Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652260 | KEH30925.1 | 94.667 | 225 | 6 | 1 | 37 | 261 | 1 | 219 | 1.85e-152 | 434 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652260 | A0A072UYK9 | 94.667 | 225 | 6 | 1 | 37 | 261 | 1 | 219 | 8.86e-153 | 434 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652260 | Msa0694820 | 0.920575 | 1.075850e-87 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652260 | MtrunA17_Chr4g0045821 | 96.175 | 183 | 7 | 0 | 70 | 252 | 52 | 234 | 1.63e-128 | 367 |
| Msa0652260 | MtrunA17_Chr4g0045831 | 96.667 | 60 | 2 | 0 | 177 | 236 | 19 | 78 | 1.20e-33 | 121 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652260 | AT5G10460.1 | 70.408 | 196 | 58 | 0 | 57 | 252 | 9 | 204 | 1.21e-101 | 298 |
Find 53 sgRNAs with CRISPR-Local
Find 260 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAATGTGACGGTACAATTT+TGG | 0.214884 | 4_3:+59960656 | None:intergenic |
| GCTTCAACAGTTACATAATC+TGG | 0.272874 | 4_3:+59958798 | None:intergenic |
| CTCTTTGTAGGTTTGGTTGT+TGG | 0.293904 | 4_3:-59960438 | Msa0652260:intron |
| TGGAGCTTTGCGCTGCAAAA+AGG | 0.317353 | 4_3:-59958842 | Msa0652260:CDS |
| GGCTCATGGGACTGAAGCCT+TGG | 0.350841 | 4_3:-59958919 | Msa0652260:CDS |
| TTCATTTCACTTGGAGTGGC+AGG | 0.374055 | 4_3:-59959449 | Msa0652260:CDS |
| TAATAACATACATGTTGAAA+TGG | 0.390410 | 4_3:+59960370 | None:intergenic |
| TGCCTTGAAACGGCGTGTTT+CGG | 0.395429 | 4_3:+59960531 | None:intergenic |
| TGAAGAAGCTGAGTTTGTTT+TGG | 0.398598 | 4_3:-59958940 | Msa0652260:CDS |
| CGCCGAAACACGCCGTTTCA+AGG | 0.415686 | 4_3:-59960533 | Msa0652260:intron |
| CAAACAGGAGAGATGATCCT+TGG | 0.430300 | 4_3:-59959497 | Msa0652260:intron |
| TGATCCTTGGTTTGCATCGT+TGG | 0.434706 | 4_3:-59959484 | Msa0652260:CDS |
| GTTGAAATGGCACCGGGATA+AGG | 0.442443 | 4_3:+59960383 | None:intergenic |
| CTTCAGTTTCAGACCTTCAC+CGG | 0.444117 | 4_3:-59960568 | Msa0652260:CDS |
| AATTGTACCGTCACATTCAT+CGG | 0.457739 | 4_3:-59960652 | Msa0652260:CDS |
| GGCGTGTTTCGGCGAGTTGT+CGG | 0.462642 | 4_3:+59960542 | None:intergenic |
| AACAGTTACATAATCTGGAT+TGG | 0.467937 | 4_3:+59958803 | None:intergenic |
| GTTTGGTTGTTGGATCAGTT+CGG | 0.470315 | 4_3:-59960428 | Msa0652260:CDS |
| GCTCATGGGACTGAAGCCTT+GGG | 0.470652 | 4_3:-59958918 | Msa0652260:CDS |
| AAGCCTTGGGCGATGCCAAT+GGG | 0.482602 | 4_3:-59958905 | Msa0652260:CDS |
| TGCAAAGACGGGTGGGAAGA+TGG | 0.483594 | 4_3:-59960269 | Msa0652260:CDS |
| CATTTCACTTGGAGTGGCAG+GGG | 0.489985 | 4_3:-59959447 | Msa0652260:CDS |
| GGGCTTGGACTTGCGAGTTG+TGG | 0.493270 | 4_3:-59958970 | Msa0652260:CDS |
| CATTGAACGTGCATTCCCAT+TGG | 0.498390 | 4_3:+59958890 | None:intergenic |
| GATCCTTGGTTTGCATCGTT+GGG | 0.501264 | 4_3:-59959483 | Msa0652260:CDS |
| TTGTTAGAAACAAAATCAAA+TGG | 0.507981 | 4_3:+59960703 | None:intergenic |
| GATCTTGTATTCATTTCACT+TGG | 0.513220 | 4_3:-59959458 | Msa0652260:CDS |
| GAAGCCTTGGGCGATGCCAA+TGG | 0.523322 | 4_3:-59958906 | Msa0652260:CDS |
| AGTAGAAAACATTGCAAAGA+CGG | 0.530288 | 4_3:-59960281 | Msa0652260:CDS |
| GAGTTGTCGGAGACCGGTGA+AGG | 0.532249 | 4_3:+59960555 | None:intergenic |
| AGAGACTTGCGTGTGATGCC+TGG | 0.535025 | 4_3:-59958774 | Msa0652260:CDS |
| TCTGGATTGGCTACCACCAT+AGG | 0.537526 | 4_3:+59958816 | None:intergenic |
| TTCGGCGAGTTGTCGGAGAC+CGG | 0.538914 | 4_3:+59960549 | None:intergenic |
| ATTCCCATTGGCATCGCCCA+AGG | 0.544337 | 4_3:+59958902 | None:intergenic |
| TAGAGAGAAATGCCTTGAAA+CGG | 0.546547 | 4_3:+59960521 | None:intergenic |
| ATTGTACCGTCACATTCATC+GGG | 0.550538 | 4_3:-59960651 | Msa0652260:CDS |
| CATACATGTTGAAATGGCAC+CGG | 0.562271 | 4_3:+59960376 | None:intergenic |
| TGTATTCATTTCACTTGGAG+TGG | 0.565374 | 4_3:-59959453 | Msa0652260:CDS |
