.0%
AGGAATTGGATCAAATATCA+AGG - chr4_3:58709872-58709891 Msa0651330:intron 30.0%
GGAATTGGATCAAATATCAA+GGG - chr4_3:58709873-58709892 Msa0651330:intron 30.0%
!! TTTTCCATTCTGTTCTGAAT+TGG + chr4_3:58709925-58709944 None:intergenic 30.0%
TCATACTTCACATAATGTAC+AGG + chr4_3:58710072-58710091 None:intergenic 30.0%
TCTGTACATTAACAAAATCC+AGG - chr4_3:58710125-58710144 Msa0651330:CDS 30.0%
CTGTACATTAACAAAATCCA+GGG - chr4_3:58710126-58710145 Msa0651330:CDS 30.0%
!!! TTTTGTTTTCCTTCACATTG+AGG - chr4_3:58710221-58710240 Msa0651330:CDS 30.0%
!! TTTGTTTTCCTTCACATTGA+GGG - chr4_3:58710222-58710241 Msa0651330:CDS 30.0%
GTATCATTGCTAAAACAATG+TGG + chr4_3:58710306-58710325 None:intergenic 30.0%
GAATAGTGAAATAGTTACAC+TGG + chr4_3:58710328-58710347 None:intergenic 30.0%
AGCAAAATTTCTCAATTGCT+TGG + chr4_3:58710354-58710373 None:intergenic 30.0%
AATGTAGGTTCGTGAAGAAA+GGG + chr4_3:58704099-58704118 None:intergenic 35.0%
AAAACGACGAAGATGAAGAA+AGG + chr4_3:58704170-58704189 None:intergenic 35.0%
ATACCGGCGATATAAATCAA+CGG + chr4_3:58704482-58704501 None:intergenic 35.0%
! TCCCATATAAAGAAGCATAC+CGG + chr4_3:58704498-58704517 None:intergenic 35.0%
GTTATTAGGTCTGAATTCGA+TGG - chr4_3:58704837-58704856 Msa0651330:CDS 35.0%
TGGTTATGTAAATGGTTGGT+TGG - chr4_3:58705129-58705148 Msa0651330:CDS 35.0%
! TATGTAAATGGTTGGTTGGA+TGG - chr4_3:58705133-58705152 Msa0651330:CDS 35.0%
GCTTACTATATTGGTATGTG+TGG - chr4_3:58705179-58705198 Msa0651330:CDS 35.0%
!! TAGCTTGTTATTTGGTGAAG+TGG - chr4_3:58705238-58705257 Msa0651330:CDS 35.0%
!! AGCTTGTTATTTGGTGAAGT+GGG - chr4_3:58705239-58705258 Msa0651330:CDS 35.0%
AATATTTGGCCACATTCATG+CGG - chr4_3:58705268-58705287 Msa0651330:CDS 35.0%
TGTGATTTGATTGGATAGGA+TGG - chr4_3:58705352-58705371 Msa0651330:intron 35.0%
GTGATTTGATTGGATAGGAT+GGG - chr4_3:58705353-58705372 Msa0651330:intron 35.0%
GAATCACATTGAATTCACCT+AGG + chr4_3:58705618-58705637 None:intergenic 35.0%
ATATGGAGAAGTCCATATAG+AGG - chr4_3:58706052-58706071 Msa0651330:CDS 35.0%
CTCTCAATGTTGTCAAGTAA+CGG - chr4_3:58706162-58706181 Msa0651330:CDS 35.0%
! TAGCGGCTATTTCAACTTTA+TGG - chr4_3:58706275-58706294 Msa0651330:intron 35.0%
! TTGATTCGTCTATTCCTTGT+TGG - chr4_3:58706396-58706415 Msa0651330:intron 35.0%
TGCTATACACATAAGTGTGA+GGG + chr4_3:58706499-58706518 None:intergenic 35.0%
ATGCTATACACATAAGTGTG+AGG + chr4_3:58706500-58706519 None:intergenic 35.0%
CTTATGTGTATAGCATCTCT+TGG - chr4_3:58706504-58706523 Msa0651330:intron 35.0%
GATAGAAAAATACTAGGGTG+AGG + chr4_3:58706664-58706683 None:intergenic 35.0%
ATGAAGTGGTCCATTATTGT+CGG - chr4_3:58706778-58706797 Msa0651330:intron 35.0%
! ATAAGGTATCCCGACAATAA+TGG + chr4_3:58706791-58706810 None:intergenic 35.0%
ACAGCATCAATTCATGCATA+AGG + chr4_3:58706808-58706827 None:intergenic 35.0%
TATGCATGAATTGATGCTGT+TGG - chr4_3:58706808-58706827 Msa0651330:intron 35.0%
TAGTTAGTGAAACAAAGTGG+TGG + chr4_3:58706887-58706906 None:intergenic 35.0%
ATATATGTAGAGGCTAATGG+TGG - chr4_3:58706960-58706979 Msa0651330:intron 35.0%
CTTAAATCAGCAAAGGACAT+CGG - chr4_3:58706983-58707002 Msa0651330:intron 35.0%
! ATGGAAGTTTGGAATCACAA+GGG + chr4_3:58707144-58707163 None:intergenic 35.0%
! AATGGAAGTTTGGAATCACA+AGG + chr4_3:58707145-58707164 None:intergenic 35.0%
TATATGGAAAGATCCTAGGT+TGG - chr4_3:58707172-58707191 Msa0651330:CDS 35.0%
GTTCGTCTGAACTATATCTT+CGG - chr4_3:58707194-58707213 Msa0651330:intron 35.0%
TATCCTGAAAAATGATGTGC+GGG - chr4_3:58707385-58707404 Msa0651330:CDS 35.0%
TGTTCACAATTTCAGGATCA+AGG - chr4_3:58707463-58707482 Msa0651330:intron 35.0%
