Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611170 | XP_003607934.1 | 94.098 | 305 | 17 | 1 | 1 | 305 | 1 | 304 | 0.0 | 545 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611170 | sp|Q9FXA3|BH095_ARATH | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.43e-42 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0611170 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611170 | Msa0611250 | 0.848590 | 5.564033e-60 | -8.615850e-47 |
| Msa0611170 | Msa0651510 | 0.841783 | 3.853626e-58 | -8.615850e-47 |
| Msa0611170 | Msa0694010 | 0.863644 | 2.148333e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611170 | MtrunA17_Chr4g0044621 | 89.869 | 306 | 29 | 2 | 1 | 305 | 1 | 305 | 0.0 | 509 |
| Msa0611170 | MtrunA17_Chr4g0044611 | 93.548 | 279 | 17 | 1 | 1 | 279 | 1 | 278 | 1.72e-177 | 492 |
| Msa0611170 | MtrunA17_Chr4g0042511 | 43.214 | 280 | 121 | 7 | 1 | 279 | 1 | 243 | 4.18e-50 | 167 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0611170 | AT1G49770.1 | 33.333 | 324 | 160 | 8 | 12 | 305 | 9 | 306 | 8.57e-43 | 149 |
Find 63 sgRNAs with CRISPR-Local
Find 210 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCGTTGATTCCTTCTTTC+TGG | 0.071265 | 4_2:+59296470 | None:intergenic |
| TCACCTAAATTATCAGAATT+TGG | 0.105182 | 4_2:+59296529 | None:intergenic |
| TGAAAATTTCTACATGATTA+TGG | 0.218947 | 4_2:-59295256 | Msa0611170:CDS |
| GCTTCCTGAACTTCCTTCTA+AGG | 0.231106 | 4_2:-59296266 | Msa0611170:intron |
| CTCCCAAATTCTGATAATTT+AGG | 0.240479 | 4_2:-59296532 | Msa0611170:CDS |
| GAAAATGAATTTACCTTAGA+AGG | 0.295761 | 4_2:+59296253 | None:intergenic |
| GAATGCTTCCCTTGATTCAT+AGG | 0.298456 | 4_2:+59295551 | None:intergenic |
| ATTCCTTCTTTCTGGTTCAA+TGG | 0.303231 | 4_2:+59296478 | None:intergenic |
| CACCTAAATTATCAGAATTT+GGG | 0.327226 | 4_2:+59296530 | None:intergenic |
| CTCAAATGTGTATCCCCATT+TGG | 0.335851 | 4_2:-59295609 | Msa0611170:CDS |
| AAACCTACTTGTTGCATTTG+AGG | 0.351914 | 4_2:+59295441 | None:intergenic |
| GTGTTCAGACAGGTTTCATT+TGG | 0.354346 | 4_2:-59296576 | Msa0611170:CDS |
| TTTACCTTAGAAGGAAGTTC+AGG | 0.386490 | 4_2:+59296262 | None:intergenic |
| TCTCTTGACCACAATTGCTT+TGG | 0.410651 | 4_2:-59295334 | Msa0611170:CDS |
| TCAAATGTGTATCCCCATTT+GGG | 0.412830 | 4_2:-59295608 | Msa0611170:CDS |
| CGGTTTCTCTTCTTCCTCAC+CGG | 0.413966 | 4_2:+59296439 | None:intergenic |
| ATTGAAAATGCATTATTTGA+AGG | 0.414433 | 4_2:+59295465 | None:intergenic |
| TGTTCAGACAGGTTTCATTT+GGG | 0.442568 | 4_2:-59296575 | Msa0611170:CDS |
| CGGTGAGGAAGAAGAGAAAC+CGG | 0.442669 | 4_2:-59296438 | Msa0611170:CDS |
| CAGATGACTCACTCCCAAAT+GGG | 0.455516 | 4_2:+59295595 | None:intergenic |
| GAGAAAGGAGAAAGAAAATG+AGG | 0.462906 | 4_2:-59296315 | Msa0611170:CDS |
| ACAGATGACTCACTCCCAAA+TGG | 0.463724 | 4_2:+59295594 | None:intergenic |
| TTGAAAAGAAGAAGCAAGAA+AGG | 0.480003 | 4_2:-59295632 | Msa0611170:CDS |
| GAAACATACAAGCATGCGGC+TGG | 0.489565 | 4_2:-59294923 | Msa0611170:CDS |
| CATGATCAAGGTGTTCAGAC+AGG | 0.491804 | 4_2:-59296586 | Msa0611170:CDS |
| CTCCAACACCAAAGCAATTG+TGG | 0.500537 | 4_2:+59295326 | None:intergenic |
| CATTTGGGAAAATCATCCAT+GGG | 0.506047 | 4_2:-59296560 | Msa0611170:CDS |