| TTGATGAGTGAGTTCTCCAC+TGG | 0.576232 | 4_3:+59960153 | None:intergenic |
| GTAGAAAACATTGCAAAGAC+GGG | 0.576844 | 4_3:-59960280 | Msa0652260:CDS |
| TCATTTCACTTGGAGTGGCA+GGG | 0.578878 | 4_3:-59959448 | Msa0652260:CDS |
| GAAGATAAAGCAAATTCACC+AGG | 0.586316 | 4_3:+59958756 | None:intergenic |
| GAAAACATTGCAAAGACGGG+TGG | 0.587859 | 4_3:-59960277 | Msa0652260:CDS |
| ATACATGTTGAAATGGCACC+GGG | 0.592097 | 4_3:+59960377 | None:intergenic |
| CAGGGGAGCAATATCTCTTG+AGG | 0.601308 | 4_3:-59959430 | Msa0652260:intron |
| TCACTCATCAATACTTACAA+AGG | 0.607161 | 4_3:-59960141 | Msa0652260:intron |
| TTTCTAGGAGCAATTACCAG+TGG | 0.611343 | 4_3:-59960169 | Msa0652260:CDS |
| GTGAAGGTCTGAAACTGAAG+TGG | 0.623751 | 4_3:+59960571 | None:intergenic |
| AAAACATTGCAAAGACGGGT+GGG | 0.636496 | 4_3:-59960276 | Msa0652260:CDS |
| ATTCGACCCGATGAATGTGA+CGG | 0.637130 | 4_3:+59960645 | None:intergenic |
| GATGGAAAACAACCTTATCC+CGG | 0.637366 | 4_3:-59960395 | Msa0652260:CDS |
| CTTCCCAACGATGCAAACCA+AGG | 0.648217 | 4_3:+59959480 | None:intergenic |
| CAGTTCGGAGTCCTCCACGA+TGG | 0.655258 | 4_3:-59960413 | Msa0652260:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACAAAAAAGAAAATTT+AGG | + | chr4_3:59959152-59959171 | None:intergenic | 10.0% |
| !! | TCAAATATAAAAAAAAATAC+AGG | - | chr4_3:59960375-59960394 | Msa0652260:intron | 10.0% |
| !! | CAAATATAAAAAAAAATACA+GGG | - | chr4_3:59960376-59960395 | Msa0652260:intron | 10.0% |
| !! | TAAAACAAAAAAGAAAATTT+AGG | + | chr4_3:59959152-59959171 | None:intergenic | 10.0% |
| !! | TCAAATATAAAAAAAAATAC+AGG | - | chr4_3:59960375-59960394 | Msa0652260:intron | 10.0% |
| !! | CAAATATAAAAAAAAATACA+GGG | - | chr4_3:59960376-59960395 | Msa0652260:intron | 10.0% |
| !! | ATTCAAAGAATTGAAAAATT+TGG | - | chr4_3:59960280-59960299 | Msa0652260:CDS | 15.0% |
| !! | ATTCAAAGAATTGAAAAATT+TGG | - | chr4_3:59960280-59960299 | Msa0652260:CDS | 15.0% |
| !! | TTGTTAGAAACAAAATCAAA+TGG | + | chr4_3:59958761-59958780 | None:intergenic | 20.0% |
| !! | TAATAACATACATGTTGAAA+TGG | + | chr4_3:59959094-59959113 | None:intergenic | 20.0% |
| !! | GTTATTATGTCTTATCTTTA+TGG | - | chr4_3:59959107-59959126 | Msa0652260:intron | 20.0% |
| !! | TCTCAACTAAAAAATACATA+CGG | + | chr4_3:59959811-59959830 | None:intergenic | 20.0% |
| !!! | ATAATATCTGTTTTTCAAAC+AGG | - | chr4_3:59959949-59959968 | Msa0652260:intron | 20.0% |
| !!! | TTTTCTTGTGCAATATAAAA+TGG | - | chr4_3:59960135-59960154 | Msa0652260:intron | 20.0% |
| !! | ATTCAATTCAAGTCAAATTA+TGG | - | chr4_3:59960352-59960371 | Msa0652260:intron | 20.0% |
| !! | TTGTTAGAAACAAAATCAAA+TGG | + | chr4_3:59958761-59958780 | None:intergenic | 20.0% |
| !! | TAATAACATACATGTTGAAA+TGG | + | chr4_3:59959094-59959113 | None:intergenic | 20.0% |
| !! | GTTATTATGTCTTATCTTTA+TGG | - | chr4_3:59959107-59959126 | Msa0652260:intron | 20.0% |
| !! | TCTCAACTAAAAAATACATA+CGG | + | chr4_3:59959811-59959830 | None:intergenic | 20.0% |
| !!! | ATAATATCTGTTTTTCAAAC+AGG | - | chr4_3:59959949-59959968 | Msa0652260:intron | 20.0% |
| !!! | TTTTCTTGTGCAATATAAAA+TGG | - | chr4_3:59960135-59960154 | Msa0652260:intron | 20.0% |
| !! | ATTCAATTCAAGTCAAATTA+TGG | - | chr4_3:59960352-59960371 | Msa0652260:intron | 20.0% |
| ! | TTATGTCTTATCTTTATGGT+TGG | - | chr4_3:59959111-59959130 | Msa0652260:intron | 25.0% |
| ! | CTAAGAAACAGAAATTATGT+TGG | + | chr4_3:59959354-59959373 | None:intergenic | 25.0% |
| !! | GAAAATAACATTTAGCCTTT+AGG | + | chr4_3:59960120-59960139 | None:intergenic | 25.0% |
| ! | ATATAAAATGGCATGATTCT+TGG | - | chr4_3:59960147-59960166 | Msa0652260:CDS | 25.0% |
| ! | TATAAAATGGCATGATTCTT+GGG | - | chr4_3:59960148-59960167 | Msa0652260:CDS | 25.0% |
| ! | AACTAATTATTCTGCTTACA+AGG | - | chr4_3:59960216-59960235 | Msa0652260:CDS | 25.0% |
