AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0651760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651760 MtrunA17_Chr4g0044921 97.143 630 12 3 1 627 1 627 0.0 1266
Msa0651760 MtrunA17_Chr3g0133911 65.169 623 173 9 29 625 33 637 0.0 822
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0651760 AT3G19240.1 69.394 660 154 9 1 625 1 647 0.0 887
Msa0651760 AT4G33400.1 61.774 654 212 9 1 625 1 645 0.0 801

Find 193 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTGCTGTTTCCTTAATT+TGG 0.104196 4_3:+59263991 None:intergenic
TCTCAATGATGCTGGCTTTC+AGG 0.112027 4_3:-59266547 Msa0651760:CDS
GAAACCTTCAAATGGAAATT+AGG 0.174368 4_3:+59264191 None:intergenic
ATTTCGTCTCCAACGGTGTC+TGG 0.228016 4_3:-59266881 Msa0651760:CDS
GCAACACTCCCAACGCTAAA+TGG 0.243481 4_3:-59267070 Msa0651760:CDS
TACAAGTTTGGGTTTGGTTT+TGG 0.251860 4_3:-59264055 Msa0651760:three_prime_UTR
GAGAATAAGGTTAAGGTTTA+CGG 0.259733 4_3:-59266762 Msa0651760:CDS
ATTGATTGATTATAGTATAT+TGG 0.263442 4_3:+59267434 None:intergenic
GAAATTCAGTGACGAATTTC+CGG 0.280068 4_3:+59266829 None:intergenic
CTTTCCTAATTTCCATTTGA+AGG 0.287678 4_3:-59264195 Msa0651760:three_prime_UTR
TTGAAAATTGAAATTTGAAT+TGG 0.295141 4_3:+59267406 None:intergenic
TGCACGTTTGAGAATGTTTA+CGG 0.298124 4_3:-59266801 Msa0651760:CDS
CACTCCTCTGGATTCACATT+TGG 0.308842 4_3:-59265809 Msa0651760:CDS
TTTGGTTATTACACAAGTTT+GGG 0.311964 4_3:-59264037 Msa0651760:three_prime_UTR
TTGATTGATTATAGTATATT+GGG 0.312159 4_3:+59267435 None:intergenic
GAATTCCCCGGTCAAAATTC+CGG 0.312404 4_3:+59266520 None:intergenic
TAGTATATTGGGATTTGAAA+TGG 0.322398 4_3:+59267446 None:intergenic
TGATTTCGATTTCAATTTCA+TGG 0.324882 4_3:-59267360 Msa0651760:exon
GCTACCACCAACGGAGCTTC+AGG 0.325629 4_3:+59264287 None:intergenic
TCTGTATAATTTCCAAATTA+AGG 0.327646 4_3:-59264003 Msa0651760:three_prime_UTR
ATGGCCACCATGAAACTTAT+TGG 0.332207 4_3:+59265777 None:intergenic
CCAGCAGGAGACGCCGAATA+AGG 0.335192 4_3:-59266463 Msa0651760:CDS
TATCAAGAGCACCTAGGGTT+AGG 0.337247 4_3:+59266580 None:intergenic
ATGCTGGCTTTCAGGTTTAC+CGG 0.345587 4_3:-59266539 Msa0651760:CDS
ATAAGGCTCCGGACTCTTCC+CGG 0.347959 4_3:+59266662 None:intergenic
ACGGAATCATCCGCGGCTTC+CGG 0.354674 4_3:+59266714 None:intergenic
GAACTTCAATTAAAGATGTT+TGG 0.356166 4_3:-59266921 Msa0651760:CDS
ATCACCGACGGAAGAGAATA+AGG 0.356376 4_3:-59266775 Msa0651760:CDS
GGAAGAGTCCGGAGCCTTAT+CGG 0.358877 4_3:-59266659 Msa0651760:CDS
GGGAAGACAAAGACTGGTTT+TGG 0.360962 4_3:-59265877 Msa0651760:CDS
TGTGATTACAAGTTTGGGTT+TGG 0.366611 4_3:-59264061 Msa0651760:three_prime_UTR
AACCAGCTTGATATAGAAAC+AGG 0.367263 4_3:-59266363 Msa0651760:CDS
CTCATCAACAAAGCCTTATT+CGG 0.367438 4_3:+59266450 None:intergenic
GGGTACAACTGATACTTATC+TGG 0.375117 4_3:-59265932 Msa0651760:CDS
ACAGTGCTCACGAATGTTAC+AGG 0.375660 4_3:-59264415 Msa0651760:CDS
CTGATAGAGCTAACTTTCAT+AGG 0.376837 4_3:+59264260 None:intergenic
ATTGGGATTTGAAATGGAAA+TGG 0.377326 4_3:+59267452 None:intergenic
TGAAAATTGAAATTTGAATT+GGG 0.382648 4_3:+59267407 None:intergenic
TGGGCAAGTTCAGTGTGATA+TGG 0.385495 4_3:-59264457 Msa0651760:CDS
AATATAAACGGAGGTTTAAC+GGG 0.388303 4_3:+59264220 None:intergenic
TTGGTGGTCGTATGGGAAAC+AGG 0.400307 4_3:-59265858 Msa0651760:CDS
ATTGTTGAAGCTCACTCCTC+TGG 0.400548 4_3:-59265821 Msa0651760:CDS
AGCATAGCAGAGAGCGTGTC+AGG 0.405015 4_3:-59267522 Msa0651760:five_prime_UTR
ATTGTTGTGGGGTCTCTTGA+TGG 0.405443 4_3:-59266066 Msa0651760:CDS
GAGTGGAAGTTTGAGAAAGA+TGG 0.406716 4_3:-59266327 Msa0651760:CDS
GGCGTAGGAGGTTCGTTTGT+CGG 0.407065 4_3:+59267040 None:intergenic
GTTAGCTCTATCAGTATGTC+TGG 0.407557 4_3:-59264251 Msa0651760:CDS
CTCTTGAAAATTGATGCCCT+TGG 0.407659 4_3:+59266130 None:intergenic
GTTTACGGTAAGGAGTTTAT+CGG 0.411185 4_3:-59266747 Msa0651760:CDS
GTCTTTCAGGTCACTGAGAA+TGG 0.411232 4_3:-59264509 Msa0651760:intron
AATGGAAATGGATCAGTTAA+CGG 0.417671 4_3:+59267464 None:intergenic
AAATATAAACGGAGGTTTAA+CGG 0.422537 4_3:+59264219 None:intergenic
CCTTATTCGGCGTCTCCTGC+TGG 0.424170 4_3:+59266463 None:intergenic
CGGAAAATTCACGGTCTTCG+CGG 0.431062 4_3:+59267324 None:intergenic
ATCAAGAGCACCTAGGGTTA+GGG 0.431483 4_3:+59266581 None:intergenic
TTTCAATGCTTTGCAACTAC+AGG 0.432711 4_3:-59266099 Msa0651760:CDS
TCGGTCTAGAGGTGATTTGA+TGG 0.434873 4_3:-59266640 Msa0651760:CDS
GTAACATCAACGCTTGTAAT+CGG 0.436282 4_3:+59265976 None:intergenic
GATTGATTACCCATGAGAAA+TGG 0.436454 4_3:+59265758 None:intergenic
AAACATCTTTAATTGAAGTT+CGG 0.437252 4_3:+59266923 None:intergenic
CGGTAAGGAGTTTATCGGTT+GGG 0.438836 4_3:-59266742 Msa0651760:CDS
TGATACTAAAGGGTCACAAT+TGG 0.441061 4_3:-59266274 Msa0651760:CDS
AGAAATTTGAAACCTTCAAA+TGG 0.441794 4_3:+59264183 None:intergenic
AAGCCGCGGATGATTCCGTT+TGG 0.443303 4_3:-59266710 Msa0651760:CDS
ATGTGGCGCTCCACTATTCA+AGG 0.446889 4_3:+59266398 None:intergenic
CGAGGTTGGTGGAATGTGAT+TGG 0.450494 4_3:+59267219 None:intergenic
GAGAGAATCCATTTAGCGTT+GGG 0.450845 4_3:+59267062 None:intergenic
GTCGTAATCTGAGTCGGAAT+CGG 0.451640 4_3:+59267304 None:intergenic
CCTCTGGATTCACATTTGGC+TGG 0.454255 4_3:-59265805 Msa0651760:CDS
