Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652330 | XP_003608130.2 | 91.506 | 259 | 18 | 1 | 1 | 255 | 1 | 259 | 2.68e-160 | 456 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652330 | sp|Q9LET0|BH107_ARATH | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 6.97e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652330 | G7JPQ2 | 91.506 | 259 | 18 | 1 | 1 | 255 | 1 | 259 | 1.28e-160 | 456 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0652330 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652330 | Msa0694870 | 0.808657 | 2.781116e-50 | -8.615850e-47 |
| Msa0652330 | Msa1109890 | 0.805951 | 1.041768e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652330 | MtrunA17_Chr4g0045901 | 91.506 | 259 | 18 | 1 | 1 | 255 | 1 | 259 | 2.46e-164 | 456 |
| Msa0652330 | MtrunA17_Chr2g0325521 | 46.190 | 210 | 108 | 4 | 30 | 238 | 21 | 226 | 2.94e-46 | 155 |
| Msa0652330 | MtrunA17_Chr4g0041051 | 38.996 | 259 | 149 | 7 | 1 | 258 | 1 | 251 | 6.14e-41 | 141 |
| Msa0652330 | MtrunA17_Chr2g0283714 | 46.061 | 165 | 42 | 3 | 104 | 268 | 16 | 133 | 1.20e-35 | 124 |
| Msa0652330 | MtrunA17_Chr7g0255961 | 37.888 | 161 | 97 | 3 | 67 | 226 | 71 | 229 | 5.59e-30 | 113 |
| Msa0652330 | MtrunA17_Chr3g0113721 | 34.673 | 199 | 110 | 7 | 65 | 253 | 33 | 221 | 8.71e-29 | 109 |
| Msa0652330 | MtrunA17_Chr1g0198801 | 41.667 | 180 | 94 | 5 | 57 | 232 | 144 | 316 | 2.77e-25 | 102 |
| Msa0652330 | MtrunA17_Chr5g0412371 | 32.298 | 161 | 97 | 4 | 69 | 223 | 43 | 197 | 3.48e-17 | 77.8 |
| Msa0652330 | MtrunA17_Chr5g0427361 | 33.000 | 200 | 91 | 4 | 64 | 230 | 30 | 219 | 1.26e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652330 | AT3G56770.1 | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 7.08e-30 | 112 |
| Msa0652330 | AT2G40200.1 | 41.667 | 132 | 73 | 2 | 73 | 201 | 65 | 195 | 2.46e-27 | 106 |
| Msa0652330 | AT1G68810.1 | 40.306 | 196 | 111 | 5 | 57 | 251 | 160 | 350 | 4.89e-24 | 99.8 |
| Msa0652330 | AT2G41130.1 | 38.068 | 176 | 101 | 4 | 63 | 236 | 59 | 228 | 5.23e-24 | 97.8 |
| Msa0652330 | AT3G25710.1 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 5.73e-21 | 90.9 |
Find 52 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4_3:-60033575 | None:intergenic |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4_3:+60030687 | Msa0652330:CDS |
| GAACCATATGATACTAAATT+AGG | 0.319188 | 4_3:+60033269 | Msa0652330:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4_3:+60030681 | Msa0652330:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4_3:+60030823 | Msa0652330:CDS |
| TATGATACTAAATTAGGATA+TGG | 0.351083 | 4_3:+60033275 | Msa0652330:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4_3:+60030643 | Msa0652330:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4_3:-60033242 | None:intergenic |
| TATCCTAATTTAGTATCATA+TGG | 0.402521 | 4_3:-60033272 | None:intergenic |