| ! | ACAATCAGTTATCTATTGTT+TGG | + | chr4_3:59960312-59960331 | None:intergenic | 25.0% |
| ! | AAACAATAGATAACTGATTG+TGG | - | chr4_3:59960311-59960330 | Msa0652260:intron | 25.0% |
| ! | CTATTGATGCATATTATCTT+TGG | + | chr4_3:59960435-59960454 | None:intergenic | 25.0% |
| ! | CATACAAATAACTTTGTCTA+GGG | - | chr4_3:59960471-59960490 | Msa0652260:intron | 25.0% |
| ! | TGAAGACCTTGAAAAAATAT+TGG | - | chr4_3:59960599-59960618 | Msa0652260:CDS | 25.0% |
| !!! | AAAGCTCCAATATTTTTTCA+AGG | + | chr4_3:59960608-59960627 | None:intergenic | 25.0% |
| ! | TTATGTCTTATCTTTATGGT+TGG | - | chr4_3:59959111-59959130 | Msa0652260:intron | 25.0% |
| ! | CTAAGAAACAGAAATTATGT+TGG | + | chr4_3:59959354-59959373 | None:intergenic | 25.0% |
| !! | GAAAATAACATTTAGCCTTT+AGG | + | chr4_3:59960120-59960139 | None:intergenic | 25.0% |
| ! | ATATAAAATGGCATGATTCT+TGG | - | chr4_3:59960147-59960166 | Msa0652260:CDS | 25.0% |
| ! | TATAAAATGGCATGATTCTT+GGG | - | chr4_3:59960148-59960167 | Msa0652260:CDS | 25.0% |
| ! | AACTAATTATTCTGCTTACA+AGG | - | chr4_3:59960216-59960235 | Msa0652260:CDS | 25.0% |
| ! | ACAATCAGTTATCTATTGTT+TGG | + | chr4_3:59960312-59960331 | None:intergenic | 25.0% |
| ! | AAACAATAGATAACTGATTG+TGG | - | chr4_3:59960311-59960330 | Msa0652260:intron | 25.0% |
| ! | CTATTGATGCATATTATCTT+TGG | + | chr4_3:59960435-59960454 | None:intergenic | 25.0% |
| ! | CATACAAATAACTTTGTCTA+GGG | - | chr4_3:59960471-59960490 | Msa0652260:intron | 25.0% |
| ! | TGAAGACCTTGAAAAAATAT+TGG | - | chr4_3:59960599-59960618 | Msa0652260:CDS | 25.0% |
| !!! | AAAGCTCCAATATTTTTTCA+AGG | + | chr4_3:59960608-59960627 | None:intergenic | 25.0% |
| GAAGAAGAAGAAGAACATTT+GGG | + | chr4_3:59958851-59958870 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAACATT+TGG | + | chr4_3:59958852-59958871 | None:intergenic | 30.0% | |
| GTTATGTTGTTACTCTTTGT+AGG | - | chr4_3:59959011-59959030 | Msa0652260:intron | 30.0% | |
| AGTAGAAAACATTGCAAAGA+CGG | - | chr4_3:59959180-59959199 | Msa0652260:intron | 30.0% | |
| CTTGAAAAAGTCAAAAGTCT+TGG | - | chr4_3:59959253-59959272 | Msa0652260:intron | 30.0% | |
| ! | TTTGATGCTTCTCTTTTTCT+AGG | - | chr4_3:59959277-59959296 | Msa0652260:intron | 30.0% |
| TCACTCATCAATACTTACAA+AGG | - | chr4_3:59959320-59959339 | Msa0652260:intron | 30.0% | |
| TAAACATTTGTGAGAGCTTA+TGG | - | chr4_3:59959461-59959480 | Msa0652260:CDS | 30.0% | |
| TATGAAAACAGCTTATGACA+TGG | - | chr4_3:59959548-59959567 | Msa0652260:intron | 30.0% | |
| ! | GAGACACTATAGTTCTATTT+GGG | + | chr4_3:59959716-59959735 | None:intergenic | 30.0% |
| ! | TGAGACACTATAGTTCTATT+TGG | + | chr4_3:59959717-59959736 | None:intergenic | 30.0% |
| AAAATACATACGGATGAAAC+AGG | + | chr4_3:59959801-59959820 | None:intergenic | 30.0% | |
| !! | TATCTGTAGAATTTGTTGCA+CGG | + | chr4_3:59959836-59959855 | None:intergenic | 30.0% |
| GCAACAAATTCTACAGATAT+CGG | - | chr4_3:59959837-59959856 | Msa0652260:intron | 30.0% | |
| CAACAAATTCTACAGATATC+GGG | - | chr4_3:59959838-59959857 | Msa0652260:intron | 30.0% | |
| AACAAATTCTACAGATATCG+GGG | - | chr4_3:59959839-59959858 | Msa0652260:intron | 30.0% | |
| TAAGAAAATTCTCCTGCTAA+TGG | + | chr4_3:59959904-59959923 | None:intergenic | 30.0% | |
| GATCTTGTATTCATTTCACT+TGG | - | chr4_3:59960003-59960022 | Msa0652260:intron | 30.0% | |
| ATAGTTGTCTTGGTAAACTA+AGG | - | chr4_3:59960173-59960192 | Msa0652260:CDS | 30.0% | |
| AATACCTTCAAAGTTTCATC+GGG | + | chr4_3:59960263-59960282 | None:intergenic | 30.0% | |
| GAATACCTTCAAAGTTTCAT+CGG | + | chr4_3:59960264-59960283 | None:intergenic | 30.0% | |
| GCATACAAATAACTTTGTCT+AGG | - | chr4_3:59960470-59960489 | Msa0652260:intron | 30.0% | |
| AACAGTTACATAATCTGGAT+TGG | + | chr4_3:59960661-59960680 | None:intergenic | 30.0% | |