| TCATTTGGGAAAATCATCCA+TGG | 0.517340 | 4_2:-59296561 | Msa0611170:CDS |
| AATGCTTCCCTTGATTCATA+GGG | 0.521692 | 4_2:+59295552 | None:intergenic |
| GACCACAATTGCTTTGGTGT+TGG | 0.522135 | 4_2:-59295328 | Msa0611170:CDS |
| GAAGAAGAGAAACCGGGGTG+GGG | 0.528579 | 4_2:-59296431 | Msa0611170:CDS |
| AGTGGCATCCCTATGAATCA+AGG | 0.535671 | 4_2:-59295560 | Msa0611170:CDS |
| ATTTGTGCAACTAAGAAGCC+TGG | 0.543272 | 4_2:-59295357 | Msa0611170:CDS |
| CTTCATTGCTGCATCTACAA+TGG | 0.548628 | 4_2:+59295689 | None:intergenic |
| GAAGCATTCTTAGCTGATCA+AGG | 0.551542 | 4_2:-59295537 | Msa0611170:CDS |
| GTTCAGGAAGCAAGGCATGA+AGG | 0.554482 | 4_2:+59296278 | None:intergenic |
| AGAAGGAAGTTCAGGAAGCA+AGG | 0.555351 | 4_2:+59296270 | None:intergenic |
| ACATATTGACTGAAAGAGAA+AGG | 0.558067 | 4_2:-59296330 | Msa0611170:CDS |
| ATTTGCATTGCACATGATGT+TGG | 0.560264 | 4_2:+59295278 | None:intergenic |
| GGAAGAAGAGAAACCGGGGT+GGG | 0.561203 | 4_2:-59296432 | Msa0611170:CDS |
| AATCAACGAAGGAGATGCTC+CGG | 0.562362 | 4_2:-59296458 | Msa0611170:CDS |
| ACGTGACGCAAATTCAATGA+AGG | 0.564753 | 4_2:-59294945 | Msa0611170:CDS |
| AAACCATTGAACCAGAAAGA+AGG | 0.568529 | 4_2:-59296481 | Msa0611170:CDS |
| GCAATTGTGGTCAAGAGACC+AGG | 0.573021 | 4_2:+59295339 | None:intergenic |
| ATACCTCAAATGCAACAAGT+AGG | 0.573192 | 4_2:-59295444 | Msa0611170:CDS |
| GGTGAGGAAGAAGAGAAACC+GGG | 0.579068 | 4_2:-59296437 | Msa0611170:CDS |
| CAAGTTATTATTATAACTTG+AGG | 0.582073 | 4_2:+59295512 | None:intergenic |
| ATGAGTGTAGATCATGATCA+AGG | 0.591815 | 4_2:-59296598 | Msa0611170:CDS |
| TTGATCATGATCTACACTCA+TGG | 0.598595 | 4_2:+59296600 | None:intergenic |
| GTGGCATCCCTATGAATCAA+GGG | 0.614055 | 4_2:-59295559 | Msa0611170:CDS |
| AATGTTGTACTAAACATATG+TGG | 0.641101 | 4_2:-59295399 | Msa0611170:CDS |
| TTCTAATTACAACCCCACCC+CGG | 0.641970 | 4_2:+59296419 | None:intergenic |
| CAGAAAGAAGGAATCAACGA+AGG | 0.651154 | 4_2:-59296469 | Msa0611170:CDS |
| AGATGACTCACTCCCAAATG+GGG | 0.669367 | 4_2:+59295596 | None:intergenic |
| AGGAAGAAGAGAAACCGGGG+TGG | 0.676084 | 4_2:-59296433 | Msa0611170:CDS |
| GAAGGAAACATACAAGCATG+CGG | 0.683731 | 4_2:-59294927 | Msa0611170:CDS |
| CGGCTGGAGAAATTATGATG+TGG | 0.687301 | 4_2:-59294907 | Msa0611170:CDS |
| ACGAAGGAGATGCTCCGGTG+AGG | 0.689033 | 4_2:-59296453 | Msa0611170:CDS |
| ATTTGGGAAAATCATCCATG+GGG | 0.693011 | 4_2:-59296559 | Msa0611170:CDS |
| GAATTTGGGAGATCACCCCA+TGG | 0.708355 | 4_2:+59296544 | None:intergenic |
| GTGAGGAAGAAGAGAAACCG+GGG | 0.718521 | 4_2:-59296436 | Msa0611170:CDS |
| GTTGTACTAAACATATGTGG+TGG | 0.748360 | 4_2:-59295396 | Msa0611170:CDS |
| CATCTGTGATCAACTCACAG+TGG | 0.777919 | 4_2:-59295578 | Msa0611170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4_2:59295778-59295797 | Msa0611170:intron | 10.0% |
| !!! | ATTTGATTTTTATATTTTAC+AGG | - | chr4_2:59295778-59295797 | Msa0611170:intron | 10.0% |
| !! | AATATAACAAAATGATAAAG+AGG | + | chr4_2:59296297-59296316 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4_2:59296359-59296378 | Msa0611170:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4_2:59296452-59296471 | None:intergenic | 15.0% |
| !! | AATATAACAAAATGATAAAG+AGG | + | chr4_2:59296297-59296316 | None:intergenic | 15.0% |
