Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694820 | XP_003608097.1 | 92.901 | 324 | 11 | 2 | 1 | 324 | 1 | 312 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694820 | G7JNP6 | 92.901 | 324 | 11 | 2 | 1 | 324 | 1 | 312 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652260 | Msa0694820 | 0.920575 | 1.075850e-87 | -8.615850e-47 |
| Msa0694820 | Msa0900320 | 0.803457 | 3.455001e-49 | -8.615850e-47 |
| Msa0694820 | Msa0965960 | 0.822908 | 1.841768e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694820 | MtrunA17_Chr4g0045821 | 88.103 | 311 | 31 | 1 | 14 | 324 | 32 | 336 | 0.0 | 531 |
| Msa0694820 | MtrunA17_Chr4g0045831 | 80.000 | 180 | 28 | 2 | 141 | 318 | 19 | 192 | 5.86e-93 | 275 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694820 | AT5G10460.1 | 66.776 | 304 | 95 | 1 | 21 | 324 | 9 | 306 | 8.30e-151 | 426 |
Find 77 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTCTCCATCATGATATTA+AGG | 0.201405 | 4_4:+64197526 | Msa0694820:CDS |
| TGAATGTGACGGTACAATTT+TGG | 0.214884 | 4_4:-64194527 | None:intergenic |
| GCTTCAACAGTTACATAATC+TGG | 0.272874 | 4_4:-64196385 | None:intergenic |
| GAACTTGGACTCGATGGTTT+TGG | 0.274227 | 4_4:+64197605 | Msa0694820:CDS |
| CTCTTTGTAGGTTTGGTTGT+TGG | 0.293904 | 4_4:+64194745 | Msa0694820:intron |
| TGGAGCTTTGCGCTGCAAAA+AGG | 0.317353 | 4_4:+64196341 | Msa0694820:CDS |
| GGCTCATGGGACTGAAGCCT+TGG | 0.350841 | 4_4:+64196264 | Msa0694820:CDS |
| TTCATTTCACTTGGAGTGGC+AGG | 0.374055 | 4_4:+64195734 | Msa0694820:CDS |
| AATGGTTTCATCACCTCATC+AGG | 0.382249 | 4_4:-64196703 | None:intergenic |
| TAATAACATACATGTTGAAA+TGG | 0.390410 | 4_4:-64194813 | None:intergenic |
| TGCCTTGAAACGGCGTGTTT+CGG | 0.395429 | 4_4:-64194652 | None:intergenic |
| GGGATTCATGCAACTGAACT+TGG | 0.398007 | 4_4:+64197590 | Msa0694820:CDS |
| TGAAGAAGCTGAGTTTGTTT+TGG | 0.398598 | 4_4:+64196243 | Msa0694820:CDS |
| CGCCGAAACACGCCGTTTCA+AGG | 0.415686 | 4_4:+64194650 | Msa0694820:CDS |
| CAAACAGGAGAGATGATCCT+TGG | 0.430300 | 4_4:+64195686 | Msa0694820:intron |
| TGATCCTTGGTTTGCATCGT+TGG | 0.434706 | 4_4:+64195699 | Msa0694820:CDS |
| GTTGAAATGGCACCGGGATA+AGG | 0.442443 | 4_4:-64194800 | None:intergenic |
| CTTCAGTTTCAGACCTTCAC+CGG | 0.444117 | 4_4:+64194615 | Msa0694820:CDS |
| AATTGTACCGTCACATTCAT+CGG | 0.457739 | 4_4:+64194531 | Msa0694820:five_prime_UTR |
| GGCGTGTTTCGGCGAGTTGT+CGG | 0.462642 | 4_4:-64194641 | None:intergenic |
| AACAGTTACATAATCTGGAT+TGG | 0.467937 | 4_4:-64196380 | None:intergenic |
| GTTTGGTTGTTGGATCAGTT+CGG | 0.470315 | 4_4:+64194755 | Msa0694820:CDS |
| GCTCATGGGACTGAAGCCTT+GGG | 0.470652 | 4_4:+64196265 | Msa0694820:CDS |
| TCTCTCCATCATGATATTAA+GGG | 0.474595 | 4_4:+64197527 | Msa0694820:CDS |
| AAGCCTTGGGCGATGCCAAT+GGG | 0.482602 | 4_4:+64196278 | Msa0694820:CDS |
| TGCAAAGACGGGTGGGAAGA+TGG | 0.483594 | 4_4:+64194914 | Msa0694820:CDS |
| AGCTTGGCGGTGAAGTGAAA+TGG | 0.484831 | 4_4:+64196672 | Msa0694820:CDS |
| CATTTCACTTGGAGTGGCAG+GGG | 0.489985 | 4_4:+64195736 | Msa0694820:CDS |
| GGGCTTGGACTTGCGAGTTG+TGG | 0.493270 | 4_4:+64196213 | Msa0694820:intron |
| CATTGAACGTGCATTCCCAT+TGG | 0.498390 | 4_4:-64196293 | None:intergenic |
| GATCCTTGGTTTGCATCGTT+GGG | 0.501264 | 4_4:+64195700 | Msa0694820:CDS |
| ATTAAGGGTGCTAATGCTGC+TGG | 0.504655 | 4_4:+64197542 | Msa0694820:CDS |
