AlfalfaGEDB | Msa0651980

M. sativa cultivar zhongmu-4 / Msa0651980

KEGG: -
GO: GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051239 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1903506 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651980	XP_013456887.1	95.238	420	17	1	1	420	1	417	0.0	820

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651980	sp\|Q9ZQ85\|EFM_ARATH	40.800	375	157	10	7	368	5	327	2.53e-64	215

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
Msa0651980	TF	GARP-G2-like

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0651980	Msa0694530	0.811712	6.102384e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651980	MtrunA17_Chr4g0045361	95.238	420	17	1	1	420	1	417	0.0	820
Msa0651980	MtrunA17_Chr4g0062921	40.053	377	157	14	7	367	5	328	1.18e-66	218
Msa0651980	MtrunA17_Chr5g0402631	39.216	408	155	11	8	410	27	346	4.30e-61	201
Msa0651980	MtrunA17_Chr1g0198601	35.097	359	143	12	44	371	10	309	5.53e-46	162
Msa0651980	MtrunA17_Chr5g0422621	35.942	345	142	12	41	371	16	295	4.40e-44	157
Msa0651980	MtrunA17_Chr7g0255711	50.746	67	32	1	270	336	84	149	3.23e-15	75.9
Msa0651980	MtrunA17_Chr1g0175081	51.724	58	28	0	274	331	19	76	4.45e-15	70.9
Msa0651980	MtrunA17_Chr7g0243081	40.698	86	51	0	245	330	39	124	3.30e-14	73.6
Msa0651980	MtrunA17_Chr2g0288601	50.769	65	32	0	263	327	57	121	4.27e-14	68.9
Msa0651980	MtrunA17_Chr5g0417521	55.172	58	26	0	274	331	12	69	7.50e-14	72.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0651980	AT2G03500.1	40.800	375	157	10	7	368	5	327	2.58e-65	215
Msa0651980	AT4G37180.1	36.216	370	160	10	9	377	12	306	2.75e-50	174
Msa0651980	AT4G37180.2	36.022	372	165	12	9	377	12	313	5.12e-48	168
Msa0651980	AT4G37180.3	35.737	319	135	8	9	327	12	260	1.62e-43	154
Msa0651980	AT1G49560.1	53.797	158	57	5	261	406	172	325	3.48e-38	141
Msa0651980	AT1G68670.1	69.892	93	20	1	274	358	212	304	1.27e-35	134
Msa0651980	AT1G68670.1	35.000	120	62	4	36	139	8	127	1.24e-11	66.2
Msa0651980	AT1G25550.1	54.622	119	47	2	274	385	206	324	5.02e-34	130
Msa0651980	AT1G25550.1	33.588	131	67	2	36	146	12	142	1.01e-14	75.5
Msa0651980	AT1G13300.1	70.000	90	22	2	275	359	179	268	7.61e-34	129