| !! | CTTTCAAAATTAATAGTATT+TGG | - | chr4_2:59296359-59296378 | Msa0611170:CDS | 15.0% |
| !!! | TTTTTGAATTTTCTTTCTTT+TGG | + | chr4_2:59296452-59296471 | None:intergenic | 15.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4_2:59295353-59295372 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4_2:59295354-59295373 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | + | chr4_2:59295537-59295556 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4_2:59295841-59295860 | Msa0611170:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4_2:59295993-59296012 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | + | chr4_2:59296040-59296059 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4_2:59296246-59296265 | Msa0611170:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4_2:59296390-59296409 | None:intergenic | 20.0% |
| !! | ATGATTTAGATAAACTTCAA+GGG | + | chr4_2:59295353-59295372 | None:intergenic | 20.0% |
| !! | TATGATTTAGATAAACTTCA+AGG | + | chr4_2:59295354-59295373 | None:intergenic | 20.0% |
| !! | ATTAATTAGTTCAACAATCA+AGG | + | chr4_2:59295537-59295556 | None:intergenic | 20.0% |
| !! | TAAAAATCTGCAAGAAATTA+AGG | - | chr4_2:59295841-59295860 | Msa0611170:intron | 20.0% |
| !! | CAAGTTATTATTATAACTTG+AGG | + | chr4_2:59295993-59296012 | None:intergenic | 20.0% |
| !! | ATTGAAAATGCATTATTTGA+AGG | + | chr4_2:59296040-59296059 | None:intergenic | 20.0% |
| !! | TGAAAATTTCTACATGATTA+TGG | - | chr4_2:59296246-59296265 | Msa0611170:intron | 20.0% |
| !!! | TGTTATAACATATTTGTTGT+AGG | + | chr4_2:59296390-59296409 | None:intergenic | 20.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | + | chr4_2:59294975-59294994 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | + | chr4_2:59294976-59294995 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4_2:59295252-59295271 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4_2:59295712-59295731 | Msa0611170:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4_2:59296103-59296122 | Msa0611170:intron | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4_2:59296385-59296404 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4_2:59296521-59296540 | Msa0611170:CDS | 25.0% |
| ! | CACCTAAATTATCAGAATTT+GGG | + | chr4_2:59294975-59294994 | None:intergenic | 25.0% |
| ! | TCACCTAAATTATCAGAATT+TGG | + | chr4_2:59294976-59294995 | None:intergenic | 25.0% |
| ! | GAAAATGAATTTACCTTAGA+AGG | + | chr4_2:59295252-59295271 | None:intergenic | 25.0% |
| !!! | TTTTTGTATTTTTGCACTTG+AGG | - | chr4_2:59295712-59295731 | Msa0611170:intron | 25.0% |
| ! | AATGTTGTACTAAACATATG+TGG | - | chr4_2:59296103-59296122 | Msa0611170:intron | 25.0% |
| !!! | TAACATATTTGTTGTAGGAT+AGG | + | chr4_2:59296385-59296404 | None:intergenic | 25.0% |
| !! | TTGAATTGTGTTAATTTTGC+AGG | - | chr4_2:59296521-59296540 | Msa0611170:CDS | 25.0% |
| CTCCCAAATTCTGATAATTT+AGG | - | chr4_2:59294970-59294989 | Msa0611170:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_2:59295172-59295191 | Msa0611170:intron | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4_2:59295483-59295502 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4_2:59295757-59295776 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4_2:59295870-59295889 | Msa0611170:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4_2:59296071-59296090 | Msa0611170:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_2:59296272-59296291 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_2:59296289-59296308 | None:intergenic | 30.0% | |
