Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694870 | XP_003608130.2 | 91.892 | 259 | 17 | 1 | 1 | 255 | 1 | 259 | 1.75e-161 | 459 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694870 | sp|Q9LET0|BH107_ARATH | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 6.07e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694870 | G7JPQ2 | 91.892 | 259 | 17 | 1 | 1 | 255 | 1 | 259 | 8.34e-162 | 459 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0694870 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0652330 | Msa0694870 | 0.808657 | 2.781116e-50 | -8.615850e-47 |
| Msa0694870 | Msa1021620 | 0.801849 | 7.414737e-49 | -8.615850e-47 |
| Msa0694870 | Msa1057940 | -0.801476 | 8.843016e-49 | -8.615850e-47 |
| Msa0537210 | Msa0694870 | 0.811467 | 6.899492e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694870 | MtrunA17_Chr4g0045901 | 91.892 | 259 | 17 | 1 | 1 | 255 | 1 | 259 | 1.61e-165 | 459 |
| Msa0694870 | MtrunA17_Chr2g0325521 | 46.190 | 210 | 108 | 4 | 30 | 238 | 21 | 226 | 2.61e-46 | 155 |
| Msa0694870 | MtrunA17_Chr4g0041051 | 38.610 | 259 | 150 | 7 | 1 | 258 | 1 | 251 | 2.10e-40 | 140 |
| Msa0694870 | MtrunA17_Chr2g0283714 | 46.061 | 165 | 42 | 3 | 104 | 268 | 16 | 133 | 1.36e-35 | 124 |
| Msa0694870 | MtrunA17_Chr7g0255961 | 37.888 | 161 | 97 | 3 | 67 | 226 | 71 | 229 | 5.14e-30 | 113 |
| Msa0694870 | MtrunA17_Chr3g0113721 | 34.673 | 199 | 110 | 7 | 65 | 253 | 33 | 221 | 8.44e-29 | 109 |
| Msa0694870 | MtrunA17_Chr1g0198801 | 41.667 | 180 | 94 | 5 | 57 | 232 | 144 | 316 | 2.50e-25 | 102 |
| Msa0694870 | MtrunA17_Chr5g0412371 | 32.298 | 161 | 97 | 4 | 69 | 223 | 43 | 197 | 3.14e-17 | 78.2 |
| Msa0694870 | MtrunA17_Chr5g0427361 | 33.000 | 200 | 91 | 4 | 64 | 230 | 30 | 219 | 1.38e-13 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0694870 | AT3G56770.1 | 39.205 | 176 | 98 | 5 | 63 | 236 | 37 | 205 | 6.17e-30 | 112 |
| Msa0694870 | AT2G40200.1 | 41.667 | 132 | 73 | 2 | 73 | 201 | 65 | 195 | 2.33e-27 | 106 |
| Msa0694870 | AT1G68810.1 | 40.306 | 196 | 111 | 5 | 57 | 251 | 160 | 350 | 4.43e-24 | 100 |
| Msa0694870 | AT2G41130.1 | 38.068 | 176 | 101 | 4 | 63 | 236 | 59 | 228 | 5.34e-24 | 97.8 |
| Msa0694870 | AT3G25710.1 | 32.642 | 193 | 110 | 4 | 27 | 202 | 72 | 261 | 5.24e-21 | 91.3 |
Find 52 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACATTCTTCTCCTCTTATT+TGG | 0.100613 | 4_4:-64255942 | None:intergenic |
| ACCACCACATTCATTGGTTT+TGG | 0.275049 | 4_4:+64253053 | Msa0694870:CDS |
| GAACCATATGATACTAAATT+AGG | 0.319188 | 4_4:+64255636 | Msa0694870:CDS |
