AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0556210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556210 MtrunA17_Chr4g0044921 97.147 631 14 3 1 631 1 627 0.0 1267
Msa0556210 MtrunA17_Chr3g0133911 63.902 651 199 9 1 629 1 637 0.0 818
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0556210 AT3G19240.1 68.939 660 161 9 1 629 1 647 0.0 881
Msa0556210 AT4G33400.1 65.385 598 188 7 42 629 57 645 0.0 801

Find 198 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAACTGCTGTTTCCTTAATT+TGG 0.104196 4_1:+54288981 None:intergenic
TCTCAATGATGCTGGCTTTC+AGG 0.112027 4_1:-54291510 Msa0556210:CDS
GAAACCTTCAAATGGAAATT+AGG 0.174368 4_1:+54289181 None:intergenic
GCAACACTCCCAACGCTAAA+TGG 0.243481 4_1:-54292042 Msa0556210:CDS
TACAAGTTTGGGTTTGGTTT+TGG 0.251860 4_1:-54289045 Msa0556210:three_prime_UTR
GAGAATAAGGTTAAGGTTTA+CGG 0.259733 4_1:-54291725 Msa0556210:CDS
GGGTACAACTGATACTTATT+TGG 0.269243 4_1:-54290892 Msa0556210:CDS
ATTGATTGATTATGGTATAT+TGG 0.273387 4_1:+54292406 None:intergenic
GAAATTCAGTGACGAATTTC+CGG 0.280068 4_1:+54291792 None:intergenic
CTTTCCTAATTTCCATTTGA+AGG 0.287678 4_1:-54289185 Msa0556210:three_prime_UTR
TTGAAAATTGAAATTTGAAT+TGG 0.295141 4_1:+54292378 None:intergenic
TGCACGTTTGAGAATGTTTA+CGG 0.298124 4_1:-54291764 Msa0556210:CDS
CACTCCTCTGGATTCACATT+TGG 0.308842 4_1:-54290769 Msa0556210:CDS
ATTTCGTCTCCAACGGTGTA+TGG 0.311479 4_1:-54291844 Msa0556210:CDS
TTTGGTTATTACACAAGTTT+GGG 0.311964 4_1:-54289027 Msa0556210:three_prime_UTR
GAATTCCCCGGTCAAAATTC+CGG 0.312404 4_1:+54291483 None:intergenic
TGATTTCGATTTCAATTTCA+TGG 0.324882 4_1:-54292332 Msa0556210:exon
GCTACCACCAACGGAGCTTC+AGG 0.325629 4_1:+54289277 None:intergenic
TCTGTATAATTTCCAAATTA+AGG 0.327646 4_1:-54288993 Msa0556210:three_prime_UTR
TGGTATATTGGGATTTGAAA+TGG 0.332104 4_1:+54292418 None:intergenic
ATGGCCACCATGAAACTTAT+TGG 0.332207 4_1:+54290737 None:intergenic
CCGGCATGAGACGCCGAATA+AGG 0.333099 4_1:-54291423 Msa0556210:CDS
TATCAAGAGCACCTAGGGTT+AGG 0.337247 4_1:+54291543 None:intergenic
ATGCTGGCTTTCAGGTTTAC+CGG 0.345587 4_1:-54291502 Msa0556210:CDS
ATAAGGCTCCGGACTCTTCC+CGG 0.347959 4_1:+54291625 None:intergenic
ACGGAATCATCCGCGGCTTC+CGG 0.354674 4_1:+54291677 None:intergenic
GAACTTCAATTAAAGATGTT+TGG 0.356166 4_1:-54291884 Msa0556210:CDS
ATCACCGACGGAAGAGAATA+AGG 0.356376 4_1:-54291738 Msa0556210:CDS
GGAAGAGTCCGGAGCCTTAT+CGG 0.358877 4_1:-54291622 Msa0556210:CDS
TTGATTGATTATGGTATATT+GGG 0.359456 4_1:+54292407 None:intergenic
GGGAAGACAAAGACTGGTTT+TGG 0.360962 4_1:-54290837 Msa0556210:CDS
TGTGATTACAAGTTTGGGTT+TGG 0.366611 4_1:-54289051 Msa0556210:three_prime_UTR
AACCAGCTTGATATAGAAAC+AGG 0.367263 4_1:-54291323 Msa0556210:CDS
CTCATCAACAAAGCCTTATT+CGG 0.367438 4_1:+54291410 None:intergenic
ATTGTGGTGGGGTCTCTTGA+TGG 0.370162 4_1:-54291026 Msa0556210:CDS
ACAGTGCTCACGAATGTTAC+AGG 0.375660 4_1:-54289405 Msa0556210:CDS
CTGATAGAGCTAACTTTCAT+AGG 0.376837 4_1:+54289250 None:intergenic
ATTGGGATTTGAAATGGAAA+TGG 0.377326 4_1:+54292424 None:intergenic
TGAAAATTGAAATTTGAATT+GGG 0.382648 4_1:+54292379 None:intergenic
TGGGCAAGTTCAGTGTGATA+TGG 0.385495 4_1:-54289447 Msa0556210:CDS
AATATAAACGGAGGTTTAAC+GGG 0.388303 4_1:+54289210 None:intergenic
TTGGTGGTCGTATGGGAAAC+AGG 0.400307 4_1:-54290818 Msa0556210:CDS
ATTGTTGAAGCTCACTCCTC+TGG 0.400548 4_1:-54290781 Msa0556210:CDS
GAGTGGAAGTTTGAGAAAGA+TGG 0.406716 4_1:-54291287 Msa0556210:CDS
GGCGTAGGAGGTTCGTTTGT+CGG 0.407065 4_1:+54292012 None:intergenic
GTTAGCTCTATCAGTATGTC+TGG 0.407557 4_1:-54289241 Msa0556210:CDS
CTCTTGAAAATTGATGCCCT+TGG 0.407659 4_1:+54291090 None:intergenic
GTTTACGGTAAGGAGTTTAT+CGG 0.411185 4_1:-54291710 Msa0556210:CDS
GTCTTTCAGGTCACTGAGAA+TGG 0.411232 4_1:-54289499 Msa0556210:intron
AATGGAAATGGATCAGTTAA+CGG 0.417671 4_1:+54292436 None:intergenic
TGGGTGTGATTGATTGATTA+TGG 0.420393 4_1:+54292398 None:intergenic
AAATATAAACGGAGGTTTAA+CGG 0.422537 4_1:+54289209 None:intergenic
CAAAGAACAGAGAGCGTGTC+AGG 0.426443 4_1:-54292494 Msa0556210:five_prime_UTR
ATCAAGAGCACCTAGGGTTA+GGG 0.431483 4_1:+54291544 None:intergenic
TCGGTCTAGAGGTGATTTGA+TGG 0.434873 4_1:-54291603 Msa0556210:CDS
TTTCAATGCTTTGCGACTAC+AGG 0.435993 4_1:-54291059 Msa0556210:CDS
GTAACATCAACGCTTGTAAT+CGG 0.436282 4_1:+54290936 None:intergenic
GATTGATTACCCATGAGAAA+TGG 0.436454 4_1:+54290718 None:intergenic
AAACATCTTTAATTGAAGTT+CGG 0.437252 4_1:+54291886 None:intergenic
CGGTAAGGAGTTTATCGGTT+GGG 0.438836 4_1:-54291705 Msa0556210:CDS
TGATACTAAAGGGTCACAAT+TGG 0.441061 4_1:-54291234 Msa0556210:CDS
AGAAATTTGAAACCTTCAAA+TGG 0.441794 4_1:+54289173 None:intergenic
AAGCCGCGGATGATTCCGTT+TGG 0.443303 4_1:-54291673 Msa0556210:CDS
ATGTGGCGCTCCACTATTCA+AGG 0.446889 4_1:+54291358 None:intergenic
CGAGGTTGGTGGAATGTGAT+TGG 0.450494 4_1:+54292191 None:intergenic
GAGAGAATCCATTTAGCGTT+GGG 0.450845 4_1:+54292034 None:intergenic
GTCGTAATCTGAGTCGGAAT+CGG 0.451640 4_1:+54292276 None:intergenic
CCTCTGGATTCACATTTGGC+TGG 0.454255 4_1:-54290765 Msa0556210:CDS
AGGGTCACAATTGGATCCTT+CGG 0.457090 4_1:-54291225 Msa0556210:CDS
AGCCGCGGATGATTCCGTTT+GGG 0.459582 4_1:-54291672 Msa0556210:CDS