| TTAAGGTCACATAGTATCTC+AGG | 0.426548 | 4_3:-60033338 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4_3:+60033564 | Msa0652330:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4_3:+60030809 | Msa0652330:CDS |
| TTCTCCTCTCTGCTTCCCTA+TGG | 0.451668 | 4_3:-60030804 | None:intergenic |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4_3:+60033514 | Msa0652330:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4_3:+60033508 | Msa0652330:CDS |
| TAGCTTCTTTGAAGAACCAT+AGG | 0.484232 | 4_3:+60030788 | Msa0652330:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4_3:+60030633 | Msa0652330:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4_3:+60030810 | Msa0652330:CDS |
| GAATGAGAAGGAAAAGGCGG+TGG | 0.493115 | 4_3:+60030711 | Msa0652330:CDS |
| TGTAGCTTCCACTCAACAAA+AGG | 0.500104 | 4_3:+60030870 | Msa0652330:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4_3:+60033529 | Msa0652330:CDS |
| TTGTCTTTACATGTTGCAAA+GGG | 0.509752 | 4_3:+60033438 | Msa0652330:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4_3:+60033402 | Msa0652330:CDS |
| CATGCATCTTGTTCATGCTA+AGG | 0.515195 | 4_3:+60033629 | Msa0652330:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4_3:+60030655 | Msa0652330:CDS |
| TTTGTCTTTACATGTTGCAA+AGG | 0.523070 | 4_3:+60033437 | Msa0652330:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4_3:+60033496 | Msa0652330:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.532337 | 4_3:+60030705 | Msa0652330:CDS |
| GATGATGTTTCTGAGGTGAA+AGG | 0.532394 | 4_3:+60030763 | Msa0652330:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4_3:+60033394 | Msa0652330:CDS |
| ATGCATCTTGTTCATGCTAA+GGG | 0.564588 | 4_3:+60033630 | Msa0652330:CDS |
| GAGAGAATAAATGGTCACCT+TGG | 0.565872 | 4_3:+60030832 | Msa0652330:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4_3:+60030732 | Msa0652330:CDS |
| GGAATTAAAGAAGAATGCAA+TGG | 0.577626 | 4_3:+60033196 | Msa0652330:CDS |
| AGCTTCTTTGAAGAACCATA+GGG | 0.592888 | 4_3:+60030789 | Msa0652330:CDS |
| AGATGCATGGCTGCATGAAG+AGG | 0.593504 | 4_3:-60033615 | None:intergenic |
| AATCACTTCAGCAAGTATTG+TGG | 0.602708 | 4_3:-60033162 | None:intergenic |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4_3:+60030736 | Msa0652330:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4_3:+60033490 | Msa0652330:CDS |
| CAAGACCACGTAATGTTCCA+AGG | 0.609560 | 4_3:-60030849 | None:intergenic |
| TGAAGTGATTAGTCAAGTGA+AGG | 0.620505 | 4_3:+60033175 | Msa0652330:CDS |
| GGAGAATGAGAAGGAAAAGG+CGG | 0.620734 | 4_3:+60030708 | Msa0652330:CDS |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4_3:-60030691 | None:intergenic |
| TGGTGGTGATGACAATCCAT+TGG | 0.624935 | 4_3:-60030671 | None:intergenic |
| CTTAGCATGAACAAGATGCA+TGG | 0.629347 | 4_3:-60033628 | None:intergenic |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4_3:+60033376 | Msa0652330:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4_3:+60033209 | Msa0652330:CDS |
| TGGTAAAGATGATGTTTCTG+AGG | 0.646156 | 4_3:+60030756 | Msa0652330:CDS |
