Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651510 | XP_003607934.1 | 94.098 | 305 | 17 | 1 | 1 | 305 | 1 | 304 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651510 | sp|Q9FXA3|BH095_ARATH | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.43e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0651510 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611170 | Msa0651510 | 0.841783 | 3.853626e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651510 | MtrunA17_Chr4g0044621 | 89.869 | 306 | 29 | 2 | 1 | 305 | 1 | 305 | 0.0 | 509 |
| Msa0651510 | MtrunA17_Chr4g0044611 | 93.548 | 279 | 17 | 1 | 1 | 279 | 1 | 278 | 1.72e-177 | 492 |
| Msa0651510 | MtrunA17_Chr4g0042511 | 43.214 | 280 | 121 | 7 | 1 | 279 | 1 | 243 | 4.18e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0651510 | AT1G49770.1 | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.57e-43 | 149 |
Find 63 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4_3:+58955159 | None:intergenic |
| TCACCTAAATTATCAGAATT+TGG | 0.105182 | 4_3:+58955218 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4_3:-58953944 | Msa0651510:CDS |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.231106 | 4_3:-58954955 | Msa0651510:intron |
| CTCCCAAATTCTGATAATTT+AGG | 0.240479 | 4_3:-58955221 | Msa0651510:CDS |
| GAAAATGAATTTACCTTAGA+AGG | 0.295761 | 4_3:+58954942 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_3:+58954239 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4_3:+58955167 | None:intergenic |
| CACCTAAATTATCAGAATTT+GGG | 0.327226 | 4_3:+58955219 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4_3:-58954297 | Msa0651510:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4_3:+58954129 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4_3:-58955265 | Msa0651510:CDS |
| TTTACCTTAGAAGGAAGTTC+AGG | 0.386490 | 4_3:+58954951 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4_3:-58954022 | Msa0651510:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4_3:-58954296 | Msa0651510:CDS |
| CGGTTTCTCTTCTTCCTCAC+CGG | 0.413966 | 4_3:+58955128 | None:intergenic |
| ATTGAAAATGCATTATTTGA+AGG | 0.414433 | 4_3:+58954153 | None:intergenic |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4_3:-58955264 | Msa0651510:CDS |
| CGGTGAGGAAGAAGAGAAAC+CGG | 0.442669 | 4_3:-58955127 | Msa0651510:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4_3:+58954283 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_3:-58955004 | Msa0651510:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4_3:+58954282 | None:intergenic |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4_3:-58954320 | Msa0651510:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4_3:-58953611 | Msa0651510:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4_3:-58955275 | Msa0651510:CDS |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4_3:+58954014 | None:intergenic |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4_3:-58955249 | Msa0651510:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4_3:-58955250 | Msa0651510:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_3:+58954240 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4_3:-58954016 | Msa0651510:CDS |
| GAAGAAGAGAAACCGGGGTG+GGG | 0.528579 | 4_3:-58955120 | Msa0651510:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_3:-58954248 | Msa0651510:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_3:-58954045 | Msa0651510:CDS |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4_3:+58954377 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_3:-58954225 | Msa0651510:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_3:+58954967 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_3:+58954959 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_3:-58955019 | Msa0651510:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4_3:+58953966 | None:intergenic |
| GGAAGAAGAGAAACCGGGGT+GGG | 0.561203 | 4_3:-58955121 | Msa0651510:CDS |
| AATCAACGAAGGAGATGCTC+CGG | 0.562362 | 4_3:-58955147 | Msa0651510:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4_3:-58953633 | Msa0651510:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_3:-58955170 | Msa0651510:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_3:+58954027 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4_3:-58954132 | Msa0651510:CDS |
| GGTGAGGAAGAAGAGAAACC+GGG | 0.579068 | 4_3:-58955126 | Msa0651510:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4_3:+58954200 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4_3:-58955287 | Msa0651510:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4_3:+58955289 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_3:-58954247 | Msa0651510:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4_3:-58954087 | Msa0651510:CDS |
| TTCTAATTACAACCCCACCC+CGG | 0.641970 | 4_3:+58955108 | None:intergenic |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4_3:-58955158 | Msa0651510:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4_3:+58954284 | None:intergenic |
| AGGAAGAAGAGAAACCGGGG+TGG | 0.676084 | 4_3:-58955122 | Msa0651510:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4_3:-58953615 | Msa0651510:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4_3:-58953595 | Msa0651510:CDS |
| ACGAAGGAGATGCTCCGGTG+AGG | 0.689033 | 4_3:-58955142 | Msa0651510:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4_3:-58955248 | Msa0651510:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4_3:+58955233 | None:intergenic |
| GTGAGGAAGAAGAGAAACCG+GGG | 0.718521 | 4_3:-58955125 | Msa0651510:CDS |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4_3:-58954084 | Msa0651510:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_3:-58954266 | Msa0651510:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4_3:58954467-58954486 | Msa0651510:intron | 10.0% |
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4_3:58954467-58954486 | Msa0651510:intron | 10.0% |
| !! | AATATAACAAAATGATAAAG+AGG | + | chr4_3:58954986-58955005 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4_3:58955048-58955067 | Msa0651510:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4_3:58955141-58955160 | None:intergenic | 15.0% |