! TTAAAACAGTTTGGGGTGAT+TGG - chr4_3:58707602-58707621 Msa0651330:intron 35.0%
CGATACTTAAAAGGAATGGT+TGG + chr4_3:58707676-58707695 None:intergenic 35.0%
! TCATATATACGTGTGCTGTT+TGG - chr4_3:58707846-58707865 Msa0651330:intron 35.0%
!!! ATTTTTAGCTCCAAGTGTGT+AGG - chr4_3:58707962-58707981 Msa0651330:intron 35.0%
AGCCTTAATCATAACCAATG+TGG - chr4_3:58708144-58708163 Msa0651330:intron 35.0%
GCCTTAATCATAACCAATGT+GGG - chr4_3:58708145-58708164 Msa0651330:intron 35.0%
CCTTAATCATAACCAATGTG+GGG - chr4_3:58708146-58708165 Msa0651330:intron 35.0%
TATTACCCCATCGGATAAAT+AGG - chr4_3:58708208-58708227 Msa0651330:intron 35.0%
AAACTCCTATTTATCCGATG+GGG + chr4_3:58708216-58708235 None:intergenic 35.0%
GAAAACTCCTATTTATCCGA+TGG + chr4_3:58708218-58708237 None:intergenic 35.0%
TCTTATCAAATATGCTAGGC+TGG - chr4_3:58708236-58708255 Msa0651330:intron 35.0%
AAGGACAATCTATTCGCAAA+AGG + chr4_3:58708323-58708342 None:intergenic 35.0%
TAGCAAATTACGAGGCTTTA+CGG - chr4_3:58708378-58708397 Msa0651330:intron 35.0%
!!! TCAAGACCTATTTTGACCAT+AGG - chr4_3:58708404-58708423 Msa0651330:intron 35.0%
GATTCACCTATGGTCAAAAT+AGG + chr4_3:58708413-58708432 None:intergenic 35.0%
TTTGACCATAGGTGAATCTT+TGG - chr4_3:58708415-58708434 Msa0651330:intron 35.0%
TTCAACCAAAGATTCACCTA+TGG + chr4_3:58708423-58708442 None:intergenic 35.0%
!!! TGTACATCTTCGTTTTGAAG+AGG - chr4_3:58708487-58708506 Msa0651330:intron 35.0%
!! TCCTGTTGTATTTTTGATGG+TGG - chr4_3:58708640-58708659 Msa0651330:intron 35.0%
!! CCTGTTGTATTTTTGATGGT+GGG - chr4_3:58708641-58708660 Msa0651330:intron 35.0%
!!! TATTTTTGATGGTGGGAAAC+AGG - chr4_3:58708648-58708667 Msa0651330:intron 35.0%
AAAGGGAAATTTACAAAGCC+TGG - chr4_3:58708709-58708728 Msa0651330:intron 35.0%
AGGAGATAATAACCTCTAGT+GGG + chr4_3:58708786-58708805 None:intergenic 35.0%
AAGGAGATAATAACCTCTAG+TGG + chr4_3:58708787-58708806 None:intergenic 35.0%
! CACTCAACATTTGCTGAATA+AGG + chr4_3:58708909-58708928 None:intergenic 35.0%
ATGCTTTCATTTCTTCAGGT+TGG - chr4_3:58708963-58708982 Msa0651330:intron 35.0%
!! ACATCTATCTTTTTGGCATC+TGG - chr4_3:58709020-58709039 Msa0651330:intron 35.0%
! GTTTCCTAATTTGCATACGA+AGG - chr4_3:58709088-58709107 Msa0651330:intron 35.0%
GGGGACAAATAACATAACAT+GGG + chr4_3:58709167-58709186 None:intergenic 35.0%
AGGGGACAAATAACATAACA+TGG + chr4_3:58709168-58709187 None:intergenic 35.0%
CTAGAATTATTCTTCCAGGA+TGG - chr4_3:58709231-58709250 Msa0651330:intron 35.0%
AGACAATTAAGCCTGATAAG+CGG - chr4_3:58709368-58709387 Msa0651330:intron 35.0%
!!! TTTTGAATCGTCGGTTCTAT+TGG + chr4_3:58709687-58709706 None:intergenic 35.0%
CCTTTGATCTTCAAAAATGG+TGG + chr4_3:58709855-58709874 None:intergenic 35.0%
!! CCACCATTTTTGAAGATCAA+AGG - chr4_3:58709852-58709871 Msa0651330:intron 35.0%
AATGGAAAATGTTCCTTTGC+AGG - chr4_3:58709936-58709955 Msa0651330:CDS 35.0%
! CATAGCTCACTCAATGTTTT+GGG + chr4_3:58709969-58709988 None:intergenic 35.0%
! ACATAGCTCACTCAATGTTT+TGG + chr4_3:58709970-58709989 None:intergenic 35.0%
! AACGAGCTATTTAGAGTCAA+AGG - chr4_3:58710020-58710039 Msa0651330:CDS 35.0%
CCTAAAACAGACCAAGAAAA+CGG + chr4_3:58710162-58710181 None:intergenic 35.0%
GAAGAAACAGAGTTTAAGAG+TGG - chr4_3:58710386-58710405 Msa0651330:five_prime_UTR 35.0%
! ATATTTTCACCAGTTCCTCT+TGG + chr4_3:58710418-58710437 None:intergenic 35.0%
GAATGTAGGTTCGTGAAGAA+AGG + chr4_3:58704100-58704119 None:intergenic 40.0%
! ATCGTTGATCTGAAATGCAC+CGG - chr4_3:58704264-58704283 Msa0651330:three_prime_UTR 40.0%
GCCGGTATGCTTCTTTATAT+GGG - chr4_3:58704494-58704513 Msa0651330:three_prime_UTR 40.0%