AGGGTCACAATTGGATCCTT+CGG 0.457090 4_3:-59266265 Msa0651760:CDS
AGCCGCGGATGATTCCGTTT+GGG 0.459582 4_3:-59266709 Msa0651760:CDS
TTTCGTCTCCAACGGTGTCT+GGG 0.461909 4_3:-59266880 Msa0651760:CDS
GGAACTACCAATAAGTTTCA+TGG 0.465212 4_3:-59265784 Msa0651760:CDS
TTCATGGTGGCCATTTCTCA+TGG 0.466170 4_3:-59265768 Msa0651760:CDS
GGAAAATTCACGGTCTTCGC+GGG 0.466598 4_3:+59267325 None:intergenic
ATCGATGAGGATGGCGAAGA+CGG 0.468077 4_3:-59266019 Msa0651760:CDS
TGATGGCTCCGGGAAGAGTC+CGG 0.468191 4_3:-59266670 Msa0651760:CDS
GACGGAAGAGAATAAGGTTA+AGG 0.470623 4_3:-59266769 Msa0651760:CDS
GCTGTTTCCGATGATGGCTC+CGG 0.471673 4_3:-59266681 Msa0651760:CDS
ATTAGGAAAGAAAATATAAA+CGG 0.474520 4_3:+59264208 None:intergenic
CATCTTTAATTGAAGTTCGG+TGG 0.474570 4_3:+59266926 None:intergenic
ATGATAACAGGCTCTGTCAA+TGG 0.476193 4_3:-59266221 Msa0651760:CDS
TAAGGTTAAGGTTTACGGTA+AGG 0.479211 4_3:-59266757 Msa0651760:CDS
TTTGATGGAAAGTGGGTGTT+GGG 0.481016 4_3:-59265952 Msa0651760:CDS
CTGTTACAAGATAGTATTGA+AGG 0.484212 4_3:-59264366 Msa0651760:CDS
GAAGATGCTGTTTCCGATGA+TGG 0.484247 4_3:-59266687 Msa0651760:CDS
CTAGTTCGCCAGTGTTGCAT+TGG 0.488185 4_3:-59266155 Msa0651760:CDS
TCCCTGTTTCTATATCAAGC+TGG 0.490609 4_3:+59266361 None:intergenic
ACGATGTCGCTCAAGGTCAA+TGG 0.492537 4_3:-59266986 Msa0651760:CDS
CTCCCCTGAAGCTCCGTTGG+TGG 0.492757 4_3:-59264291 Msa0651760:CDS
AGGAGATGGTTCAATTGTTG+TGG 0.495642 4_3:-59266079 Msa0651760:CDS
GATATCACAAATGATACTAA+AGG 0.496137 4_3:-59266285 Msa0651760:CDS
CGACTCCCCTGAAGCTCCGT+TGG 0.497070 4_3:-59264294 Msa0651760:CDS
GATTTCGATTTCAATTTCAT+GGG 0.497330 4_3:-59267359 Msa0651760:exon
AGTGGAAGTTTGAGAAAGAT+GGG 0.500651 4_3:-59266326 Msa0651760:CDS
ATATCACAAATGATACTAAA+GGG 0.501069 4_3:-59266284 Msa0651760:CDS
GTTTATCGGTTGGGTGAAGC+CGG 0.501437 4_3:-59266733 Msa0651760:CDS
TGATAACAGGCTCTGTCAAT+GGG 0.502495 4_3:-59266220 Msa0651760:CDS
ACATTGTTTACTGATAAAGA+TGG 0.508772 4_3:-59265898 Msa0651760:CDS
TGGGATATGCGTGATAGAAA+AGG 0.509675 4_3:-59266201 Msa0651760:CDS
GAATAATTTAACCATCTGCC+AGG 0.509754 4_3:+59263882 None:intergenic
TGCTTTGCAACTACAGGAGA+TGG 0.510342 4_3:-59266093 Msa0651760:CDS
GGAGATGGTTCAATTGTTGT+GGG 0.516076 4_3:-59266078 Msa0651760:CDS
AACTGCATTGCCCTGGCAGA+TGG 0.519065 4_3:-59263893 Msa0651760:three_prime_UTR
TTGTTGTGGGGTCTCTTGAT+GGG 0.520579 4_3:-59266065 Msa0651760:CDS
CGAATAAGGCTTTGTTGATG+AGG 0.523505 4_3:-59266449 Msa0651760:CDS
GGGCAAGTTCAGTGTGATAT+GGG 0.523866 4_3:-59264456 Msa0651760:CDS
CTACCACCAACGGAGCTTCA+GGG 0.527377 4_3:+59264288 None:intergenic
CTGATGAGTCCCTTGAATAG+TGG 0.528395 4_3:-59266408 Msa0651760:CDS
GGAGAGAATCCATTTAGCGT+TGG 0.530109 4_3:+59267061 None:intergenic
ATGGGGCTGATATTACTATG+AGG 0.530532 4_3:-59266308 Msa0651760:CDS
GGAGTGAGCTTCAACAATCT+AGG 0.532631 4_3:+59265826 None:intergenic
AAATCACCTCTAGACCGATA+AGG 0.534172 4_3:+59266645 None:intergenic
ACGGTAAGGAGTTTATCGGT+TGG 0.534675 4_3:-59266743 Msa0651760:CDS
GAATTTCCGGTAGGATTCAT+CGG 0.534793 4_3:+59266842 None:intergenic
TTTGACCGGGGAATTCGAAA+GGG 0.535186 4_3:-59266513 Msa0651760:CDS
GTCGACATCATCGAGGTTGG+TGG 0.536613 4_3:+59267208 None:intergenic
CCTTGGTTCCAATGCAACAC+TGG 0.536702 4_3:+59266147 None:intergenic
CTGTTTCCGATGATGGCTCC+GGG 0.537725 4_3:-59266680 Msa0651760:CDS
TTCCGGTAGGATTCATCGGT+GGG 0.539088 4_3:+59266846 None:intergenic
AAAGATGGGAAGACAAAGAC+TGG 0.541574 4_3:-59265883 Msa0651760:CDS
GAGTTTGAAGAGGCTGCAAA+TGG 0.542974 4_3:-59266615 Msa0651760:CDS
GAGGTTGGTGGAATGTGATT+GGG 0.544190 4_3:+59267220 None:intergenic
GTAATCGGAGAACCAAGCCC+TGG 0.550925 4_3:+59265991 None:intergenic
CGTGTTGATTTCGTCTCCAA+CGG 0.558067 4_3:-59266888 Msa0651760:CDS
CGCCACCTTGTTGCAACTGT+GGG 0.559509 4_3:-59264476 Msa0651760:CDS
ACTCTTCCCGGAGCCATCAT+CGG 0.560365 4_3:+59266674 None:intergenic
CATTGTTTACTGATAAAGAT+GGG 0.561253 4_3:-59265897 Msa0651760:CDS
ACTGTTATCAAGAGCACCTA+GGG 0.561865 4_3:+59266575 None:intergenic
TCATGGTGGCCATTTCTCAT+GGG 0.562447 4_3:-59265767 Msa0651760:intron
AGTCGGAATCGGAAAATTCA+CGG 0.563110 4_3:+59267315 None:intergenic
GGGGTTGCTGTGAAATATGG+AGG 0.563576 4_3:-59266492 Msa0651760:CDS
GGTCGTATGGGAAACAGGAT+AGG 0.565383 4_3:-59265853 Msa0651760:CDS
TTGGGTGAAGCCGGAAGCCG+CGG 0.568941 4_3:-59266724 Msa0651760:CDS
AGCGTCGACATCATCGAGGT+TGG 0.570308 4_3:+59267205 None:intergenic
GGTCTCTTGATGGGAAGATA+AGG 0.572601 4_3:-59266056 Msa0651760:CDS
GAACAAAACGATGTCGCTCA+AGG 0.572778 4_3:-59266993 Msa0651760:CDS
AAAAGAAAACTGCATTGCCC+TGG 0.573868 4_3:-59263900 Msa0651760:three_prime_UTR
CCTCTAGACCGATAAGGCTC+CGG 0.574522 4_3:+59266651 None:intergenic
ATAGGAGTTGCTACCACCAA+CGG 0.574538 4_3:+59264278 None:intergenic
TTCCCACCGATGAATCCTAC+CGG 0.575350 4_3:-59266848 Msa0651760:CDS
CCAGTGTTGCATTGGAACCA+AGG 0.575783 4_3:-59266147 Msa0651760:CDS
TTTAAGAGCCCAGACACCGT+TGG 0.580496 4_3:+59266872 None:intergenic
ACGCCACCTTGTTGCAACTG+TGG 0.586989 4_3:-59264477 Msa0651760:CDS
GGAAACAGCATCTTCCCAAA+CGG 0.591198 4_3:+59266695 None:intergenic
GGTATTCAAACCCTAACCCT+AGG 0.591767 4_3:-59266591 Msa0651760:CDS
GAATAAGGCTTTGTTGATGA+GGG 0.593377 4_3:-59266448 Msa0651760:CDS