| !! | AATATAACAAAATGATAAAG+AGG | + | chr4_3:58954986-58955005 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4_3:58955048-58955067 | Msa0651510:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4_3:58955141-58955160 | None:intergenic | 15.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4_3:58954042-58954061 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4_3:58954043-58954062 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | + | chr4_3:58954226-58954245 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4_3:58954530-58954549 | Msa0651510:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4_3:58954682-58954701 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | + | chr4_3:58954729-58954748 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4_3:58954935-58954954 | Msa0651510:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4_3:58955079-58955098 | None:intergenic | 20.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4_3:58954042-58954061 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4_3:58954043-58954062 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | + | chr4_3:58954226-58954245 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4_3:58954530-58954549 | Msa0651510:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4_3:58954682-58954701 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | + | chr4_3:58954729-58954748 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4_3:58954935-58954954 | Msa0651510:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4_3:58955079-58955098 | None:intergenic | 20.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | + | chr4_3:58953663-58953682 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | + | chr4_3:58953664-58953683 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4_3:58953940-58953959 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4_3:58954401-58954420 | Msa0651510:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4_3:58954792-58954811 | Msa0651510:intron | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4_3:58955074-58955093 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4_3:58955210-58955229 | Msa0651510:CDS | 25.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | + | chr4_3:58953663-58953682 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | + | chr4_3:58953664-58953683 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4_3:58953940-58953959 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4_3:58954401-58954420 | Msa0651510:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4_3:58954792-58954811 | Msa0651510:intron | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4_3:58955074-58955093 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4_3:58955210-58955229 | Msa0651510:CDS | 25.0% |
| CTCCCAAATTCTGATAATTT+AGG | - | chr4_3:58953658-58953677 | Msa0651510:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_3:58953860-58953879 | Msa0651510:intron | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4_3:58954172-58954191 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4_3:58954446-58954465 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4_3:58954559-58954578 | Msa0651510:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4_3:58954760-58954779 | Msa0651510:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_3:58954961-58954980 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_3:58954978-58954997 | None:intergenic | 30.0% | |
| CTCCCAAATTCTGATAATTT+AGG | - | chr4_3:58953658-58953677 | Msa0651510:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_3:58953860-58953879 | Msa0651510:intron | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4_3:58954172-58954191 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4_3:58954446-58954465 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4_3:58954559-58954578 | Msa0651510:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4_3:58954760-58954779 | Msa0651510:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_3:58954961-58954980 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_3:58954978-58954997 | None:intergenic | 30.0% | |
| TTGATCATGATCTACACTCA+TGG | + | chr4_3:58953593-58953612 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4_3:58953592-58953611 | Msa0651510:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4_3:58953615-58953634 | Msa0651510:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_3:58953629-58953648 | Msa0651510:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_3:58953630-58953649 | Msa0651510:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4_3:58953631-58953650 | Msa0651510:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_3:58953709-58953728 | Msa0651510:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_3:58953715-58953734 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_3:58953875-58953894 | Msa0651510:intron | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | + | chr4_3:58953931-58953950 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | + | chr4_3:58954119-58954138 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4_3:58954138-58954157 | Msa0651510:CDS | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4_3:58954139-58954158 | Msa0651510:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4_3:58954171-58954190 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4_3:58954265-58954284 | Msa0651510:CDS | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | + | chr4_3:58954328-58954347 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | + | chr4_3:58954351-58954370 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4_3:58954352-58954371 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4_3:58954583-58954602 | Msa0651510:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_3:58954642-58954661 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4_3:58954747-58954766 | Msa0651510:intron | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4_3:58954753-58954772 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | - | chr4_3:58954795-58954814 | Msa0651510:intron | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4_3:58954916-58954935 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_3:58954962-58954981 