GCAGGACGGTGTTTAATAAT+CGG + chr4_3:58704542-58704561 None:intergenic 40.0%
TGAATTCGATGGTGCAATGT+GGG - chr4_3:58704848-58704867 Msa0651330:CDS 40.0%
GCTTGTGGTGCTTACTATAT+TGG - chr4_3:58705170-58705189 Msa0651330:CDS 40.0%
ATTAACCTACCGCATGAATG+TGG + chr4_3:58705280-58705299 None:intergenic 40.0%
GTAAGCCAGTGTGATTTGAT+TGG - chr4_3:58705343-58705362 Msa0651330:intron 40.0%
CCTATCCAATCAAATCACAC+TGG + chr4_3:58705351-58705370 None:intergenic 40.0%
CCAGTGTGATTTGATTGGAT+AGG - chr4_3:58705348-58705367 Msa0651330:intron 40.0%
AGTGTGACATTGAGATTCGT+AGG - chr4_3:58705379-58705398 Msa0651330:intron 40.0%
GTGTGACATTGAGATTCGTA+GGG - chr4_3:58705380-58705399 Msa0651330:intron 40.0%
TTCTTCCAACAAGCATGTGT+TGG - chr4_3:58705563-58705582 Msa0651330:intron 40.0%
TTTGACCATCGAATAATCGC+TGG - chr4_3:58705851-58705870 Msa0651330:CDS 40.0%
TATCTCCAGCGATTATTCGA+TGG + chr4_3:58705859-58705878 None:intergenic 40.0%
TTCCATTCACCACCTCTATA+TGG + chr4_3:58706067-58706086 None:intergenic 40.0%
TATGCTGTAGTGCTATAGCA+CGG + chr4_3:58706194-58706213 None:intergenic 40.0%
! TAGAGCAACTTGTTCAAACG+TGG + chr4_3:58706346-58706365 None:intergenic 40.0%
ACTTGGTCAATCTACCAACA+AGG + chr4_3:58706413-58706432 None:intergenic 40.0%
TGAAGTGGTCCATTATTGTC+GGG - chr4_3:58706779-58706798 Msa0651330:intron 40.0%
ATGGTGGCTTAAATCAGCAA+AGG - chr4_3:58706976-58706995 Msa0651330:intron 40.0%
GTCTGAACTATATCTTCGGA+TGG - chr4_3:58707198-58707217 Msa0651330:intron 40.0%
GTAGATGTCCCTGAATTTAC+TGG + chr4_3:58707345-58707364 None:intergenic 40.0%
AATCTTTCCATCAGGTACTC+AGG + chr4_3:58707425-58707444 None:intergenic 40.0%
GAGTACCTGATGGAAAGATT+TGG - chr4_3:58707425-58707444 Msa0651330:intron 40.0%
ACAATTTCAGGATCAAGGCA+TGG - chr4_3:58707468-58707487 Msa0651330:intron 40.0%
ATTGGTACTTGTCCAAGGTT+AGG - chr4_3:58707620-58707639 Msa0651330:intron 40.0%
GTTTAGCAGATACAGCAACA+TGG + chr4_3:58707884-58707903 None:intergenic 40.0%
ACAATAGCACATCAGAAGAG+TGG - chr4_3:58708080-58708099 Msa0651330:intron 40.0%
ACATCAGAAGAGTGGTCAAT+TGG - chr4_3:58708088-58708107 Msa0651330:intron 40.0%
CATCAGAAGAGTGGTCAATT+GGG - chr4_3:58708089-58708108 Msa0651330:intron 40.0%
GTTATGATTAAGGCTCGATG+TGG + chr4_3:58708139-58708158 None:intergenic 40.0%
! CCCCACATTGGTTATGATTA+AGG + chr4_3:58708149-58708168 None:intergenic 40.0%
!!! CATCTTCGTTTTGAAGAGGT+TGG - chr4_3:58708491-58708510 Msa0651330:intron 40.0%
CCCACCATCAAAAATACAAC+AGG + chr4_3:58708644-58708663 None:intergenic 40.0%
ATGATTGCTGCAAGAGAAAG+AGG - chr4_3:58708682-58708701 Msa0651330:intron 40.0%
CAAGAGAAAGAGGTTGGAAA+GGG - chr4_3:58708692-58708711 Msa0651330:intron 40.0%
GGAGATAATAACCTCTAGTG+GGG + chr4_3:58708785-58708804 None:intergenic 40.0%
GTCTCCTTCGTATGCAAATT+AGG + chr4_3:58709095-58709114 None:intergenic 40.0%
! TTATGTTATTTGTCCCCTCC+AGG - chr4_3:58709170-58709189 Msa0651330:intron 40.0%
CACTGTTTGTCTTCATAGTG+AGG - chr4_3:58709267-58709286 Msa0651330:intron 40.0%
! TAACTTTCCCCATTTTCTGC+TGG - chr4_3:58709312-58709331 Msa0651330:intron 40.0%
! AACTTTCCCCATTTTCTGCT+GGG - chr4_3:58709313-58709332 Msa0651330:intron 40.0%
CACCATACAAGTATCTTCTG+TGG + chr4_3:58709339-58709358 None:intergenic 40.0%
CACAGAAGATACTTGTATGG+TGG - chr4_3:58709337-58709356 Msa0651330:intron 40.0%
AATGCTAACTTCCGCTTATC+AGG + chr4_3:58709382-58709401 None:intergenic 40.0%
AGGCATGGTCACAAAATCAT+AGG + chr4_3:58709761-58709780 None:intergenic 40.0%
AGTATCAGAAATGCACTCAG+TGG + chr4_3:58709786-58709805 None:intergenic 40.0%
TGGATCAAATATCAAGGGAG+TGG - chr4_3:58709878-58709897 Msa0651330:intron 40.0%