| GATCTTGTATTCATTTCACT+TGG | 0.513220 | 4_4:+64195725 | Msa0694820:CDS |
| TTGTTCTACCACGTGAATGC+GGG | 0.519095 | 4_4:-64197698 | None:intergenic |
| GCAGCTAAATATGAAAAGCT+TGG | 0.520009 | 4_4:+64196656 | Msa0694820:CDS |
| GAAGCCTTGGGCGATGCCAA+TGG | 0.523322 | 4_4:+64196277 | Msa0694820:CDS |
| AGTAGAAAACATTGCAAAGA+CGG | 0.530288 | 4_4:+64194902 | Msa0694820:intron |
| GAGTTGTCGGAGACCGGTGA+AGG | 0.532249 | 4_4:-64194628 | None:intergenic |
| GCAACTGAACTTGGACTCGA+TGG | 0.533902 | 4_4:+64197599 | Msa0694820:CDS |
| GGAAACATCTGTACCGGCCA+TGG | 0.534358 | 4_4:-64197483 | None:intergenic |
| AGAGACTTGCGTGTGATGCC+TGG | 0.535025 | 4_4:+64196409 | Msa0694820:CDS |
| TCTGGATTGGCTACCACCAT+AGG | 0.537526 | 4_4:-64196367 | None:intergenic |
| TTCGGCGAGTTGTCGGAGAC+CGG | 0.538914 | 4_4:-64194634 | None:intergenic |
| ATTCCCATTGGCATCGCCCA+AGG | 0.544337 | 4_4:-64196281 | None:intergenic |
| TAGAGAGAAATGCCTTGAAA+CGG | 0.546547 | 4_4:-64194662 | None:intergenic |
| ATTGTACCGTCACATTCATC+GGG | 0.550538 | 4_4:+64194532 | Msa0694820:five_prime_UTR |
| CATACATGTTGAAATGGCAC+CGG | 0.562271 | 4_4:-64194807 | None:intergenic |
| ATTGTTCTACCACGTGAATG+CGG | 0.562774 | 4_4:-64197699 | None:intergenic |
| TGTATTCATTTCACTTGGAG+TGG | 0.565374 | 4_4:+64195730 | Msa0694820:CDS |
| AATGCGGGCAACACATAGGA+TGG | 0.566778 | 4_4:-64197683 | None:intergenic |
| TTGATGAGTGAGTTCTCCAC+TGG | 0.576232 | 4_4:-64195030 | None:intergenic |
| GTAGAAAACATTGCAAAGAC+GGG | 0.576844 | 4_4:+64194903 | Msa0694820:intron |
| GATAATATACAAGTCAGCTA+TGG | 0.576898 | 4_4:+64197460 | Msa0694820:CDS |
| TCATTTCACTTGGAGTGGCA+GGG | 0.578878 | 4_4:+64195735 | Msa0694820:CDS |
| GCTAAATATGAAAAGCTTGG+CGG | 0.581726 | 4_4:+64196659 | Msa0694820:CDS |
| CGTGAATGCGGGCAACACAT+AGG | 0.584164 | 4_4:-64197687 | None:intergenic |
| GAAAACATTGCAAAGACGGG+TGG | 0.587859 | 4_4:+64194906 | Msa0694820:CDS |
| TGTTTCCGACTGTATTGCTG+TGG | 0.590268 | 4_4:+64197499 | Msa0694820:CDS |
| ATACATGTTGAAATGGCACC+GGG | 0.592097 | 4_4:-64194806 | None:intergenic |
| AAGTCAGCTATGGCCATGGC+CGG | 0.593671 | 4_4:+64197470 | Msa0694820:CDS |
| ACAGTCGGAAACATCTGTAC+CGG | 0.594740 | 4_4:-64197489 | None:intergenic |
| CAGGGGAGCAATATCTCTTG+AGG | 0.601308 | 4_4:+64195753 | Msa0694820:CDS |
| TCACTCATCAATACTTACAA+AGG | 0.607161 | 4_4:+64195042 | Msa0694820:CDS |
| TTTCTAGGAGCAATTACCAG+TGG | 0.611343 | 4_4:+64195014 | Msa0694820:CDS |
| TAGCACCCTTAATATCATGA+TGG | 0.612590 | 4_4:-64197532 | None:intergenic |
| ATGTGTTGCCCGCATTCACG+TGG | 0.621579 | 4_4:+64197690 | Msa0694820:CDS |
| GTGAAGGTCTGAAACTGAAG+TGG | 0.623751 | 4_4:-64194612 | None:intergenic |
| ATACAAGTCAGCTATGGCCA+TGG | 0.624242 | 4_4:+64197466 | Msa0694820:CDS |
| AAAACATTGCAAAGACGGGT+GGG | 0.636496 | 4_4:+64194907 | Msa0694820:CDS |
| ATTCGACCCGATGAATGTGA+CGG | 0.637130 | 4_4:-64194538 | None:intergenic |
| GATGGAAAACAACCTTATCC+CGG | 0.637366 | 4_4:+64194788 | Msa0694820:CDS |
| CTTCCCAACGATGCAAACCA+AGG | 0.648217 | 4_4:-64195703 | None:intergenic |
| CAGTTCGGAGTCCTCCACGA+TGG | 0.655258 | 4_4:+64194770 | Msa0694820:CDS |
| AATGGATGGCAAACCTGATG+AGG | 0.655928 | 4_4:+64196690 | Msa0694820:CDS |
| GTTTCCGACTGTATTGCTGT+GGG | 0.657163 | 4_4:+64197500 | Msa0694820:CDS |
| ATCACCCACAGCAATACAGT+CGG | 0.657241 | 4_4:-64197504 | None:intergenic |