| GGTCACATAGTATCTCAGGT+TGG | 0.655590 | 4_3:-60033334 | None:intergenic |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4_3:-60030688 | None:intergenic |
| GGTCACCTTGGAACATTACG+TGG | 0.700048 | 4_3:+60030844 | Msa0652330:CDS |
| AGAACCATAGGGAAGCAGAG+AGG | 0.739044 | 4_3:+60030800 | Msa0652330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr4_3:60031287-60031306 | Msa0652330:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr4_3:60031288-60031307 | Msa0652330:intron | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | - | chr4_3:60031863-60031882 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | + | chr4_3:60031968-60031987 | Msa0652330:intron | 10.0% |
| !! | CATTATTGTAATTAAATTAA+GGG | + | chr4_3:60032045-60032064 | Msa0652330:intron | 10.0% |
| !! | GATGATTATAATATTAATAT+AGG | - | chr4_3:60032718-60032737 | None:intergenic | 10.0% |
| !!! | ATTATATATTTTTTTTGGAA+GGG | - | chr4_3:60033061-60033080 | None:intergenic | 10.0% |
| !!! | AATTATATATTTTTTTTGGA+AGG | - | chr4_3:60033062-60033081 | None:intergenic | 10.0% |
| !!! | TTCTAATTGTAAAATTTGTT+TGG | + | chr4_3:60030952-60030971 | Msa0652330:intron | 15.0% |
| !! | ATTATTATTATCCAAATCTA+TGG | + | chr4_3:60031111-60031130 | Msa0652330:intron | 15.0% |
| !! | TTATTATTATCCAAATCTAT+GGG | + | chr4_3:60031112-60031131 | Msa0652330:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr4_3:60031289-60031308 | Msa0652330:intron | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | + | chr4_3:60031312-60031331 | Msa0652330:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4_3:60031352-60031371 | Msa0652330:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4_3:60031353-60031372 | Msa0652330:intron | 15.0% |
| !! | AAAAATAAACACAAACTAAA+AGG | - | chr4_3:60031698-60031717 | None:intergenic | 15.0% |
| !! | TAAATAAGCATTAAGAAATA+AGG | - | chr4_3:60031917-60031936 | None:intergenic | 15.0% |
| !! | GCATTATTGTAATTAAATTA+AGG | + | chr4_3:60032044-60032063 | Msa0652330:intron | 15.0% |
| !!! | TCATGATATTAGTATTTTTA+TGG | + | chr4_3:60032202-60032221 | Msa0652330:intron | 15.0% |
| !! | GACTAAATTAAGTTTAAATA+TGG | + | chr4_3:60032833-60032852 | Msa0652330:intron | 15.0% |
| !!! | TTATATATTTTTTTTGGAAG+GGG | - | chr4_3:60033060-60033079 | None:intergenic | 15.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | + | chr4_3:60031311-60031330 | Msa0652330:intron | 20.0% |
| !! | AGTTGTATTGAAAATTGAAA+TGG | + | chr4_3:60031385-60031404 | Msa0652330:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr4_3:60031421-60031440 | Msa0652330:intron | 20.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | + | chr4_3:60031474-60031493 | Msa0652330:intron | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | + | chr4_3:60031475-60031494 | Msa0652330:intron | 20.0% |
| !!! | CAAATATAGTTTTGGTTTTT+AGG | + | chr4_3:60031505-60031524 | Msa0652330:intron | 20.0% |
| !! | ATTCAATATCAAAATTCTGA+TGG | - | chr4_3:60031646-60031665 | None:intergenic | 20.0% |