GATGCCAATTCAGAACAGAA+TGG - chr4_3:58709918-58709937 Msa0651330:CDS 40.0%
ACTTCACATAATGTACAGGC+AGG + chr4_3:58710068-58710087 None:intergenic 40.0%
AACAGACCAAGAAAACGGTA+TGG + chr4_3:58710157-58710176 None:intergenic 40.0%
! CCGTTTTCTTGGTCTGTTTT+AGG - chr4_3:58710159-58710178 Msa0651330:CDS 40.0%
TAAGAGTGGAAATAGCCAAG+AGG - chr4_3:58710400-58710419 Msa0651330:five_prime_UTR 40.0%
TGAAGAAAATTTCCCCGCCT+TGG + chr4_3:58704366-58704385 None:intergenic 45.0%
! GGGAAATTTTCTTCACCCTC+CGG - chr4_3:58704371-58704390 Msa0651330:three_prime_UTR 45.0%
! AAATTTTCTTCACCCTCCGG+TGG - chr4_3:58704374-58704393 Msa0651330:three_prime_UTR 45.0%
ACAGAAAAATCCCTTGTCGC+CGG + chr4_3:58704454-58704473 None:intergenic 45.0%
!! GCTCCGTTGATTTATATCGC+CGG - chr4_3:58704476-58704495 Msa0651330:three_prime_UTR 45.0%
CGCCGGTATGCTTCTTTATA+TGG - chr4_3:58704493-58704512 Msa0651330:three_prime_UTR 45.0%
GGATAACTCTTCTACCGATG+CGG - chr4_3:58704622-58704641 Msa0651330:three_prime_UTR 45.0%
GGCAAAGAAACAAACCGCAT+CGG + chr4_3:58704639-58704658 None:intergenic 45.0%
CTGAATTCGATGGTGCAATG+TGG - chr4_3:58704847-58704866 Msa0651330:CDS 45.0%
! CGAGTCTGCTCATTGATTGT+AGG - chr4_3:58705011-58705030 Msa0651330:intron 45.0%
AGGGTATGAAACCTGACAAG+AGG - chr4_3:58705399-58705418 Msa0651330:CDS 45.0%
CCAATCCAACACATGCTTGT+TGG + chr4_3:58705571-58705590 None:intergenic 45.0%
CCAACAAGCATGTGTTGGAT+TGG - chr4_3:58705568-58705587 Msa0651330:intron 45.0%
TGGAGAAGTCCATATAGAGG+TGG - chr4_3:58706055-58706074 Msa0651330:CDS 45.0%
GTCCATATAGAGGTGGTGAA+TGG - chr4_3:58706062-58706081 Msa0651330:CDS 45.0%
GCTATAGCACTACAGCATAG+CGG - chr4_3:58706195-58706214 Msa0651330:CDS 45.0%
CACATAAGTGTGAGGGCAAA+GGG + chr4_3:58706492-58706511 None:intergenic 45.0%
ACACATAAGTGTGAGGGCAA+AGG + chr4_3:58706493-58706512 None:intergenic 45.0%
GCTGCACAATCTCTATACGT+CGG + chr4_3:58706570-58706589 None:intergenic 45.0%
ATAGGTCTACCCGAGTCAAA+TGG - chr4_3:58706933-58706952 Msa0651330:intron 45.0%
TAGTTCAGACGAACCAACCT+AGG + chr4_3:58707188-58707207 None:intergenic 45.0%
GTGTTTCTTGGTATCCACGA+TGG - chr4_3:58707269-58707288 Msa0651330:intron 45.0%
CAAGATTCCTGAGTACCTGA+TGG - chr4_3:58707415-58707434 Msa0651330:CDS 45.0%
TGCTGCCAAATCTTTCCATC+AGG + chr4_3:58707433-58707452 None:intergenic 45.0%
TGTTGTGTTGCCTACACACT+TGG + chr4_3:58707975-58707994 None:intergenic 45.0%
AGAAGAGTGGTCAATTGGGA+GGG - chr4_3:58708093-58708112 Msa0651330:intron 45.0%
TATCTGTCATGTCCCCACAT+TGG + chr4_3:58708161-58708180 None:intergenic 45.0%
!! CGTAATTTGCTAAGCACCTG+AGG + chr4_3:58708370-58708389 None:intergenic 45.0%
CAGGTGCTTAGCAAATTACG+AGG - chr4_3:58708370-58708389 Msa0651330:intron 45.0%
AAGCAACCATATCCTGTGCA+TGG + chr4_3:58708618-58708637 None:intergenic 45.0%
TTGCTGCAAGAGAAAGAGGT+TGG - chr4_3:58708686-58708705 Msa0651330:intron 45.0%
GCAAGAGAAAGAGGTTGGAA+AGG - chr4_3:58708691-58708710 Msa0651330:intron 45.0%
TTGCTCCAGGACGTATGATT+CGG + chr4_3:58708735-58708754 None:intergenic 45.0%
AATAACCTCTAGTGGGGTGA+GGG + chr4_3:58708779-58708798 None:intergenic 45.0%
TAATAACCTCTAGTGGGGTG+AGG + chr4_3:58708780-58708799 None:intergenic 45.0%
TTTGCATACGAAGGAGACTC+TGG - chr4_3:58709097-58709116 Msa0651330:intron 45.0%
ATAGAACTACCAGTCCTGGA+GGG + chr4_3:58709187-58709206 None:intergenic 45.0%
AACCATAGAACTACCAGTCC+TGG + chr4_3:58709191-58709210 None:intergenic 45.0%
GTAATCTATAGCAGCCATCC+TGG + chr4_3:58709248-58709267 None:intergenic 45.0%
GGCCACAGAAGATACTTGTA+TGG - chr4_3:58709334-58709353 Msa0651330:intron 45.0%
ACGCTTGAAACTTCTCCATC+TGG + chr4_3:58709561-58709580 None:intergenic 45.0%