| GTCATCACCACCACATTCAT+TGG | 0.344688 | 4_4:+64253047 | Msa0694870:CDS |
| AGAAGAAGGGAGAGAATAAA+TGG | 0.348920 | 4_4:+64253189 | Msa0694870:CDS |
| TATGATACTAAATTAGGATA+TGG | 0.351083 | 4_4:+64255642 | Msa0694870:CDS |
| AATCAAACTTTGGATAACTT+TGG | 0.378387 | 4_4:+64253009 | Msa0694870:CDS |
| TTCACTTCATCAACTTCTGT+TGG | 0.395317 | 4_4:-64255609 | None:intergenic |
| TATCCTAATTTAGTATCATA+TGG | 0.402521 | 4_4:-64255639 | None:intergenic |
| TTAAGGTCACATAGTATCTC+AGG | 0.426548 | 4_4:-64255705 | None:intergenic |
| GAACTTCATATCCAAATAAG+AGG | 0.441039 | 4_4:+64255931 | Msa0694870:CDS |
| GGGAAGCAGAGAGGAGAAGA+AGG | 0.448212 | 4_4:+64253175 | Msa0694870:CDS |
| TTCTCCTCTCTGCTTCCCTA+TGG | 0.451668 | 4_4:-64253170 | None:intergenic |
| TTGTGTTTACATGTTGTAAA+GGG | 0.470424 | 4_4:+64255805 | Msa0694870:CDS |
| ACTGGATTCTGTGCTGGAAA+AGG | 0.471850 | 4_4:+64255881 | Msa0694870:CDS |
| CAAGGCACTGGATTCTGTGC+TGG | 0.480944 | 4_4:+64255875 | Msa0694870:CDS |
| TAGCTTCTTTGAAGAACCAT+AGG | 0.484232 | 4_4:+64253154 | Msa0694870:CDS |
| GAGTTTGTTCAATCAAACTT+TGG | 0.484332 | 4_4:+64252999 | Msa0694870:CDS |
| GGAAGCAGAGAGGAGAAGAA+GGG | 0.491306 | 4_4:+64253176 | Msa0694870:CDS |
| GAATGAGAAGGAAAAGGCGG+TGG | 0.493115 | 4_4:+64253077 | Msa0694870:CDS |
| GGAAAAGGCTTCTAACTCAA+TGG | 0.501654 | 4_4:+64255896 | Msa0694870:CDS |
| TGTAGCTTCCACTCATCAAA+AGG | 0.507874 | 4_4:+64253236 | Msa0694870:CDS |
| TTTGTGTTTACATGTTGTAA+AGG | 0.510071 | 4_4:+64255804 | Msa0694870:CDS |
| AAATGTCAACATTGGAAAGC+AGG | 0.511259 | 4_4:+64255769 | Msa0694870:CDS |
| CATGCATCTTGTTCATGCTA+AGG | 0.515195 | 4_4:+64255996 | Msa0694870:CDS |
| GATAACTTTGGAGCTTCCAA+TGG | 0.517984 | 4_4:+64253021 | Msa0694870:CDS |
| AAATGTTGTTCACAAGGCAC+TGG | 0.530660 | 4_4:+64255863 | Msa0694870:CDS |
| TTTGGAGAATGAGAAGGAAA+AGG | 0.532337 | 4_4:+64253071 | Msa0694870:CDS |
| GATGATGTTTCTGAGGTGAA+AGG | 0.532394 | 4_4:+64253129 | Msa0694870:CDS |
| GAAGGCAGAAATGTCAACAT+TGG | 0.560990 | 4_4:+64255761 | Msa0694870:CDS |
| ATGCATCTTGTTCATGCTAA+GGG | 0.564588 | 4_4:+64255997 | Msa0694870:CDS |
| GAGAGAATAAATGGTCACCT+TGG | 0.565872 | 4_4:+64253198 | Msa0694870:CDS |
| GGAGTGCCCTGTTACTGAAA+AGG | 0.568614 | 4_4:+64253098 | Msa0694870:CDS |
| GGAATTAAAGAAGAATGCAA+TGG | 0.577626 | 4_4:+64255563 | Msa0694870:CDS |
| AGCTTCTTTGAAGAACCATA+GGG | 0.592888 | 4_4:+64253155 | Msa0694870:CDS |
| AGATGCATGGCTGCATGAAG+AGG | 0.593504 | 4_4:-64255982 | None:intergenic |
| AATCACTTCAGCAAGTATTG+TGG | 0.602708 | 4_4:-64255529 | None:intergenic |
| TGCCCTGTTACTGAAAAGGT+TGG | 0.605529 | 4_4:+64253102 | Msa0694870:CDS |