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | + | chr4_3:58953593-58953612 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4_3:58953592-58953611 | Msa0651510:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4_3:58953615-58953634 | Msa0651510:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_3:58953629-58953648 | Msa0651510:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_3:58953630-58953649 | Msa0651510:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4_3:58953631-58953650 | Msa0651510:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_3:58953709-58953728 | Msa0651510:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_3:58953715-58953734 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_3:58953875-58953894 | Msa0651510:intron | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | + | chr4_3:58953931-58953950 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | + | chr4_3:58954119-58954138 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4_3:58954138-58954157 | Msa0651510:CDS | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4_3:58954139-58954158 | Msa0651510:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4_3:58954171-58954190 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4_3:58954265-58954284 | Msa0651510:CDS | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | + | chr4_3:58954328-58954347 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | + | chr4_3:58954351-58954370 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4_3:58954352-58954371 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4_3:58954583-58954602 | Msa0651510:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_3:58954642-58954661 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4_3:58954747-58954766 | Msa0651510:intron | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4_3:58954753-58954772 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | - | chr4_3:58954795-58954814 | Msa0651510:intron | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4_3:58954916-58954935 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_3:58954962-58954981 | None:intergenic | 35.0% |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4_3:58953614-58953633 | Msa0651510:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4_3:58953723-58953742 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4_3:58953721-58953740 | Msa0651510:intron | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | + | chr4_3:58954118-58954137 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | + | chr4_3:58954120-58954139 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4_3:58954142-58954161 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4_3:58954168-58954187 | Msa0651510:CDS | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | + | chr4_3:58954313-58954332 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | + | chr4_3:58954329-58954348 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4_3:58954348-58954367 | Msa0651510:CDS | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4_3:58954505-58954524 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4_3:58954582-58954601 | Msa0651510:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_3:58954643-58954662 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_3:58954654-58954673 | Msa0651510:intron | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_3:58954834-58954853 | Msa0651510:intron | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_3:58954857-58954876 | Msa0651510:intron | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4_3:58955246-58955265 | Msa0651510:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4_3:58955264-58955283 | Msa0651510:CDS | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4_3:58953614-58953633 | Msa0651510:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4_3:58953723-58953742 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4_3:58953721-58953740 | Msa0651510:intron | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | + | chr4_3:58954118-58954137 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | + | chr4_3:58954120-58954139 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4_3:58954142-58954161 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4_3:58954168-58954187 | Msa0651510:CDS | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | + | chr4_3:58954313-58954332 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | + | chr4_3:58954329-58954348 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4_3:58954348-58954367 | Msa0651510:CDS | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4_3:58954505-58954524 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4_3:58954582-58954601 | Msa0651510:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_3:58954643-58954662 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_3:58954654-58954673 | Msa0651510:intron | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_3:58954834-58954853 | Msa0651510:intron | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_3:58954857-58954876 | Msa0651510:intron | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4_3:58955246-58955265 | Msa0651510:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4_3:58955264-58955283 | Msa0651510:CDS | 40.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4_3:58953604-58953623 | Msa0651510:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | - | chr4_3:58953732-58953751 | Msa0651510:intron | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | + | chr4_3:58953774-58953793 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_3:58953923-58953942 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_3:58953924-58953943 | Msa0651510:intron | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | - | chr4_3:58954101-58954120 | Msa0651510:CDS | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4_3:58954145-58954164 | Msa0651510:CDS | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4_3:58954166-58954185 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | - | chr4_3:58954308-58954327 | Msa0651510:CDS | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | + | chr4_3:58954325-58954344 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | + | chr4_3:58954598-58954617 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4_3:58954599-58954618 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4_3:58954600-58954619 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_3:58954613-58954632 | Msa0651510:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_3:58954631-58954650 | Msa0651510:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_3:58954632-58954651 | Msa0651510:intron | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4_3:58954863-58954882 | Msa0651510:intron | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4_3:58954868-58954887 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4_3:58955284-58955303 | Msa0651510:CDS | 45.