GGAAAATTCACGGCCTTCGC+GGG 0.464185 4_1:+54292297 None:intergenic
AATATGAAGGTGGGAATCTC+CGG 0.464857 4_1:-54291442 Msa0556210:CDS
GGAACTACCAATAAGTTTCA+TGG 0.465212 4_1:-54290744 Msa0556210:CDS
TTCATGGTGGCCATTTCTCA+TGG 0.466170 4_1:-54290728 Msa0556210:CDS
ATCGATGAGGATGGCGAAGA+CGG 0.468077 4_1:-54290979 Msa0556210:CDS
TGATGGCTCCGGGAAGAGTC+CGG 0.468191 4_1:-54291633 Msa0556210:CDS
GACGGAAGAGAATAAGGTTA+AGG 0.470623 4_1:-54291732 Msa0556210:CDS
GCTGTTTCCGATGATGGCTC+CGG 0.471673 4_1:-54291644 Msa0556210:CDS
ATTAGGAAAGAAAATATAAA+CGG 0.474520 4_1:+54289198 None:intergenic
CATCTTTAATTGAAGTTCGG+TGG 0.474570 4_1:+54291889 None:intergenic
ATGATAACAGGCTCTGTCAA+TGG 0.476193 4_1:-54291181 Msa0556210:CDS
CGGAAAATTCACGGCCTTCG+CGG 0.476321 4_1:+54292296 None:intergenic
TTGTGGTGGGGTCTCTTGAT+GGG 0.477747 4_1:-54291025 Msa0556210:CDS
TAAGGTTAAGGTTTACGGTA+AGG 0.479211 4_1:-54291720 Msa0556210:CDS
TTTGATGGAAAGTGGGTGTT+GGG 0.481016 4_1:-54290912 Msa0556210:CDS
CTGTTACAAGATAGTATTGA+AGG 0.484212 4_1:-54289356 Msa0556210:CDS
GAAGATGCTGTTTCCGATGA+TGG 0.484247 4_1:-54291650 Msa0556210:CDS
TCCCTGTTTCTATATCAAGC+TGG 0.490609 4_1:+54291321 None:intergenic
CTAGTTCGCCGGTGTTGCAT+TGG 0.491553 4_1:-54291115 Msa0556210:CDS
ACGATGTCGCTCAAGGTCAA+TGG 0.492537 4_1:-54291949 Msa0556210:CDS
CTCCCCTGAAGCTCCGTTGG+TGG 0.492757 4_1:-54289281 Msa0556210:CDS
GATATCACAAATGATACTAA+AGG 0.496137 4_1:-54291245 Msa0556210:CDS
CGACTCCCCTGAAGCTCCGT+TGG 0.497070 4_1:-54289284 Msa0556210:CDS
GATTTCGATTTCAATTTCAT+GGG 0.497330 4_1:-54292331 Msa0556210:exon
AGTGGAAGTTTGAGAAAGAT+GGG 0.500651 4_1:-54291286 Msa0556210:CDS
ATATCACAAATGATACTAAA+GGG 0.501069 4_1:-54291244 Msa0556210:CDS
GTTTATCGGTTGGGTGAAGC+CGG 0.501437 4_1:-54291696 Msa0556210:CDS
TGATAACAGGCTCTGTCAAT+GGG 0.502495 4_1:-54291180 Msa0556210:CDS
ACATTGTTTACTGATAAAGA+TGG 0.508772 4_1:-54290858 Msa0556210:CDS
TGGGATATGCGTGATAGAAA+AGG 0.509675 4_1:-54291161 Msa0556210:CDS
GAATAATTTAACCATCTGCC+AGG 0.509754 4_1:+54288872 None:intergenic
AACTGCATTGCCCTGGCAGA+TGG 0.519065 4_1:-54288883 Msa0556210:three_prime_UTR
TTTCGTCTCCAACGGTGTAT+GGG 0.523050 4_1:-54291843 Msa0556210:CDS
CGAATAAGGCTTTGTTGATG+AGG 0.523505 4_1:-54291409 Msa0556210:CDS
GGGCAAGTTCAGTGTGATAT+GGG 0.523866 4_1:-54289446 Msa0556210:CDS
CTACCACCAACGGAGCTTCA+GGG 0.527377 4_1:+54289278 None:intergenic
CTGATGAGTCCCTTGAATAG+TGG 0.528395 4_1:-54291368 Msa0556210:CDS
GGAGAGAATCCATTTAGCGT+TGG 0.530109 4_1:+54292033 None:intergenic
ATGGGGCTGATATTACTATG+AGG 0.530532 4_1:-54291268 Msa0556210:CDS
GGAGTGAGCTTCAACAATCT+AGG 0.532631 4_1:+54290786 None:intergenic
AAATCACCTCTAGACCGATA+AGG 0.534172 4_1:+54291608 None:intergenic
ACGGTAAGGAGTTTATCGGT+TGG 0.534675 4_1:-54291706 Msa0556210:CDS
GAATTTCCGGTAGGATTCAT+CGG 0.534793 4_1:+54291805 None:intergenic
TTTGACCGGGGAATTCGAAA+GGG 0.535186 4_1:-54291476 Msa0556210:CDS
GTCGACATCATCGAGGTTGG+TGG 0.536613 4_1:+54292180 None:intergenic
CTGTTTCCGATGATGGCTCC+GGG 0.537725 4_1:-54291643 Msa0556210:CDS
TTCCGGTAGGATTCATCGGT+GGG 0.539088 4_1:+54291809 None:intergenic
AAAGATGGGAAGACAAAGAC+TGG 0.541574 4_1:-54290843 Msa0556210:CDS
GAGTTTGAAGAGGCTGCAAA+TGG 0.542974 4_1:-54291578 Msa0556210:CDS
GAGGTTGGTGGAATGTGATT+GGG 0.544190 4_1:+54292192 None:intergenic
GTAATCGGAGAACCAAGCCC+TGG 0.550925 4_1:+54290951 None:intergenic
CCTTATTCGGCGTCTCATGC+CGG 0.552703 4_1:+54291423 None:intergenic
CCGGTGTTGCATTGGAACCA+AGG 0.557776 4_1:-54291107 Msa0556210:CDS
CGTGTTGATTTCGTCTCCAA+CGG 0.558067 4_1:-54291851 Msa0556210:CDS
CGCCACCTTGTTGCAACTGT+GGG 0.559509 4_1:-54289466 Msa0556210:CDS
GGGGTAGCTGTGAAATATGA+AGG 0.559703 4_1:-54291455 Msa0556210:CDS
AGGAGATGGTTCAATTGTGG+TGG 0.559861 4_1:-54291039 Msa0556210:CDS
ACTCTTCCCGGAGCCATCAT+CGG 0.560365 4_1:+54291637 None:intergenic
CATTGTTTACTGATAAAGAT+GGG 0.561253 4_1:-54290857 Msa0556210:CDS
GGAGATGGTTCAATTGTGGT+GGG 0.561276 4_1:-54291038 Msa0556210:CDS
ACTGTTATCAAGAGCACCTA+GGG 0.561865 4_1:+54291538 None:intergenic
AGTCGGAATCGGAAAATTCA+CGG 0.562438 4_1:+54292287 None:intergenic
TCATGGTGGCCATTTCTCAT+GGG 0.562447 4_1:-54290727 Msa0556210:intron
TGCTTTGCGACTACAGGAGA+TGG 0.564028 4_1:-54291053 Msa0556210:CDS
GGTCGTATGGGAAACAGGAT+AGG 0.565383 4_1:-54290813 Msa0556210:CDS
TTGGGTGAAGCCGGAAGCCG+CGG 0.568941 4_1:-54291687 Msa0556210:CDS
CCTTGGTTCCAATGCAACAC+CGG 0.569871 4_1:+54291107 None:intergenic
AGCGTCGACATCATCGAGGT+TGG 0.570308 4_1:+54292177 None:intergenic
GGTCTCTTGATGGGAAGATA+AGG 0.572601 4_1:-54291016 Msa0556210:CDS
CGGTGTTGCATTGGAACCAA+GGG 0.572776 4_1:-54291106 Msa0556210:CDS
GAACAAAACGATGTCGCTCA+AGG 0.572778 4_1:-54291956 Msa0556210:CDS
AAAAGAAAACTGCATTGCCC+TGG 0.573868 4_1:-54288890 Msa0556210:three_prime_UTR
CCTCTAGACCGATAAGGCTC+CGG 0.574522 4_1:+54291614 None:intergenic
ATAGGAGTTGCTACCACCAA+CGG 0.574538 4_1:+54289268 None:intergenic
TTCCCACCGATGAATCCTAC+CGG 0.575350 4_1:-54291811 Msa0556210:CDS
TAGCTGTGAAATATGAAGGT+GGG 0.583398 4_1:-54291451 Msa0556210:CDS
ACGCCACCTTGTTGCAACTG+TGG 0.586989 4_1:-54289467 Msa0556210:CDS
GGAAACAGCATCTTCCCAAA+CGG 0.591198 4_1:+54291658 None:intergenic