| TATTGCAAATGTTGTTCACA+AGG | 0.609473 | 4_4:+64255857 | Msa0694870:CDS |
| CAAGACCACGTAATGTTCCA+AGG | 0.609560 | 4_4:-64253215 | None:intergenic |
| TGAAGTGATTAGTCAAGTGA+AGG | 0.620505 | 4_4:+64255542 | Msa0694870:CDS |
| GGAGAATGAGAAGGAAAAGG+CGG | 0.620734 | 4_4:+64253074 | Msa0694870:CDS |
| TTCTCCAAAACCAATGAATG+TGG | 0.622319 | 4_4:-64253057 | None:intergenic |
| TGGTGGTGATGACAATCCAT+TGG | 0.624935 | 4_4:-64253037 | None:intergenic |
| CTTAGCATGAACAAGATGCA+TGG | 0.629347 | 4_4:-64255995 | None:intergenic |
| ACTTCAACTTCAACTAGTGA+AGG | 0.632952 | 4_4:+64255743 | Msa0694870:CDS |
| AATGCAATGGAAGCAAGCAA+AGG | 0.642370 | 4_4:+64255576 | Msa0694870:CDS |
| TGGTAAAGATGATGTTTCTG+AGG | 0.646156 | 4_4:+64253122 | Msa0694870:CDS |
| GGTCACATAGTATCTCAGGT+TGG | 0.655590 | 4_4:-64255701 | None:intergenic |
| TCCAAAACCAATGAATGTGG+TGG | 0.695002 | 4_4:-64253054 | None:intergenic |
| GGTCACCTTGGAACATTACG+TGG | 0.700048 | 4_4:+64253210 | Msa0694870:CDS |
| AGAACCATAGGGAAGCAGAG+AGG | 0.739044 | 4_4:+64253166 | Msa0694870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGAAAAATGTATAAATAA+AGG | + | chr4_4:64253653-64253672 | Msa0694870:intron | 10.0% |
| !! | AAGAAAAATGTATAAATAAA+GGG | + | chr4_4:64253654-64253673 | Msa0694870:intron | 10.0% |
| !!! | TAAAGTATTTTTTATTCTAA+AGG | - | chr4_4:64254230-64254249 | None:intergenic | 10.0% |
| !!! | TGATAATTTTAAAAGAAAAA+TGG | + | chr4_4:64254335-64254354 | Msa0694870:intron | 10.0% |
| !! | CATTATTGTAATTAAATTAA+GGG | + | chr4_4:64254412-64254431 | Msa0694870:intron | 10.0% |
| !! | GATGATTATAATATTAATAT+AGG | - | chr4_4:64255085-64255104 | None:intergenic | 10.0% |
| !!! | ATTATATATTTTTTTTGGAA+GGG | - | chr4_4:64255428-64255447 | None:intergenic | 10.0% |
| !!! | AATTATATATTTTTTTTGGA+AGG | - | chr4_4:64255429-64255448 | None:intergenic | 10.0% |
| !!! | TTCTAATTGTAAAATTTGTT+TGG | + | chr4_4:64253318-64253337 | Msa0694870:intron | 15.0% |
| !! | ATTATTATTATCCAAATCTA+TGG | + | chr4_4:64253477-64253496 | Msa0694870:intron | 15.0% |
| !! | TTATTATTATCCAAATCTAT+GGG | + | chr4_4:64253478-64253497 | Msa0694870:intron | 15.0% |
| !! | AGAAAAATGTATAAATAAAG+GGG | + | chr4_4:64253655-64253674 | Msa0694870:intron | 15.0% |
| !! | AAAGTAGAATATATTGTATT+GGG | + | chr4_4:64253678-64253697 | Msa0694870:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | chr4_4:64253718-64253737 | Msa0694870:intron | 15.0% |
| !! | ATTTAGTGTTATATTGTATT+GGG | + | chr4_4:64253719-64253738 | Msa0694870:intron | 15.0% |
| !! | AAAAATAAACACAAACTAAA+AGG | - | chr4_4:64254065-64254084 | None:intergenic | 15.0% |