TACCACCAACGGAGCTTCAG+GGG 0.595085 4_3:+59264289 None:intergenic
CAGTGTTGCATTGGAACCAA+GGG 0.595617 4_3:-59266146 Msa0651760:CDS
TTGTTCGTCGTAATCTGAGT+CGG 0.595936 4_3:+59267298 None:intergenic
AGGAAAGAAAATATAAACGG+AGG 0.596464 4_3:+59264211 None:intergenic
TGGGGCTGATATTACTATGA+GGG 0.598346 4_3:-59266307 Msa0651760:CDS
TTGACCGGGGAATTCGAAAG+GGG 0.605039 4_3:-59266512 Msa0651760:CDS
GCTCTATCAGTATGTCTGGA+AGG 0.609197 4_3:-59264247 Msa0651760:CDS
TTAACCTTATTCTCTTCCGT+CGG 0.609586 4_3:+59266771 None:intergenic
TTTGAAGAGGCTGCAAATGG+TGG 0.611463 4_3:-59266612 Msa0651760:CDS
TAAGAAAGAAAAGAGATACA+TGG 0.612272 4_3:+59264096 None:intergenic
CCGGAGCCTTATCGGTCTAG+AGG 0.612763 4_3:-59266651 Msa0651760:CDS
ATATGGAGGGAATCTCCAGC+AGG 0.615434 4_3:-59266478 Msa0651760:CDS
TGGTTCAGCTTCGAAGCATG+TGG 0.615986 4_3:+59266381 None:intergenic
GGGATGAAGATTGAACGTCT+TGG 0.616486 4_3:+59267240 None:intergenic
TTTCCGGTAGGATTCATCGG+TGG 0.620316 4_3:+59266845 None:intergenic
CAGGGAAGATTGTTTCAGAG+TGG 0.620928 4_3:-59266344 Msa0651760:CDS
TTCGAATAAATCGATGAGGA+TGG 0.623115 4_3:-59266028 Msa0651760:CDS
GAGTGTTGCCGCCGATGTGA+AGG 0.626265 4_3:+59267084 None:intergenic
AAGCTTTACCTTCACATCGG+CGG 0.627540 4_3:-59267092 Msa0651760:CDS
TGACCGGGGAATTCGAAAGG+GGG 0.636755 4_3:-59266511 Msa0651760:CDS
GGTCAATGGATTCTCAAAGT+CGG 0.637822 4_3:-59266972 Msa0651760:CDS
AACTGTTATCAAGAGCACCT+AGG 0.637908 4_3:+59266574 None:intergenic
GGGTTGCTGTGAAATATGGA+GGG 0.641780 4_3:-59266491 Msa0651760:CDS
TTTGATGGAGGAGTTTGAAG+AGG 0.645411 4_3:-59266625 Msa0651760:CDS
AATAATTTAACCATCTGCCA+GGG 0.646364 4_3:+59263883 None:intergenic
TGTGGCGCTCCACTATTCAA+GGG 0.647458 4_3:+59266399 None:intergenic
TTCAGTGACGAATTTCCGGT+AGG 0.648527 4_3:+59266833 None:intergenic
AGCAGAAAAGCTGTTAAATG+CGG 0.648820 4_3:+59263956 None:intergenic
ACGAGTCAATCATAGAATCA+CGG 0.650778 4_3:-59264343 Msa0651760:CDS
ACTTGCCCACAGTTGCAACA+AGG 0.657504 4_3:+59264471 None:intergenic
GTCTAGAGGTGATTTGATGG+AGG 0.661438 4_3:-59266637 Msa0651760:CDS
TTCCCAAACGGAATCATCCG+CGG 0.661974 4_3:+59266707 None:intergenic
GAGATGGTTCAATTGTTGTG+GGG 0.667715 4_3:-59266077 Msa0651760:CDS
TGTTTACGGTTTATCACCGA+CGG 0.671523 4_3:-59266787 Msa0651760:CDS
ACCAGCTTGATATAGAAACA+GGG 0.678641 4_3:-59266362 Msa0651760:CDS
GTCAAGCTTTACCTTCACAT+CGG 0.680830 4_3:-59267095 Msa0651760:CDS
GAATGTTACAGGAATCAACA+AGG 0.685254 4_3:-59264404 Msa0651760:CDS
TGTATTCGAATAAATCGATG+AGG 0.688375 4_3:-59266032 Msa0651760:CDS
GTGGAAGTTTGAGAAAGATG+GGG 0.691794 4_3:-59266325 Msa0651760:CDS
CCAGCCAAATGTGAATCCAG+AGG 0.694133 4_3:+59265805 None:intergenic
TGCCCACAGTTGCAACAAGG+TGG 0.704608 4_3:+59264474 None:intergenic
CGTTGGAGACGAAATCAACA+CGG 0.722626 4_3:+59266889 None:intergenic
GTTCGGTGGAAACCCTAGCG+CGG 0.733834 4_3:+59266940 None:intergenic
ACTACCAATAAGTTTCATGG+TGG 0.735152 4_3:-59265781 Msa0651760:CDS
AATGTTACAGGAATCAACAA+GGG 0.738192 4_3:-59264403 Msa0651760:CDS
GTTTAGCGTCGACATCATCG+AGG 0.758315 4_3:+59267201 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATATGAATATGAAT+GGG - chr4_3:59265774-59265793 Msa0651760:CDS 10.0%
!! CTATTTAAAAAAATTGTAAA+AGG - chr4_3:59266465-59266484 Msa0651760:CDS 10.0%
!! TTGATTGATTATAGTATATT+GGG + chr4_3:59263998-59264017 None:intergenic 15.0%
!! ATTGATTGATTATAGTATAT+TGG + chr4_3:59263999-59264018 None:intergenic 15.0%
!! TGAAAATTGAAATTTGAATT+GGG + chr4_3:59264026-59264045 None:intergenic 15.0%
!! TTGAAAATTGAAATTTGAAT+TGG + chr4_3:59264027-59264046 None:intergenic 15.0%
!! CATATAAATATGAATATGAA+TGG - chr4_3:59265773-59265792 Msa0651760:CDS 15.0%
!! ATTAGGAAAGAAAATATAAA+CGG + chr4_3:59267225-59267244 None:intergenic 15.0%
!! AAACATCTTTAATTGAAGTT+CGG + chr4_3:59264510-59264529 None:intergenic 20.0%
!! ATATCACAAATGATACTAAA+GGG - chr4_3:59265146-59265165 Msa0651760:intron 20.0%
!!! ATTAATTCTCTTGCTATTAT+AGG - chr4_3:59266140-59266159 Msa0651760:CDS 20.0%
!! GATAATGTAATCCATAAATT+TGG - chr4_3:59266598-59266617 Msa0651760:CDS 20.0%
!!! TTATTTTGTGATTACAAGTT+TGG - chr4_3:59267363-59267382 Msa0651760:exon 20.0%
!!! TATTTTGTGATTACAAGTTT+GGG - chr4_3:59267364-59267383 Msa0651760:five_prime_UTR 20.0%
!! TCTGTATAATTTCCAAATTA+AGG - chr4_3:59267427-59267446 Msa0651760:five_prime_UTR 20.0%
! TAGTATATTGGGATTTGAAA+TGG + chr4_3:59263987-59264006 None:intergenic 25.0%
! TGATTTCGATTTCAATTTCA+TGG - chr4_3:59264070-59264089 Msa0651760:three_prime_UTR 25.0%
! GATTTCGATTTCAATTTCAT+GGG - chr4_3:59264071-59264090 Msa0651760:three_prime_UTR 25.0%
!!! AGAAGAGTATTTGAGTTTTA+AGG + chr4_3:59264261-59264280 None:intergenic 25.0%
! GAACTTCAATTAAAGATGTT+TGG - chr4_3:59264509-59264528 Msa0651760:intron 25.0%
! GATATCACAAATGATACTAA+AGG - chr4_3:59265145-59265164 Msa0651760:intron 25.0%
! ACATTGTTTACTGATAAAGA+TGG - chr4_3:59265532-59265551 Msa0651760:intron 25.0%
! CATTGTTTACTGATAAAGAT+GGG - chr4_3:59265533-59265552 Msa0651760:intron 25.0%
! TCAAAAACATTGTCAAAAAG+CGG + chr4_3:59265952-59265971 None:intergenic 25.0%
! TGAATTAAATAGCATATCAC+AGG - chr4_3:59265969-59265988 Msa0651760:CDS 25.0%
! TTTGACATTAATACCATCAA+TGG - chr4_3:59266072-59266091 Msa0651760:CDS 25.0%