GGTATTCAAACCCTAACCCT+AGG 0.591767 4_1:-54291554 Msa0556210:CDS
GAATAAGGCTTTGTTGATGA+GGG 0.593377 4_1:-54291408 Msa0556210:CDS
GAATGTTACAGGAATCAACT+AGG 0.594574 4_1:-54289394 Msa0556210:CDS
TTTAAGAGCCCATACACCGT+TGG 0.594632 4_1:+54291835 None:intergenic
TACCACCAACGGAGCTTCAG+GGG 0.595085 4_1:+54289279 None:intergenic
TTGTTCGTCGTAATCTGAGT+CGG 0.595936 4_1:+54292270 None:intergenic
AGGAAAGAAAATATAAACGG+AGG 0.596464 4_1:+54289201 None:intergenic
TGGGGCTGATATTACTATGA+GGG 0.598346 4_1:-54291267 Msa0556210:CDS
TACAGGAGATGGTTCAATTG+TGG 0.608660 4_1:-54291042 Msa0556210:CDS
GCTCTATCAGTATGTCTGGA+AGG 0.609197 4_1:-54289237 Msa0556210:CDS
TTAACCTTATTCTCTTCCGT+CGG 0.609586 4_1:+54291734 None:intergenic
TTGACCGGGGAATTCGAAAG+GGG 0.609777 4_1:-54291475 Msa0556210:CDS
TATAGCTACAGCTAGTTCGC+CGG 0.611370 4_1:-54291126 Msa0556210:CDS
TTTGAAGAGGCTGCAAATGG+TGG 0.611463 4_1:-54291575 Msa0556210:CDS
TAAGAAAGAAAAGAGATACA+TGG 0.612272 4_1:+54289086 None:intergenic
CCGGAGCCTTATCGGTCTAG+AGG 0.612763 4_1:-54291614 Msa0556210:CDS
TGGTTCAGCTTCGAAGCATG+TGG 0.615986 4_1:+54291341 None:intergenic
GGGATGAAGATTGAACGTCT+TGG 0.616486 4_1:+54292212 None:intergenic
TTTCCGGTAGGATTCATCGG+TGG 0.620316 4_1:+54291808 None:intergenic
CAGGGAAGATTGTTTCAGAG+TGG 0.620928 4_1:-54291304 Msa0556210:CDS
TTCGAATAAATCGATGAGGA+TGG 0.623115 4_1:-54290988 Msa0556210:CDS
GAGTGTTGCCGCCGATGTGA+AGG 0.626265 4_1:+54292056 None:intergenic
AAGCTTTACCTTCACATCGG+CGG 0.627540 4_1:-54292064 Msa0556210:CDS
GGTCAATGGATTCTCAAAGT+CGG 0.637822 4_1:-54291935 Msa0556210:CDS
AACTGTTATCAAGAGCACCT+AGG 0.637908 4_1:+54291537 None:intergenic
TTTGATGGAGGAGTTTGAAG+AGG 0.645411 4_1:-54291588 Msa0556210:CDS
AATAATTTAACCATCTGCCA+GGG 0.646364 4_1:+54288873 None:intergenic
TGTGGCGCTCCACTATTCAA+GGG 0.647458 4_1:+54291359 None:intergenic
TTCAGTGACGAATTTCCGGT+AGG 0.648527 4_1:+54291796 None:intergenic
AGCAGAAAAGCTGTTAAATG+CGG 0.648820 4_1:+54288946 None:intergenic
GTAGCTGTGAAATATGAAGG+TGG 0.649176 4_1:-54291452 Msa0556210:CDS
AATGTTACAGGAATCAACTA+GGG 0.649524 4_1:-54289393 Msa0556210:CDS
ACGAGTCAATCATAGAATCA+CGG 0.650778 4_1:-54289333 Msa0556210:CDS
ACTTGCCCACAGTTGCAACA+AGG 0.657504 4_1:+54289461 None:intergenic
GTCTAGAGGTGATTTGATGG+AGG 0.661438 4_1:-54291600 Msa0556210:CDS
TTCCCAAACGGAATCATCCG+CGG 0.661974 4_1:+54291670 None:intergenic
GGTACTTCTCAATCCCGCGA+AGG 0.669085 4_1:-54292310 Msa0556210:CDS
TGTTTACGGTTTATCACCGA+CGG 0.671523 4_1:-54291750 Msa0556210:CDS
ACCAGCTTGATATAGAAACA+GGG 0.678641 4_1:-54291322 Msa0556210:CDS
TGACCGGGGAATTCGAAAGG+GGG 0.680507 4_1:-54291474 Msa0556210:CDS
GTCAAGCTTTACCTTCACAT+CGG 0.680830 4_1:-54292067 Msa0556210:CDS
TGTATTCGAATAAATCGATG+AGG 0.688375 4_1:-54290992 Msa0556210:CDS
GTGGAAGTTTGAGAAAGATG+GGG 0.691794 4_1:-54291285 Msa0556210:CDS
CCAGCCAAATGTGAATCCAG+AGG 0.694133 4_1:+54290765 None:intergenic
GAGATGGTTCAATTGTGGTG+GGG 0.703282 4_1:-54291037 Msa0556210:CDS
TGCCCACAGTTGCAACAAGG+TGG 0.704608 4_1:+54289464 None:intergenic
CGTTGGAGACGAAATCAACA+CGG 0.722626 4_1:+54291852 None:intergenic
GTTCGGTGGAAACCCTAGCG+CGG 0.733834 4_1:+54291903 None:intergenic
ACTACCAATAAGTTTCATGG+TGG 0.735152 4_1:-54290741 Msa0556210:CDS
GTTTAGCGTCGACATCATCG+AGG 0.758315 4_1:+54292173 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAATATGAATATGAAT+GGG - chr4_1:54290765-54290784 Msa0556210:CDS 10.0%
!! TGAAAATTGAAATTTGAATT+GGG + chr4_1:54289005-54289024 None:intergenic 15.0%
!! TTGAAAATTGAAATTTGAAT+TGG + chr4_1:54289006-54289025 None:intergenic 15.0%
!! CATATAAATATGAATATGAA+TGG - chr4_1:54290764-54290783 Msa0556210:CDS 15.0%
!! CTATTTAAAAAAATCGTAAA+AGG - chr4_1:54291447-54291466 Msa0556210:CDS 15.0%
!! ATTAGGAAAGAAAATATAAA+CGG + chr4_1:54292186-54292205 None:intergenic 15.0%
!! TTGATTGATTATGGTATATT+GGG + chr4_1:54288977-54288996 None:intergenic 20.0%
!! ATTGATTGATTATGGTATAT+TGG + chr4_1:54288978-54288997 None:intergenic 20.0%
!! AAACATCTTTAATTGAAGTT+CGG + chr4_1:54289498-54289517 None:intergenic 20.0%
!! ATATCACAAATGATACTAAA+GGG - chr4_1:54290137-54290156 Msa0556210:intron 20.0%
!!! ATTAATTCTCTTGCTATTAT+AGG - chr4_1:54291131-54291150 Msa0556210:CDS 20.0%
!! ATTAAATAGCATAAGTAATG+AGG - chr4_1:54291423-54291442 Msa0556210:CDS 20.0%
!! TTAAATAGCATAAGTAATGA+GGG - chr4_1:54291424-54291443 Msa0556210:CDS 20.0%
!! AATTTCACTTAATGAATTGA+TGG + chr4_1:54291555-54291574 None:intergenic 20.0%
!! GATAATGTAATCCATAAATT+TGG - chr4_1:54291577-54291596 Msa0556210:CDS 20.0%
!!! TTATTTTGTGATTACAAGTT+TGG - chr4_1:54292324-54292343 Msa0556210:exon 20.0%
!!! TATTTTGTGATTACAAGTTT+GGG - chr4_1:54292325-54292344 Msa0556210:exon 20.0%
!! TCTGTATAATTTCCAAATTA+AGG - chr4_1:54292388-54292407 Msa0556210:five_prime_UTR 20.0%
! TGATTTCGATTTCAATTTCA+TGG - chr4_1:54289049-54289068 Msa0556210:three_prime_UTR 25.0%
! GATTTCGATTTCAATTTCAT+GGG - chr4_1:54289050-54289069 Msa0556210:three_prime_UTR 25.0%
!!! AGAAGAGTATTTGAGTTTTA+AGG + chr4_1:54289240-54289259 None:intergenic 25.0%
! GAACTTCAATTAAAGATGTT+TGG - chr4_1:54289497-54289516 Msa0556210:intron 25.0%