| TGGCGGTGAAGTGAAATGGA+TGG | 0.683331 | 4_4:+64196676 | Msa0694820:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAACAAAAAAGAAAATTT+AGG | - | chr4_4:64194874-64194893 | None:intergenic | 10.0% |
| !! | TCAAATATAAAAAAAAATAC+AGG | + | chr4_4:64196097-64196116 | Msa0694820:intron | 10.0% |
| !! | CAAATATAAAAAAAAATACA+GGG | + | chr4_4:64196098-64196117 | Msa0694820:intron | 10.0% |
| !! | ATTCAAAGAATTGAAAAATT+TGG | + | chr4_4:64196002-64196021 | Msa0694820:intron | 15.0% |
| !! | TTGGTTTAAATTATCTAAAA+CGG | + | chr4_4:64197100-64197119 | Msa0694820:intron | 15.0% |
| !! | ATGATCGTATATAAATAAAT+AGG | - | chr4_4:64197346-64197365 | None:intergenic | 15.0% |
| !! | TAATAACATACATGTTGAAA+TGG | - | chr4_4:64194816-64194835 | None:intergenic | 20.0% |
| !! | GTTATTATGTCTTATCTTTA+TGG | + | chr4_4:64194829-64194848 | Msa0694820:intron | 20.0% |
| !! | TCTCAACTAAAAAATACATA+CGG | - | chr4_4:64195533-64195552 | None:intergenic | 20.0% |
| !!! | ATAATATCTGTTTTTCAAAC+AGG | + | chr4_4:64195671-64195690 | Msa0694820:intron | 20.0% |
| !!! | TTTTCTTGTGCAATATAAAA+TGG | + | chr4_4:64195857-64195876 | Msa0694820:intron | 20.0% |
| !! | ATTCAATTCAAGTCAAATTA+TGG | + | chr4_4:64196074-64196093 | Msa0694820:intron | 20.0% |
| !!! | AAGTTTTCATTTATATGACA+TGG | + | chr4_4:64196509-64196528 | Msa0694820:intron | 20.0% |
| !! | AGTAAGTAATTCTCATTTAT+TGG | + | chr4_4:64197081-64197100 | Msa0694820:intron | 20.0% |
| !!! | TGTAGAATTTGTTTTAGATT+GGG | - | chr4_4:64197241-64197260 | None:intergenic | 20.0% |
| !!! | ATGTAGAATTTGTTTTAGAT+TGG | - | chr4_4:64197242-64197261 | None:intergenic | 20.0% |
| ! | TTATGTCTTATCTTTATGGT+TGG | + | chr4_4:64194833-64194852 | Msa0694820:intron | 25.0% |
| ! | CTAAGAAACAGAAATTATGT+TGG | - | chr4_4:64195076-64195095 | None:intergenic | 25.0% |
| !! | GAAAATAACATTTAGCCTTT+AGG | - | chr4_4:64195842-64195861 | None:intergenic | 25.0% |
| ! | ATATAAAATGGCATGATTCT+TGG | + | chr4_4:64195869-64195888 | Msa0694820:intron | 25.0% |
| ! | TATAAAATGGCATGATTCTT+GGG | + | chr4_4:64195870-64195889 | Msa0694820:intron | 25.0% |
| ! | AACTAATTATTCTGCTTACA+AGG | + | chr4_4:64195938-64195957 | Msa0694820:intron | 25.0% |
| ! | ACAATCAGTTATCTATTGTT+TGG | - | chr4_4:64196034-64196053 | None:intergenic | 25.0% |
| ! | AAACAATAGATAACTGATTG+TGG | + | chr4_4:64196033-64196052 | Msa0694820:intron | 25.0% |
| ! | CTATTGATGCATATTATCTT+TGG | - | chr4_4:64196157-64196176 | None:intergenic | 25.0% |
| ! | CATACAAATAACTTTGTCTA+GGG | + | chr4_4:64196193-64196212 | Msa0694820:intron | 25.0% |
| ! | TGAAGACCTTGAAAAAATAT+TGG | + | chr4_4:64196321-64196340 | Msa0694820:CDS | 25.0% |
| !!! | AAAGCTCCAATATTTTTTCA+AGG | - | chr4_4:64196330-64196349 | None:intergenic | 25.0% |
| ! | GGATTTATATCACATAGAAA+TGG | - | chr4_4:64196724-64196743 | None:intergenic | 25.0% |
| ! | AGAGAGAACAATTATCAAAA+TGG | - | chr4_4:64196745-64196764 | None:intergenic | 25.0% |
| ! | TGATGTTTAATCTTGTAGAA+AGG | - | chr4_4:64196918-64196937 | None:intergenic | 25.0% |
| !! | ATCCAATCAATTTTTATCAC+TGG | + | chr4_4:64197566-64197585 | Msa0694820:CDS | 25.0% |
| !! | AATCAATTTTTATCACTGGA+GGG | + | chr4_4:64197570-64197589 | Msa0694820:CDS | 25.0% |
| GAAGAAGAAGAAGAACATTT+GGG | - | chr4_4:64194573-64194592 | None:intergenic | 30.0% | |