| CTCCCAAATTCTGATAATTT+AGG | - | chr4_2:59294970-59294989 | Msa0611170:intron | 30.0% | |
| ! | ACATATTGACTGAAAGAGAA+AGG | - | chr4_2:59295172-59295191 | Msa0611170:intron | 30.0% |
| TCCAAGTTTGACATTGTATT+CGG | + | chr4_2:59295483-59295502 | None:intergenic | 30.0% | |
| !! | AAACATCTTCATTAGTCTTG+AGG | + | chr4_2:59295757-59295776 | None:intergenic | 30.0% |
| TTGAAAAGAAGAAGCAAGAA+AGG | - | chr4_2:59295870-59295889 | Msa0611170:intron | 30.0% | |
| ! | AACAAGTAGGTTTTCAAACA+TGG | - | chr4_2:59296071-59296090 | Msa0611170:intron | 30.0% |
| ! | AGAAGGTTTGAAACTTACAT+GGG | + | chr4_2:59296272-59296291 | None:intergenic | 30.0% |
| AAAATGATAAAGAGGAGAGA+AGG | + | chr4_2:59296289-59296308 | None:intergenic | 30.0% | |
| TTGATCATGATCTACACTCA+TGG | + | chr4_2:59294905-59294924 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4_2:59294904-59294923 | Msa0611170:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4_2:59294927-59294946 | Msa0611170:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_2:59294941-59294960 | Msa0611170:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_2:59294942-59294961 | Msa0611170:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4_2:59294943-59294962 | Msa0611170:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_2:59295021-59295040 | Msa0611170:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_2:59295027-59295046 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_2:59295187-59295206 | Msa0611170:intron | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | + | chr4_2:59295243-59295262 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | + | chr4_2:59295430-59295449 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4_2:59295449-59295468 | Msa0611170:CDS | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4_2:59295450-59295469 | Msa0611170:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4_2:59295482-59295501 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4_2:59295576-59295595 | Msa0611170:CDS | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | + | chr4_2:59295639-59295658 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | + | chr4_2:59295662-59295681 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4_2:59295663-59295682 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4_2:59295894-59295913 | Msa0611170:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_2:59295953-59295972 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4_2:59296058-59296077 | Msa0611170:intron | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4_2:59296064-59296083 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | - | chr4_2:59296106-59296125 | Msa0611170:intron | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4_2:59296227-59296246 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_2:59296273-59296292 | None:intergenic | 35.0% |