! GATATCACAAATGATACTAA+AGG - chr4_1:54290136-54290155 Msa0556210:intron 25.0%
! ACATTGTTTACTGATAAAGA+TGG - chr4_1:54290523-54290542 Msa0556210:intron 25.0%
! CATTGTTTACTGATAAAGAT+GGG - chr4_1:54290524-54290543 Msa0556210:intron 25.0%
! TCAAAAACATTGTCAAAAAG+CGG + chr4_1:54290943-54290962 None:intergenic 25.0%
! TGAATTAAATAGCATATCAC+AGG - chr4_1:54290960-54290979 Msa0556210:CDS 25.0%
! TTTGACATTAATACCATCAA+TGG - chr4_1:54291063-54291082 Msa0556210:CDS 25.0%
! ACCACTTAAAATTTCATTCT+AGG - chr4_1:54291088-54291107 Msa0556210:CDS 25.0%
!! ACCTAGAATGAAATTTTAAG+TGG + chr4_1:54291092-54291111 None:intergenic 25.0%
!! TTCTAGGTTTTCTTTTGTAA+AGG - chr4_1:54291104-54291123 Msa0556210:CDS 25.0%
!! TCTAGGTTTTCTTTTGTAAA+GGG - chr4_1:54291105-54291124 Msa0556210:CDS 25.0%
!! ACTTTCTGTTACTTATGTTT+GGG - chr4_1:54291261-54291280 Msa0556210:CDS 25.0%
! AATGATATCAGCCAAATTTA+TGG + chr4_1:54291591-54291610 None:intergenic 25.0%
!!! AAATTGTTATTTGTTCACAG+TGG - chr4_1:54291660-54291679 Msa0556210:CDS 25.0%
! TGATCAGTGAGTTATAAATA+TGG - chr4_1:54291726-54291745 Msa0556210:CDS 25.0%
! ATGGAATAAACAAGCTTAAA+AGG + chr4_1:54291756-54291775 None:intergenic 25.0%
!! GGAATGTTAATTTAAAGTGA+TGG - chr4_1:54291793-54291812 Msa0556210:CDS 25.0%
!!! TCATTTGTTTTTTGTCTTTC+AGG - chr4_1:54291869-54291888 Msa0556210:CDS 25.0%
! AAATATAAACGGAGGTTTAA+CGG + chr4_1:54292175-54292194 None:intergenic 25.0%
!! AGAAATTTGAAACCTTCAAA+TGG + chr4_1:54292211-54292230 None:intergenic 25.0%
!!! TAGTTTGTGCAGAAAATTTT+AGG - chr4_1:54292269-54292288 Msa0556210:CDS 25.0%
! TAAGAAAGAAAAGAGATACA+TGG + chr4_1:54292298-54292317 None:intergenic 25.0%
!!! TTTTGGTTATTACACAAGTT+TGG - chr4_1:54292353-54292372 Msa0556210:five_prime_UTR 25.0%
! TTTGGTTATTACACAAGTTT+GGG - chr4_1:54292354-54292373 Msa0556210:five_prime_UTR 25.0%
AATGGAAATGGATCAGTTAA+CGG + chr4_1:54288948-54288967 None:intergenic 30.0%
! ATTGGGATTTGAAATGGAAA+TGG + chr4_1:54288960-54288979 None:intergenic 30.0%
TGGTATATTGGGATTTGAAA+TGG + chr4_1:54288966-54288985 None:intergenic 30.0%
GAGAATAAGGTTAAGGTTTA+CGG - chr4_1:54289656-54289675 Msa0556210:intron 30.0%
TGTATTCGAATAAATCGATG+AGG - chr4_1:54290389-54290408 Msa0556210:intron 30.0%
!!! ATGTTACTTTTGATGGAAAG+TGG - chr4_1:54290461-54290480 Msa0556210:intron 30.0%
!!! TGTTACTTTTGATGGAAAGT+GGG - chr4_1:54290462-54290481 Msa0556210:intron 30.0%
ACATGACAATGCAAAATAGA+AGG + chr4_1:54290718-54290737 None:intergenic 30.0%
CAATCAGTATTGTTAAACAG+CGG + chr4_1:54291021-54291040 None:intergenic 30.0%
!! TTTTAAGTGGTAACCATTGA+TGG + chr4_1:54291079-54291098 None:intergenic 30.0%
! CTAGGTTTTCTTTTGTAAAG+GGG - chr4_1:54291106-54291125 Msa0556210:CDS 30.0%
!! TTATTTGTTGTTACCATGTG+CGG - chr4_1:54291155-54291174 Msa0556210:CDS 30.0%
! CACTTTCTGTTACTTATGTT+TGG - chr4_1:54291260-54291279 Msa0556210:CDS 30.0%
AATGCTGCAAGATGTATAAA+TGG - chr4_1:54291376-54291395 Msa0556210:CDS 30.0%
AAAGGATGAAAAGCAAGTAT+AGG - chr4_1:54291465-54291484 Msa0556210:CDS 30.0%
! AAATGATTAATACTTGCTGC+GGG + chr4_1:54291855-54291874 None:intergenic 30.0%
! CAAATGATTAATACTTGCTG+CGG + chr4_1:54291856-54291875 None:intergenic 30.0%
AATGTTACAGGAATCAACTA+GGG - chr4_1:54291988-54292007 Msa0556210:CDS 30.0%
! CTGTTACAAGATAGTATTGA+AGG - chr4_1:54292025-54292044 Msa0556210:CDS 30.0%
AATATAAACGGAGGTTTAAC+GGG + chr4_1:54292174-54292193 None:intergenic 30.0%
AGGAAAGAAAATATAAACGG+AGG + chr4_1:54292183-54292202 None:intergenic 30.0%
CTTTCCTAATTTCCATTTGA+AGG - chr4_1:54292196-54292215 Msa0556210:CDS 30.0%
GAAACCTTCAAATGGAAATT+AGG + chr4_1:54292203-54292222 None:intergenic 30.0%
! ATCTCTTTTCTTTCTTACAC+TGG - chr4_1:54292301-54292320 Msa0556210:CDS 30.0%
!! AAACTGCTGTTTCCTTAATT+TGG + chr4_1:54292403-54292422 None:intergenic 30.0%
AATAATTTAACCATCTGCCA+GGG + chr4_1:54292511-54292530 None:intergenic 30.0%
!! CGGTTTTATAGCGTTAATGT+CGG + chr4_1:54288928-54288947 None:intergenic 35.0%
TGGGTGTGATTGATTGATTA+TGG + chr4_1:54288986-54289005 None:intergenic 35.0%
!! GATTGTGATTTTGAAGGTGA+AGG + chr4_1:54289263-54289282 None:intergenic 35.0%
! GTCTCTGATTGTGATTTTGA+AGG + chr4_1:54289269-54289288 None:intergenic 35.0%
! TAAAGCTTGACAGCGTTTTT+GGG + chr4_1:54289305-54289324 None:intergenic 35.0%
CATCTTTAATTGAAGTTCGG+TGG + chr4_1:54289495-54289514 None:intergenic 35.0%
GAAATTCAGTGACGAATTTC+CGG + chr4_1:54289592-54289611 None:intergenic 35.0%
TGCACGTTTGAGAATGTTTA+CGG - chr4_1:54289617-54289636 Msa0556210:intron 35.0%
TTAACCTTATTCTCTTCCGT+CGG + chr4_1:54289650-54289669 None:intergenic 35.0%
TAAGGTTAAGGTTTACGGTA+AGG - chr4_1:54289661-54289680 Msa0556210:intron 35.0%
GTTTACGGTAAGGAGTTTAT+CGG - chr4_1:54289671-54289690 Msa0556210:intron 35.0%
! AGTTTTCTTCTCAATGATGC+TGG - chr4_1:54289863-54289882 Msa0556210:intron 35.0%
TAGCTGTGAAATATGAAGGT+GGG - chr4_1:54289930-54289949 Msa0556210:intron 35.0%
!! CTCATCAACAAAGCCTTATT+CGG + chr4_1:54289974-54289993 None:intergenic 35.0%
!! GAATAAGGCTTTGTTGATGA+GGG - chr4_1:54289973-54289992 Msa0556210:intron 35.0%
AACCAGCTTGATATAGAAAC+AGG - chr4_1:54290058-54290077 Msa0556210:intron 35.0%
ACCAGCTTGATATAGAAACA+GGG - chr4_1:54290059-54290078 Msa0556210:intron 35.0%