| GAAGAAGAAGAAGAACATTT+GGG | + | chr4_3:59958851-59958870 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAACATT+TGG | + | chr4_3:59958852-59958871 | None:intergenic | 30.0% | |
| GTTATGTTGTTACTCTTTGT+AGG | - | chr4_3:59959011-59959030 | Msa0652260:intron | 30.0% | |
| AGTAGAAAACATTGCAAAGA+CGG | - | chr4_3:59959180-59959199 | Msa0652260:intron | 30.0% | |
| CTTGAAAAAGTCAAAAGTCT+TGG | - | chr4_3:59959253-59959272 | Msa0652260:intron | 30.0% | |
| ! | TTTGATGCTTCTCTTTTTCT+AGG | - | chr4_3:59959277-59959296 | Msa0652260:intron | 30.0% |
| TCACTCATCAATACTTACAA+AGG | - | chr4_3:59959320-59959339 | Msa0652260:intron | 30.0% | |
| TAAACATTTGTGAGAGCTTA+TGG | - | chr4_3:59959461-59959480 | Msa0652260:CDS | 30.0% | |
| TATGAAAACAGCTTATGACA+TGG | - | chr4_3:59959548-59959567 | Msa0652260:intron | 30.0% | |
| ! | GAGACACTATAGTTCTATTT+GGG | + | chr4_3:59959716-59959735 | None:intergenic | 30.0% |
| ! | TGAGACACTATAGTTCTATT+TGG | + | chr4_3:59959717-59959736 | None:intergenic | 30.0% |
| AAAATACATACGGATGAAAC+AGG | + | chr4_3:59959801-59959820 | None:intergenic | 30.0% | |
| !! | TATCTGTAGAATTTGTTGCA+CGG | + | chr4_3:59959836-59959855 | None:intergenic | 30.0% |
| GCAACAAATTCTACAGATAT+CGG | - | chr4_3:59959837-59959856 | Msa0652260:intron | 30.0% | |
| CAACAAATTCTACAGATATC+GGG | - | chr4_3:59959838-59959857 | Msa0652260:intron | 30.0% | |
| AACAAATTCTACAGATATCG+GGG | - | chr4_3:59959839-59959858 | Msa0652260:intron | 30.0% | |
| TAAGAAAATTCTCCTGCTAA+TGG | + | chr4_3:59959904-59959923 | None:intergenic | 30.0% | |
| GATCTTGTATTCATTTCACT+TGG | - | chr4_3:59960003-59960022 | Msa0652260:intron | 30.0% | |
| ATAGTTGTCTTGGTAAACTA+AGG | - | chr4_3:59960173-59960192 | Msa0652260:CDS | 30.0% | |
| AATACCTTCAAAGTTTCATC+GGG | + | chr4_3:59960263-59960282 | None:intergenic | 30.0% | |
| GAATACCTTCAAAGTTTCAT+CGG | + | chr4_3:59960264-59960283 | None:intergenic | 30.0% | |
| GCATACAAATAACTTTGTCT+AGG | - | chr4_3:59960470-59960489 | Msa0652260:intron | 30.0% | |
| AACAGTTACATAATCTGGAT+TGG | + | chr4_3:59960661-59960680 | None:intergenic | 30.0% | |
| ! | GAATGTGACGGTACAATTTT+GGG | + | chr4_3:59958807-59958826 | None:intergenic | 35.0% |
| ! | TGAATGTGACGGTACAATTT+TGG | + | chr4_3:59958808-59958827 | None:intergenic | 35.0% |
| AATTGTACCGTCACATTCAT+CGG | - | chr4_3:59958809-59958828 | Msa0652260:CDS | 35.0% | |
| TAGAGAGAAATGCCTTGAAA+CGG | + | chr4_3:59958943-59958962 | None:intergenic | 35.0% | |
| GTTGTTACTCTTTGTAGGTT+TGG | - | chr4_3:59959016-59959035 | Msa0652260:intron | 35.0% | |
| GTAGAAAACATTGCAAAGAC+GGG | - | chr4_3:59959181-59959200 | Msa0652260:intron | 35.0% | |
| AACGAAACAGAAAAAATGCG+TGG | + | chr4_3:59959398-59959417 | None:intergenic | 35.0% | |
| TGTTTCGTTTACGTTCTGTT+TGG | - | chr4_3:59959409-59959428 | Msa0652260:intron | 35.0% | |
| GTAAGCTGAAAACAGCTTAT+GGG | + | chr4_3:59959504-59959523 | None:intergenic | 35.0% | |
| AGTAAGCTGAAAACAGCTTA+TGG | + | chr4_3:59959505-59959524 | None:intergenic | 35.0% | |
| CTTACTTACAAAAGCTCTCA+AGG | - | chr4_3:59959519-59959538 | Msa0652260:intron | 35.0% | |
| AGTAAGCTGAAAACAGTGTA+TGG | + | chr4_3:59959574-59959593 | None:intergenic | 35.0% | |
| !! | ATCTGTAGAATTTGTTGCAC+GGG | + | chr4_3:59959835-59959854 | None:intergenic | 35.0% |
| TGTATTCATTTCACTTGGAG+TGG | - | chr4_3:59960008-59960027 | Msa0652260:intron | 35.0% | |
| TTCTTGGGTAATAGTTGTCT+TGG | - | chr4_3:59960163-59960182 | Msa0652260:CDS | 35.0% | |
| CAATAGATAACTGATTGTGG+TGG | - | chr4_3:59960314-59960333 | Msa0652260:intron | 35.0% | |
| ! | AAATAACTTTGTCTAGGGCT+TGG | - | chr4_3:59960476-59960495 | Msa0652260:intron | 35.0% |
| !! | TGAAGAAGCTGAGTTTGTTT+TGG | - | chr4_3:59960521-59960540 | Msa0652260:intron | 35.0% |