| AGAAGAAGAAGAAGAACATT+TGG | - | chr4_4:64194574-64194593 | None:intergenic | 30.0% | |
| GTTATGTTGTTACTCTTTGT+AGG | + | chr4_4:64194733-64194752 | Msa0694820:intron | 30.0% | |
| AGTAGAAAACATTGCAAAGA+CGG | + | chr4_4:64194902-64194921 | Msa0694820:intron | 30.0% | |
| CTTGAAAAAGTCAAAAGTCT+TGG | + | chr4_4:64194975-64194994 | Msa0694820:CDS | 30.0% | |
| ! | TTTGATGCTTCTCTTTTTCT+AGG | + | chr4_4:64194999-64195018 | Msa0694820:CDS | 30.0% |
| TCACTCATCAATACTTACAA+AGG | + | chr4_4:64195042-64195061 | Msa0694820:CDS | 30.0% | |
| TAAACATTTGTGAGAGCTTA+TGG | + | chr4_4:64195183-64195202 | Msa0694820:intron | 30.0% | |
| TATGAAAACAGCTTATGACA+TGG | + | chr4_4:64195270-64195289 | Msa0694820:intron | 30.0% | |
| ! | GAGACACTATAGTTCTATTT+GGG | - | chr4_4:64195438-64195457 | None:intergenic | 30.0% |
| ! | TGAGACACTATAGTTCTATT+TGG | - | chr4_4:64195439-64195458 | None:intergenic | 30.0% |
| AAAATACATACGGATGAAAC+AGG | - | chr4_4:64195523-64195542 | None:intergenic | 30.0% | |
| !! | TATCTGTAGAATTTGTTGCA+CGG | - | chr4_4:64195558-64195577 | None:intergenic | 30.0% |
| GCAACAAATTCTACAGATAT+CGG | + | chr4_4:64195559-64195578 | Msa0694820:intron | 30.0% | |
| CAACAAATTCTACAGATATC+GGG | + | chr4_4:64195560-64195579 | Msa0694820:intron | 30.0% | |
| AACAAATTCTACAGATATCG+GGG | + | chr4_4:64195561-64195580 | Msa0694820:intron | 30.0% | |
| TAAGAAAATTCTCCTGCTAA+TGG | - | chr4_4:64195626-64195645 | None:intergenic | 30.0% | |
| GATCTTGTATTCATTTCACT+TGG | + | chr4_4:64195725-64195744 | Msa0694820:CDS | 30.0% | |
| ATAGTTGTCTTGGTAAACTA+AGG | + | chr4_4:64195895-64195914 | Msa0694820:intron | 30.0% | |
| AATACCTTCAAAGTTTCATC+GGG | - | chr4_4:64195985-64196004 | None:intergenic | 30.0% | |
| GAATACCTTCAAAGTTTCAT+CGG | - | chr4_4:64195986-64196005 | None:intergenic | 30.0% | |
| GCATACAAATAACTTTGTCT+AGG | + | chr4_4:64196192-64196211 | Msa0694820:intron | 30.0% | |
| AACAGTTACATAATCTGGAT+TGG | - | chr4_4:64196383-64196402 | None:intergenic | 30.0% | |
| AGTACACACAATTTGGTATA+AGG | - | chr4_4:64196615-64196634 | None:intergenic | 30.0% | |
| AGTATGAAGTACACACAATT+TGG | - | chr4_4:64196622-64196641 | None:intergenic | 30.0% | |
| GTGTGTACTTCATACTTATT+AGG | + | chr4_4:64196626-64196645 | Msa0694820:intron | 30.0% | |
| TTGTTCACAATTGTAATTGC+AGG | - | chr4_4:64196977-64196996 | None:intergenic | 30.0% | |
| ACTTACAACTTAGTTTAGCT+TGG | - | chr4_4:64197054-64197073 | None:intergenic | 30.0% | |
| TCTACATAATTCTTTGTCCA+TGG | + | chr4_4:64197255-64197274 | Msa0694820:intron | 30.0% | |
| GAGAATATATTTCAATGAGC+TGG | - | chr4_4:64197292-64197311 | None:intergenic | 30.0% | |
| CATAATGATTAACATCTTCG+TGG | + | chr4_4:64197363-64197382 | Msa0694820:intron | 30.0% | |
| GATAATATACAAGTCAGCTA+TGG | + | chr4_4:64197460-64197479 | Msa0694820:CDS | 30.0% | |
| TTCTCTCCATCATGATATTA+AGG | + | chr4_4:64197526-64197545 | Msa0694820:CDS | 30.0% | |
| TCTCTCCATCATGATATTAA+GGG | + | chr4_4:64197527-64197546 | Msa0694820:CDS | 30.0% | |
| CTCCAGTGATAAAAATTGAT+TGG | - | chr4_4:64197571-64197590 | None:intergenic | 30.0% | |
| ! | CAATCAATTTTTATCACTGG+AGG | + | chr4_4:64197569-64197588 | Msa0694820:CDS | 30.0% |
| ! | GAATGTGACGGTACAATTTT+GGG | - | chr4_4:64194529-64194548 | None:intergenic | 35.0% |