! ACCACTTAAAATTTCATTCT+AGG - chr4_3:59266097-59266116 Msa0651760:CDS 25.0%
!! ACCTAGAATGAAATTTTAAG+TGG + chr4_3:59266101-59266120 None:intergenic 25.0%
!! TTCTAGGTTTTCTTTTGTAA+AGG - chr4_3:59266113-59266132 Msa0651760:CDS 25.0%
!! TCTAGGTTTTCTTTTGTAAA+GGG - chr4_3:59266114-59266133 Msa0651760:CDS 25.0%
!! ACTTTCTGTTACTTATGTTT+GGG - chr4_3:59266270-59266289 Msa0651760:CDS 25.0%
! ATAATGGTAGCATAAGTAAT+GGG - chr4_3:59266440-59266459 Msa0651760:CDS 25.0%
!! AATTTCACTTAATGAGTTGA+TGG + chr4_3:59266576-59266595 None:intergenic 25.0%
! AATGATATCAGCCAAATTTA+TGG + chr4_3:59266612-59266631 None:intergenic 25.0%
!!! AAATTGTTATTTGTTCACAG+TGG - chr4_3:59266681-59266700 Msa0651760:CDS 25.0%
! TGATCAGTGAGTTATAAATA+TGG - chr4_3:59266747-59266766 Msa0651760:CDS 25.0%
!! GGAATGTTAATTTAAAGTGA+TGG - chr4_3:59266832-59266851 Msa0651760:CDS 25.0%
!!! TCATTTGTTTTTTGTCTTTC+AGG - chr4_3:59266908-59266927 Msa0651760:CDS 25.0%
! AAATATAAACGGAGGTTTAA+CGG + chr4_3:59267214-59267233 None:intergenic 25.0%
!! AGAAATTTGAAACCTTCAAA+TGG + chr4_3:59267250-59267269 None:intergenic 25.0%
!!! TAGTTTGTGCAGAAAATTTT+AGG - chr4_3:59267308-59267327 Msa0651760:CDS 25.0%
! TAAGAAAGAAAAGAGATACA+TGG + chr4_3:59267337-59267356 None:intergenic 25.0%
!!! TTTTGGTTATTACACAAGTT+TGG - chr4_3:59267392-59267411 Msa0651760:five_prime_UTR 25.0%
! TTTGGTTATTACACAAGTTT+GGG - chr4_3:59267393-59267412 Msa0651760:five_prime_UTR 25.0%
AATGGAAATGGATCAGTTAA+CGG + chr4_3:59263969-59263988 None:intergenic 30.0%
! ATTGGGATTTGAAATGGAAA+TGG + chr4_3:59263981-59264000 None:intergenic 30.0%
GAGAATAAGGTTAAGGTTTA+CGG - chr4_3:59264668-59264687 Msa0651760:intron 30.0%
TGTATTCGAATAAATCGATG+AGG - chr4_3:59265398-59265417 Msa0651760:intron 30.0%
!!! ATGTTACTTTTGATGGAAAG+TGG - chr4_3:59265470-59265489 Msa0651760:intron 30.0%
!!! TGTTACTTTTGATGGAAAGT+GGG - chr4_3:59265471-59265490 Msa0651760:intron 30.0%
ACATGACAATGCAAAATAGA+AGG + chr4_3:59265727-59265746 None:intergenic 30.0%
CAATCAGTATTGTTAAACAG+CGG + chr4_3:59266030-59266049 None:intergenic 30.0%
!! TTTTAAGTGGTAACCATTGA+TGG + chr4_3:59266088-59266107 None:intergenic 30.0%
! CTAGGTTTTCTTTTGTAAAG+GGG - chr4_3:59266115-59266134 Msa0651760:CDS 30.0%
!! TTATTTGTTGTTACCATGTG+CGG - chr4_3:59266164-59266183 Msa0651760:CDS 30.0%
! CACTTTCTGTTACTTATGTT+TGG - chr4_3:59266269-59266288 Msa0651760:CDS 30.0%
AATGCTGCAAGATGTATAAA+TGG - chr4_3:59266385-59266404 Msa0651760:CDS 30.0%
TGGGTGAGATTAAATGATAA+TGG - chr4_3:59266424-59266443 Msa0651760:CDS 30.0%
! GATAATGGTAGCATAAGTAA+TGG - chr4_3:59266439-59266458 Msa0651760:CDS 30.0%
TAATGGTAGCATAAGTAATG+GGG - chr4_3:59266441-59266460 Msa0651760:CDS 30.0%
AAAGGATGAAAAGCAAGTAT+AGG - chr4_3:59266483-59266502 Msa0651760:CDS 30.0%
TATGTCTTGTACTCTACTAA+TGG + chr4_3:59266513-59266532 None:intergenic 30.0%
!!! TACAAGACATAGTTTTTAGC+AGG - chr4_3:59266522-59266541 Msa0651760:CDS 30.0%
AATGTTACAGGAATCAACAA+GGG - chr4_3:59267027-59267046 Msa0651760:CDS 30.0%
! CTGTTACAAGATAGTATTGA+AGG - chr4_3:59267064-59267083 Msa0651760:CDS 30.0%
AATATAAACGGAGGTTTAAC+GGG + chr4_3:59267213-59267232 None:intergenic 30.0%
AGGAAAGAAAATATAAACGG+AGG + chr4_3:59267222-59267241 None:intergenic 30.0%
CTTTCCTAATTTCCATTTGA+AGG - chr4_3:59267235-59267254 Msa0651760:CDS 30.0%
GAAACCTTCAAATGGAAATT+AGG + chr4_3:59267242-59267261 None:intergenic 30.0%
! ATCTCTTTTCTTTCTTACAC+TGG - chr4_3:59267340-59267359 Msa0651760:CDS 30.0%
!! AAACTGCTGTTTCCTTAATT+TGG + chr4_3:59267442-59267461 None:intergenic 30.0%
AATAATTTAACCATCTGCCA+GGG + chr4_3:59267550-59267569 None:intergenic 30.0%
!! CGGTTTTATAGCGTTAATGT+CGG + chr4_3:59263949-59263968 None:intergenic 35.0%
!! GATTGTGATTTTGAAGGTGA+AGG + chr4_3:59264284-59264303 None:intergenic 35.0%
! GTCTCTGATTGTGATTTTGA+AGG + chr4_3:59264290-59264309 None:intergenic 35.0%
! TAAAGCTTGACAGCGTTTTT+GGG + chr4_3:59264326-59264345 None:intergenic 35.0%
CATCTTTAATTGAAGTTCGG+TGG + chr4_3:59264507-59264526 None:intergenic 35.0%
GAAATTCAGTGACGAATTTC+CGG + chr4_3:59264604-59264623 None:intergenic 35.0%
TGCACGTTTGAGAATGTTTA+CGG - chr4_3:59264629-59264648 Msa0651760:intron 35.0%
TTAACCTTATTCTCTTCCGT+CGG + chr4_3:59264662-59264681 None:intergenic 35.0%
TAAGGTTAAGGTTTACGGTA+AGG - chr4_3:59264673-59264692 Msa0651760:intron 35.0%
GTTTACGGTAAGGAGTTTAT+CGG - chr4_3:59264683-59264702 Msa0651760:intron 35.0%
! AGTTTTCTTCTCAATGATGC+TGG - chr4_3:59264875-59264894 Msa0651760:intron 35.0%
!! CTCATCAACAAAGCCTTATT+CGG + chr4_3:59264983-59265002 None:intergenic 35.0%
!! GAATAAGGCTTTGTTGATGA+GGG - chr4_3:59264982-59265001 Msa0651760:intron 35.0%
AACCAGCTTGATATAGAAAC+AGG - chr4_3:59265067-59265086 Msa0651760:intron 35.0%
ACCAGCTTGATATAGAAACA+GGG - chr4_3:59265068-59265087 Msa0651760:intron 35.0%
AGTGGAAGTTTGAGAAAGAT+GGG - chr4_3:59265104-59265123 Msa0651760:intron 35.0%
TGATACTAAAGGGTCACAAT+TGG - chr4_3:59265156-59265175 Msa0651760:intron 35.0%
!!! TTTTAGGGTTGGATGATAAC+AGG - chr4_3:59265197-59265216 Msa0651760:intron 35.0%
!!! AAGGGCATCAATTTTCAAGA+GGG - chr4_3:59265302-59265321 Msa0651760:intron 35.0%