AGGTCACACAGTGATTCCAA+GGG - chr4_3:58709596-58709615 Msa0651330:intron 45.0%
! TCTTTTCAGCTCAACTCCCT+TGG + chr4_3:58709615-58709634 None:intergenic 45.0%
!! AATCGTCGGTTCTATTGGCA+CGG + chr4_3:58709682-58709701 None:intergenic 45.0%
TCAGCAGCTTGATCTACTCA+TGG - chr4_3:58709713-58709732 Msa0651330:intron 45.0%
TTTGGGAGAGATTCCTGCAA+AGG + chr4_3:58709952-58709971 None:intergenic 45.0%
AATGTACAGGCAGGTTGTGA+AGG + chr4_3:58710059-58710078 None:intergenic 45.0%
CAACTAGACCCTCAATGTGA+AGG + chr4_3:58710233-58710252 None:intergenic 45.0%
TGGAAATAGCCAAGAGGAAC+TGG - chr4_3:58710406-58710425 Msa0651330:five_prime_UTR 45.0%
!! GCTGAGTTGGATGCTGCTTT+CGG - chr4_3:58704421-58704440 Msa0651330:three_prime_UTR 50.0%
ATTAAACACCGTCCTGCTCC+TGG - chr4_3:58704545-58704564 Msa0651330:three_prime_UTR 50.0%
TTTGGCCACATTCATGCGGT+AGG - chr4_3:58705272-58705291 Msa0651330:CDS 50.0%
!! GAAACCTGACAAGAGGTGCT+TGG - chr4_3:58705406-58705425 Msa0651330:CDS 50.0%
CTTACCAAGCACCTCTTGTC+AGG + chr4_3:58705413-58705432 None:intergenic 50.0%
!! CTGACAAGAGGTGCTTGGTA+AGG - chr4_3:58705411-58705430 Msa0651330:CDS 50.0%
! GAGGTGCTTGGTAAGGAAGT+CGG - chr4_3:58705418-58705437 Msa0651330:CDS 50.0%
AGGTGCTTGGTAAGGAAGTC+GGG - chr4_3:58705419-58705438 Msa0651330:CDS 50.0%
CCTAGGGACGAGAGAATACA+AGG + chr4_3:58705601-58705620 None:intergenic 50.0%
CCTTGTATTCTCTCGTCCCT+AGG - chr4_3:58705598-58705617 Msa0651330:intron 50.0%
CGCACACACAGACACATGAT+TGG + chr4_3:58705889-58705908 None:intergenic 50.0%
TACGTCGGTATGACTCAGCA+AGG + chr4_3:58706555-58706574 None:intergenic 50.0%
TAGATAGCCAGCCACAGCAA+CGG + chr4_3:58707114-58707133 None:intergenic 50.0%
!! CCACCCGCACATCATTTTTC+AGG + chr4_3:58707391-58707410 None:intergenic 50.0%
CCTGAAAAATGATGTGCGGG+TGG - chr4_3:58707388-58707407 Msa0651330:CDS 50.0%
GGGTGATTGGTACTTGTCCA+AGG - chr4_3:58707615-58707634 Msa0651330:intron 50.0%
!! ATACGTGTGCTGTTTGGAGC+TGG - chr4_3:58707852-58707871 Msa0651330:intron 50.0%
CAGAAGAGTGGTCAATTGGG+AGG - chr4_3:58708092-58708111 Msa0651330:intron 50.0%
GGCTCGATGTGGTACTTAAG+TGG + chr4_3:58708128-58708147 None:intergenic 50.0%
!! GACAACTGGAGGAGCATCAA+AGG + chr4_3:58708342-58708361 None:intergenic 50.0%
! AGAGAGCGTAGTGCCGTTAA+TGG - chr4_3:58708449-58708468 Msa0651330:CDS 50.0%
ATACACTGCTCTCCATGCAC+AGG - chr4_3:58708603-58708622 Msa0651330:intron 50.0%
TGCTCTCCATGCACAGGATA+TGG - chr4_3:58708609-58708628 Msa0651330:intron 50.0%
TCATACGTCCTGGAGCAATC+AGG - chr4_3:58708737-58708756 Msa0651330:intron 50.0%
CCTGGAGCAATCAGGATCAA+CGG - chr4_3:58708745-58708764 Msa0651330:intron 50.0%
CTGGAGCAATCAGGATCAAC+GGG - chr4_3:58708746-58708765 Msa0651330:intron 50.0%
ATAACCTCTAGTGGGGTGAG+GGG + chr4_3:58708778-58708797 None:intergenic 50.0%
TTATTTGTCCCCTCCAGGAC+TGG - chr4_3:58709175-58709194 Msa0651330:intron 50.0%
TAGAACTACCAGTCCTGGAG+GGG + chr4_3:58709186-58709205 None:intergenic 50.0%
CATAGAACTACCAGTCCTGG+AGG + chr4_3:58709188-58709207 None:intergenic 50.0%
! CTCCAGGACTGGTAGTTCTA+TGG - chr4_3:58709186-58709205 Msa0651330:intron 50.0%
ATGGGGAAAGTTACCACCCT+GGG + chr4_3:58709305-58709324 None:intergenic 50.0%
AATGGGGAAAGTTACCACCC+TGG + chr4_3:58709306-58709325 None:intergenic 50.0%
TCTGTGGCCCAGCAGAAAAT+GGG + chr4_3:58709323-58709342 None:intergenic 50.0%
TTCTGTGGCCCAGCAGAAAA+TGG + chr4_3:58709324-58709343 None:intergenic 50.0%
AGCGTCAACTGCTGAACATG+AGG - chr4_3:58709576-58709595 Msa0651330:intron 50.0%
GAGGTCACACAGTGATTCCA+AGG - chr4_3:58709595-58709614 Msa0651330:intron 50.0%
CGGCACATACATTCTGGACA+TGG + chr4_3:58709662-58709681 None:intergenic 50.0%