| TTGATCATGATCTACACTCA+TGG | + | chr4_2:59294905-59294924 | None:intergenic | 35.0% | |
| ATGAGTGTAGATCATGATCA+AGG | - | chr4_2:59294904-59294923 | Msa0611170:CDS | 35.0% | |
| TGTTCAGACAGGTTTCATTT+GGG | - | chr4_2:59294927-59294946 | Msa0611170:CDS | 35.0% | |
| TCATTTGGGAAAATCATCCA+TGG | - | chr4_2:59294941-59294960 | Msa0611170:CDS | 35.0% | |
| CATTTGGGAAAATCATCCAT+GGG | - | chr4_2:59294942-59294961 | Msa0611170:CDS | 35.0% | |
| ATTTGGGAAAATCATCCATG+GGG | - | chr4_2:59294943-59294962 | Msa0611170:CDS | 35.0% | |
| AAACCATTGAACCAGAAAGA+AGG | - | chr4_2:59295021-59295040 | Msa0611170:intron | 35.0% | |
| !! | ATTCCTTCTTTCTGGTTCAA+TGG | + | chr4_2:59295027-59295046 | None:intergenic | 35.0% |
| GAGAAAGGAGAAAGAAAATG+AGG | - | chr4_2:59295187-59295206 | Msa0611170:intron | 35.0% | |
| TTTACCTTAGAAGGAAGTTC+AGG | + | chr4_2:59295243-59295262 | None:intergenic | 35.0% | |
| ATCGAAGTTCAAGAACCATA+GGG | + | chr4_2:59295430-59295449 | None:intergenic | 35.0% | |
| TCCTTCTTGTTACCATAGTT+AGG | - | chr4_2:59295449-59295468 | Msa0611170:CDS | 35.0% | |
| CCTTCTTGTTACCATAGTTA+GGG | - | chr4_2:59295450-59295469 | Msa0611170:CDS | 35.0% | |
| CCAAGTTTGACATTGTATTC+GGG | + | chr4_2:59295482-59295501 | None:intergenic | 35.0% | |
| TTGTGTTAACCTTCGAAGTT+TGG | - | chr4_2:59295576-59295595 | Msa0611170:CDS | 35.0% | |
| ! | AGAACTCGATTTTCATTCCT+GGG | + | chr4_2:59295639-59295658 | None:intergenic | 35.0% |
| CCACAAATGACGAATTGTTT+GGG | + | chr4_2:59295662-59295681 | None:intergenic | 35.0% | |
| TCCACAAATGACGAATTGTT+TGG | + | chr4_2:59295663-59295682 | None:intergenic | 35.0% | |
| TCAAATGTGTATCCCCATTT+GGG | - | chr4_2:59295894-59295913 | Msa0611170:intron | 35.0% | |
| AATGCTTCCCTTGATTCATA+GGG | + | chr4_2:59295953-59295972 | None:intergenic | 35.0% | |
| ATACCTCAAATGCAACAAGT+AGG | - | chr4_2:59296058-59296077 | Msa0611170:intron | 35.0% | |
| ! | AAACCTACTTGTTGCATTTG+AGG | + | chr4_2:59296064-59296083 | None:intergenic | 35.0% |
| GTTGTACTAAACATATGTGG+TGG | - | chr4_2:59296106-59296125 | Msa0611170:intron | 35.0% | |
| ATTTGCATTGCACATGATGT+TGG | + | chr4_2:59296227-59296246 | None:intergenic | 35.0% | |
| ! | GAGAAGGTTTGAAACTTACA+TGG | + | chr4_2:59296273-59296292 | None:intergenic | 35.0% |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4_2:59294926-59294945 | Msa0611170:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4_2:59295035-59295054 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4_2:59295033-59295052 | Msa0611170:intron | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | + | chr4_2:59295429-59295448 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | + | chr4_2:59295431-59295450 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4_2:59295453-59295472 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4_2:59295479-59295498 | Msa0611170:CDS | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | - | chr4_2:59295579-59295598 | Msa0611170:CDS | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | + | chr4_2:59295624-59295643 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | + | chr4_2:59295640-59295659 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4_2:59295659-59295678 | Msa0611170:CDS | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4_2:59295816-59295835 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4_2:59295893-59295912 | Msa0611170:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_2:59295954-59295973 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_2:59295965-59295984 | Msa0611170:intron | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_2:59296145-59296164 | Msa0611170:intron | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_2:59296168-59296187 | Msa0611170:intron | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4_2:59296557-59296576 | Msa0611170:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4_2:59296575-59296594 | Msa0611170:CDS | 40.0% | |
| GTGTTCAGACAGGTTTCATT+TGG | - | chr4_2:59294926-59294945 | Msa0611170:CDS | 40.0% | |
| !! | CTTCGTTGATTCCTTCTTTC+TGG | + | chr4_2:59295035-59295054 | None:intergenic | 40.0% |
| CAGAAAGAAGGAATCAACGA+AGG | - | chr4_2:59295033-59295052 | Msa0611170:intron | 40.0% | |
| TCGAAGTTCAAGAACCATAG+GGG | + | chr4_2:59295429-59295448 | None:intergenic | 40.0% | |
| GATCGAAGTTCAAGAACCAT+AGG | + | chr4_2:59295431-59295450 | None:intergenic | 40.0% | |
| CCCTAACTATGGTAACAAGA+AGG | + | chr4_2:59295453-59295472 | None:intergenic | 40.0% | |
| CCCGAATACAATGTCAAACT+TGG | - | chr4_2:59295479-59295498 | Msa0611170:CDS | 40.0% | |
| TGTTAACCTTCGAAGTTTGG+CGG | - | chr4_2:59295579-59295598 | Msa0611170:CDS | 40.0% | |
| ! | TTCCTGGGTGGAACAATTTT+TGG | + | chr4_2:59295624-59295643 | None:intergenic | 40.0% |
| ! | GAGAACTCGATTTTCATTCC+TGG | + | chr4_2:59295640-59295659 | None:intergenic | 40.0% |
| CCCAAACAATTCGTCATTTG+TGG | - | chr4_2:59295659-59295678 | Msa0611170:CDS | 40.0% | |
| CTTCATTGCTGCATCTACAA+TGG | + | chr4_2:59295816-59295835 | None:intergenic | 40.0% | |
| CTCAAATGTGTATCCCCATT+TGG | - | chr4_2:59295893-59295912 | Msa0611170:intron | 40.0% | |
| GAATGCTTCCCTTGATTCAT+AGG | + | chr4_2:59295954-59295973 | None:intergenic | 40.0% | |
| ! | GAAGCATTCTTAGCTGATCA+AGG | - | chr4_2:59295965-59295984 | Msa0611170:intron | 40.0% |
| ATTTGTGCAACTAAGAAGCC+TGG | - | chr4_2:59296145-59296164 | Msa0611170:intron | 40.0% | |
| TCTCTTGACCACAATTGCTT+TGG | - | chr4_2:59296168-59296187 | Msa0611170:intron | 40.0% | |
| ACGTGACGCAAATTCAATGA+AGG | - | chr4_2:59296557-59296576 | Msa0611170:CDS | 40.0% | |
| GAAGGAAACATACAAGCATG+CGG | - | chr4_2:59296575-59296594 | Msa0611170:CDS | 40.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4_2:59294916-59294935 | Msa0611170:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | - | chr4_2:59295044-59295063 | Msa0611170:intron | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | + | chr4_2:59295086-59295105 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_2:59295235-59295254 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_2:59295236-59295255 | Msa0611170:intron | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | - | chr4_2:59295412-59295431 | Msa0611170:CDS | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4_2:59295456-59295475 | Msa0611170:CDS | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4_2:59295477-59295496 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | - | chr4_2:59295619-59295638 | Msa0611170:CDS | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | + | chr4_2:59295636-59295655 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | + | chr4_2:59295909-59295928 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4_2:59295910-59295929 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4_2:59295911-59295930 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_2:59295924-59295943 | Msa0611170:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_2:59295942-59295961 | Msa0611170:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_2:59295943-59295962 | Msa0611170:intron | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4_2:59296174-59296193 | Msa0611170:intron | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4_2:59296179-59296198 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4_2:59296595-59296614 | Msa0611170:CDS | 45.0% | |
| ! | CATGATCAAGGTGTTCAGAC+AGG | - | chr4_2:59294916-59294935 | Msa0611170:CDS | 45.0% |
| AATCAACGAAGGAGATGCTC+CGG | - | chr4_2:59295044-59295063 | Msa0611170:intron | 45.0% | |
| TTCTAATTACAACCCCACCC+CGG | + | chr4_2:59295086-59295105 | None:intergenic | 45.0% | |
| AGAAGGAAGTTCAGGAAGCA+AGG | + | chr4_2:59295235-59295254 | None:intergenic | 45.0% | |
| GCTTCCTGAACTTCCTTCTA+AGG | - | chr4_2:59295236-59295255 | Msa0611170:intron | 45.0% | |
| TTCATGCACTAGATCCCCTA+TGG | - | chr4_2:59295412-59295431 | Msa0611170:CDS | 45.0% | |
| TGTTACCATAGTTAGGGACC+AGG | - | chr4_2:59295456-59295475 | Msa0611170:CDS | 45.0% | |
| TTTGACATTGTATTCGGGCC+TGG | + | chr4_2:59295477-59295496 | None:intergenic | 45.0% | |
| AGCCAAAAATTGTTCCACCC+AGG | - | chr4_2:59295619-59295638 | Msa0611170:CDS | 45.0% | |
| ! | ACTCGATTTTCATTCCTGGG+TGG | + | chr4_2:59295636-59295655 | None:intergenic | 45.0% |
| AGATGACTCACTCCCAAATG+GGG | + | chr4_2:59295909-59295928 | None:intergenic | 45.0% | |
| CAGATGACTCACTCCCAAAT+GGG | + | chr4_2:59295910-59295929 | None:intergenic | 45.0% | |
| ACAGATGACTCACTCCCAAA+TGG | + | chr4_2:59295911-59295930 | None:intergenic | 45.0% | |
| CATCTGTGATCAACTCACAG+TGG | - | chr4_2:59295924-59295943 | Msa0611170:intron | 45.0% | |
| AGTGGCATCCCTATGAATCA+AGG | - | chr4_2:59295942-59295961 | Msa0611170:intron | 45.0% | |
| GTGGCATCCCTATGAATCAA+GGG | - | chr4_2:59295943-59295962 | Msa0611170:intron | 45.0% | |
| ! | GACCACAATTGCTTTGGTGT+TGG | - | chr4_2:59296174-59296193 | Msa0611170:intron | 45.0% |
| CTCCAACACCAAAGCAATTG+TGG | + | chr4_2:59296179-59296198 | None:intergenic | 45.0% | |
| CGGCTGGAGAAATTATGATG+TGG | - | chr4_2:59296595-59296614 | Msa0611170:CDS | 45.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4_2:59294961-59294980 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | + | chr4_2:59295066-59295085 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | - | chr4_2:59295064-59295083 | Msa0611170:intron | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | - | chr4_2:59295065-59295084 | Msa0611170:intron | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | - | chr4_2:59295066-59295085 | Msa0611170:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_2:59295227-59295246 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_2:59296166-59296185 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | - | chr4_2:59296579-59296598 | Msa0611170:CDS | 50.0% | |