| !! | AGATAACACATATATGATAT+CGG | + | chr4_3:60031761-60031780 | Msa0652330:intron | 20.0% |
| !! | CAAATATTATTTCCTTGATT+AGG | + | chr4_3:60032291-60032310 | Msa0652330:intron | 20.0% |
| !!! | TTGTTGTCTTATTTCTATAA+TGG | + | chr4_3:60032582-60032601 | Msa0652330:intron | 20.0% |
| !!! | TTTTTTACGGTAATAATACA+TGG | + | chr4_3:60032906-60032925 | Msa0652330:intron | 20.0% |
| !! | TATCCTAATTTAGTATCATA+TGG | - | chr4_3:60033275-60033294 | None:intergenic | 20.0% |
| !! | TATGATACTAAATTAGGATA+TGG | + | chr4_3:60033275-60033294 | Msa0652330:CDS | 20.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | + | chr4_3:60030643-60030662 | Msa0652330:CDS | 25.0% |
| ! | ATATTGCATAAAACATACGT+AGG | + | chr4_3:60031015-60031034 | Msa0652330:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr4_3:60031420-60031439 | Msa0652330:intron | 25.0% |
| !! | AGTTTAAGTTTGAACAAAGA+TGG | + | chr4_3:60031534-60031553 | Msa0652330:intron | 25.0% |
| ! | AGGTGAGAATCAAATATAAT+TGG | + | chr4_3:60031577-60031596 | Msa0652330:intron | 25.0% |
| ! | GGTGAGAATCAAATATAATT+GGG | + | chr4_3:60031578-60031597 | Msa0652330:intron | 25.0% |
| ! | AACACAAACTAAAAGGATAT+TGG | - | chr4_3:60031691-60031710 | None:intergenic | 25.0% |
| ! | AAGAAATAAGGAAATGCTAA+GGG | - | chr4_3:60031905-60031924 | None:intergenic | 25.0% |
| ! | TAAGAAATAAGGAAATGCTA+AGG | - | chr4_3:60031906-60031925 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | - | chr4_3:60032024-60032043 | None:intergenic | 25.0% |
| !! | TTTTATGGTTTCTTCTTCTA+TGG | + | chr4_3:60032217-60032236 | Msa0652330:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+CGG | - | chr4_3:60032244-60032263 | None:intergenic | 25.0% |
| !! | ATATACTTTTGTTCATGTCA+TGG | - | chr4_3:60032320-60032339 | None:intergenic | 25.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | - | chr4_3:60032567-60032586 | None:intergenic | 25.0% |
| ! | GACAACAAATAAAGATAAGA+TGG | - | chr4_3:60032570-60032589 | None:intergenic | 25.0% |
| !!! | TTATTTCTATAATGGTGATG+TGG | + | chr4_3:60032590-60032609 | Msa0652330:intron | 25.0% |
| !! | TATTTCTATAATGGTGATGT+GGG | + | chr4_3:60032591-60032610 | Msa0652330:intron | 25.0% |
| !!! | ATATTAATATAGGAGTACTG+AGG | - | chr4_3:60032708-60032727 | None:intergenic | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | - | chr4_3:60032750-60032769 | None:intergenic | 25.0% |
| ! | TAATAAATCAACTCAGTTGT+TGG | + | chr4_3:60032750-60032769 | Msa0652330:intron | 25.0% |
| ! | ATTCAAGACAATGTTATCAA+AGG | + | chr4_3:60032796-60032815 | Msa0652330:intron | 25.0% |
| !!! | ATGTGTTGAATTTGATTTTG+TGG | + | chr4_3:60033106-60033125 | Msa0652330:intron | 25.0% |
| !!! | TGTGTTGAATTTGATTTTGT+GGG | + | chr4_3:60033107-60033126 | Msa0652330:intron | 25.0% |
| !! | ATGGTTCATTACATTTTAGA+TGG | + | chr4_3:60033133-60033152 | Msa0652330:intron | 25.0% |
| ! | GAACCATATGATACTAAATT+AGG | + | chr4_3:60033269-60033288 | Msa0652330:CDS | 25.0% |