TTTCAATGCTTTGCAACTAC+AGG - chr4_3:59265331-59265350 Msa0651760:intron 35.0%
TTCGAATAAATCGATGAGGA+TGG - chr4_3:59265402-59265421 Msa0651760:intron 35.0%
GTAACATCAACGCTTGTAAT+CGG + chr4_3:59265457-59265476 None:intergenic 35.0%
!!! AGCGTTGATGTTACTTTTGA+TGG - chr4_3:59265463-59265482 Msa0651760:intron 35.0%
GGAACTACCAATAAGTTTCA+TGG - chr4_3:59265646-59265665 Msa0651760:intron 35.0%
ACTACCAATAAGTTTCATGG+TGG - chr4_3:59265649-59265668 Msa0651760:intron 35.0%
GATTGATTACCCATGAGAAA+TGG + chr4_3:59265675-59265694 None:intergenic 35.0%
CACACAATGTTGTCAATTGT+CGG - chr4_3:59265872-59265891 Msa0651760:CDS 35.0%
TTGTCAATTGTCGGAAATAG+CGG - chr4_3:59265881-59265900 Msa0651760:CDS 35.0%
GGTATAGAACTATTGCATAG+CGG + chr4_3:59265919-59265938 None:intergenic 35.0%
TAGCATATCACAGGAAATAG+CGG - chr4_3:59265978-59265997 Msa0651760:CDS 35.0%
!! GCTTTTAAACAGAAAGCGTA+TGG + chr4_3:59266296-59266315 None:intergenic 35.0%
ACGCTTTCTGTTTAAAAGCT+AGG - chr4_3:59266297-59266316 Msa0651760:CDS 35.0%
TGATCCATATAATAGTGCGA+TGG - chr4_3:59266339-59266358 Msa0651760:CDS 35.0%
TTCACCATCGCACTATTATA+TGG + chr4_3:59266346-59266365 None:intergenic 35.0%
! TCACCCATCATTTTCAGAAT+CGG + chr4_3:59266411-59266430 None:intergenic 35.0%
AATGGTAGCATAAGTAATGG+GGG - chr4_3:59266442-59266461 Msa0651760:CDS 35.0%
AAACAAGGAATTCTATCTCG+AGG + chr4_3:59266788-59266807 None:intergenic 35.0%
TATGCAGCATGGAATAAACA+AGG + chr4_3:59266803-59266822 None:intergenic 35.0%
AAATGATTAATACTTGCCGC+GGG + chr4_3:59266894-59266913 None:intergenic 35.0%
CAAATGATTAATACTTGCCG+CGG + chr4_3:59266895-59266914 None:intergenic 35.0%
GAATGTTACAGGAATCAACA+AGG - chr4_3:59267026-59267045 Msa0651760:CDS 35.0%
ACGAGTCAATCATAGAATCA+CGG - chr4_3:59267087-59267106 Msa0651760:CDS 35.0%
CTGATAGAGCTAACTTTCAT+AGG + chr4_3:59267173-59267192 None:intergenic 35.0%
! TGTGATTACAAGTTTGGGTT+TGG - chr4_3:59267369-59267388 Msa0651760:five_prime_UTR 35.0%
!! TACAAGTTTGGGTTTGGTTT+TGG - chr4_3:59267375-59267394 Msa0651760:five_prime_UTR 35.0%
AGCAGAAAAGCTGTTAAATG+CGG + chr4_3:59267477-59267496 None:intergenic 35.0%
GAATAATTTAACCATCTGCC+AGG + chr4_3:59267551-59267570 None:intergenic 35.0%
AGTCGGAATCGGAAAATTCA+CGG + chr4_3:59264118-59264137 None:intergenic 40.0%
TTGTTCGTCGTAATCTGAGT+CGG + chr4_3:59264135-59264154 None:intergenic 40.0%
! GTAAAGCTTGACAGCGTTTT+TGG + chr4_3:59264327-59264346 None:intergenic 40.0%
GTCAAGCTTTACCTTCACAT+CGG - chr4_3:59264335-59264354 Msa0651760:CDS 40.0%
GAGAGAATCCATTTAGCGTT+GGG + chr4_3:59264371-59264390 None:intergenic 40.0%
! GGTCAATGGATTCTCAAAGT+CGG - chr4_3:59264458-59264477 Msa0651760:CDS 40.0%
GAATTTCCGGTAGGATTCAT+CGG + chr4_3:59264591-59264610 None:intergenic 40.0%
TGTTTACGGTTTATCACCGA+CGG - chr4_3:59264643-59264662 Msa0651760:intron 40.0%
GACGGAAGAGAATAAGGTTA+AGG - chr4_3:59264661-59264680 Msa0651760:intron 40.0%
AAATCACCTCTAGACCGATA+AGG + chr4_3:59264788-59264807 None:intergenic 40.0%
TTTGATGGAGGAGTTTGAAG+AGG - chr4_3:59264805-59264824 Msa0651760:intron 40.0%
!! ACTGTTATCAAGAGCACCTA+GGG + chr4_3:59264858-59264877 None:intergenic 40.0%
!! AACTGTTATCAAGAGCACCT+AGG + chr4_3:59264859-59264878 None:intergenic 40.0%
!! AGGTTTACCGGAATTTTGAC+CGG - chr4_3:59264903-59264922 Msa0651760:intron 40.0%
!! CGAATAAGGCTTTGTTGATG+AGG - chr4_3:59264981-59265000 Msa0651760:intron 40.0%
!! TCCCTGTTTCTATATCAAGC+TGG + chr4_3:59265072-59265091 None:intergenic 40.0%
GAGTGGAAGTTTGAGAAAGA+TGG - chr4_3:59265103-59265122 Msa0651760:intron 40.0%
GTGGAAGTTTGAGAAAGATG+GGG - chr4_3:59265105-59265124 Msa0651760:intron 40.0%
ATGGGGCTGATATTACTATG+AGG - chr4_3:59265122-59265141 Msa0651760:intron 40.0%
TGGGGCTGATATTACTATGA+GGG - chr4_3:59265123-59265142 Msa0651760:intron 40.0%
ATGATAACAGGCTCTGTCAA+TGG - chr4_3:59265209-59265228 Msa0651760:intron 40.0%
TGATAACAGGCTCTGTCAAT+GGG - chr4_3:59265210-59265229 Msa0651760:intron 40.0%
TGGGATATGCGTGATAGAAA+AGG - chr4_3:59265229-59265248 Msa0651760:intron 40.0%
CTCTTGAAAATTGATGCCCT+TGG + chr4_3:59265303-59265322 None:intergenic 40.0%
!!! CAAGGGCATCAATTTTCAAG+AGG - chr4_3:59265301-59265320 Msa0651760:intron 40.0%
AGGAGATGGTTCAATTGTTG+TGG - chr4_3:59265351-59265370 Msa0651760:intron 40.0%
GGAGATGGTTCAATTGTTGT+GGG - chr4_3:59265352-59265371 Msa0651760:intron 40.0%
GAGATGGTTCAATTGTTGTG+GGG - chr4_3:59265353-59265372 Msa0651760:intron 40.0%
! TTTTGATGGAAAGTGGGTGT+TGG - chr4_3:59265477-59265496 Msa0651760:intron 40.0%
TTTGATGGAAAGTGGGTGTT+GGG - chr4_3:59265478-59265497 Msa0651760:intron 40.0%
GGGTACAACTGATACTTATC+TGG - chr4_3:59265498-59265517 Msa0651760:intron 40.0%
AAAGATGGGAAGACAAAGAC+TGG - chr4_3:59265547-59265566 Msa0651760:intron 40.0%
!!! AAGACAAAGACTGGTTTTGG+TGG - chr4_3:59265556-59265575 Msa0651760:intron 40.0%
ATGGCCACCATGAAACTTAT+TGG + chr4_3:59265656-59265675 None:intergenic 40.0%
GAATGTGTATGAGTGTGTGT+TGG + chr4_3:59265831-59265850 None:intergenic 40.0%
CAATTGACAACATTGTGTGC+AGG + chr4_3:59265871-59265890 None:intergenic 40.0%
!! ACTAGGGTGTTATTGGTACA+TGG - chr4_3:59266189-59266208 Msa0651760:CDS 40.0%