| GAATTTGGGAGATCACCCCA+TGG | + | chr4_2:59294961-59294980 | None:intergenic | 50.0% | |
| CGGTTTCTCTTCTTCCTCAC+CGG | + | chr4_2:59295066-59295085 | None:intergenic | 50.0% | |
| CGGTGAGGAAGAAGAGAAAC+CGG | - | chr4_2:59295064-59295083 | Msa0611170:intron | 50.0% | |
| GGTGAGGAAGAAGAGAAACC+GGG | - | chr4_2:59295065-59295084 | Msa0611170:intron | 50.0% | |
| GTGAGGAAGAAGAGAAACCG+GGG | - | chr4_2:59295066-59295085 | Msa0611170:intron | 50.0% | |
| GTTCAGGAAGCAAGGCATGA+AGG | + | chr4_2:59295227-59295246 | None:intergenic | 50.0% | |
| GCAATTGTGGTCAAGAGACC+AGG | + | chr4_2:59296166-59296185 | None:intergenic | 50.0% | |
| GAAACATACAAGCATGCGGC+TGG | - | chr4_2:59296579-59296598 | Msa0611170:CDS | 50.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | - | chr4_2:59295069-59295088 | Msa0611170:intron | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | - | chr4_2:59295070-59295089 | Msa0611170:intron | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | - | chr4_2:59295071-59295090 | Msa0611170:intron | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | - | chr4_2:59295584-59295603 | Msa0611170:CDS | 55.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | + | chr4_2:59295588-59295607 | None:intergenic | 55.0% | |
| AGGAAGAAGAGAAACCGGGG+TGG | - | chr4_2:59295069-59295088 | Msa0611170:intron | 55.0% | |
| GGAAGAAGAGAAACCGGGGT+GGG | - | chr4_2:59295070-59295089 | Msa0611170:intron | 55.0% | |
| GAAGAAGAGAAACCGGGGTG+GGG | - | chr4_2:59295071-59295090 | Msa0611170:intron | 55.0% | |
| ACCTTCGAAGTTTGGCGGTG+AGG | - | chr4_2:59295584-59295603 | Msa0611170:CDS | 55.0% | |
| ACCTCACCGCCAAACTTCGA+AGG | + | chr4_2:59295588-59295607 | None:intergenic | 55.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | - | chr4_2:59295049-59295068 | Msa0611170:intron | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4_2:59295464-59295483 | None:intergenic | 60.0% | |
| ACGAAGGAGATGCTCCGGTG+AGG | - | chr4_2:59295049-59295068 | Msa0611170:intron | 60.0% | |
| TCGGGCCTGGTCCCTAACTA+TGG | + | chr4_2:59295464-59295483 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 59294898 | 59296626 | 59294898 | ID=Msa0611170;Name=Msa0611170 |
| chr4_2 | mRNA | 59294898 | 59296626 | 59294898 | ID=Msa0611170-mRNA-1;Parent=Msa0611170;Name=Msa0611170-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|305 |
| chr4_2 | exon | 59296267 | 59296626 | 59296267 | ID=Msa0611170-mRNA-1:exon:15732;Parent=Msa0611170-mRNA-1 |
| chr4_2 | exon | 59295251 | 59295724 | 59295251 | ID=Msa0611170-mRNA-1:exon:15731;Parent=Msa0611170-mRNA-1 |
| chr4_2 | exon | 59294898 | 59294981 | 59294898 | ID=Msa0611170-mRNA-1:exon:15730;Parent=Msa0611170-mRNA-1 |
| chr4_2 | CDS | 59296267 | 59296626 | 59296267 | ID=Msa0611170-mRNA-1:cds;Parent=Msa0611170-mRNA-1 |
| chr4_2 | CDS | 59295251 | 59295724 | 59295251 | ID=Msa0611170-mRNA-1:cds;Parent=Msa0611170-mRNA-1 |
| chr4_2 | CDS | 59294898 | 59294981 | 59294898 | ID=Msa0611170-mRNA-1:cds;Parent=Msa0611170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