| !!! | GTGCATTAATTGCTTTTTTA+AGG | - | chr4_3:60033358-60033377 | None:intergenic | 25.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | + | chr4_3:60030633-60030652 | Msa0652330:CDS | 30.0% |
| CAAAAAGAACAATGAAAGCA+AGG | - | chr4_3:60030912-60030931 | None:intergenic | 30.0% | |
| TCAATTTGATTGTGAAGTGT+CGG | - | chr4_3:60031050-60031069 | None:intergenic | 30.0% | |
| ACACTTCACAATCAAATTGA+AGG | + | chr4_3:60031050-60031069 | Msa0652330:intron | 30.0% | |
| ATTGAAATGGCTCAGTTATT+TGG | + | chr4_3:60031398-60031417 | Msa0652330:intron | 30.0% | |
| TTGAAATGGCTCAGTTATTT+GGG | + | chr4_3:60031399-60031418 | Msa0652330:intron | 30.0% | |
| GAAGGGAGTAATAGATTTAA+TGG | + | chr4_3:60031460-60031479 | Msa0652330:intron | 30.0% | |
| ! | GTGAGGAACAAATATAGTTT+TGG | + | chr4_3:60031497-60031516 | Msa0652330:intron | 30.0% |
| AAATATAATTGGGTACCTGA+GGG | + | chr4_3:60031588-60031607 | Msa0652330:intron | 30.0% | |
| ! | TATTGACAATATTTTCCCTC+AGG | - | chr4_3:60031606-60031625 | None:intergenic | 30.0% |
| ! | AATTATCAAAGAGCGTGAAA+GGG | - | chr4_3:60031956-60031975 | None:intergenic | 30.0% |
| ! | AAATTATCAAAGAGCGTGAA+AGG | - | chr4_3:60031957-60031976 | None:intergenic | 30.0% |
| ! | TACTGATTGCTAAAGTCAAA+TGG | + | chr4_3:60032118-60032137 | Msa0652330:intron | 30.0% |
| GTGCAATTATATATCCCATA+TGG | + | chr4_3:60032165-60032184 | Msa0652330:intron | 30.0% | |
| !! | ACACTAATGTCAATTTTGAC+AGG | + | chr4_3:60032350-60032369 | Msa0652330:intron | 30.0% |
| !! | CACTAATGTCAATTTTGACA+GGG | + | chr4_3:60032351-60032370 | Msa0652330:intron | 30.0% |
| !!! | ATTGCTTTCAAGTTTTGTTG+TGG | + | chr4_3:60032454-60032473 | Msa0652330:intron | 30.0% |
| ! | ATTTCTATAATGGTGATGTG+GGG | + | chr4_3:60032592-60032611 | Msa0652330:intron | 30.0% |
| TGATTTATTAAGGTGGATGA+AGG | - | chr4_3:60032740-60032759 | None:intergenic | 30.0% | |
| !! | ACTGAGTTGATTTATTAAGG+TGG | - | chr4_3:60032747-60032766 | None:intergenic | 30.0% |
| ACTAATCACGTTCAAATATG+TGG | + | chr4_3:60032962-60032981 | Msa0652330:intron | 30.0% | |
| !! | AATTTGATTTTGTGGGTCAA+TGG | + | chr4_3:60033114-60033133 | Msa0652330:intron | 30.0% |
| GGAATTAAAGAAGAATGCAA+TGG | + | chr4_3:60033196-60033215 | Msa0652330:CDS | 30.0% | |
| TTTGTCTTTACATGTTGCAA+AGG | + | chr4_3:60033437-60033456 | Msa0652330:CDS | 30.0% | |
| TTGTCTTTACATGTTGCAAA+GGG | + | chr4_3:60033438-60033457 | Msa0652330:CDS | 30.0% | |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | + | chr4_3:60033457-60033476 | Msa0652330:CDS | 30.0% |
| TATTGCAAATGTTGTTCACA+AGG | + | chr4_3:60033490-60033509 | Msa0652330:CDS | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | + | chr4_3:60033564-60033583 | Msa0652330:CDS | 30.0% | |
| TTCTCCAAAACCAATGAATG+TGG | - | chr4_3:60030694-60030713 | None:intergenic | 35.0% | |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | + | chr4_3:60030699-60030718 | Msa0652330:CDS | 35.0% |
| TTTGGAGAATGAGAAGGAAA+AGG | + | chr4_3:60030705-60030724 | Msa0652330:CDS | 35.0% | |