| ! | TGAATGTGACGGTACAATTT+TGG | - | chr4_4:64194530-64194549 | None:intergenic | 35.0% |
| AATTGTACCGTCACATTCAT+CGG | + | chr4_4:64194531-64194550 | Msa0694820:five_prime_UTR | 35.0% | |
| TAGAGAGAAATGCCTTGAAA+CGG | - | chr4_4:64194665-64194684 | None:intergenic | 35.0% | |
| GTTGTTACTCTTTGTAGGTT+TGG | + | chr4_4:64194738-64194757 | Msa0694820:intron | 35.0% | |
| GTAGAAAACATTGCAAAGAC+GGG | + | chr4_4:64194903-64194922 | Msa0694820:intron | 35.0% | |
| AACGAAACAGAAAAAATGCG+TGG | - | chr4_4:64195120-64195139 | None:intergenic | 35.0% | |
| TGTTTCGTTTACGTTCTGTT+TGG | + | chr4_4:64195131-64195150 | Msa0694820:intron | 35.0% | |
| GTAAGCTGAAAACAGCTTAT+GGG | - | chr4_4:64195226-64195245 | None:intergenic | 35.0% | |
| AGTAAGCTGAAAACAGCTTA+TGG | - | chr4_4:64195227-64195246 | None:intergenic | 35.0% | |
| AGTAAGCTGAAAACAGTGTA+TGG | - | chr4_4:64195296-64195315 | None:intergenic | 35.0% | |
| !! | ATCTGTAGAATTTGTTGCAC+GGG | - | chr4_4:64195557-64195576 | None:intergenic | 35.0% |
| TGTATTCATTTCACTTGGAG+TGG | + | chr4_4:64195730-64195749 | Msa0694820:CDS | 35.0% | |
| TTCTTGGGTAATAGTTGTCT+TGG | + | chr4_4:64195885-64195904 | Msa0694820:intron | 35.0% | |
| CAATAGATAACTGATTGTGG+TGG | + | chr4_4:64196036-64196055 | Msa0694820:intron | 35.0% | |
| ! | AAATAACTTTGTCTAGGGCT+TGG | + | chr4_4:64196198-64196217 | Msa0694820:intron | 35.0% |
| !! | TGAAGAAGCTGAGTTTGTTT+TGG | + | chr4_4:64196243-64196262 | Msa0694820:CDS | 35.0% |
| GCTTCAACAGTTACATAATC+TGG | - | chr4_4:64196388-64196407 | None:intergenic | 35.0% | |
| GAAGATAAAGCAAATTCACC+AGG | - | chr4_4:64196430-64196449 | None:intergenic | 35.0% | |
| GAAAACTTATGCTGCAACTT+TGG | - | chr4_4:64196497-64196516 | None:intergenic | 35.0% | |
| GGTATAAGGTGAAACTTGAT+AGG | - | chr4_4:64196601-64196620 | None:intergenic | 35.0% | |
| GCAGCTAAATATGAAAAGCT+TGG | + | chr4_4:64196656-64196675 | Msa0694820:CDS | 35.0% | |
| GCTAAATATGAAAAGCTTGG+CGG | + | chr4_4:64196659-64196678 | Msa0694820:CDS | 35.0% | |
| ACTCCATTCTATTAGTACCT+AGG | + | chr4_4:64196780-64196799 | Msa0694820:intron | 35.0% | |
| ACATCATGTTCAATCCTTCA+AGG | + | chr4_4:64196932-64196951 | Msa0694820:intron | 35.0% | |
| GCTAACATAGAAATCCTTGA+AGG | - | chr4_4:64196949-64196968 | None:intergenic | 35.0% | |
| GAAACTAATCCTCAAGTCAA+GGG | - | chr4_4:64197197-64197216 | None:intergenic | 35.0% | |
| TGAAACTAATCCTCAAGTCA+AGG | - | chr4_4:64197198-64197217 | None:intergenic | 35.0% | |
| TAGCACCCTTAATATCATGA+TGG | - | chr4_4:64197535-64197554 | None:intergenic | 35.0% | |
| ATTGTACCGTCACATTCATC+GGG | + | chr4_4:64194532-64194551 | Msa0694820:five_prime_UTR | 40.0% | |
| ! | CTCTTTGTAGGTTTGGTTGT+TGG | + | chr4_4:64194745-64194764 | Msa0694820:intron | 40.0% |
| GTTTGGTTGTTGGATCAGTT+CGG | + | chr4_4:64194755-64194774 | Msa0694820:CDS | 40.0% | |
| !! | GATAAGGTTGTTTTCCATCG+TGG | - | chr4_4:64194787-64194806 | None:intergenic | 40.0% |
| GATGGAAAACAACCTTATCC+CGG | + | chr4_4:64194788-64194807 | Msa0694820:CDS | 40.0% | |
| ATACATGTTGAAATGGCACC+GGG | - | chr4_4:64194809-64194828 | None:intergenic | 40.0% | |
| CATACATGTTGAAATGGCAC+CGG | - | chr4_4:64194810-64194829 | None:intergenic | 40.0% | |
| AAAACATTGCAAAGACGGGT+GGG | + | chr4_4:64194907-64194926 | Msa0694820:CDS | 40.0% | |
| ! | TTTCTAGGAGCAATTACCAG+TGG | + | chr4_4:64195014-64195033 | Msa0694820:CDS | 40.0% |