| !! | TAAATAAGCATTAAGAAATA+AGG | - | chr4_4:64254284-64254303 | None:intergenic | 15.0% |
| !! | GCATTATTGTAATTAAATTA+AGG | + | chr4_4:64254411-64254430 | Msa0694870:intron | 15.0% |
| !!! | TCATGATATTAGTATTTTTA+TGG | + | chr4_4:64254569-64254588 | Msa0694870:intron | 15.0% |
| !! | GACTAAATTAAGTTTAAATA+TGG | + | chr4_4:64255200-64255219 | Msa0694870:intron | 15.0% |
| !!! | TTATATATTTTTTTTGGAAG+GGG | - | chr4_4:64255427-64255446 | None:intergenic | 15.0% |
| !! | GAAAGTAGAATATATTGTAT+TGG | + | chr4_4:64253677-64253696 | Msa0694870:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | chr4_4:64253788-64253807 | Msa0694870:intron | 20.0% |
| !! | ATTTAATGGAAAGTTGAAAT+TGG | + | chr4_4:64253841-64253860 | Msa0694870:intron | 20.0% |
| !! | TTTAATGGAAAGTTGAAATT+GGG | + | chr4_4:64253842-64253861 | Msa0694870:intron | 20.0% |
| !!! | CAAATATAGTTTTGGTTTTT+AGG | + | chr4_4:64253872-64253891 | Msa0694870:intron | 20.0% |
| !! | ATTCAATATCAAAATTCTGA+TGG | - | chr4_4:64254013-64254032 | None:intergenic | 20.0% |
| !! | AGATAACACATATATGATAT+CGG | + | chr4_4:64254128-64254147 | Msa0694870:intron | 20.0% |
| !! | CAAATATTATTTCCTTGATT+AGG | + | chr4_4:64254658-64254677 | Msa0694870:intron | 20.0% |
| !!! | TTGTTGTCTTATTTCTATAA+TGG | + | chr4_4:64254949-64254968 | Msa0694870:intron | 20.0% |
| !!! | TTTTTTACGGTAATAATACA+TGG | + | chr4_4:64255273-64255292 | Msa0694870:intron | 20.0% |
| !! | TATCCTAATTTAGTATCATA+TGG | - | chr4_4:64255642-64255661 | None:intergenic | 20.0% |
| !! | TATGATACTAAATTAGGATA+TGG | + | chr4_4:64255642-64255661 | Msa0694870:CDS | 20.0% |
| ! | AATCAAACTTTGGATAACTT+TGG | + | chr4_4:64253009-64253028 | Msa0694870:CDS | 25.0% |
| ! | ATATTGCATAAAACATACGT+AGG | + | chr4_4:64253381-64253400 | Msa0694870:intron | 25.0% |
| !! | TTGAAATGACTCAGTTATTT+TGG | + | chr4_4:64253765-64253784 | Msa0694870:intron | 25.0% |
| !!! | TGAAATGACTCAGTTATTTT+GGG | + | chr4_4:64253766-64253785 | Msa0694870:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | chr4_4:64253787-64253806 | Msa0694870:intron | 25.0% |
| !! | AGTTTAAGTTTGAACAAAGA+TGG | + | chr4_4:64253901-64253920 | Msa0694870:intron | 25.0% |
| ! | AGGTGAGAATCAAATATAAT+TGG | + | chr4_4:64253944-64253963 | Msa0694870:intron | 25.0% |
| ! | GGTGAGAATCAAATATAATT+GGG | + | chr4_4:64253945-64253964 | Msa0694870:intron | 25.0% |
| ! | AACACAAACTAAAAGGATAT+TGG | - | chr4_4:64254058-64254077 | None:intergenic | 25.0% |
| ! | AAGAAATAAGGAAATGCTAA+GGG | - | chr4_4:64254272-64254291 | None:intergenic | 25.0% |