AGTGGAAGTTTGAGAAAGAT+GGG - chr4_1:54290095-54290114 Msa0556210:intron 35.0%
TGATACTAAAGGGTCACAAT+TGG - chr4_1:54290147-54290166 Msa0556210:intron 35.0%
!!! TTTTAGGGTTGGATGATAAC+AGG - chr4_1:54290188-54290207 Msa0556210:intron 35.0%
!!! AAGGGCATCAATTTTCAAGA+GGG - chr4_1:54290293-54290312 Msa0556210:intron 35.0%
TTCGAATAAATCGATGAGGA+TGG - chr4_1:54290393-54290412 Msa0556210:intron 35.0%
GTAACATCAACGCTTGTAAT+CGG + chr4_1:54290448-54290467 None:intergenic 35.0%
!!! AGCGTTGATGTTACTTTTGA+TGG - chr4_1:54290454-54290473 Msa0556210:intron 35.0%
GGGTACAACTGATACTTATT+TGG - chr4_1:54290489-54290508 Msa0556210:intron 35.0%
GGAACTACCAATAAGTTTCA+TGG - chr4_1:54290637-54290656 Msa0556210:intron 35.0%
ACTACCAATAAGTTTCATGG+TGG - chr4_1:54290640-54290659 Msa0556210:intron 35.0%
GATTGATTACCCATGAGAAA+TGG + chr4_1:54290666-54290685 None:intergenic 35.0%
CACACAATGTTGTCAATTGT+CGG - chr4_1:54290863-54290882 Msa0556210:CDS 35.0%
TTGTCAATTGTCGGAAATAG+CGG - chr4_1:54290872-54290891 Msa0556210:CDS 35.0%
GGTATAGAACTATTGCATAG+CGG + chr4_1:54290910-54290929 None:intergenic 35.0%
TAGCATATCACAGGAAATAG+CGG - chr4_1:54290969-54290988 Msa0556210:CDS 35.0%
!! GCTTTTAAACAGAAAGCGTA+TGG + chr4_1:54291287-54291306 None:intergenic 35.0%
ACGCTTTCTGTTTAAAAGCT+AGG - chr4_1:54291288-54291307 Msa0556210:CDS 35.0%
TGATCCATATAATAGTGCGA+TGG - chr4_1:54291330-54291349 Msa0556210:CDS 35.0%
TTCACCATCGCACTATTATA+TGG + chr4_1:54291337-54291356 None:intergenic 35.0%
! TCACCCATCATTTTCAGAAT+CGG + chr4_1:54291402-54291421 None:intergenic 35.0%
AACGTCTTGTACTCTACTAA+TGG + chr4_1:54291495-54291514 None:intergenic 35.0%
GAATGTTACAGGAATCAACT+AGG - chr4_1:54291987-54292006 Msa0556210:CDS 35.0%
ACGAGTCAATCATAGAATCA+CGG - chr4_1:54292048-54292067 Msa0556210:CDS 35.0%
CTGATAGAGCTAACTTTCAT+AGG + chr4_1:54292134-54292153 None:intergenic 35.0%
! TGTGATTACAAGTTTGGGTT+TGG - chr4_1:54292330-54292349 Msa0556210:exon 35.0%
!! TACAAGTTTGGGTTTGGTTT+TGG - chr4_1:54292336-54292355 Msa0556210:five_prime_UTR 35.0%
AGCAGAAAAGCTGTTAAATG+CGG + chr4_1:54292438-54292457 None:intergenic 35.0%
GAATAATTTAACCATCTGCC+AGG + chr4_1:54292512-54292531 None:intergenic 35.0%
AGTCGGAATCGGAAAATTCA+CGG + chr4_1:54289097-54289116 None:intergenic 40.0%
TTGTTCGTCGTAATCTGAGT+CGG + chr4_1:54289114-54289133 None:intergenic 40.0%
! GTAAAGCTTGACAGCGTTTT+TGG + chr4_1:54289306-54289325 None:intergenic 40.0%
GTCAAGCTTTACCTTCACAT+CGG - chr4_1:54289314-54289333 Msa0556210:CDS 40.0%
GAGAGAATCCATTTAGCGTT+GGG + chr4_1:54289350-54289369 None:intergenic 40.0%
!!! GTCTTCGTCATTTTTGACGA+AGG + chr4_1:54289393-54289412 None:intergenic 40.0%
! GGTCAATGGATTCTCAAAGT+CGG - chr4_1:54289446-54289465 Msa0556210:CDS 40.0%
GAATTTCCGGTAGGATTCAT+CGG + chr4_1:54289579-54289598 None:intergenic 40.0%
TGTTTACGGTTTATCACCGA+CGG - chr4_1:54289631-54289650 Msa0556210:intron 40.0%
GACGGAAGAGAATAAGGTTA+AGG - chr4_1:54289649-54289668 Msa0556210:intron 40.0%
AAATCACCTCTAGACCGATA+AGG + chr4_1:54289776-54289795 None:intergenic 40.0%
TTTGATGGAGGAGTTTGAAG+AGG - chr4_1:54289793-54289812 Msa0556210:intron 40.0%
!! ACTGTTATCAAGAGCACCTA+GGG + chr4_1:54289846-54289865 None:intergenic 40.0%
!! AACTGTTATCAAGAGCACCT+AGG + chr4_1:54289847-54289866 None:intergenic 40.0%
!! AGGTTTACCGGAATTTTGAC+CGG - chr4_1:54289891-54289910 Msa0556210:intron 40.0%
GTAGCTGTGAAATATGAAGG+TGG - chr4_1:54289929-54289948 Msa0556210:intron 40.0%
AATATGAAGGTGGGAATCTC+CGG - chr4_1:54289939-54289958 Msa0556210:intron 40.0%
!! CGAATAAGGCTTTGTTGATG+AGG - chr4_1:54289972-54289991 Msa0556210:intron 40.0%
!! TCCCTGTTTCTATATCAAGC+TGG + chr4_1:54290063-54290082 None:intergenic 40.0%
GAGTGGAAGTTTGAGAAAGA+TGG - chr4_1:54290094-54290113 Msa0556210:intron 40.0%
GTGGAAGTTTGAGAAAGATG+GGG - chr4_1:54290096-54290115 Msa0556210:intron 40.0%
ATGGGGCTGATATTACTATG+AGG - chr4_1:54290113-54290132 Msa0556210:intron 40.0%
TGGGGCTGATATTACTATGA+GGG - chr4_1:54290114-54290133 Msa0556210:intron 40.0%
ATGATAACAGGCTCTGTCAA+TGG - chr4_1:54290200-54290219 Msa0556210:intron 40.0%
TGATAACAGGCTCTGTCAAT+GGG - chr4_1:54290201-54290220 Msa0556210:intron 40.0%
TGGGATATGCGTGATAGAAA+AGG - chr4_1:54290220-54290239 Msa0556210:intron 40.0%
CTCTTGAAAATTGATGCCCT+TGG + chr4_1:54290294-54290313 None:intergenic 40.0%
!!! CAAGGGCATCAATTTTCAAG+AGG - chr4_1:54290292-54290311 Msa0556210:intron 40.0%
TTTCAATGCTTTGCGACTAC+AGG - chr4_1:54290322-54290341 Msa0556210:intron 40.0%
TACAGGAGATGGTTCAATTG+TGG - chr4_1:54290339-54290358 Msa0556210:intron 40.0%
! TTTTGATGGAAAGTGGGTGT+TGG - chr4_1:54290468-54290487 Msa0556210:intron 40.0%
TTTGATGGAAAGTGGGTGTT+GGG - chr4_1:54290469-54290488 Msa0556210:intron 40.0%
AAAGATGGGAAGACAAAGAC+TGG - chr4_1:54290538-54290557 Msa0556210:intron 40.0%
!!! AAGACAAAGACTGGTTTTGG+TGG - chr4_1:54290547-54290566 Msa0556210:intron 40.0%
ATGGCCACCATGAAACTTAT+TGG + chr4_1:54290647-54290666 None:intergenic 40.0%
GAATGTGTATGAGTGTGTGT+TGG + chr4_1:54290822-54290841 None:intergenic 40.0%
CAATTGACAACATTGTGTGC+AGG + chr4_1:54290862-54290881 None:intergenic 40.0%
TCAAAAAGCGGTTATAGCAC+AGG + chr4_1:54290931-54290950 None:intergenic 40.0%