| !! | GCTGTTTTCATAAGCCATCA+TGG | - | chr4_4:64195331-64195350 | None:intergenic | 40.0% |
| TAGGAAGAAGCAACGGAATA+TGG | - | chr4_4:64195823-64195842 | None:intergenic | 40.0% | |
| ATTCCGTTGCTTCTTCCTAA+AGG | + | chr4_4:64195824-64195843 | Msa0694820:intron | 40.0% | |
| ! | TAGCCTTTAGGAAGAAGCAA+CGG | - | chr4_4:64195830-64195849 | None:intergenic | 40.0% |
| TTGGTAAACTAAGGAGCGAT+TGG | + | chr4_4:64195904-64195923 | Msa0694820:intron | 40.0% | |
| AGGAGCGATTGGATTTATAG+TGG | + | chr4_4:64195915-64195934 | Msa0694820:intron | 40.0% | |
| TTTCATCGGGTAGACTTAGT+AGG | - | chr4_4:64195972-64195991 | None:intergenic | 40.0% | |
| TCTACCCGATGAAACTTTGA+AGG | + | chr4_4:64195978-64195997 | Msa0694820:intron | 40.0% | |
| !!! | CTGAGTTTGTTTTGGCTCAT+GGG | + | chr4_4:64196251-64196270 | Msa0694820:CDS | 40.0% |
| TGCAAAAAGGATTCCTATGG+TGG | + | chr4_4:64196354-64196373 | Msa0694820:CDS | 40.0% | |
| AATGGTTTCATCACCTCATC+AGG | - | chr4_4:64196706-64196725 | None:intergenic | 40.0% | |
| CAGCCTAGGTACTAATAGAA+TGG | - | chr4_4:64196786-64196805 | None:intergenic | 40.0% | |
| CATGCGTACAAGATACAAGT+AGG | + | chr4_4:64196815-64196834 | Msa0694820:intron | 40.0% | |
| GTTAGGTAAAGTCATCACTC+CGG | - | chr4_4:64197169-64197188 | None:intergenic | 40.0% | |
| ATTCGACCCGATGAATGTGA+CGG | - | chr4_4:64194541-64194560 | None:intergenic | 45.0% | |
| ! | GTGAAGGTCTGAAACTGAAG+TGG | - | chr4_4:64194615-64194634 | None:intergenic | 45.0% |
| CTTCAGTTTCAGACCTTCAC+CGG | + | chr4_4:64194615-64194634 | Msa0694820:CDS | 45.0% | |
| !! | AAGGTTGTTTTCCATCGTGG+AGG | - | chr4_4:64194784-64194803 | None:intergenic | 45.0% |
| GAAAACATTGCAAAGACGGG+TGG | + | chr4_4:64194906-64194925 | Msa0694820:CDS | 45.0% | |
| TTGATGAGTGAGTTCTCCAC+TGG | - | chr4_4:64195033-64195052 | None:intergenic | 45.0% | |
| CTTCCATAAGCTCTCCATGA+TGG | + | chr4_4:64195314-64195333 | Msa0694820:intron | 45.0% | |
| AAGCCATCATGGAGAGCTTA+TGG | - | chr4_4:64195320-64195339 | None:intergenic | 45.0% | |
| GTGATCGAATACACGACAAG+GGG | - | chr4_4:64195501-64195520 | None:intergenic | 45.0% | |
| GGTGATCGAATACACGACAA+GGG | - | chr4_4:64195502-64195521 | None:intergenic | 45.0% | |
| AGGTGATCGAATACACGACA+AGG | - | chr4_4:64195503-64195522 | None:intergenic | 45.0% | |
| TCTACAGATATCGGGGAAAG+TGG | + | chr4_4:64195568-64195587 | Msa0694820:intron | 45.0% | |
| TTATGCCACATGCCATTAGC+AGG | + | chr4_4:64195611-64195630 | Msa0694820:intron | 45.0% | |
| ATTCTCCTGCTAATGGCATG+TGG | - | chr4_4:64195619-64195638 | None:intergenic | 45.0% | |
| CAAACAGGAGAGATGATCCT+TGG | + | chr4_4:64195686-64195705 | Msa0694820:intron | 45.0% | |
| !! | TGATCCTTGGTTTGCATCGT+TGG | + | chr4_4:64195699-64195718 | Msa0694820:CDS | 45.0% |
| !! | GATCCTTGGTTTGCATCGTT+GGG | + | chr4_4:64195700-64195719 | Msa0694820:CDS | 45.0% |
| TTCATTTCACTTGGAGTGGC+AGG | + | chr4_4:64195734-64195753 | Msa0694820:CDS | 45.0% | |
| TCATTTCACTTGGAGTGGCA+GGG | + | chr4_4:64195735-64195754 | Msa0694820:CDS | 45.0% | |
| ATCGGGTAGACTTAGTAGGA+AGG | - | chr4_4:64195968-64195987 | None:intergenic | 45.0% | |
| !!! | GCTGAGTTTGTTTTGGCTCA+TGG | + | chr4_4:64196250-64196269 | Msa0694820:CDS | 45.0% |
| CATTGAACGTGCATTCCCAT+TGG | - | chr4_4:64196296-64196315 | None:intergenic | 45.0% | |