| GCTTCAACAGTTACATAATC+TGG | + | chr4_3:59960666-59960685 | None:intergenic | 35.0% | |
| GAAGATAAAGCAAATTCACC+AGG | + | chr4_3:59960708-59960727 | None:intergenic | 35.0% | |
| ! | GAATGTGACGGTACAATTTT+GGG | + | chr4_3:59958807-59958826 | None:intergenic | 35.0% |
| ! | TGAATGTGACGGTACAATTT+TGG | + | chr4_3:59958808-59958827 | None:intergenic | 35.0% |
| AATTGTACCGTCACATTCAT+CGG | - | chr4_3:59958809-59958828 | Msa0652260:CDS | 35.0% | |
| TAGAGAGAAATGCCTTGAAA+CGG | + | chr4_3:59958943-59958962 | None:intergenic | 35.0% | |
| GTTGTTACTCTTTGTAGGTT+TGG | - | chr4_3:59959016-59959035 | Msa0652260:intron | 35.0% | |
| GTAGAAAACATTGCAAAGAC+GGG | - | chr4_3:59959181-59959200 | Msa0652260:intron | 35.0% | |
| AACGAAACAGAAAAAATGCG+TGG | + | chr4_3:59959398-59959417 | None:intergenic | 35.0% | |
| TGTTTCGTTTACGTTCTGTT+TGG | - | chr4_3:59959409-59959428 | Msa0652260:intron | 35.0% | |
| GTAAGCTGAAAACAGCTTAT+GGG | + | chr4_3:59959504-59959523 | None:intergenic | 35.0% | |
| AGTAAGCTGAAAACAGCTTA+TGG | + | chr4_3:59959505-59959524 | None:intergenic | 35.0% | |
| CTTACTTACAAAAGCTCTCA+AGG | - | chr4_3:59959519-59959538 | Msa0652260:intron | 35.0% | |
| AGTAAGCTGAAAACAGTGTA+TGG | + | chr4_3:59959574-59959593 | None:intergenic | 35.0% | |
| !! | ATCTGTAGAATTTGTTGCAC+GGG | + | chr4_3:59959835-59959854 | None:intergenic | 35.0% |
| TGTATTCATTTCACTTGGAG+TGG | - | chr4_3:59960008-59960027 | Msa0652260:intron | 35.0% | |
| TTCTTGGGTAATAGTTGTCT+TGG | - | chr4_3:59960163-59960182 | Msa0652260:CDS | 35.0% | |
| CAATAGATAACTGATTGTGG+TGG | - | chr4_3:59960314-59960333 | Msa0652260:intron | 35.0% | |
| ! | AAATAACTTTGTCTAGGGCT+TGG | - | chr4_3:59960476-59960495 | Msa0652260:intron | 35.0% |
| !! | TGAAGAAGCTGAGTTTGTTT+TGG | - | chr4_3:59960521-59960540 | Msa0652260:intron | 35.0% |
| GCTTCAACAGTTACATAATC+TGG | + | chr4_3:59960666-59960685 | None:intergenic | 35.0% | |
| GAAGATAAAGCAAATTCACC+AGG | + | chr4_3:59960708-59960727 | None:intergenic | 35.0% | |
| ATTGTACCGTCACATTCATC+GGG | - | chr4_3:59958810-59958829 | Msa0652260:CDS | 40.0% | |
| ! | CTCTTTGTAGGTTTGGTTGT+TGG | - | chr4_3:59959023-59959042 | Msa0652260:intron | 40.0% |
| GTTTGGTTGTTGGATCAGTT+CGG | - | chr4_3:59959033-59959052 | Msa0652260:intron | 40.0% | |
| !! | GATAAGGTTGTTTTCCATCG+TGG | + | chr4_3:59959065-59959084 | None:intergenic | 40.0% |
| GATGGAAAACAACCTTATCC+CGG | - | chr4_3:59959066-59959085 | Msa0652260:intron | 40.0% | |
| ATACATGTTGAAATGGCACC+GGG | + | chr4_3:59959087-59959106 | None:intergenic | 40.0% | |
| CATACATGTTGAAATGGCAC+CGG | + | chr4_3:59959088-59959107 | None:intergenic | 40.0% | |
| AAAACATTGCAAAGACGGGT+GGG | - | chr4_3:59959185-59959204 | Msa0652260:intron | 40.0% | |
| ! | TTTCTAGGAGCAATTACCAG+TGG | - | chr4_3:59959292-59959311 | Msa0652260:intron | 40.0% |
| !! | GCTGTTTTCATAAGCCATCA+TGG | + | chr4_3:59959609-59959628 | None:intergenic | 40.0% |
| TAGGAAGAAGCAACGGAATA+TGG | + | chr4_3:59960101-59960120 | None:intergenic | 40.0% | |
| ATTCCGTTGCTTCTTCCTAA+AGG | - | chr4_3:59960102-59960121 | Msa0652260:intron | 40.0% | |
| ! | TAGCCTTTAGGAAGAAGCAA+CGG | + | chr4_3:59960108-59960127 | None:intergenic | 40.0% |
| TTGGTAAACTAAGGAGCGAT+TGG | - | chr4_3:59960182-59960201 | Msa0652260:CDS | 40.0% | |
| AGGAGCGATTGGATTTATAG+TGG | - | chr4_3:59960193-59960212 | Msa0652260:CDS | 40.0% | |
| TTTCATCGGGTAGACTTAGT+AGG | + | chr4_3:59960250-59960269 | None:intergenic | 40.0% | |
| TCTACCCGATGAAACTTTGA+AGG | - | chr4_3:59960256-59960275 | Msa0652260:CDS | 40.0% | |
| !!! | CTGAGTTTGTTTTGGCTCAT+GGG | - | chr4_3:59960529-59960548 | Msa0652260:intron | 40.0% |
| TGCAAAAAGGATTCCTATGG+TGG | - | chr4_3:59960632-59960651 | Msa0652260:CDS | 40.0% | |