!! ACTAGGGTGTTATTGGTACA+TGG - chr4_1:54291180-54291199 Msa0556210:CDS 40.0%
! TGTCTGGTTTAGCAATAGTG+TGG - chr4_1:54291216-54291235 Msa0556210:CDS 40.0%
! GTCTGGTTTAGCAATAGTGT+GGG - chr4_1:54291217-54291236 Msa0556210:CDS 40.0%
! TCTGGTTTAGCAATAGTGTG+GGG - chr4_1:54291218-54291237 Msa0556210:CDS 40.0%
GTGCGATGGTGAAATTATCA+TGG - chr4_1:54291344-54291363 Msa0556210:CDS 40.0%
! ATGGCCGATTCTGAAAATGA+TGG - chr4_1:54291395-54291414 Msa0556210:CDS 40.0%
! TGGCCGATTCTGAAAATGAT+GGG - chr4_1:54291396-54291415 Msa0556210:CDS 40.0%
!!! GAGTACAAGACGTTTTTAGC+AGG - chr4_1:54291501-54291520 Msa0556210:CDS 40.0%
TTAATAGACGACATGACTGC+AGG - chr4_1:54291636-54291655 Msa0556210:CDS 40.0%
! TGTGATATGGGATTTTCAGC+AGG - chr4_1:54291947-54291966 Msa0556210:CDS 40.0%
!! GTTAGCTCTATCAGTATGTC+TGG - chr4_1:54292140-54292159 Msa0556210:CDS 40.0%
AAAAGAAAACTGCATTGCCC+TGG - chr4_1:54292491-54292510 Msa0556210:five_prime_UTR 40.0%
GTCGTAATCTGAGTCGGAAT+CGG + chr4_1:54289108-54289127 None:intergenic 45.0%
GGGATGAAGATTGAACGTCT+TGG + chr4_1:54289172-54289191 None:intergenic 45.0%
!! GAGGTTGGTGGAATGTGATT+GGG + chr4_1:54289192-54289211 None:intergenic 45.0%
!! TTGACAGCGTTTTTGGGAAG+TGG + chr4_1:54289299-54289318 None:intergenic 45.0%
AAGCTTTACCTTCACATCGG+CGG - chr4_1:54289317-54289336 Msa0556210:CDS 45.0%
GGAGAGAATCCATTTAGCGT+TGG + chr4_1:54289351-54289370 None:intergenic 45.0%
!! ATTTTTGACGAAGGCGTAGG+AGG + chr4_1:54289384-54289403 None:intergenic 45.0%
!!! GTCATTTTTGACGAAGGCGT+AGG + chr4_1:54289387-54289406 None:intergenic 45.0%
GAACAAAACGATGTCGCTCA+AGG - chr4_1:54289425-54289444 Msa0556210:CDS 45.0%
CGTTGGAGACGAAATCAACA+CGG + chr4_1:54289532-54289551 None:intergenic 45.0%
!! CGTGTTGATTTCGTCTCCAA+CGG - chr4_1:54289530-54289549 Msa0556210:intron 45.0%
ATTTCGTCTCCAACGGTGTA+TGG - chr4_1:54289537-54289556 Msa0556210:intron 45.0%
TTTCGTCTCCAACGGTGTAT+GGG - chr4_1:54289538-54289557 Msa0556210:intron 45.0%
TTTAAGAGCCCATACACCGT+TGG + chr4_1:54289549-54289568 None:intergenic 45.0%
TTCAGTGACGAATTTCCGGT+AGG + chr4_1:54289588-54289607 None:intergenic 45.0%
ATCACCGACGGAAGAGAATA+AGG - chr4_1:54289643-54289662 Msa0556210:intron 45.0%
ACGGTAAGGAGTTTATCGGT+TGG - chr4_1:54289675-54289694 Msa0556210:intron 45.0%
! CGGTAAGGAGTTTATCGGTT+GGG - chr4_1:54289676-54289695 Msa0556210:intron 45.0%
GGAAACAGCATCTTCCCAAA+CGG + chr4_1:54289726-54289745 None:intergenic 45.0%
!! GAAGATGCTGTTTCCGATGA+TGG - chr4_1:54289731-54289750 Msa0556210:intron 45.0%
TCGGTCTAGAGGTGATTTGA+TGG - chr4_1:54289778-54289797 Msa0556210:intron 45.0%
GTCTAGAGGTGATTTGATGG+AGG - chr4_1:54289781-54289800 Msa0556210:intron 45.0%
GAGTTTGAAGAGGCTGCAAA+TGG - chr4_1:54289803-54289822 Msa0556210:intron 45.0%
TTTGAAGAGGCTGCAAATGG+TGG - chr4_1:54289806-54289825 Msa0556210:intron 45.0%
GGTATTCAAACCCTAACCCT+AGG - chr4_1:54289827-54289846 Msa0556210:intron 45.0%
!! ATCAAGAGCACCTAGGGTTA+GGG + chr4_1:54289840-54289859 None:intergenic 45.0%
!! TATCAAGAGCACCTAGGGTT+AGG + chr4_1:54289841-54289860 None:intergenic 45.0%
!! TCTCAATGATGCTGGCTTTC+AGG - chr4_1:54289871-54289890 Msa0556210:intron 45.0%
!! ATGCTGGCTTTCAGGTTTAC+CGG - chr4_1:54289879-54289898 Msa0556210:intron 45.0%
!! GGTTTACCGGAATTTTGACC+GGG - chr4_1:54289892-54289911 Msa0556210:intron 45.0%
!! GTTTACCGGAATTTTGACCG+GGG - chr4_1:54289893-54289912 Msa0556210:intron 45.0%
GAATTCCCCGGTCAAAATTC+CGG + chr4_1:54289901-54289920 None:intergenic 45.0%
! TTTTGACCGGGGAATTCGAA+AGG - chr4_1:54289904-54289923 Msa0556210:intron 45.0%
TTTGACCGGGGAATTCGAAA+GGG - chr4_1:54289905-54289924 Msa0556210:intron 45.0%
GGGGTAGCTGTGAAATATGA+AGG - chr4_1:54289926-54289945 Msa0556210:intron 45.0%
CTGATGAGTCCCTTGAATAG+TGG - chr4_1:54290013-54290032 Msa0556210:intron 45.0%
CAGGGAAGATTGTTTCAGAG+TGG - chr4_1:54290077-54290096 Msa0556210:intron 45.0%
AGGGTCACAATTGGATCCTT+CGG - chr4_1:54290156-54290175 Msa0556210:intron 45.0%
! CTTCGGAGTCGACGTTTTTA+GGG - chr4_1:54290173-54290192 Msa0556210:intron 45.0%
TATAGCTACAGCTAGTTCGC+CGG - chr4_1:54290255-54290274 Msa0556210:intron 45.0%
AGGAGATGGTTCAATTGTGG+TGG - chr4_1:54290342-54290361 Msa0556210:intron 45.0%
GGAGATGGTTCAATTGTGGT+GGG - chr4_1:54290343-54290362 Msa0556210:intron 45.0%
GAGATGGTTCAATTGTGGTG+GGG - chr4_1:54290344-54290363 Msa0556210:intron 45.0%
GGTCTCTTGATGGGAAGATA+AGG - chr4_1:54290365-54290384 Msa0556210:intron 45.0%
!!! GGGAAGACAAAGACTGGTTT+TGG - chr4_1:54290544-54290563 Msa0556210:intron 45.0%
!!! ACTGGTTTTGGTGGTCGTAT+GGG - chr4_1:54290556-54290575 Msa0556210:intron 45.0%
GGAGTGAGCTTCAACAATCT+AGG + chr4_1:54290598-54290617 None:intergenic 45.0%
ATTGTTGAAGCTCACTCCTC+TGG - chr4_1:54290600-54290619 Msa0556210:intron 45.0%
CACTCCTCTGGATTCACATT+TGG - chr4_1:54290612-54290631 Msa0556210:intron 45.0%
TTCATGGTGGCCATTTCTCA+TGG - chr4_1:54290653-54290672 Msa0556210:intron 45.0%
TCATGGTGGCCATTTCTCAT+GGG - chr4_1:54290654-54290673 Msa0556210:intron 45.0%
TGTTACCATGTGCGGAAACT+AGG - chr4_1:54291163-54291182 Msa0556210:CDS 45.0%
GTTACCATGTGCGGAAACTA+GGG - chr4_1:54291164-54291183 Msa0556210:CDS 45.0%