| ! | TAAGAAATAAGGAAATGCTA+AGG | - | chr4_4:64254273-64254292 | None:intergenic | 25.0% |
| ! | ACTTCAAATTTCAAAACTTG+TGG | - | chr4_4:64254391-64254410 | None:intergenic | 25.0% |
| !! | TTTTATGGTTTCTTCTTCTA+TGG | + | chr4_4:64254584-64254603 | Msa0694870:intron | 25.0% |
| ! | TAATGAATGATTTCCAGTTT+CGG | - | chr4_4:64254611-64254630 | None:intergenic | 25.0% |
| !! | ATATACTTTTGTTCATGTCA+TGG | - | chr4_4:64254687-64254706 | None:intergenic | 25.0% |
| ! | AACAAATAAAGATAAGATGG+CGG | - | chr4_4:64254934-64254953 | None:intergenic | 25.0% |
| ! | GACAACAAATAAAGATAAGA+TGG | - | chr4_4:64254937-64254956 | None:intergenic | 25.0% |
| !!! | TTATTTCTATAATGGTGATG+TGG | + | chr4_4:64254957-64254976 | Msa0694870:intron | 25.0% |
| !! | TATTTCTATAATGGTGATGT+GGG | + | chr4_4:64254958-64254977 | Msa0694870:intron | 25.0% |
| !!! | ATATTAATATAGGAGTACTG+AGG | - | chr4_4:64255075-64255094 | None:intergenic | 25.0% |
| !!! | ACAACTGAGTTGATTTATTA+AGG | - | chr4_4:64255117-64255136 | None:intergenic | 25.0% |
| ! | TAATAAATCAACTCAGTTGT+TGG | + | chr4_4:64255117-64255136 | Msa0694870:intron | 25.0% |
| ! | ATTCAAGACAATGTTATCAA+AGG | + | chr4_4:64255163-64255182 | Msa0694870:intron | 25.0% |
| !!! | ATGTGTTGAATTTGATTTTG+TGG | + | chr4_4:64255473-64255492 | Msa0694870:intron | 25.0% |
| !!! | TGTGTTGAATTTGATTTTGT+GGG | + | chr4_4:64255474-64255493 | Msa0694870:intron | 25.0% |
| !! | ATGGTTCATTACATTTTAGA+TGG | + | chr4_4:64255500-64255519 | Msa0694870:intron | 25.0% |
| ! | GAACCATATGATACTAAATT+AGG | + | chr4_4:64255636-64255655 | Msa0694870:CDS | 25.0% |
| !!! | GTGCATTAATTGCTTTTTTA+AGG | - | chr4_4:64255725-64255744 | None:intergenic | 25.0% |
| ! | TTTGTGTTTACATGTTGTAA+AGG | + | chr4_4:64255804-64255823 | Msa0694870:CDS | 25.0% |
| ! | TTGTGTTTACATGTTGTAAA+GGG | + | chr4_4:64255805-64255824 | Msa0694870:CDS | 25.0% |
| ! | GAGTTTGTTCAATCAAACTT+TGG | + | chr4_4:64252999-64253018 | Msa0694870:CDS | 30.0% |
| CAAAAAGAACAATGAAAGCA+AGG | - | chr4_4:64253278-64253297 | None:intergenic | 30.0% | |
| TCAATTTGATTGTGAAGTGT+CGG | - | chr4_4:64253416-64253435 | None:intergenic | 30.0% | |
| ACACTTCACAATCAAATTGA+AGG | + | chr4_4:64253416-64253435 | Msa0694870:intron | 30.0% | |
| GAAGGGAGTAATAGATTTAA+TGG | + | chr4_4:64253827-64253846 | Msa0694870:intron | 30.0% | |
| ! | GTGAGGAACAAATATAGTTT+TGG | + | chr4_4:64253864-64253883 | Msa0694870:intron | 30.0% |
| AAATATAATTGGGTACCTGA+GGG | + | chr4_4:64253955-64253974 | Msa0694870:intron | 30.0% | |
| ! | TATTGACAATATTTTCCCTC+AGG | - | chr4_4:64253973-64253992 | None:intergenic | 30.0% |