TTGGCACGGCACATACATTC+TGG + chr4_3:58709668-58709687 None:intergenic 50.0%
CAGAAATGCACTCAGTGGCA+AGG + chr4_3:58709781-58709800 None:intergenic 50.0%
! TATTTTCCCCCCTTCCCATC+CGG - chr4_3:58709816-58709835 Msa0651330:intron 50.0%
! GTCCTGCCATACCGTTTTCT+TGG - chr4_3:58710148-58710167 Msa0651330:CDS 50.0%
GACCAAGAAAACGGTATGGC+AGG + chr4_3:58710153-58710172 None:intergenic 50.0%
AGCGGAGATTGCGGAGATGA+CGG + chr4_3:58704314-58704333 None:intergenic 55.0%
! TTTTCTTCACCCTCCGGTGG+AGG - chr4_3:58704377-58704396 Msa0651330:three_prime_UTR 55.0%
TAAACTCCTCCCTCCTCCAC+CGG + chr4_3:58704393-58704412 None:intergenic 55.0%
GTTTAGCGCAGAGGCTGAGT+TGG - chr4_3:58704408-58704427 Msa0651330:three_prime_UTR 55.0%
!! TGCTGCTTTCGGTGCTTCTC+CGG - chr4_3:58704432-58704451 Msa0651330:three_prime_UTR 55.0%
GGACTACGATAAAGCGAGCC+AGG + chr4_3:58704566-58704585 None:intergenic 55.0%
TAAGGAAGTCGGGTGTCCGT+AGG - chr4_3:58705429-58705448 Msa0651330:CDS 55.0%
GGTATGCAATGCCGTTGCTG+TGG - chr4_3:58707100-58707119 Msa0651330:CDS 55.0%
! GAGCGTAGTGCCGTTAATGG+CGG - chr4_3:58708452-58708471 Msa0651330:CDS 55.0%
CCGTTGATCCTGATTGCTCC+AGG + chr4_3:58708748-58708767 None:intergenic 55.0%
!! TTCAGGTTGGCCTGATGCTG+AGG - chr4_3:58708976-58708995 Msa0651330:intron 55.0%
!! TCAGGTTGGCCTGATGCTGA+GGG - chr4_3:58708977-58708996 Msa0651330:intron 55.0%
AACCCATTCCCCTCAGCATC+AGG + chr4_3:58708989-58709008 None:intergenic 55.0%
! GGAGACTCTGGCTTCTGAAG+AGG - chr4_3:58709109-58709128 Msa0651330:intron 55.0%
! TGAGGTGTTCGTCACAACCC+AGG - chr4_3:58709285-58709304 Msa0651330:intron 55.0%
! GAGGTGTTCGTCACAACCCA+GGG - chr4_3:58709286-58709305 Msa0651330:intron 55.0%
CTGTGGCCCAGCAGAAAATG+GGG + chr4_3:58709322-58709341 None:intergenic 55.0%
ATGCACTCAGTGGCAAGGCA+TGG + chr4_3:58709776-58709795 None:intergenic 55.0%
GGTATGCCTTCTCACCGGAT+GGG + chr4_3:58709833-58709852 None:intergenic 55.0%
! TGGTGGGTATGCCTTCTCAC+CGG + chr4_3:58709838-58709857 None:intergenic 55.0%
AAAACGGTATGGCAGGACCC+TGG + chr4_3:58710146-58710165 None:intergenic 55.0%
CATCTCCGCAATCTCCGCTC+CGG - chr4_3:58704315-58704334 Msa0651330:three_prime_UTR 60.0%
GAGGGAGGAGTTTAGCGCAG+AGG - chr4_3:58704399-58704418 Msa0651330:three_prime_UTR 60.0%
AAAGCGAGCCAGGAGCAGGA+CGG + chr4_3:58704556-58704575 None:intergenic 60.0%
CGATAAAGCGAGCCAGGAGC+AGG + chr4_3:58704560-58704579 None:intergenic 60.0%
TGCAATGCCGTTGCTGTGGC+TGG - chr4_3:58707104-58707123 Msa0651330:CDS 60.0%
TTGCTAAGCACCTGAGGCGC+TGG + chr4_3:58708364-58708383 None:intergenic 60.0%
! CCAGGACGTATGATTCGGCC+AGG + chr4_3:58708730-58708749 None:intergenic 60.0%
CCTGGCCGAATCATACGTCC+TGG - chr4_3:58708727-58708746 Msa0651330:intron 60.0%
!! CAGGTTGGCCTGATGCTGAG+GGG - chr4_3:58708978-58708997 Msa0651330:intron 60.0%
TGGCCTGATGCTGAGGGGAA+TGG - chr4_3:58708983-58709002 Msa0651330:intron 60.0%
GGCCTGATGCTGAGGGGAAT+GGG - chr4_3:58708984-58709003 Msa0651330:intron 60.0%
GTGTTCGTCACAACCCAGGG+TGG - chr4_3:58709289-58709308 Msa0651330:intron 60.0%
TTCTCACCGGATGGGAAGGG+GGG + chr4_3:58709825-58709844 None:intergenic 60.0%
CTTCTCACCGGATGGGAAGG+GGG + chr4_3:58709826-58709845 None:intergenic 60.0%
CCTTCTCACCGGATGGGAAG+GGG + chr4_3:58709827-58709846 None:intergenic 60.0%
GCCTTCTCACCGGATGGGAA+GGG + chr4_3:58709828-58709847 None:intergenic 60.0%
TGCCTTCTCACCGGATGGGA+AGG + chr4_3:58709829-58709848 None:intergenic 60.0%
GGGTATGCCTTCTCACCGGA+TGG + chr4_3:58709834-58709853 None:intergenic 60.0%
!! ATGCACCGGCTACCGAGCAG+CGG - chr4_3:58704278-58704297 Msa0651330:three_prime_UTR 65.0%