! TGCGGAAACTAGGGTGTTAT+TGG - chr4_1:54291173-54291192 Msa0556210:CDS 45.0%
!! GGGTGTTATTGGTACATGGA+TGG - chr4_1:54291184-54291203 Msa0556210:CDS 45.0%
CTGGTTTAGCAATAGTGTGG+GGG - chr4_1:54291219-54291238 Msa0556210:CDS 45.0%
! CAGAAAGTGTATGACCCACT+AGG + chr4_1:54291249-54291268 None:intergenic 45.0%
! GTCTTTCAGGTCACTGAGAA+TGG - chr4_1:54291882-54291901 Msa0556210:CDS 45.0%
TGGGCAAGTTCAGTGTGATA+TGG - chr4_1:54291934-54291953 Msa0556210:CDS 45.0%
GGGCAAGTTCAGTGTGATAT+GGG - chr4_1:54291935-54291954 Msa0556210:CDS 45.0%
ACAGTGCTCACGAATGTTAC+AGG - chr4_1:54291976-54291995 Msa0556210:CDS 45.0%
ATAGGAGTTGCTACCACCAA+CGG + chr4_1:54292116-54292135 None:intergenic 45.0%
GCTCTATCAGTATGTCTGGA+AGG - chr4_1:54292144-54292163 Msa0556210:CDS 45.0%
! CAAAGAACAGAGAGCGTGTC+AGG - chr4_1:54288887-54288906 Msa0556210:three_prime_UTR 50.0%
!! CGAGGTTGGTGGAATGTGAT+TGG + chr4_1:54289193-54289212 None:intergenic 50.0%
!! GTTTAGCGTCGACATCATCG+AGG + chr4_1:54289211-54289230 None:intergenic 50.0%
GCAACACTCCCAACGCTAAA+TGG - chr4_1:54289339-54289358 Msa0556210:CDS 50.0%
ACGATGTCGCTCAAGGTCAA+TGG - chr4_1:54289432-54289451 Msa0556210:CDS 50.0%
TCGGTTCAAAAATCCGCGCT+AGG - chr4_1:54289465-54289484 Msa0556210:CDS 50.0%
CGGTTCAAAAATCCGCGCTA+GGG - chr4_1:54289466-54289485 Msa0556210:CDS 50.0%
TTCCCACCGATGAATCCTAC+CGG - chr4_1:54289570-54289589 Msa0556210:intron 50.0%
TTCCGGTAGGATTCATCGGT+GGG + chr4_1:54289575-54289594 None:intergenic 50.0%
TTTCCGGTAGGATTCATCGG+TGG + chr4_1:54289576-54289595 None:intergenic 50.0%
! GTTTATCGGTTGGGTGAAGC+CGG - chr4_1:54289685-54289704 Msa0556210:intron 50.0%
TTCCCAAACGGAATCATCCG+CGG + chr4_1:54289714-54289733 None:intergenic 50.0%
TTGACCGGGGAATTCGAAAG+GGG - chr4_1:54289906-54289925 Msa0556210:intron 50.0%
TGTGGCGCTCCACTATTCAA+GGG + chr4_1:54290025-54290044 None:intergenic 50.0%
ATGTGGCGCTCCACTATTCA+AGG + chr4_1:54290026-54290045 None:intergenic 50.0%
TGGTTCAGCTTCGAAGCATG+TGG + chr4_1:54290043-54290062 None:intergenic 50.0%
!! CCTAAAAACGTCGACTCCGA+AGG + chr4_1:54290175-54290194 None:intergenic 50.0%
! CCTTCGGAGTCGACGTTTTT+AGG - chr4_1:54290172-54290191 Msa0556210:intron 50.0%
!!! GGAGTCGACGTTTTTAGGGT+TGG - chr4_1:54290177-54290196 Msa0556210:intron 50.0%
CCTTGGTTCCAATGCAACAC+CGG + chr4_1:54290277-54290296 None:intergenic 50.0%
!! CGGTGTTGCATTGGAACCAA+GGG - chr4_1:54290275-54290294 Msa0556210:intron 50.0%
TGCTTTGCGACTACAGGAGA+TGG - chr4_1:54290328-54290347 Msa0556210:intron 50.0%
! ATTGTGGTGGGGTCTCTTGA+TGG - chr4_1:54290355-54290374 Msa0556210:intron 50.0%
! TTGTGGTGGGGTCTCTTGAT+GGG - chr4_1:54290356-54290375 Msa0556210:intron 50.0%
ATCGATGAGGATGGCGAAGA+CGG - chr4_1:54290402-54290421 Msa0556210:intron 50.0%
!!! GACTGGTTTTGGTGGTCGTA+TGG - chr4_1:54290555-54290574 Msa0556210:intron 50.0%
! TTGGTGGTCGTATGGGAAAC+AGG - chr4_1:54290563-54290582 Msa0556210:intron 50.0%
GGTCGTATGGGAAACAGGAT+AGG - chr4_1:54290568-54290587 Msa0556210:intron 50.0%
CCAGCCAAATGTGAATCCAG+AGG + chr4_1:54290619-54290638 None:intergenic 50.0%
CCTCTGGATTCACATTTGGC+TGG - chr4_1:54290616-54290635 Msa0556210:intron 50.0%
AACACCCTAGTTTCCGCACA+TGG + chr4_1:54291171-54291190 None:intergenic 50.0%
TGGATGGAACTTCTGCTGTC+TGG - chr4_1:54291200-54291219 Msa0556210:CDS 50.0%
TAGTGTGGGGGTAAACCTAG+TGG - chr4_1:54291231-54291250 Msa0556210:CDS 50.0%
AGTGTGGGGGTAAACCTAGT+GGG - chr4_1:54291232-54291251 Msa0556210:CDS 50.0%
CCAGATGCAAGTATGCAGCA+TGG + chr4_1:54291775-54291794 None:intergenic 50.0%
CCATGCTGCATACTTGCATC+TGG - chr4_1:54291772-54291791 Msa0556210:CDS 50.0%
ACTTGCCCACAGTTGCAACA+AGG + chr4_1:54291923-54291942 None:intergenic 50.0%
GGTACTTCTCAATCCCGCGA+AGG - chr4_1:54289071-54289090 Msa0556210:three_prime_UTR 55.0%
GGAAAATTCACGGCCTTCGC+GGG + chr4_1:54289087-54289106 None:intergenic 55.0%
CGGAAAATTCACGGCCTTCG+CGG + chr4_1:54289088-54289107 None:intergenic 55.0%
GTCGACATCATCGAGGTTGG+TGG + chr4_1:54289204-54289223 None:intergenic 55.0%
!! AGCGTCGACATCATCGAGGT+TGG + chr4_1:54289207-54289226 None:intergenic 55.0%
GGCGTAGGAGGTTCGTTTGT+CGG + chr4_1:54289372-54289391 None:intergenic 55.0%
AAGCCGCGGATGATTCCGTT+TGG - chr4_1:54289708-54289727 Msa0556210:intron 55.0%
AGCCGCGGATGATTCCGTTT+GGG - chr4_1:54289709-54289728 Msa0556210:intron 55.0%
! GCTGTTTCCGATGATGGCTC+CGG - chr4_1:54289737-54289756 Msa0556210:intron 55.0%
! CTGTTTCCGATGATGGCTCC+GGG - chr4_1:54289738-54289757 Msa0556210:intron 55.0%
ACTCTTCCCGGAGCCATCAT+CGG + chr4_1:54289747-54289766 None:intergenic 55.0%
ATAAGGCTCCGGACTCTTCC+CGG + chr4_1:54289759-54289778 None:intergenic 55.0%
! GGAAGAGTCCGGAGCCTTAT+CGG - chr4_1:54289759-54289778 Msa0556210:intron 55.0%
CCTCTAGACCGATAAGGCTC+CGG + chr4_1:54289770-54289789 None:intergenic 55.0%
TGACCGGGGAATTCGAAAGG+GGG - chr4_1:54289907-54289926 Msa0556210:intron 55.0%
CTACCCCCTTTCGAATTCCC+CGG + chr4_1:54289913-54289932 None:intergenic 55.0%
CCTTATTCGGCGTCTCATGC+CGG + chr4_1:54289961-54289980 None:intergenic 55.0%
!! CTAGTTCGCCGGTGTTGCAT+TGG - chr4_1:54290266-54290285 Msa0556210:intron 55.0%
!! CCGGTGTTGCATTGGAACCA+AGG - chr4_1:54290274-54290293 Msa0556210:intron 55.0%