| ATTGTACCGTCACATTCATC+GGG | - | chr4_3:59958810-59958829 | Msa0652260:CDS | 40.0% | |
| ! | CTCTTTGTAGGTTTGGTTGT+TGG | - | chr4_3:59959023-59959042 | Msa0652260:intron | 40.0% |
| GTTTGGTTGTTGGATCAGTT+CGG | - | chr4_3:59959033-59959052 | Msa0652260:intron | 40.0% | |
| !! | GATAAGGTTGTTTTCCATCG+TGG | + | chr4_3:59959065-59959084 | None:intergenic | 40.0% |
| GATGGAAAACAACCTTATCC+CGG | - | chr4_3:59959066-59959085 | Msa0652260:intron | 40.0% | |
| ATACATGTTGAAATGGCACC+GGG | + | chr4_3:59959087-59959106 | None:intergenic | 40.0% | |
| CATACATGTTGAAATGGCAC+CGG | + | chr4_3:59959088-59959107 | None:intergenic | 40.0% | |
| AAAACATTGCAAAGACGGGT+GGG | - | chr4_3:59959185-59959204 | Msa0652260:intron | 40.0% | |
| ! | TTTCTAGGAGCAATTACCAG+TGG | - | chr4_3:59959292-59959311 | Msa0652260:intron | 40.0% |
| !! | GCTGTTTTCATAAGCCATCA+TGG | + | chr4_3:59959609-59959628 | None:intergenic | 40.0% |
| TAGGAAGAAGCAACGGAATA+TGG | + | chr4_3:59960101-59960120 | None:intergenic | 40.0% | |
| ATTCCGTTGCTTCTTCCTAA+AGG | - | chr4_3:59960102-59960121 | Msa0652260:intron | 40.0% | |
| ! | TAGCCTTTAGGAAGAAGCAA+CGG | + | chr4_3:59960108-59960127 | None:intergenic | 40.0% |
| TTGGTAAACTAAGGAGCGAT+TGG | - | chr4_3:59960182-59960201 | Msa0652260:CDS | 40.0% | |
| AGGAGCGATTGGATTTATAG+TGG | - | chr4_3:59960193-59960212 | Msa0652260:CDS | 40.0% | |
| TTTCATCGGGTAGACTTAGT+AGG | + | chr4_3:59960250-59960269 | None:intergenic | 40.0% | |
| TCTACCCGATGAAACTTTGA+AGG | - | chr4_3:59960256-59960275 | Msa0652260:CDS | 40.0% | |
| !!! | CTGAGTTTGTTTTGGCTCAT+GGG | - | chr4_3:59960529-59960548 | Msa0652260:intron | 40.0% |
| TGCAAAAAGGATTCCTATGG+TGG | - | chr4_3:59960632-59960651 | Msa0652260:CDS | 40.0% | |
| ATTCGACCCGATGAATGTGA+CGG | + | chr4_3:59958819-59958838 | None:intergenic | 45.0% | |
| ! | GTGAAGGTCTGAAACTGAAG+TGG | + | chr4_3:59958893-59958912 | None:intergenic | 45.0% |
| CTTCAGTTTCAGACCTTCAC+CGG | - | chr4_3:59958893-59958912 | Msa0652260:CDS | 45.0% | |
| !! | AAGGTTGTTTTCCATCGTGG+AGG | + | chr4_3:59959062-59959081 | None:intergenic | 45.0% |
| GAAAACATTGCAAAGACGGG+TGG | - | chr4_3:59959184-59959203 | Msa0652260:intron | 45.0% | |
| TTGATGAGTGAGTTCTCCAC+TGG | + | chr4_3:59959311-59959330 | None:intergenic | 45.0% | |
| CTTCCATAAGCTCTCCATGA+TGG | - | chr4_3:59959592-59959611 | Msa0652260:intron | 45.0% | |
| AAGCCATCATGGAGAGCTTA+TGG | + | chr4_3:59959598-59959617 | None:intergenic | 45.0% | |
| GTGATCGAATACACGACAAG+GGG | + | chr4_3:59959779-59959798 | None:intergenic | 45.0% | |
| GGTGATCGAATACACGACAA+GGG | + | chr4_3:59959780-59959799 | None:intergenic | 45.0% | |
| AGGTGATCGAATACACGACA+AGG | + | chr4_3:59959781-59959800 | None:intergenic | 45.0% | |
| TCTACAGATATCGGGGAAAG+TGG | - | chr4_3:59959846-59959865 | Msa0652260:intron | 45.0% | |
| TTATGCCACATGCCATTAGC+AGG | - | chr4_3:59959889-59959908 | Msa0652260:intron | 45.0% | |
| ATTCTCCTGCTAATGGCATG+TGG | + | chr4_3:59959897-59959916 | None:intergenic | 45.0% | |
| CAAACAGGAGAGATGATCCT+TGG | - | chr4_3:59959964-59959983 | Msa0652260:intron | 45.0% | |
| !! | TGATCCTTGGTTTGCATCGT+TGG | - | chr4_3:59959977-59959996 | Msa0652260:intron | 45.0% |
| !! | GATCCTTGGTTTGCATCGTT+GGG | - | chr4_3:59959978-59959997 | Msa0652260:intron | 45.0% |
| TTCATTTCACTTGGAGTGGC+AGG | - | chr4_3:59960012-59960031 | Msa0652260:intron | 45.0% | |
| TCATTTCACTTGGAGTGGCA+GGG | - | chr4_3:59960013-59960032 | Msa0652260:intron | 45.0% | |
| ATCGGGTAGACTTAGTAGGA+AGG | + | chr4_3:59960246-59960265 | None:intergenic | 45.0% | |
| !!! | GCTGAGTTTGTTTTGGCTCA+TGG | - | chr4_3:59960528-59960547 | Msa0652260:intron | 45.0% |
| CATTGAACGTGCATTCCCAT+TGG | + | chr4_3:59960574-59960593 | None:intergenic | 45.0% | |