!!! TGTCTGGTTTTGCAATAGTG+TGG - chr4_3:59266225-59266244 Msa0651760:CDS 40.0%
!!! GTCTGGTTTTGCAATAGTGT+GGG - chr4_3:59266226-59266245 Msa0651760:CDS 40.0%
!!! TCTGGTTTTGCAATAGTGTG+GGG - chr4_3:59266227-59266246 Msa0651760:CDS 40.0%
GTGCGATGGTGAAATTATCA+TGG - chr4_3:59266353-59266372 Msa0651760:CDS 40.0%
! ATGGCCGATTCTGAAAATGA+TGG - chr4_3:59266404-59266423 Msa0651760:CDS 40.0%
! TGGCCGATTCTGAAAATGAT+GGG - chr4_3:59266405-59266424 Msa0651760:CDS 40.0%
TTAATAGACGACATGACTGC+AGG - chr4_3:59266657-59266676 Msa0651760:CDS 40.0%
! TCTATCTCGAGGTGCTTAAA+AGG + chr4_3:59266777-59266796 None:intergenic 40.0%
! TGTGATATGGGATTTTCAGC+AGG - chr4_3:59266986-59267005 Msa0651760:CDS 40.0%
!! GTTAGCTCTATCAGTATGTC+TGG - chr4_3:59267179-59267198 Msa0651760:CDS 40.0%
AAAAGAAAACTGCATTGCCC+TGG - chr4_3:59267530-59267549 Msa0651760:five_prime_UTR 40.0%
GTCGTAATCTGAGTCGGAAT+CGG + chr4_3:59264129-59264148 None:intergenic 45.0%
GGGATGAAGATTGAACGTCT+TGG + chr4_3:59264193-59264212 None:intergenic 45.0%
!! GAGGTTGGTGGAATGTGATT+GGG + chr4_3:59264213-59264232 None:intergenic 45.0%
!! TTGACAGCGTTTTTGGGAAG+TGG + chr4_3:59264320-59264339 None:intergenic 45.0%
AAGCTTTACCTTCACATCGG+CGG - chr4_3:59264338-59264357 Msa0651760:CDS 45.0%
GGAGAGAATCCATTTAGCGT+TGG + chr4_3:59264372-59264391 None:intergenic 45.0%
!! ATTTTTGACGAAGGCGTAGG+AGG + chr4_3:59264405-59264424 None:intergenic 45.0%
!!! GTCATTTTTGACGAAGGCGT+AGG + chr4_3:59264408-59264427 None:intergenic 45.0%
!!! GTCGTCGTCATTTTTGACGA+AGG + chr4_3:59264414-59264433 None:intergenic 45.0%
GAACAAAACGATGTCGCTCA+AGG - chr4_3:59264437-59264456 Msa0651760:CDS 45.0%
CGTTGGAGACGAAATCAACA+CGG + chr4_3:59264544-59264563 None:intergenic 45.0%
!! CGTGTTGATTTCGTCTCCAA+CGG - chr4_3:59264542-59264561 Msa0651760:intron 45.0%
TTCAGTGACGAATTTCCGGT+AGG + chr4_3:59264600-59264619 None:intergenic 45.0%
ATCACCGACGGAAGAGAATA+AGG - chr4_3:59264655-59264674 Msa0651760:intron 45.0%
ACGGTAAGGAGTTTATCGGT+TGG - chr4_3:59264687-59264706 Msa0651760:intron 45.0%
! CGGTAAGGAGTTTATCGGTT+GGG - chr4_3:59264688-59264707 Msa0651760:intron 45.0%
GGAAACAGCATCTTCCCAAA+CGG + chr4_3:59264738-59264757 None:intergenic 45.0%
!! GAAGATGCTGTTTCCGATGA+TGG - chr4_3:59264743-59264762 Msa0651760:intron 45.0%
TCGGTCTAGAGGTGATTTGA+TGG - chr4_3:59264790-59264809 Msa0651760:intron 45.0%
GTCTAGAGGTGATTTGATGG+AGG - chr4_3:59264793-59264812 Msa0651760:intron 45.0%
GAGTTTGAAGAGGCTGCAAA+TGG - chr4_3:59264815-59264834 Msa0651760:intron 45.0%
TTTGAAGAGGCTGCAAATGG+TGG - chr4_3:59264818-59264837 Msa0651760:intron 45.0%
GGTATTCAAACCCTAACCCT+AGG - chr4_3:59264839-59264858 Msa0651760:intron 45.0%
!! ATCAAGAGCACCTAGGGTTA+GGG + chr4_3:59264852-59264871 None:intergenic 45.0%
!! TATCAAGAGCACCTAGGGTT+AGG + chr4_3:59264853-59264872 None:intergenic 45.0%
!! TCTCAATGATGCTGGCTTTC+AGG - chr4_3:59264883-59264902 Msa0651760:intron 45.0%
!! ATGCTGGCTTTCAGGTTTAC+CGG - chr4_3:59264891-59264910 Msa0651760:intron 45.0%
!! GGTTTACCGGAATTTTGACC+GGG - chr4_3:59264904-59264923 Msa0651760:intron 45.0%
!! GTTTACCGGAATTTTGACCG+GGG - chr4_3:59264905-59264924 Msa0651760:intron 45.0%
GAATTCCCCGGTCAAAATTC+CGG + chr4_3:59264913-59264932 None:intergenic 45.0%
! TTTTGACCGGGGAATTCGAA+AGG - chr4_3:59264916-59264935 Msa0651760:intron 45.0%
TTTGACCGGGGAATTCGAAA+GGG - chr4_3:59264917-59264936 Msa0651760:intron 45.0%
AAGGGGGTTGCTGTGAAATA+TGG - chr4_3:59264935-59264954 Msa0651760:intron 45.0%
GGGTTGCTGTGAAATATGGA+GGG - chr4_3:59264939-59264958 Msa0651760:intron 45.0%
CTGATGAGTCCCTTGAATAG+TGG - chr4_3:59265022-59265041 Msa0651760:intron 45.0%
CAGGGAAGATTGTTTCAGAG+TGG - chr4_3:59265086-59265105 Msa0651760:intron 45.0%
AGGGTCACAATTGGATCCTT+CGG - chr4_3:59265165-59265184 Msa0651760:intron 45.0%
! CTTCGGAGTCGACGTTTTTA+GGG - chr4_3:59265182-59265201 Msa0651760:intron 45.0%
CAGTGTTGCATTGGAACCAA+GGG - chr4_3:59265284-59265303 Msa0651760:intron 45.0%
TGCTTTGCAACTACAGGAGA+TGG - chr4_3:59265337-59265356 Msa0651760:intron 45.0%
ATTGTTGTGGGGTCTCTTGA+TGG - chr4_3:59265364-59265383 Msa0651760:intron 45.0%
TTGTTGTGGGGTCTCTTGAT+GGG - chr4_3:59265365-59265384 Msa0651760:intron 45.0%
GGTCTCTTGATGGGAAGATA+AGG - chr4_3:59265374-59265393 Msa0651760:intron 45.0%
!!! GGGAAGACAAAGACTGGTTT+TGG - chr4_3:59265553-59265572 Msa0651760:intron 45.0%
!!! ACTGGTTTTGGTGGTCGTAT+GGG - chr4_3:59265565-59265584 Msa0651760:intron 45.0%
GGAGTGAGCTTCAACAATCT+AGG + chr4_3:59265607-59265626 None:intergenic 45.0%
ATTGTTGAAGCTCACTCCTC+TGG - chr4_3:59265609-59265628 Msa0651760:intron 45.0%
CACTCCTCTGGATTCACATT+TGG - chr4_3:59265621-59265640 Msa0651760:intron 45.0%
TTCATGGTGGCCATTTCTCA+TGG - chr4_3:59265662-59265681 Msa0651760:intron 45.0%
TCATGGTGGCCATTTCTCAT+GGG - chr4_3:59265663-59265682 Msa0651760:intron 45.0%
TCAAAAAGCGGTTATAGCGC+AGG + chr4_3:59265940-59265959 None:intergenic 45.0%
TGTTACCATGTGCGGAAACT+AGG - chr4_3:59266172-59266191 Msa0651760:CDS 45.0%
GTTACCATGTGCGGAAACTA+GGG - chr4_3:59266173-59266192 Msa0651760:CDS 45.0%
! TGCGGAAACTAGGGTGTTAT+TGG - chr4_3:59266182-59266201 Msa0651760:CDS 45.0%