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Find 137 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTCATATTCAAAGACA+TGG	0.597800	4_3:-59584036	Msa0651980:CDS
AAAGAGAGCCTATTCCTTAC+AGG	0.270823	4_3:+59585492	None:intergenic
AAAGGTAGCAGTACGGCGTC+TGG	0.473278	4_3:-59584171	Msa0651980:CDS
AAATCTAAACTGAGTTCTGC+AGG	0.491660	4_3:+59586526	None:intergenic
AAATGACCTGATTCTTATCG+TGG	0.563659	4_3:+59583813	None:intergenic
AAGAACTACAACAGACTGAT+CGG	0.598391	4_3:+59584236	None:intergenic
AAGAGAAGGAAGAACCTGTA+AGG	0.506152	4_3:-59585506	Msa0651980:CDS
AAGAGTCTGAGGGAAGGATT+TGG	0.407195	4_3:-59585453	Msa0651980:CDS
AATAATGTAATAAGAAGAAG+TGG	0.434366	4_3:+59586779	None:intergenic
AATACATGAATACATAGAAG+AGG	0.594019	4_3:-59583924	Msa0651980:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATGTGAAATTAAGGATG+CGG	+	chr4_3:59583435-59583454	None:intergenic	30.0%
TCTTGTTGAGGAGTTAAAAA+GGG	+	chr4_3:59583599-59583618	None:intergenic	30.0%
TTCTTGTTGAGGAGTTAAAA+AGG	+	chr4_3:59583600-59583619	None:intergenic	30.0%
CATCAAACAAAAAGATCCAA+TGG	-	chr4_3:59583682-59583701	Msa0651980:three_prime_UTR	30.0%
TGATCAATCTCTTTCTTCAA+AGG	+	chr4_3:59584172-59584191	None:intergenic	30.0%
TTGCAACAGTAATCTTAATG+AGG	-	chr4_3:59584439-59584458	Msa0651980:intron	30.0%
TGCAACAGTAATCTTAATGA+GGG	-	chr4_3:59584440-59584459	Msa0651980:intron	30.0%
TGTAGTAGTAATAGAAATGG+AGG	-	chr4_3:59584542-59584561	Msa0651980:intron	30.0%
TGATAATCCATAGTTTGGTT+GGG	+	chr4_3:59585394-59585413	None:intergenic	30.0%
AATTGCAAAGGCAAATCATT+TGG	+	chr4_3:59585477-59585496	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	59583353	59586911	59583353	ID=Msa0651980;Name=Msa0651980
chr4_3	mRNA	59583353	59586911	59583353	ID=Msa0651980-mRNA-1;Parent=Msa0651980;Name=Msa0651980-mRNA-1;_AED=0.13;_eAED=0.13;_QI=348\|0.8\|0.83\|1\|0.8\|0.66\|6\|667\|420
chr4_3	exon	59583353	59584301	59583353	ID=Msa0651980-mRNA-1:exon:15969;Parent=Msa0651980-mRNA-1
chr4_3	exon	59584611	59584687	59584611	ID=Msa0651980-mRNA-1:exon:15968;Parent=Msa0651980-mRNA-1
chr4_3	exon	59585268	59585575	59585268	ID=Msa0651980-mRNA-1:exon:15967;Parent=Msa0651980-mRNA-1
chr4_3	exon	59585676	59585776	59585676	ID=Msa0651980-mRNA-1:exon:15966;Parent=Msa0651980-mRNA-1
chr4_3	exon	59585892	59586169	59585892	ID=Msa0651980-mRNA-1:exon:15965;Parent=Msa0651980-mRNA-1
chr4_3	exon	59586347	59586911	59586347	ID=Msa0651980-mRNA-1:exon:15964;Parent=Msa0651980-mRNA-1
chr4_3	five_prime_UTR	59586564	59586911	59586564	ID=Msa0651980-mRNA-1:five_prime_utr;Parent=Msa0651980-mRNA-1
chr4_3	CDS	59586347	59586563	59586347	ID=Msa0651980-mRNA-1:cds;Parent=Msa0651980-mRNA-1
chr4_3	CDS	59585892	59586169	59585892	ID=Msa0651980-mRNA-1:cds;Parent=Msa0651980-mRNA-1
chr4_3	CDS	59585676	59585776	59585676	ID=Msa0651980-mRNA-1:cds;Parent=Msa0651980-mRNA-1
chr4_3	CDS	59585268	59585575	59585268	ID=Msa0651980-mRNA-1:cds;Parent=Msa0651980-mRNA-1
chr4_3	CDS	59584611	59584687	59584611	ID=Msa0651980-mRNA-1:cds;Parent=Msa0651980-mRNA-1
chr4_3	CDS	59584020	59584301	59584020	ID=Msa0651980-mRNA-1:cds;Parent=Msa0651980-mRNA-1
chr4_3	three_prime_UTR	59583353	59584019	59583353	ID=Msa0651980-mRNA-1:three_prime_utr;Parent=Msa0651980-mRNA-1