! ATGGCGAAGACGGCTTTTCC+AGG - chr4_1:54290412-54290431 Msa0556210:intron 55.0%
! TGGCGAAGACGGCTTTTCCA+GGG - chr4_1:54290413-54290432 Msa0556210:intron 55.0%
! AAGACGGCTTTTCCAGGGCT+TGG - chr4_1:54290418-54290437 Msa0556210:intron 55.0%
GTAATCGGAGAACCAAGCCC+TGG + chr4_1:54290433-54290452 None:intergenic 55.0%
ACGCCACCTTGTTGCAACTG+TGG - chr4_1:54291914-54291933 Msa0556210:CDS 55.0%
CGCCACCTTGTTGCAACTGT+GGG - chr4_1:54291915-54291934 Msa0556210:CDS 55.0%
TGCCCACAGTTGCAACAAGG+TGG + chr4_1:54291920-54291939 None:intergenic 55.0%
TACCACCAACGGAGCTTCAG+GGG + chr4_1:54292105-54292124 None:intergenic 55.0%
CTACCACCAACGGAGCTTCA+GGG + chr4_1:54292106-54292125 None:intergenic 55.0%
AACTGCATTGCCCTGGCAGA+TGG - chr4_1:54292498-54292517 Msa0556210:five_prime_UTR 55.0%
! GAGTGTTGCCGCCGATGTGA+AGG + chr4_1:54289328-54289347 None:intergenic 60.0%
! GTTCGGTGGAAACCCTAGCG+CGG + chr4_1:54289481-54289500 None:intergenic 60.0%
ACGGAATCATCCGCGGCTTC+CGG + chr4_1:54289707-54289726 None:intergenic 60.0%
TGATGGCTCCGGGAAGAGTC+CGG - chr4_1:54289748-54289767 Msa0556210:intron 60.0%
! CCGGAGCCTTATCGGTCTAG+AGG - chr4_1:54289767-54289786 Msa0556210:intron 60.0%
CCGGCATGAGACGCCGAATA+AGG - chr4_1:54289958-54289977 Msa0556210:intron 60.0%
GCTACCACCAACGGAGCTTC+AGG + chr4_1:54292107-54292126 None:intergenic 60.0%
TTGGGTGAAGCCGGAAGCCG+CGG - chr4_1:54289694-54289713 Msa0556210:intron 65.0%
CGACTCCCCTGAAGCTCCGT+TGG - chr4_1:54292097-54292116 Msa0556210:CDS 65.0%
CTCCCCTGAAGCTCCGTTGG+TGG - chr4_1:54292100-54292119 Msa0556210:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 54288861 54292542 54288861 ID=Msa0556210;Name=Msa0556210
chr4_1 mRNA 54288861 54292542 54288861 ID=Msa0556210-mRNA-1;Parent=Msa0556210;Name=Msa0556210-mRNA-1;_AED=0.01;_eAED=0.01;_QI=207|1|1|1|1|1|2|364|631
chr4_1 exon 54288861 54289512 54288861 ID=Msa0556210-mRNA-1:exon:15961;Parent=Msa0556210-mRNA-1
chr4_1 exon 54290728 54292542 54290728 ID=Msa0556210-mRNA-1:exon:15960;Parent=Msa0556210-mRNA-1
chr4_1 five_prime_UTR 54292336 54292542 54292336 ID=Msa0556210-mRNA-1:five_prime_utr;Parent=Msa0556210-mRNA-1
chr4_1 CDS 54290728 54292335 54290728 ID=Msa0556210-mRNA-1:cds;Parent=Msa0556210-mRNA-1
chr4_1 CDS 54289225 54289512 54289225 ID=Msa0556210-mRNA-1:cds;Parent=Msa0556210-mRNA-1
chr4_1 three_prime_UTR 54288861 54289224 54288861 ID=Msa0556210-mRNA-1:three_prime_utr;Parent=Msa0556210-mRNA-1
Gene Sequence

>Msa0556210

ATGGGTACTTCTCAATCCCGCGAAGGCCGTGAATTTTCCGATTCCGACTCAGATTACGACGAACAAGACGATGAACAAGAACAAGAAGATCAAGATCAATACCAAGACGTTCAATCTTCATCCCAATCACATTCCACCAACCTCGATGATGTCGACGCTAAACTCAGTGCCTTAAAACTCAAATACTCTTCTCCTTCACCTTCAAAATCACAATCAGAGACAAAAACACCACTTCCCAAAAACGCTGTCAAGCTTTACCTTCACATCGGCGGCAACACTCCCAACGCTAAATGGATTCTCTCCGACAAACGAACCTCCTACGCCTTCGTCAAAAATGACGAAGACAAAGAAGACGACGAACAAAACGATGTCGCTCAAGGTCAATGGATTCTCAAAGTCGGTTCAAAAATCCGCGCTAGGGTTTCCACCGAACTTCAATTAAAGATGTTTGGTGATCAACGCCGTGTTGATTTCGTCTCCAACGGTGTATGGGCTCTTAAATTTCCCACCGATGAATCCTACCGGAAATTCGTCACTGAATTTCAAAACTGCACGTTTGAGAATGTTTACGGTTTATCACCGACGGAAGAGAATAAGGTTAAGGTTTACGGTAAGGAGTTTATCGGTTGGGTGAAGCCGGAAGCCGCGGATGATTCCGTTTGGGAAGATGCTGTTTCCGATGATGGCTCCGGGAAGAGTCCGGAGCCTTATCGGTCTAGAGGTGATTTGATGGAGGAGTTTGAAGAGGCTGCAAATGGTGGTATTCAAACCCTAACCCTAGGTGCTCTTGATAACAGTTTTCTTCTCAATGATGCTGGCTTTCAGGTTTACCGGAATTTTGACCGGGGAATTCGAAAGGGGGTAGCTGTGAAATATGAAGGTGGGAATCTCCGGCATGAGACGCCGAATAAGGCTTTGTTGATGAGGGCAGAGACTAACATGATGCTGATGAGTCCCTTGAATAGTGGAGCGCCACATGCTTCGAAGCTGAACCAGCTTGATATAGAAACAGGGAAGATTGTTTCAGAGTGGAAGTTTGAGAAAGATGGGGCTGATATTACTATGAGGGATATCACAAATGATACTAAAGGGTCACAATTGGATCCTTCGGAGTCGACGTTTTTAGGGTTGGATGATAACAGGCTCTGTCAATGGGATATGCGTGATAGAAAAGGAATTGTTCAGAATATAGCTACAGCTAGTTCGCCGGTGTTGCATTGGAACCAAGGGCATCAATTTTCAAGAGGGACTAATTTTCAATGCTTTGCGACTACAGGAGATGGTTCAATTGTGGTGGGGTCTCTTGATGGGAAGATAAGGTTGTATTCGAATAAATCGATGAGGATGGCGAAGACGGCTTTTCCAGGGCTTGGTTCTCCGATTACAAGCGTTGATGTTACTTTTGATGGAAAGTGGGTGTTGGGTACAACTGATACTTATTTGGTGTTGATTTGTACATTGTTTACTGATAAAGATGGGAAGACAAAGACTGGTTTTGGTGGTCGTATGGGAAACAGGATAGGTGCTCCTAGATTGTTGAAGCTCACTCCTCTGGATTCACATTTGGCTGGAACTACCAATAAGTTTCATGGTGGCCATTTCTCATGGGTCACTGAGAATGGCAAACAAGAACGCCACCTTGTTGCAACTGTGGGCAAGTTCAGTGTGATATGGGATTTTCAGCAGGTAAAGAACAGTGCTCACGAATGTTACAGGAATCAACTAGGGCTGAAAAGCTGTTACTGTTACAAGATAGTATTGAAGGACGAGTCAATCATAGAATCACGGTTTATGCATGACAACTATGCTGTTAGCGACTCCCCTGAAGCTCCGTTGGTGGTAGCAACTCCTATGAAAGTTAGCTCTATCAGTATGTCTGGAAGGCGAACCCGTTAA
Protein sequence

>Msa0556210

MGTSQSREGREFSDSDSDYDEQDDEQEQEDQDQYQDVQSSSQSHSTNLDDVDAKLSALKLKYSSPSPSKSQSETKTPLPKNAVKLYLHIGGNTPNAKWILSDKRTSYAFVKNDEDKEDDEQNDVAQGQWILKVGSKIRARVSTELQLKMFGDQRRVDFVSNGVWALKFPTDESYRKFVTEFQNCTFENVYGLSPTEENKVKVYGKEFIGWVKPEAADDSVWEDAVSDDGSGKSPEPYRSRGDLMEEFEEAANGGIQTLTLGALDNSFLLNDAGFQVYRNFDRGIRKGVAVKYEGGNLRHETPNKALLMRAETNMMLMSPLNSGAPHASKLNQLDIETGKIVSEWKFEKDGADITMRDITNDTKGSQLDPSESTFLGLDDNRLCQWDMRDRKGIVQNIATASSPVLHWNQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSNKSMRMAKTAFPGLGSPITSVDVTFDGKWVLGTTDTYLVLICTLFTDKDGKTKTGFGGRMGNRIGAPRLLKLTPLDSHLAGTTNKFHGGHFSWVTENGKQERHLVATVGKFSVIWDFQQVKNSAHECYRNQLGLKSCYCYKIVLKDESIIESRFMHDNYAVSDSPEAPLVVATPMKVSSISMSGRRTR*