| ! | TACCAACCTTTTCAGTAACA+GGG | - | chr4_3:60030741-60030760 | None:intergenic | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | - | chr4_3:60030742-60030761 | None:intergenic | 35.0% |
| ! | TGGTAAAGATGATGTTTCTG+AGG | + | chr4_3:60030756-60030775 | Msa0652330:CDS | 35.0% |
| ! | TAGCTTCTTTGAAGAACCAT+AGG | + | chr4_3:60030788-60030807 | Msa0652330:CDS | 35.0% |
| ! | AGCTTCTTTGAAGAACCATA+GGG | + | chr4_3:60030789-60030808 | Msa0652330:CDS | 35.0% |
| AGAAGAAGGGAGAGAATAAA+TGG | + | chr4_3:60030823-60030842 | Msa0652330:CDS | 35.0% | |
| ! | AAGACATACCTTTTGTTGAG+TGG | - | chr4_3:60030881-60030900 | None:intergenic | 35.0% |
| AAGAACAATGAAAGCAAGGA+AGG | - | chr4_3:60030908-60030927 | None:intergenic | 35.0% | |
| CTTCACAATCAAATTGAAGG+TGG | + | chr4_3:60031053-60031072 | Msa0652330:intron | 35.0% | |
| ACGATATTGACCCATAGATT+TGG | - | chr4_3:60031125-60031144 | None:intergenic | 35.0% | |
| ! | TGGTAACCATGTCTCTTTTA+GGG | + | chr4_3:60031148-60031167 | Msa0652330:intron | 35.0% |
| TCTATAAAATGCATGTGCTG+TGG | + | chr4_3:60031198-60031217 | Msa0652330:intron | 35.0% | |
| ATATGTGTGAAATGAGCCAA+GGG | - | chr4_3:60031267-60031286 | None:intergenic | 35.0% | |
| AATATGTGTGAAATGAGCCA+AGG | - | chr4_3:60031268-60031287 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr4_3:60031434-60031453 | Msa0652330:intron | 35.0% | |
| AGATGGCAATACAAGCTTTA+AGG | + | chr4_3:60031551-60031570 | Msa0652330:intron | 35.0% | |
| CAAATATAATTGGGTACCTG+AGG | + | chr4_3:60031587-60031606 | Msa0652330:intron | 35.0% | |
| TCTTTACAAGTCTCGAGAAT+TGG | - | chr4_3:60031822-60031841 | None:intergenic | 35.0% | |
| GCATCATGGTTGTCATTATA+TGG | + | chr4_3:60032077-60032096 | Msa0652330:intron | 35.0% | |
| ! | ACTCAGTTTGTTTGCCATAT+GGG | - | chr4_3:60032182-60032201 | None:intergenic | 35.0% |
| ! | AACTCAGTTTGTTTGCCATA+TGG | - | chr4_3:60032183-60032202 | None:intergenic | 35.0% |
| !!! | GACAGGGTATTTTAACTTGA+TGG | + | chr4_3:60032367-60032386 | Msa0652330:intron | 35.0% |
| TTTGGAAGGGGAAAAATTGT+TGG | - | chr4_3:60033048-60033067 | None:intergenic | 35.0% | |
| ! | AATCACTTCAGCAAGTATTG+TGG | - | chr4_3:60033165-60033184 | None:intergenic | 35.0% |
| ! | TGAAGTGATTAGTCAAGTGA+AGG | + | chr4_3:60033175-60033194 | Msa0652330:CDS | 35.0% |
| TTCACTTCATCAACTTCTGT+TGG | - | chr4_3:60033245-60033264 | None:intergenic | 35.0% | |
| TTAAGGTCACATAGTATCTC+AGG | - | chr4_3:60033341-60033360 | None:intergenic | 35.0% | |
| ACTTCAACTTCAACTAGTGA+AGG | + | chr4_3:60033376-60033395 | Msa0652330:CDS | 35.0% | |
| AAATGTCAACATTGGAAAGC+AGG | + | chr4_3:60033402-60033421 | Msa0652330:CDS | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | - | chr4_3:60033578-60033597 | None:intergenic | 35.0% | |
| !! | GATAACTTTGGAGCTTCCAA+TGG | + | chr4_3:60030655-60030674 | Msa0652330:CDS | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | + | chr4_3:60030687-60030706 | Msa0652330:CDS | 40.0% |
| TCCAAAACCAATGAATGTGG+TGG | - | chr4_3:60030691-60030710 | None:intergenic | 40.0% | |