Gene Sequence

>Msa0651980

ATGGGTTGTGTTGTTCCTGCAGAACTCAGTTTAGATTTAAGACCAACTTTCGTTCCCAAAACCATCGCTAATTTCCTCTATCATCTTTCCACAATCCAAACAACCTCCGATAAACTCTCCAAACTCCATGATTTCCTCTCTCGACTCGAAGATGAACTCAATAAGATCGATGCTTTCAAACGTGAACTACCTCTCTCCATGCTCCTCTTAAACGACGCAATTTTGGTTTTGAAGGAGGAATTGGAAAAATGTAGAAGTAAAAATTCTGTGCCAGTTTTGGAAGAGTTTATTCCTTTGAAGAAAGAGATTGATCAGAGTGAAGAGAATAATAATAATGATAGAGACAAGAACAACAACAATGAATGCAGCAAAGATAAGAAGAATTGGATGAGTTCTGTTCAGTTATGGAATAACAACACAACAACTTCTAATAATAATGTCTCTGATCATCATCATAAACATAACAATCATAATCTTAATAAATTAGAAACAAAGAAAAGGGAGGAAGAAGGACAATTTGTGACTGCAGCTGAGGACCTTTTTCAATCTTGTAGTAGTAATAGAAATGGAGGAAGTGCTTTTATGCCTTTTTCACCGTATTCTTCTGTTCCTGTGACAACAGTGACATTATCAGCACCTAAAGAAGAGAAGGAAGAACCTGTAAGGAATAGGCTCTCTTTTCTGACTCCTGAGGTGAAGAGTCTGAGGGAAGGATTTGGTTCGAGGGGATCGAGAAACAGTTCTAACAGGGCAGTTTCGTCGTCGTCTCCTCCAACCGTGCAGCCGAGTATGCGTGCTGCGCCACTTCAGCCGCAGCAGACTTCTAGGAAACAGAGGAGATGCTGGTCACCGGAATTGCACCGGAGATTTGTTAATGCGTTGCAGAAGCTTGGAGGTTCTCAAGCAGCAACTCCAAAGCAAATTAGAGAACTCATGCAAGTTGATGGCCTGACTAATGATGAAGTGAAGAGCCATTTGCAAAAATACCGACTTCATACGCGGAGAGTTCCAGCTCCAAGTGGTACCGATCAGTCTGTTGTAGTTCTTGGAGGTTTATGGATGCCTCAAGAACAATACAACGACTCTTCCAAAGGTAGCAGTACGGCGTCTGGTTCTCCACAAAGTCCACTTCATTTAGCTACAGGATCCCGGGGAGGGACATCGCCAACTGAAGGTGATAGCATGGACGATGACGATGATGAAAAATCTGAGAGTTATAGCTGGAAAAGTCATATTCAAAGACATGGAAAAGTTGGTGTATAG

Protein sequence

>Msa0651980

MGCVVPAELSLDLRPTFVPKTIANFLYHLSTIQTTSDKLSKLHDFLSRLEDELNKIDAFKRELPLSMLLLNDAILVLKEELEKCRSKNSVPVLEEFIPLKKEIDQSEENNNNDRDKNNNNECSKDKKNWMSSVQLWNNNTTTSNNNVSDHHHKHNNHNLNKLETKKREEEGQFVTAAEDLFQSCSSNRNGGSAFMPFSPYSSVPVTTVTLSAPKEEKEEPVRNRLSFLTPEVKSLREGFGSRGSRNSSNRAVSSSSPPTVQPSMRAAPLQPQQTSRKQRRCWSPELHRRFVNALQKLGGSQAATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRVPAPSGTDQSVVVLGGLWMPQEQYNDSSKGSSTASGSPQSPLHLATGSRGGTSPTEGDSMDDDDDEKSESYSWKSHIQRHGKVGV*