| CGCTGCAAAAAGGATTCCTA+TGG | - | chr4_3:59960629-59960648 | Msa0652260:CDS | 45.0% | |
| ATTCGACCCGATGAATGTGA+CGG | + | chr4_3:59958819-59958838 | None:intergenic | 45.0% | |
| ! | GTGAAGGTCTGAAACTGAAG+TGG | + | chr4_3:59958893-59958912 | None:intergenic | 45.0% |
| CTTCAGTTTCAGACCTTCAC+CGG | - | chr4_3:59958893-59958912 | Msa0652260:CDS | 45.0% | |
| !! | AAGGTTGTTTTCCATCGTGG+AGG | + | chr4_3:59959062-59959081 | None:intergenic | 45.0% |
| GAAAACATTGCAAAGACGGG+TGG | - | chr4_3:59959184-59959203 | Msa0652260:intron | 45.0% | |
| TTGATGAGTGAGTTCTCCAC+TGG | + | chr4_3:59959311-59959330 | None:intergenic | 45.0% | |
| CTTCCATAAGCTCTCCATGA+TGG | - | chr4_3:59959592-59959611 | Msa0652260:intron | 45.0% | |
| AAGCCATCATGGAGAGCTTA+TGG | + | chr4_3:59959598-59959617 | None:intergenic | 45.0% | |
| GTGATCGAATACACGACAAG+GGG | + | chr4_3:59959779-59959798 | None:intergenic | 45.0% | |
| GGTGATCGAATACACGACAA+GGG | + | chr4_3:59959780-59959799 | None:intergenic | 45.0% | |
| AGGTGATCGAATACACGACA+AGG | + | chr4_3:59959781-59959800 | None:intergenic | 45.0% | |
| TCTACAGATATCGGGGAAAG+TGG | - | chr4_3:59959846-59959865 | Msa0652260:intron | 45.0% | |
| TTATGCCACATGCCATTAGC+AGG | - | chr4_3:59959889-59959908 | Msa0652260:intron | 45.0% | |
| ATTCTCCTGCTAATGGCATG+TGG | + | chr4_3:59959897-59959916 | None:intergenic | 45.0% | |
| CAAACAGGAGAGATGATCCT+TGG | - | chr4_3:59959964-59959983 | Msa0652260:intron | 45.0% | |
| !! | TGATCCTTGGTTTGCATCGT+TGG | - | chr4_3:59959977-59959996 | Msa0652260:intron | 45.0% |
| !! | GATCCTTGGTTTGCATCGTT+GGG | - | chr4_3:59959978-59959997 | Msa0652260:intron | 45.0% |
| TTCATTTCACTTGGAGTGGC+AGG | - | chr4_3:59960012-59960031 | Msa0652260:intron | 45.0% | |
| TCATTTCACTTGGAGTGGCA+GGG | - | chr4_3:59960013-59960032 | Msa0652260:intron | 45.0% | |
| ATCGGGTAGACTTAGTAGGA+AGG | + | chr4_3:59960246-59960265 | None:intergenic | 45.0% | |
| !!! | GCTGAGTTTGTTTTGGCTCA+TGG | - | chr4_3:59960528-59960547 | Msa0652260:intron | 45.0% |
| CATTGAACGTGCATTCCCAT+TGG | + | chr4_3:59960574-59960593 | None:intergenic | 45.0% | |
| CGCTGCAAAAAGGATTCCTA+TGG | - | chr4_3:59960629-59960648 | Msa0652260:CDS | 45.0% | |
| TGCCTTGAAACGGCGTGTTT+CGG | + | chr4_3:59958933-59958952 | None:intergenic | 50.0% | |
| ! | GTTGAAATGGCACCGGGATA+AGG | + | chr4_3:59959081-59959100 | None:intergenic | 50.0% |
| CAGATATCGGGGAAAGTGGT+AGG | - | chr4_3:59959850-59959869 | Msa0652260:intron | 50.0% | |
| CTTCCCAACGATGCAAACCA+AGG | + | chr4_3:59959984-59960003 | None:intergenic | 50.0% | |
| CATTTCACTTGGAGTGGCAG+GGG | - | chr4_3:59960014-59960033 | Msa0652260:intron | 50.0% | |
| CAGGGGAGCAATATCTCTTG+AGG | - | chr4_3:59960031-59960050 | Msa0652260:intron | 50.0% | |
| GCAATATCTCTTGAGGTGCG+TGG | - | chr4_3:59960038-59960057 | Msa0652260:intron | 50.0% | |
| TGGAGCTTTGCGCTGCAAAA+AGG | - | chr4_3:59960619-59960638 | Msa0652260:CDS | 50.0% | |
| !! | TCTGGATTGGCTACCACCAT+AGG | + | chr4_3:59960648-59960667 | None:intergenic | 50.0% |
| TGCCTTGAAACGGCGTGTTT+CGG | + | chr4_3:59958933-59958952 | None:intergenic | 50.0% | |
| ! | GTTGAAATGGCACCGGGATA+AGG | + | chr4_3:59959081-59959100 | None:intergenic | 50.0% |
| CAGATATCGGGGAAAGTGGT+AGG | - | chr4_3:59959850-59959869 | Msa0652260:intron | 50.0% | |
| CTTCCCAACGATGCAAACCA+AGG | + | chr4_3:59959984-59960003 | None:intergenic | 50.0% | |
| CATTTCACTTGGAGTGGCAG+GGG | - | chr4_3:59960014-59960033 | Msa0652260:intron | 50.0% | |
| CAGGGGAGCAATATCTCTTG+AGG | - | chr4_3:59960031-59960050 | Msa0652260:intron | 50.0% | |
| GCAATATCTCTTGAGGTGCG+TGG | - | chr4_3:59960038-59960057 | Msa0652260:intron | 50.0% | |
| TGGAGCTTTGCGCTGCAAAA+AGG | - | chr4_3:59960619-59960638 | Msa0652260:CDS | 50.0% | |
| !! | TCTGGATTGGCTACCACCAT+AGG | + | chr4_3:59960648-59960667 | None:intergenic | 50.0% |