!! GGGTGTTATTGGTACATGGA+TGG - chr4_3:59266193-59266212 Msa0651760:CDS 45.0%
!!! CTGGTTTTGCAATAGTGTGG+GGG - chr4_3:59266228-59266247 Msa0651760:CDS 45.0%
! CAGAAAGTGTATGACCCACT+AGG + chr4_3:59266258-59266277 None:intergenic 45.0%
TTACTGAGTTAGTCAACCCG+CGG - chr4_3:59266875-59266894 Msa0651760:CDS 45.0%
! GTCTTTCAGGTCACTGAGAA+TGG - chr4_3:59266921-59266940 Msa0651760:CDS 45.0%
TGGGCAAGTTCAGTGTGATA+TGG - chr4_3:59266973-59266992 Msa0651760:CDS 45.0%
GGGCAAGTTCAGTGTGATAT+GGG - chr4_3:59266974-59266993 Msa0651760:CDS 45.0%
ACAGTGCTCACGAATGTTAC+AGG - chr4_3:59267015-59267034 Msa0651760:CDS 45.0%
ATAGGAGTTGCTACCACCAA+CGG + chr4_3:59267155-59267174 None:intergenic 45.0%
GCTCTATCAGTATGTCTGGA+AGG - chr4_3:59267183-59267202 Msa0651760:CDS 45.0%
GGAAAATTCACGGTCTTCGC+GGG + chr4_3:59264108-59264127 None:intergenic 50.0%
CGGAAAATTCACGGTCTTCG+CGG + chr4_3:59264109-59264128 None:intergenic 50.0%
!! CGAGGTTGGTGGAATGTGAT+TGG + chr4_3:59264214-59264233 None:intergenic 50.0%
!! GTTTAGCGTCGACATCATCG+AGG + chr4_3:59264232-59264251 None:intergenic 50.0%
GCAACACTCCCAACGCTAAA+TGG - chr4_3:59264360-59264379 Msa0651760:CDS 50.0%
ACGATGTCGCTCAAGGTCAA+TGG - chr4_3:59264444-59264463 Msa0651760:CDS 50.0%
TCGGTTCAAAAATCCGCGCT+AGG - chr4_3:59264477-59264496 Msa0651760:CDS 50.0%
CGGTTCAAAAATCCGCGCTA+GGG - chr4_3:59264478-59264497 Msa0651760:CDS 50.0%
ATTTCGTCTCCAACGGTGTC+TGG - chr4_3:59264549-59264568 Msa0651760:intron 50.0%
TTTCGTCTCCAACGGTGTCT+GGG - chr4_3:59264550-59264569 Msa0651760:intron 50.0%
TTTAAGAGCCCAGACACCGT+TGG + chr4_3:59264561-59264580 None:intergenic 50.0%
TTCCCACCGATGAATCCTAC+CGG - chr4_3:59264582-59264601 Msa0651760:intron 50.0%
TTCCGGTAGGATTCATCGGT+GGG + chr4_3:59264587-59264606 None:intergenic 50.0%
TTTCCGGTAGGATTCATCGG+TGG + chr4_3:59264588-59264607 None:intergenic 50.0%
! GTTTATCGGTTGGGTGAAGC+CGG - chr4_3:59264697-59264716 Msa0651760:intron 50.0%
TTCCCAAACGGAATCATCCG+CGG + chr4_3:59264726-59264745 None:intergenic 50.0%
TTGACCGGGGAATTCGAAAG+GGG - chr4_3:59264918-59264937 Msa0651760:intron 50.0%
GGGGTTGCTGTGAAATATGG+AGG - chr4_3:59264938-59264957 Msa0651760:intron 50.0%
ATATGGAGGGAATCTCCAGC+AGG - chr4_3:59264952-59264971 Msa0651760:intron 50.0%
TGTGGCGCTCCACTATTCAA+GGG + chr4_3:59265034-59265053 None:intergenic 50.0%
ATGTGGCGCTCCACTATTCA+AGG + chr4_3:59265035-59265054 None:intergenic 50.0%
TGGTTCAGCTTCGAAGCATG+TGG + chr4_3:59265052-59265071 None:intergenic 50.0%
!! CCTAAAAACGTCGACTCCGA+AGG + chr4_3:59265184-59265203 None:intergenic 50.0%
! CCTTCGGAGTCGACGTTTTT+AGG - chr4_3:59265181-59265200 Msa0651760:intron 50.0%
!!! GGAGTCGACGTTTTTAGGGT+TGG - chr4_3:59265186-59265205 Msa0651760:intron 50.0%
CTAGTTCGCCAGTGTTGCAT+TGG - chr4_3:59265275-59265294 Msa0651760:intron 50.0%
CCTTGGTTCCAATGCAACAC+TGG + chr4_3:59265286-59265305 None:intergenic 50.0%
CCAGTGTTGCATTGGAACCA+AGG - chr4_3:59265283-59265302 Msa0651760:intron 50.0%
ATCGATGAGGATGGCGAAGA+CGG - chr4_3:59265411-59265430 Msa0651760:intron 50.0%
!!! GACTGGTTTTGGTGGTCGTA+TGG - chr4_3:59265564-59265583 Msa0651760:intron 50.0%
! TTGGTGGTCGTATGGGAAAC+AGG - chr4_3:59265572-59265591 Msa0651760:intron 50.0%
GGTCGTATGGGAAACAGGAT+AGG - chr4_3:59265577-59265596 Msa0651760:intron 50.0%
CCAGCCAAATGTGAATCCAG+AGG + chr4_3:59265628-59265647 None:intergenic 50.0%
CCTCTGGATTCACATTTGGC+TGG - chr4_3:59265625-59265644 Msa0651760:intron 50.0%
AACACCCTAGTTTCCGCACA+TGG + chr4_3:59266180-59266199 None:intergenic 50.0%
TGGATGGAACTTCTGCTGTC+TGG - chr4_3:59266209-59266228 Msa0651760:CDS 50.0%
TAGTGTGGGGGTAAACCTAG+TGG - chr4_3:59266240-59266259 Msa0651760:CDS 50.0%
AGTGTGGGGGTAAACCTAGT+GGG - chr4_3:59266241-59266260 Msa0651760:CDS 50.0%
CCAGATGCAAGTATGCAGCA+TGG + chr4_3:59266814-59266833 None:intergenic 50.0%
CCATGCTGCATACTTGCATC+TGG - chr4_3:59266811-59266830 Msa0651760:CDS 50.0%
ACTTGCCCACAGTTGCAACA+AGG + chr4_3:59266962-59266981 None:intergenic 50.0%
! AGCATAGCAGAGAGCGTGTC+AGG - chr4_3:59263908-59263927 Msa0651760:three_prime_UTR 55.0%
GTCGACATCATCGAGGTTGG+TGG + chr4_3:59264225-59264244 None:intergenic 55.0%
!! AGCGTCGACATCATCGAGGT+TGG + chr4_3:59264228-59264247 None:intergenic 55.0%
GGCGTAGGAGGTTCGTTTGT+CGG + chr4_3:59264393-59264412 None:intergenic 55.0%
AAGCCGCGGATGATTCCGTT+TGG - chr4_3:59264720-59264739 Msa0651760:intron 55.0%
AGCCGCGGATGATTCCGTTT+GGG - chr4_3:59264721-59264740 Msa0651760:intron 55.0%
! GCTGTTTCCGATGATGGCTC+CGG - chr4_3:59264749-59264768 Msa0651760:intron 55.0%
! CTGTTTCCGATGATGGCTCC+GGG - chr4_3:59264750-59264769 Msa0651760:intron 55.0%
ACTCTTCCCGGAGCCATCAT+CGG + chr4_3:59264759-59264778 None:intergenic 55.0%
ATAAGGCTCCGGACTCTTCC+CGG + chr4_3:59264771-59264790 None:intergenic 55.0%
! GGAAGAGTCCGGAGCCTTAT+CGG - chr4_3:59264771-59264790 Msa0651760:intron 55.0%
CCTCTAGACCGATAAGGCTC+CGG + chr4_3:59264782-59264801 None:intergenic 55.0%
TGACCGGGGAATTCGAAAGG+GGG - chr4_3:59264919-59264938 Msa0651760:intron 55.0%
CAACCCCCTTTCGAATTCCC+CGG + chr4_3:59264925-59264944 None:intergenic 55.0%
! ATGGCGAAGACGGCTTTTCC+AGG - chr4_3:59265421-59265440 Msa0651760:intron 55.0%