| !! | GATGATGTTTCTGAGGTGAA+AGG | + | chr4_3:60030763-60030782 | Msa0652330:CDS | 40.0% |
| GAGAGAATAAATGGTCACCT+TGG | + | chr4_3:60030832-60030851 | Msa0652330:CDS | 40.0% | |
| TGTAGCTTCCACTCAACAAA+AGG | + | chr4_3:60030870-60030889 | Msa0652330:CDS | 40.0% | |
| ! | CTGGTAACCATGTCTCTTTT+AGG | + | chr4_3:60031147-60031166 | Msa0652330:intron | 40.0% |
| ATCATGCCCTAAAAGAGACA+TGG | - | chr4_3:60031157-60031176 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr4_3:60031435-60031454 | Msa0652330:intron | 40.0% | |
| TGGAAAGTTGAAATTGGGTG+AGG | + | chr4_3:60031480-60031499 | Msa0652330:intron | 40.0% | |
| !! | CAATACAAGCTTTAAGGCAG+AGG | + | chr4_3:60031557-60031576 | Msa0652330:intron | 40.0% |
| AAGGGATTCTGATTGCATCA+TGG | + | chr4_3:60032063-60032082 | Msa0652330:intron | 40.0% | |
| ATGTCATGGAGACCTAATCA+AGG | - | chr4_3:60032306-60032325 | None:intergenic | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | - | chr4_3:60032687-60032706 | None:intergenic | 40.0% | |
| !! | TATAGGAGTACTGAGGAAAG+AGG | - | chr4_3:60032701-60032720 | None:intergenic | 40.0% |
| ! | TGATTAGTCATGTGTCACAC+GGG | - | chr4_3:60032950-60032969 | None:intergenic | 40.0% |
| ! | GTGATTAGTCATGTGTCACA+CGG | - | chr4_3:60032951-60032970 | None:intergenic | 40.0% |
| AATGCAATGGAAGCAAGCAA+AGG | + | chr4_3:60033209-60033228 | Msa0652330:CDS | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | + | chr4_3:60033394-60033413 | Msa0652330:CDS | 40.0% | |
| AAATGTTGTTCACAAGGCAC+TGG | + | chr4_3:60033496-60033515 | Msa0652330:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | + | chr4_3:60033529-60033548 | Msa0652330:CDS | 40.0% | |
| ! | TGGTGGTGATGACAATCCAT+TGG | - | chr4_3:60030674-60030693 | None:intergenic | 45.0% |
| GTCATCACCACCACATTCAT+TGG | + | chr4_3:60030681-60030700 | Msa0652330:CDS | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+CGG | + | chr4_3:60030708-60030727 | Msa0652330:CDS | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | + | chr4_3:60030736-60030755 | Msa0652330:CDS | 45.0% | |
| CAAGACCACGTAATGTTCCA+AGG | - | chr4_3:60030852-60030871 | None:intergenic | 45.0% | |
| CTATGGGTCAATATCGTGTC+TGG | + | chr4_3:60031128-60031147 | Msa0652330:intron | 45.0% | |
| ATGTGCTGTGGAGATGAGAA+AGG | + | chr4_3:60031210-60031229 | Msa0652330:intron | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | + | chr4_3:60031211-60031230 | Msa0652330:intron | 45.0% | |
| CTCAGATAAATTGGGACGGA+GGG | - | chr4_3:60031244-60031263 | None:intergenic | 45.0% | |
| AGGGCTCAGATAAATTGGGA+CGG | - | chr4_3:60031248-60031267 | None:intergenic | 45.0% | |
| TCCCAATTTATCTGAGCCCT+TGG | + | chr4_3:60031248-60031267 | Msa0652330:intron | 45.0% | |
| GCCAAGGGCTCAGATAAATT+GGG | - | chr4_3:60031252-60031271 | None:intergenic | 45.0% | |
| AGCCAAGGGCTCAGATAAAT+TGG | - | chr4_3:60031253-60031272 | None:intergenic | 45.0% | |
| ATCTATTACTCCCTTCGTCC+CGG | - | chr4_3:60031456-60031475 | None:intergenic | 45.0% | |