| CGCTGCAAAAAGGATTCCTA+TGG | + | chr4_4:64196351-64196370 | Msa0694820:CDS | 45.0% | |
| AATGGATGGCAAACCTGATG+AGG | + | chr4_4:64196690-64196709 | Msa0694820:CDS | 45.0% | |
| GCATGTAATCTTAGCAGCCT+AGG | - | chr4_4:64196800-64196819 | None:intergenic | 45.0% | |
| TCGTGAGTTTCTTCCCTAGT+TGG | + | chr4_4:64196861-64196880 | Msa0694820:intron | 45.0% | |
| CCAAATGAGCAAGCCAACTA+GGG | - | chr4_4:64196877-64196896 | None:intergenic | 45.0% | |
| !! | GAATTCTAGAGTTGCGACTC+CGG | + | chr4_4:64197147-64197166 | Msa0694820:intron | 45.0% |
| TCAAGTCAAGGGTGGTAGTT+AGG | - | chr4_4:64197186-64197205 | None:intergenic | 45.0% | |
| ! | TAACTACCACCCTTGACTTG+AGG | + | chr4_4:64197185-64197204 | Msa0694820:intron | 45.0% |
| ACTAATCCTCAAGTCAAGGG+TGG | - | chr4_4:64197194-64197213 | None:intergenic | 45.0% | |
| TTTAGATTGGGAAGACGCAC+AGG | - | chr4_4:64197229-64197248 | None:intergenic | 45.0% | |
| ATACAAGTCAGCTATGGCCA+TGG | + | chr4_4:64197466-64197485 | Msa0694820:CDS | 45.0% | |
| ACAGTCGGAAACATCTGTAC+CGG | - | chr4_4:64197492-64197511 | None:intergenic | 45.0% | |
| TGTTTCCGACTGTATTGCTG+TGG | + | chr4_4:64197499-64197518 | Msa0694820:CDS | 45.0% | |
| GTTTCCGACTGTATTGCTGT+GGG | + | chr4_4:64197500-64197519 | Msa0694820:CDS | 45.0% | |
| ATCACCCACAGCAATACAGT+CGG | - | chr4_4:64197507-64197526 | None:intergenic | 45.0% | |
| !! | ATTAAGGGTGCTAATGCTGC+TGG | + | chr4_4:64197542-64197561 | Msa0694820:CDS | 45.0% |
| GGGATTCATGCAACTGAACT+TGG | + | chr4_4:64197590-64197609 | Msa0694820:CDS | 45.0% | |
| ! | GAACTTGGACTCGATGGTTT+TGG | + | chr4_4:64197605-64197624 | Msa0694820:CDS | 45.0% |
| TGCCTTGAAACGGCGTGTTT+CGG | - | chr4_4:64194655-64194674 | None:intergenic | 50.0% | |
| ! | GTTGAAATGGCACCGGGATA+AGG | - | chr4_4:64194803-64194822 | None:intergenic | 50.0% |
| CAGATATCGGGGAAAGTGGT+AGG | + | chr4_4:64195572-64195591 | Msa0694820:intron | 50.0% | |
| CTTCCCAACGATGCAAACCA+AGG | - | chr4_4:64195706-64195725 | None:intergenic | 50.0% | |
| CATTTCACTTGGAGTGGCAG+GGG | + | chr4_4:64195736-64195755 | Msa0694820:CDS | 50.0% | |
| CAGGGGAGCAATATCTCTTG+AGG | + | chr4_4:64195753-64195772 | Msa0694820:CDS | 50.0% | |
| GCAATATCTCTTGAGGTGCG+TGG | + | chr4_4:64195760-64195779 | Msa0694820:intron | 50.0% | |
| TGGAGCTTTGCGCTGCAAAA+AGG | + | chr4_4:64196341-64196360 | Msa0694820:CDS | 50.0% | |
| !! | TCTGGATTGGCTACCACCAT+AGG | - | chr4_4:64196370-64196389 | None:intergenic | 50.0% |
| AGCTTGGCGGTGAAGTGAAA+TGG | + | chr4_4:64196672-64196691 | Msa0694820:CDS | 50.0% | |
| TGGCGGTGAAGTGAAATGGA+TGG | + | chr4_4:64196676-64196695 | Msa0694820:CDS | 50.0% | |
| !! | CCCTAGTTGGCTTGCTCATT+TGG | + | chr4_4:64196874-64196893 | Msa0694820:intron | 50.0% |
| GCCAAATGAGCAAGCCAACT+AGG | - | chr4_4:64196878-64196897 | None:intergenic | 50.0% | |
| GCTTGCTCATTTGGCACACA+AGG | + | chr4_4:64196883-64196902 | Msa0694820:intron | 50.0% | |
| AGCTGGATCATTGCAAGCCA+TGG | - | chr4_4:64197275-64197294 | None:intergenic | 50.0% | |
| GCAACTGAACTTGGACTCGA+TGG | + | chr4_4:64197599-64197618 | Msa0694820:CDS | 50.0% | |
| AATGCGGGCAACACATAGGA+TGG | - | chr4_4:64197686-64197705 | None:intergenic | 50.0% | |
| TGCAAAGACGGGTGGGAAGA+TGG | + | chr4_4:64194914-64194933 | Msa0694820:CDS | 55.0% | |
| GCTCATGGGACTGAAGCCTT+GGG | + | chr4_4:64196265-64196284 | Msa0694820:CDS | 55.0% | |