! TGGCGAAGACGGCTTTTCCA+GGG - chr4_3:59265422-59265441 Msa0651760:intron 55.0%
! AAGACGGCTTTTCCAGGGCT+TGG - chr4_3:59265427-59265446 Msa0651760:intron 55.0%
GTAATCGGAGAACCAAGCCC+TGG + chr4_3:59265442-59265461 None:intergenic 55.0%
ACGCCACCTTGTTGCAACTG+TGG - chr4_3:59266953-59266972 Msa0651760:CDS 55.0%
CGCCACCTTGTTGCAACTGT+GGG - chr4_3:59266954-59266973 Msa0651760:CDS 55.0%
TGCCCACAGTTGCAACAAGG+TGG + chr4_3:59266959-59266978 None:intergenic 55.0%
TACCACCAACGGAGCTTCAG+GGG + chr4_3:59267144-59267163 None:intergenic 55.0%
CTACCACCAACGGAGCTTCA+GGG + chr4_3:59267145-59267164 None:intergenic 55.0%
AACTGCATTGCCCTGGCAGA+TGG - chr4_3:59267537-59267556 Msa0651760:five_prime_UTR 55.0%
! GAGTGTTGCCGCCGATGTGA+AGG + chr4_3:59264349-59264368 None:intergenic 60.0%
! GTTCGGTGGAAACCCTAGCG+CGG + chr4_3:59264493-59264512 None:intergenic 60.0%
ACGGAATCATCCGCGGCTTC+CGG + chr4_3:59264719-59264738 None:intergenic 60.0%
TGATGGCTCCGGGAAGAGTC+CGG - chr4_3:59264760-59264779 Msa0651760:intron 60.0%
! CCGGAGCCTTATCGGTCTAG+AGG - chr4_3:59264779-59264798 Msa0651760:intron 60.0%
CCTTATTCGGCGTCTCCTGC+TGG + chr4_3:59264970-59264989 None:intergenic 60.0%
CCAGCAGGAGACGCCGAATA+AGG - chr4_3:59264967-59264986 Msa0651760:intron 60.0%
GCTACCACCAACGGAGCTTC+AGG + chr4_3:59267146-59267165 None:intergenic 60.0%
TTGGGTGAAGCCGGAAGCCG+CGG - chr4_3:59264706-59264725 Msa0651760:intron 65.0%
CGACTCCCCTGAAGCTCCGT+TGG - chr4_3:59267136-59267155 Msa0651760:CDS 65.0%
CTCCCCTGAAGCTCCGTTGG+TGG - chr4_3:59267139-59267158 Msa0651760:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 59263871 59267581 59263871 ID=Msa0651760;Name=Msa0651760
chr4_3 mRNA 59263871 59267581 59263871 ID=Msa0651760-mRNA-1;Parent=Msa0651760;Name=Msa0651760-mRNA-1;_AED=0.01;_eAED=0.01;_QI=218|1|1|1|1|1|2|364|627
chr4_3 exon 59263871 59264522 59263871 ID=Msa0651760-mRNA-1:exon:15848;Parent=Msa0651760-mRNA-1
chr4_3 exon 59265768 59267581 59265768 ID=Msa0651760-mRNA-1:exon:15847;Parent=Msa0651760-mRNA-1
chr4_3 five_prime_UTR 59267364 59267581 59267364 ID=Msa0651760-mRNA-1:five_prime_utr;Parent=Msa0651760-mRNA-1
chr4_3 CDS 59265768 59267363 59265768 ID=Msa0651760-mRNA-1:cds;Parent=Msa0651760-mRNA-1
chr4_3 CDS 59264235 59264522 59264235 ID=Msa0651760-mRNA-1:cds;Parent=Msa0651760-mRNA-1
chr4_3 three_prime_UTR 59263871 59264234 59263871 ID=Msa0651760-mRNA-1:three_prime_utr;Parent=Msa0651760-mRNA-1
Gene Sequence

>Msa0651760

ATGGGTACTTCTCAGTCCCGCGAAGACCGTGAATTTTCCGATTCCGACTCAGATTACGACGAACAAGACGATGAACAAGAACAAGAAGATCAAGATCAATACCAAGACGTTCAATCTTCATCCCAATCACATTCCACCAACCTCGATGATGTCGACGCTAAACTCAGTGCCTTAAAACTCAAATACTCTTCTCCTTCACCTTCAAAATCACAATCAGAGACAAAAACACCACTTCCCAAAAACGCTGTCAAGCTTTACCTTCACATCGGCGGCAACACTCCCAACGCTAAATGGATTCTCTCCGACAAACGAACCTCCTACGCCTTCGTCAAAAATGACGACGACGACGAACAAAACGATGTCGCTCAAGGTCAATGGATTCTCAAAGTCGGTTCAAAAATCCGCGCTAGGGTTTCCACCGAACTTCAATTAAAGATGTTTGGTGATCAACGCCGTGTTGATTTCGTCTCCAACGGTGTCTGGGCTCTTAAATTTCCCACCGATGAATCCTACCGGAAATTCGTCACTGAATTTCAAAACTGCACGTTTGAGAATGTTTACGGTTTATCACCGACGGAAGAGAATAAGGTTAAGGTTTACGGTAAGGAGTTTATCGGTTGGGTGAAGCCGGAAGCCGCGGATGATTCCGTTTGGGAAGATGCTGTTTCCGATGATGGCTCCGGGAAGAGTCCGGAGCCTTATCGGTCTAGAGGTGATTTGATGGAGGAGTTTGAAGAGGCTGCAAATGGTGGTATTCAAACCCTAACCCTAGGTGCTCTTGATAACAGTTTTCTTCTCAATGATGCTGGCTTTCAGGTTTACCGGAATTTTGACCGGGGAATTCGAAAGGGGGTTGCTGTGAAATATGGAGGGAATCTCCAGCAGGAGACGCCGAATAAGGCTTTGTTGATGAGGGCAGAGACTAATATGATGCTGATGAGTCCCTTGAATAGTGGAGCGCCACATGCTTCGAAGCTGAACCAGCTTGATATAGAAACAGGGAAGATTGTTTCAGAGTGGAAGTTTGAGAAAGATGGGGCTGATATTACTATGAGGGATATCACAAATGATACTAAAGGGTCACAATTGGATCCTTCGGAGTCGACGTTTTTAGGGTTGGATGATAACAGGCTCTGTCAATGGGATATGCGTGATAGAAAAGGAATTGTTCAGAATATAGCTACAGCTAGTTCGCCAGTGTTGCATTGGAACCAAGGGCATCAATTTTCAAGAGGGACTAATTTTCAATGCTTTGCAACTACAGGAGATGGTTCAATTGTTGTGGGGTCTCTTGATGGGAAGATAAGGTTGTATTCGAATAAATCGATGAGGATGGCGAAGACGGCTTTTCCAGGGCTTGGTTCTCCGATTACAAGCGTTGATGTTACTTTTGATGGAAAGTGGGTGTTGGGTACAACTGATACTTATCTGGTGTTGATTTGTACATTGTTTACTGATAAAGATGGGAAGACAAAGACTGGTTTTGGTGGTCGTATGGGAAACAGGATAGGTGCTCCTAGATTGTTGAAGCTCACTCCTCTGGATTCACATTTGGCTGGAACTACCAATAAGTTTCATGGTGGCCATTTCTCATGGGTCACTGAGAATGGCAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAGTTCAGTGTGATATGGGATTTTCAGCAGGTAAAGAACAGTGCTCACGAATGTTACAGGAATCAACAAGGGCTGAAAAGCTGTTACTGTTACAAGATAGTATTGAAGGACGAGTCAATCATAGAATCACGGTTTATGCATGACAACTATGCTGTTAGCGACTCCCCTGAAGCTCCGTTGGTGGTAGCAACTCCTATGAAAGTTAGCTCTATCAGTATGTCTGGAAGGCGAACCCGTTAA
Protein sequence

>Msa0651760

MGTSQSREDREFSDSDSDYDEQDDEQEQEDQDQYQDVQSSSQSHSTNLDDVDAKLSALKLKYSSPSPSKSQSETKTPLPKNAVKLYLHIGGNTPNAKWILSDKRTSYAFVKNDDDDEQNDVAQGQWILKVGSKIRARVSTELQLKMFGDQRRVDFVSNGVWALKFPTDESYRKFVTEFQNCTFENVYGLSPTEENKVKVYGKEFIGWVKPEAADDSVWEDAVSDDGSGKSPEPYRSRGDLMEEFEEAANGGIQTLTLGALDNSFLLNDAGFQVYRNFDRGIRKGVAVKYGGNLQQETPNKALLMRAETNMMLMSPLNSGAPHASKLNQLDIETGKIVSEWKFEKDGADITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATASSPVLHWNQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSNKSMRMAKTAFPGLGSPITSVDVTFDGKWVLGTTDTYLVLICTLFTDKDGKTKTGFGGRMGNRIGAPRLLKLTPLDSHLAGTTNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQQGLKSCYCYKIVLKDESIIESRFMHDNYAVSDSPEAPLVVATPMKVSSISMSGRRTR*