AATGCCCGCTGCTCGGTAGC+CGG + chr4_3:58704286-58704305 None:intergenic 65.0%
TCTTCACCCTCCGGTGGAGG+AGG - chr4_3:58704380-58704399 Msa0651330:three_prime_UTR 65.0%
CTTCACCCTCCGGTGGAGGA+GGG - chr4_3:58704381-58704400 Msa0651330:three_prime_UTR 65.0%
! TCGGTGCTTCTCCGGCGACA+AGG - chr4_3:58704440-58704459 Msa0651330:three_prime_UTR 65.0%
CGGTGCTTCTCCGGCGACAA+GGG - chr4_3:58704441-58704460 Msa0651330:three_prime_UTR 65.0%
!! CTGAGGCGCTGGACAACTGG+AGG + chr4_3:58708353-58708372 None:intergenic 65.0%
CTCCAGTTGTCCAGCGCCTC+AGG - chr4_3:58708351-58708370 Msa0651330:intron 65.0%
!! CACCTGAGGCGCTGGACAAC+TGG + chr4_3:58708356-58708375 None:intergenic 65.0%
GTGTCCCCTCACCCCACTAG+AGG - chr4_3:58708771-58708790 Msa0651330:intron 65.0%
CCCCTTCCCATCCGGTGAGA+AGG - chr4_3:58709824-58709843 Msa0651330:intron 65.0%
!! TGCACCGGCTACCGAGCAGC+GGG - chr4_3:58704279-58704298 Msa0651330:three_prime_UTR 70.0%
! GGCGTCGAATGCCCGCTGCT+CGG + chr4_3:58704293-58704312 None:intergenic 70.0%
GGCGACCGGAGCGGAGATTG+CGG + chr4_3:58704323-58704342 None:intergenic 70.0%
CTCCTCCCTCCTCCACCGGA+GGG + chr4_3:58704389-58704408 None:intergenic 70.0%
ACTCCTCCCTCCTCCACCGG+AGG + chr4_3:58704390-58704409 None:intergenic 70.0%
CCTTGGACCGCCCTTGCCGG+AGG + chr4_3:58704349-58704368 None:intergenic 75.0%
CCTCCGGCAAGGGCGGTCCA+AGG - chr4_3:58704346-58704365 Msa0651330:three_prime_UTR 75.0%
CCGCCTTGGACCGCCCTTGC+CGG + chr4_3:58704352-58704371 None:intergenic 75.0%
CCGGCAAGGGCGGTCCAAGG+CGG - chr4_3:58704349-58704368 Msa0651330:three_prime_UTR 75.0%
CGGCAAGGGCGGTCCAAGGC+GGG - chr4_3:58704350-58704369 Msa0651330:three_prime_UTR 75.0%
GGCAAGGGCGGTCCAAGGCG+GGG - chr4_3:58704351-58704370 Msa0651330:three_prime_UTR 75.0%
CACCCTCCGGTGGAGGAGGG+AGG - chr4_3:58704384-58704403 Msa0651330:three_prime_UTR 75.0%
!! CTTGCCGGAGGCGCGGCGAC+CGG + chr4_3:58704337-58704356 None:intergenic 80.0%
! GGTCGCCGCGCCTCCGGCAA+GGG - chr4_3:58704336-58704355 Msa0651330:three_prime_UTR 80.0%
! GACCGCCCTTGCCGGAGGCG+CGG + chr4_3:58704344-58704363 None:intergenic 80.0%
!! CGGAGGCGCGGCGACCGGAG+CGG + chr4_3:58704332-58704351 None:intergenic 85.0%
! CGCTCCGGTCGCCGCGCCTC+CGG - chr4_3:58704330-58704349 Msa0651330:three_prime_UTR 85.0%
! CGGTCGCCGCGCCTCCGGCA+AGG - chr4_3:58704335-58704354 Msa0651330:three_prime_UTR 85.0%
! CGCCGCGCCTCCGGCAAGGG+CGG - chr4_3:58704339-58704358 Msa0651330:three_prime_UTR 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 58704038 58710505 58704038 ID=Msa0651330;Name=Msa0651330
chr4_3 mRNA 58704038 58710505 58704038 ID=Msa0651330-mRNA-1;Parent=Msa0651330;Name=Msa0651330-mRNA-1;_AED=0.07;_eAED=0.07;_QI=240|1|1|1|1|1|10|781|561
chr4_3 exon 58704038 58704981 58704038 ID=Msa0651330-mRNA-1:exon:15633;Parent=Msa0651330-mRNA-1
chr4_3 exon 58705118 58705308 58705118 ID=Msa0651330-mRNA-1:exon:15632;Parent=Msa0651330-mRNA-1
chr4_3 exon 58705395 58705562 58705395 ID=Msa0651330-mRNA-1:exon:15631;Parent=Msa0651330-mRNA-1
chr4_3 exon 58705751 58705918 58705751 ID=Msa0651330-mRNA-1:exon:15630;Parent=Msa0651330-mRNA-1
chr4_3 exon 58706035 58706239 58706035 ID=Msa0651330-mRNA-1:exon:15629;Parent=Msa0651330-mRNA-1
chr4_3 exon 58707000 58707197 58707000 ID=Msa0651330-mRNA-1:exon:15628;Parent=Msa0651330-mRNA-1
chr4_3 exon 58707354 58707442 58707354 ID=Msa0651330-mRNA-1:exon:15627;Parent=Msa0651330-mRNA-1
chr4_3 exon 58707539 58707606 58707539 ID=Msa0651330-mRNA-1:exon:15626;Parent=Msa0651330-mRNA-1
chr4_3 exon 58708431 58708500 58708431 ID=Msa0651330-mRNA-1:exon:15625;Parent=Msa0651330-mRNA-1