| CTTCTTCTATGGTCCGAAAC+TGG | + | chr4_3:60032228-60032247 | Msa0652330:intron | 45.0% | |
| !!! | AGTTTTGTTGTGGACATGCC+AGG | + | chr4_3:60032464-60032483 | Msa0652330:intron | 45.0% |
| ATACCATCCAGAAGAACACC+TGG | - | chr4_3:60032485-60032504 | None:intergenic | 45.0% | |
| GGTCACATAGTATCTCAGGT+TGG | - | chr4_3:60033337-60033356 | None:intergenic | 45.0% | |
| ACTGGATTCTGTGCTGGAAA+AGG | + | chr4_3:60033514-60033533 | Msa0652330:CDS | 45.0% | |
| !!! | TAAAAAAAATGATTAAATTT+TGG | - | chr4_3:60032893-60032912 | None:intergenic | 5.0% |
| !!! | AAATTTAATCATTTTTTTTA+CGG | + | chr4_3:60032893-60032912 | Msa0652330:intron | 5.0% |
| !!! | AAGTAATTATATATTTTTTT+TGG | - | chr4_3:60033066-60033085 | None:intergenic | 5.0% |
| GAATGAGAAGGAAAAGGCGG+TGG | + | chr4_3:60030711-60030730 | Msa0652330:CDS | 50.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | + | chr4_3:60030732-60030751 | Msa0652330:CDS | 50.0% |
| AGAACCATAGGGAAGCAGAG+AGG | + | chr4_3:60030800-60030819 | Msa0652330:CDS | 50.0% | |
| TTCTCCTCTCTGCTTCCCTA+TGG | - | chr4_3:60030807-60030826 | None:intergenic | 50.0% | |
| GGAAGCAGAGAGGAGAAGAA+GGG | + | chr4_3:60030810-60030829 | Msa0652330:CDS | 50.0% | |
| GGTCACCTTGGAACATTACG+TGG | + | chr4_3:60030844-60030863 | Msa0652330:CDS | 50.0% | |
| GCTCAGATAAATTGGGACGG+AGG | - | chr4_3:60031245-60031264 | None:intergenic | 50.0% | |
| GTCAGATATTCCGGGACGAA+GGG | + | chr4_3:60031443-60031462 | Msa0652330:intron | 50.0% | |
| ATGCCAGGTGTTCTTCTGGA+TGG | + | chr4_3:60032479-60032498 | Msa0652330:intron | 50.0% | |
| CACACGGGTGTACATAGAGT+GGG | - | chr4_3:60032935-60032954 | None:intergenic | 50.0% | |
| TCACACGGGTGTACATAGAG+TGG | - | chr4_3:60032936-60032955 | None:intergenic | 50.0% | |
| AGATGCATGGCTGCATGAAG+AGG | - | chr4_3:60033618-60033637 | None:intergenic | 50.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | + | chr4_3:60030809-60030828 | Msa0652330:CDS | 55.0% | |
| GGTCAGATATTCCGGGACGA+AGG | + | chr4_3:60031442-60031461 | Msa0652330:intron | 55.0% | |
| GGACATGCCAGGTGTTCTTC+TGG | + | chr4_3:60032475-60032494 | Msa0652330:intron | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | + | chr4_3:60033508-60033527 | Msa0652330:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60030583 | 60033649 | 60030583 | ID=Msa0652330;Name=Msa0652330 |
| chr4_3 | mRNA | 60030583 | 60033649 | 60030583 | ID=Msa0652330-mRNA-1;Parent=Msa0652330;Name=Msa0652330-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0|0|1|1|1|2|0|268 |
| chr4_3 | exon | 60030583 | 60030891 | 60030583 | ID=Msa0652330-mRNA-1:exon:16242;Parent=Msa0652330-mRNA-1 |
| chr4_3 | exon | 60033152 | 60033649 | 60033152 | ID=Msa0652330-mRNA-1:exon:16243;Parent=Msa0652330-mRNA-1 |
| chr4_3 | CDS | 60030583 | 60030891 | 60030583 | ID=Msa0652330-mRNA-1:cds;Parent=Msa0652330-mRNA-1 |
| chr4_3 | CDS | 60033152 | 60033649 | 60033152 | ID=Msa0652330-mRNA-1:cds;Parent=Msa0652330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