| AAGCCTTGGGCGATGCCAAT+GGG | + | chr4_4:64196278-64196297 | Msa0694820:CDS | 55.0% | |
| ATTCCCATTGGCATCGCCCA+AGG | - | chr4_4:64196284-64196303 | None:intergenic | 55.0% | |
| AGAGACTTGCGTGTGATGCC+TGG | + | chr4_4:64196409-64196428 | Msa0694820:CDS | 55.0% | |
| ATTGGGAAGACGCACAGGCA+TGG | - | chr4_4:64197224-64197243 | None:intergenic | 55.0% | |
| AAGTCAGCTATGGCCATGGC+CGG | + | chr4_4:64197470-64197489 | Msa0694820:CDS | 55.0% | |
| ! | GGAAACATCTGTACCGGCCA+TGG | - | chr4_4:64197486-64197505 | None:intergenic | 55.0% |
| CGTGAATGCGGGCAACACAT+AGG | - | chr4_4:64197690-64197709 | None:intergenic | 55.0% | |
| ATGTGTTGCCCGCATTCACG+TGG | + | chr4_4:64197690-64197709 | Msa0694820:CDS | 55.0% | |
| GAGTTGTCGGAGACCGGTGA+AGG | - | chr4_4:64194631-64194650 | None:intergenic | 60.0% | |
| TTCGGCGAGTTGTCGGAGAC+CGG | - | chr4_4:64194637-64194656 | None:intergenic | 60.0% | |
| GGCGTGTTTCGGCGAGTTGT+CGG | - | chr4_4:64194644-64194663 | None:intergenic | 60.0% | |
| CGCCGAAACACGCCGTTTCA+AGG | + | chr4_4:64194650-64194669 | Msa0694820:CDS | 60.0% | |
| CAGTTCGGAGTCCTCCACGA+TGG | + | chr4_4:64194770-64194789 | Msa0694820:CDS | 60.0% | |
| GGGCTTGGACTTGCGAGTTG+TGG | + | chr4_4:64196213-64196232 | Msa0694820:intron | 60.0% | |
| GGCTCATGGGACTGAAGCCT+TGG | + | chr4_4:64196264-64196283 | Msa0694820:CDS | 60.0% | |
| GAAGCCTTGGGCGATGCCAA+TGG | + | chr4_4:64196277-64196296 | Msa0694820:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 64194484 | 64197715 | 64194484 | ID=Msa0694820;Name=Msa0694820 |
| chr4_4 | mRNA | 64194484 | 64197715 | 64194484 | ID=Msa0694820-mRNA-1;Parent=Msa0694820;Name=Msa0694820-mRNA-1;_AED=0.20;_eAED=0.20;_QI=80|0.83|0.85|1|1|0.85|7|0|324 |
| chr4_4 | exon | 64194484 | 64194671 | 64194484 | ID=Msa0694820-mRNA-1:exon:18354;Parent=Msa0694820-mRNA-1 |
| chr4_4 | exon | 64194755 | 64194824 | 64194755 | ID=Msa0694820-mRNA-1:exon:18355;Parent=Msa0694820-mRNA-1 |
| chr4_4 | exon | 64194904 | 64195063 | 64194904 | ID=Msa0694820-mRNA-1:exon:18356;Parent=Msa0694820-mRNA-1 |
| chr4_4 | exon | 64195693 | 64195774 | 64195693 | ID=Msa0694820-mRNA-1:exon:18357;Parent=Msa0694820-mRNA-1 |
| chr4_4 | exon | 64196214 | 64196430 | 64196214 | ID=Msa0694820-mRNA-1:exon:18358;Parent=Msa0694820-mRNA-1 |
| chr4_4 | exon | 64196648 | 64196711 | 64196648 | ID=Msa0694820-mRNA-1:exon:18359;Parent=Msa0694820-mRNA-1 |
| chr4_4 | exon | 64197442 | 64197715 | 64197442 | ID=Msa0694820-mRNA-1:exon:18360;Parent=Msa0694820-mRNA-1 |
| chr4_4 | five_prime_UTR | 64194484 | 64194563 | 64194484 | ID=Msa0694820-mRNA-1:five_prime_utr;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64194564 | 64194671 | 64194564 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64194755 | 64194824 | 64194755 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64194904 | 64195063 | 64194904 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64195693 | 64195774 | 64195693 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64196214 | 64196430 | 64196214 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64196648 | 64196711 | 64196648 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| chr4_4 | CDS | 64197442 | 64197715 | 64197442 | ID=Msa0694820-mRNA-1:cds;Parent=Msa0694820-mRNA-1 |
| Gene Sequence |
| Protein sequence |