chr4_3 exon 58709900 58710505 58709900 ID=Msa0651330-mRNA-1:exon:15624;Parent=Msa0651330-mRNA-1
chr4_3 five_prime_UTR 58710266 58710505 58710266 ID=Msa0651330-mRNA-1:five_prime_utr;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58709900 58710265 58709900 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58708431 58708500 58708431 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58707539 58707606 58707539 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58707354 58707442 58707354 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58707000 58707197 58707000 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58706035 58706239 58706035 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58705751 58705918 58705751 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58705395 58705562 58705395 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58705118 58705308 58705118 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 CDS 58704819 58704981 58704819 ID=Msa0651330-mRNA-1:cds;Parent=Msa0651330-mRNA-1
chr4_3 three_prime_UTR 58704038 58704818 58704038 ID=Msa0651330-mRNA-1:three_prime_utr;Parent=Msa0651330-mRNA-1
Gene Sequence

>Msa0651330

ATGCACCGGCTACCGAGCAGCGGGCATTCGACGCCGTCATCTCCGCAATCTCCGCTCCGGTCGCCGCGCCTCCGGCAAGGGCGGTCCAAGGCGGGGAAATTTTCTTCACCCTCCGGTGGAGGAGGGAGGAGTTTAGCGCAGAGGCTGAGTTGGATGCTGCTTTCGGTGCTTCTCCGGCGACAAGGGATTTTTCTGTTTGCTCCGTTGATTTATATCGCCGGTATGCTTCTTTATATGGGAACGGCGTCGTTTGATGTTGTTCCGATTATTAAACACCGTCCTGCTCCTGGCTCGCTTTATCGTAGTCCTCAGCTTTATTCTAATCTGAAAAAGGATATGGATTCGGATAACTCTTCTACCGATGCGATATCTACAATATGGAGAAGTCCATATAGAGGTGGTGAATGGAAACCATGTGTAAATAGATCTTCAGAAGGTCTACCCGAGTCAAATGGATACATATATGTAGAGGCTAATGGTGGCTTAAATCAGCAAAGGACATCGGTATGCAATGCCGTTGCTGTGGCTGGCTATCTAAACGCTACCCTTGTGATTCCAAACTTCCATTATCATAGTATATGGAAAGATCCTAGTAAATTCAGGGACATCTACGATGAAGAATATTTTGTCGATATCCTGAAAAATGATGTGCGGGTGGTTGACAAGATTCCTGAGTACCTGATGGAAAGATTTGGCAGCAACATGACAAATGTTCACAATTTCAGGATCAAGGCATGGTCATCCATTCAGTATTATAGAGATGTGGTGCTCCCAAAGTTACTTGAAGAAAAGGTTATAAGAATTTCTCCTTTTGCGAATAGATTGTCCTTTGATGCTCCTCCAGTTGTCCAGCGCCTCAGGTGCTTAGCAAATTACGAGGCTTTACGGTTTTCAAGACCTATTTTGACCATAGGTGAATCTTTGGTTGAAAGAATGAGAGAGCGTAGTGCCGTTAATGGCGGTAAATATGTTTCTGTACATCTTCGTTTTGAAGAGGATATGGTTGCTTTCTCCTGTTGTATTTTTGATGGTGGGAAACAGGAGAAACAAGACATGATTGCTGCAAGAGAAAGAGGTTGGAAAGGGAAATTTACAAAGCCTGGCCGAATCATACGTCCTGGAGCAATCAGGATCAACGGGAAGTGTCCCCTCACCCCACTAGAGGTTGGCCTGATGCTGAGGGGAATGGGTTTTACGAAGAACACATCTATCTTTTTGGCATCTGGAATAATATATAATGCTGAGAAAACAATGGCTCCACTACTACAAATGTTTCCTAATTTGCATACGAAGGAGACTCTGGCTTCTGAAGAGGAACTTTCTACATTTAGGAATTATTCTTCCAGGATGGCTGCTATAGATTACACTGTTTGTCTTCATAGTGAGGTGTTCGTCACAACCCAGGGTGGTAACTTTCCCCATTTTCTGCTGGGCCACAGAAGATACTTGTATGGTGGACACTCTAAGACAATTAAGCCTGATAAGCGGAAGTTAGCATTGCTCTTTGATAATCCCAATATAGGATGGAGAAGTTTCAAGCGTCAACTGCTGAACATGAGGTCACACAGTGATTCCAAGGGAGTTGAGCTGAAAAGACCAAATGACTCTATATACAGCTTTCCATGTCCAGAATGTATGTGCCGTGCCAATAGAACCGACGATTCAAAATCTTCATCAGCAGCTTGA
Protein sequence

>Msa0651330

MHRLPSSGHSTPSSPQSPLRSPRLRQGRSKAGKFSSPSGGGGRSLAQRLSWMLLSVLLRRQGIFLFAPLIYIAGMLLYMGTASFDVVPIIKHRPAPGSLYRSPQLYSNLKKDMDSDNSSTDAISTIWRSPYRGGEWKPCVNRSSEGLPESNGYIYVEANGGLNQQRTSVCNAVAVAGYLNATLVIPNFHYHSIWKDPSKFRDIYDEEYFVDILKNDVRVVDKIPEYLMERFGSNMTNVHNFRIKAWSSIQYYRDVVLPKLLEEKVIRISPFANRLSFDAPPVVQRLRCLANYEALRFSRPILTIGESLVERMRERSAVNGGKYVSVHLRFEEDMVAFSCCIFDGGKQEKQDMIAARERGWKGKFTKPGRIIRPGAIRINGKCPLTPLEVGLMLRGMGFTKNTSIFLASGIIYNAEKTMAPLLQMFPNLHTKETLASEEELSTFRNYSSRMAAIDYTVCLHSEVFVTTQGGNFPHFLLGHRRYLYGGHSKTIKPDKRKLALLFDNPNIGWRSFKRQLLNMRSHSDSKGVELKRPNDSIYSFPCPECMCRANRTDDSKSSSAA*