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4_3:58953604-58953623 | Msa0651510:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | - | chr4_3:58953732-58953751 | Msa0651510:intron | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | + | chr4_3:58953774-58953793 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_3:58953923-58953942 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_3:58953924-58953943 | Msa0651510:intron | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | - | chr4_3:58954101-58954120 | Msa0651510:CDS | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4_3:58954145-58954164 | Msa0651510:CDS | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4_3:58954166-58954185 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | - | chr4_3:58954308-58954327 | Msa0651510:CDS | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | + | chr4_3:58954325-58954344 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | + | chr4_3:58954598-58954617 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4_3:58954599-58954618 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4_3:58954600-58954619 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_3:58954613-58954632 | Msa0651510:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_3:58954631-58954650 | Msa0651510:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_3:58954632-58954651 | Msa0651510:intron | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4_3:58954863-58954882 | Msa0651510:intron | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4_3:58954868-58954887 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4_3:58955284-58955303 | Msa0651510:CDS | 45.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4_3:58953649-58953668 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | + | chr4_3:58953754-58953773 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | - | chr4_3:58953752-58953771 | Msa0651510:intron | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | - | chr4_3:58953753-58953772 | Msa0651510:intron | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | - | chr4_3:58953754-58953773 | Msa0651510:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_3:58953915-58953934 | None:intergenic | 50.0% | |
| ACCTTCGAAGTTTGGCAGTG+AGG | - | chr4_3:58954273-58954292 | Msa0651510:CDS | 50.0% | |
| ACCTCACTGCCAAACTTCGA+AGG | + | chr4_3:58954277-58954296 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_3:58954855-58954874 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | - | chr4_3:58955268-58955287 | Msa0651510:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4_3:58953649-58953668 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | + | chr4_3:58953754-58953773 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | - | chr4_3:58953752-58953771 | Msa0651510:intron | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | - | chr4_3:58953753-58953772 | Msa0651510:intron | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | - | chr4_3:58953754-58953773 | Msa0651510:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_3:58953915-58953934 | None:intergenic | 50.0% | |
| ACCTTCGAAGTTTGGCAGTG+AGG | - | chr4_3:58954273-58954292 | Msa0651510:CDS | 50.0% | |
| ACCTCACTGCCAAACTTCGA+AGG | + | chr4_3:58954277-58954296 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_3:58954855-58954874 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | - | chr4_3:58955268-58955287 | Msa0651510:CDS | 50.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | - | chr4_3:58953757-58953776 | Msa0651510:intron | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | - | chr4_3:58953758-58953777 | Msa0651510:intron | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | - | chr4_3:58953759-58953778 | Msa0651510:intron | 55.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | - | chr4_3:58953757-58953776 | Msa0651510:intron | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | - | chr4_3:58953758-58953777 | Msa0651510:intron | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | - | chr4_3:58953759-58953778 | Msa0651510:intron | 55.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | - | chr4_3:58953737-58953756 | Msa0651510:intron | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4_3:58954153-58954172 | None:intergenic | 60.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | - | chr4_3:58953737-58953756 | Msa0651510:intron | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4_3:58954153-58954172 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 58953586 | 58955315 | 58953586 | ID=Msa0651510;Name=Msa0651510 |
| chr4_3 | mRNA | 58953586 | 58955315 | 58953586 | ID=Msa0651510-mRNA-1;Parent=Msa0651510;Name=Msa0651510-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|305 |
| chr4_3 | exon | 58954956 | 58955315 | 58954956 | ID=Msa0651510-mRNA-1:exon:15690;Parent=Msa0651510-mRNA-1 |
| chr4_3 | exon | 58953939 | 58954412 | 58953939 | ID=Msa0651510-mRNA-1:exon:15689;Parent=Msa0651510-mRNA-1 |
| chr4_3 | exon | 58953586 | 58953669 | 58953586 | ID=Msa0651510-mRNA-1:exon:15688;Parent=Msa0651510-mRNA-1 |
| chr4_3 | CDS | 58954956 | 58955315 | 58954956 | ID=Msa0651510-mRNA-1:cds;Parent=Msa0651510-mRNA-1 |
| chr4_3 | CDS | 58953939 | 58954412 | 58953939 | ID=Msa0651510-mRNA-1:cds;Parent=Msa0651510-mRNA-1 |
| chr4_3 | CDS | 58953586 | 58953669 | 58953586 | ID=Msa0651510-mRNA-1:cds;Parent=Msa0651510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