| TGCAAAGACGGGTGGGAAGA+TGG | - | chr4_3:59959192-59959211 | Msa0652260:intron | 55.0% | |
| GCTCATGGGACTGAAGCCTT+GGG | - | chr4_3:59960543-59960562 | Msa0652260:CDS | 55.0% | |
| AAGCCTTGGGCGATGCCAAT+GGG | - | chr4_3:59960556-59960575 | Msa0652260:CDS | 55.0% | |
| ATTCCCATTGGCATCGCCCA+AGG | + | chr4_3:59960562-59960581 | None:intergenic | 55.0% | |
| AGAGACTTGCGTGTGATGCC+TGG | - | chr4_3:59960687-59960706 | Msa0652260:CDS | 55.0% | |
| TGCAAAGACGGGTGGGAAGA+TGG | - | chr4_3:59959192-59959211 | Msa0652260:intron | 55.0% | |
| GCTCATGGGACTGAAGCCTT+GGG | - | chr4_3:59960543-59960562 | Msa0652260:CDS | 55.0% | |
| AAGCCTTGGGCGATGCCAAT+GGG | - | chr4_3:59960556-59960575 | Msa0652260:CDS | 55.0% | |
| ATTCCCATTGGCATCGCCCA+AGG | + | chr4_3:59960562-59960581 | None:intergenic | 55.0% | |
| AGAGACTTGCGTGTGATGCC+TGG | - | chr4_3:59960687-59960706 | Msa0652260:CDS | 55.0% | |
| GAGTTGTCGGAGACCGGTGA+AGG | + | chr4_3:59958909-59958928 | None:intergenic | 60.0% | |
| TTCGGCGAGTTGTCGGAGAC+CGG | + | chr4_3:59958915-59958934 | None:intergenic | 60.0% | |
| GGCGTGTTTCGGCGAGTTGT+CGG | + | chr4_3:59958922-59958941 | None:intergenic | 60.0% | |
| CGCCGAAACACGCCGTTTCA+AGG | - | chr4_3:59958928-59958947 | Msa0652260:CDS | 60.0% | |
| CAGTTCGGAGTCCTCCACGA+TGG | - | chr4_3:59959048-59959067 | Msa0652260:intron | 60.0% | |
| GGGCTTGGACTTGCGAGTTG+TGG | - | chr4_3:59960491-59960510 | Msa0652260:intron | 60.0% | |
| GGCTCATGGGACTGAAGCCT+TGG | - | chr4_3:59960542-59960561 | Msa0652260:CDS | 60.0% | |
| GAAGCCTTGGGCGATGCCAA+TGG | - | chr4_3:59960555-59960574 | Msa0652260:CDS | 60.0% | |
| GAGTTGTCGGAGACCGGTGA+AGG | + | chr4_3:59958909-59958928 | None:intergenic | 60.0% | |
| TTCGGCGAGTTGTCGGAGAC+CGG | + | chr4_3:59958915-59958934 | None:intergenic | 60.0% | |
| GGCGTGTTTCGGCGAGTTGT+CGG | + | chr4_3:59958922-59958941 | None:intergenic | 60.0% | |
| CGCCGAAACACGCCGTTTCA+AGG | - | chr4_3:59958928-59958947 | Msa0652260:CDS | 60.0% | |
| CAGTTCGGAGTCCTCCACGA+TGG | - | chr4_3:59959048-59959067 | Msa0652260:intron | 60.0% | |
| GGGCTTGGACTTGCGAGTTG+TGG | - | chr4_3:59960491-59960510 | Msa0652260:intron | 60.0% | |
| GGCTCATGGGACTGAAGCCT+TGG | - | chr4_3:59960542-59960561 | Msa0652260:CDS | 60.0% | |
| GAAGCCTTGGGCGATGCCAA+TGG | - | chr4_3:59960555-59960574 | Msa0652260:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 59958734 | 59960749 | 59958734 | ID=Msa0652260;Name=Msa0652260 |
| chr4_3 | mRNA | 59958734 | 59960749 | 59958734 | ID=Msa0652260-mRNA-1;Parent=Msa0652260;Name=Msa0652260-mRNA-1;_AED=0.28;_eAED=0.28;_QI=0|1|0.6|1|1|1|5|0|261 |
| chr4_3 | exon | 59960534 | 59960749 | 59960534 | ID=Msa0652260-mRNA-1:exon:16206;Parent=Msa0652260-mRNA-1 |
| chr4_3 | exon | 59960381 | 59960450 | 59960381 | ID=Msa0652260-mRNA-1:exon:16205;Parent=Msa0652260-mRNA-1 |
| chr4_3 | exon | 59960142 | 59960301 | 59960142 | ID=Msa0652260-mRNA-1:exon:16204;Parent=Msa0652260-mRNA-1 |
| chr4_3 | exon | 59959431 | 59959512 | 59959431 | ID=Msa0652260-mRNA-1:exon:16203;Parent=Msa0652260-mRNA-1 |
| chr4_3 | exon | 59958734 | 59958991 | 59958734 | ID=Msa0652260-mRNA-1:exon:16202;Parent=Msa0652260-mRNA-1 |
| chr4_3 | CDS | 59960534 | 59960749 | 59960534 | ID=Msa0652260-mRNA-1:cds;Parent=Msa0652260-mRNA-1 |
| chr4_3 | CDS | 59960381 | 59960450 | 59960381 | ID=Msa0652260-mRNA-1:cds;Parent=Msa0652260-mRNA-1 |
| chr4_3 | CDS | 59960142 | 59960301 | 59960142 | ID=Msa0652260-mRNA-1:cds;Parent=Msa0652260-mRNA-1 |
| chr4_3 | CDS | 59959431 | 59959512 | 59959431 | ID=Msa0652260-mRNA-1:cds;Parent=Msa0652260-mRNA-1 |
| chr4_3 | CDS | 59958734 | 59958991 | 59958734 | ID=Msa0652260-mRNA-1:cds;Parent=Msa0652260-mRNA-1 |
| Gene Sequence |
| Protein sequence |