| ! | AATTATCAAAGAGCGTGAAA+GGG | - | chr4_4:64254323-64254342 | None:intergenic | 30.0% |
| ! | AAATTATCAAAGAGCGTGAA+AGG | - | chr4_4:64254324-64254343 | None:intergenic | 30.0% |
| ! | TACTGATTGCTAAAGTCAAA+TGG | + | chr4_4:64254485-64254504 | Msa0694870:intron | 30.0% |
| GTGCAATTATATATCCCATA+TGG | + | chr4_4:64254532-64254551 | Msa0694870:intron | 30.0% | |
| !! | ACACTAATGTCAATTTTGAC+AGG | + | chr4_4:64254717-64254736 | Msa0694870:intron | 30.0% |
| !! | CACTAATGTCAATTTTGACA+GGG | + | chr4_4:64254718-64254737 | Msa0694870:intron | 30.0% |
| !!! | ATTGCTTTCAAGTTTTGTTG+TGG | + | chr4_4:64254821-64254840 | Msa0694870:intron | 30.0% |
| ! | ATTTCTATAATGGTGATGTG+GGG | + | chr4_4:64254959-64254978 | Msa0694870:intron | 30.0% |
| TGATTTATTAAGGTGGATGA+AGG | - | chr4_4:64255107-64255126 | None:intergenic | 30.0% | |
| !! | ACTGAGTTGATTTATTAAGG+TGG | - | chr4_4:64255114-64255133 | None:intergenic | 30.0% |
| ACTAATCACGTTCAAATATG+TGG | + | chr4_4:64255329-64255348 | Msa0694870:intron | 30.0% | |
| !! | AATTTGATTTTGTGGGTCAA+TGG | + | chr4_4:64255481-64255500 | Msa0694870:intron | 30.0% |
| GGAATTAAAGAAGAATGCAA+TGG | + | chr4_4:64255563-64255582 | Msa0694870:CDS | 30.0% | |
| !!! | AGGGAATAGTTTTAATGTTG+AGG | + | chr4_4:64255824-64255843 | Msa0694870:CDS | 30.0% |
| TATTGCAAATGTTGTTCACA+AGG | + | chr4_4:64255857-64255876 | Msa0694870:CDS | 30.0% | |
| GAACTTCATATCCAAATAAG+AGG | + | chr4_4:64255931-64255950 | Msa0694870:CDS | 30.0% | |
| TTCTCCAAAACCAATGAATG+TGG | - | chr4_4:64253060-64253079 | None:intergenic | 35.0% | |
| !!! | ATTGGTTTTGGAGAATGAGA+AGG | + | chr4_4:64253065-64253084 | Msa0694870:CDS | 35.0% |
| TTTGGAGAATGAGAAGGAAA+AGG | + | chr4_4:64253071-64253090 | Msa0694870:CDS | 35.0% | |
| ! | TACCAACCTTTTCAGTAACA+GGG | - | chr4_4:64253107-64253126 | None:intergenic | 35.0% |
| ! | TTACCAACCTTTTCAGTAAC+AGG | - | chr4_4:64253108-64253127 | None:intergenic | 35.0% |
| ! | TGGTAAAGATGATGTTTCTG+AGG | + | chr4_4:64253122-64253141 | Msa0694870:CDS | 35.0% |
| ! | TAGCTTCTTTGAAGAACCAT+AGG | + | chr4_4:64253154-64253173 | Msa0694870:CDS | 35.0% |
| ! | AGCTTCTTTGAAGAACCATA+GGG | + | chr4_4:64253155-64253174 | Msa0694870:CDS | 35.0% |
| AGAAGAAGGGAGAGAATAAA+TGG | + | chr4_4:64253189-64253208 | Msa0694870:CDS | 35.0% | |
| ! | AAGACATACCTTTTGATGAG+TGG | - | chr4_4:64253247-64253266 | None:intergenic | 35.0% |
| AAGAACAATGAAAGCAAGGA+AGG | - | chr4_4:64253274-64253293 | None:intergenic | 35.0% | |
| CTTCACAATCAAATTGAAGG+TGG | + | chr4_4:64253419-64253438 | Msa0694870:intron | 35.0% | |
| ACGATATTGACCCATAGATT+TGG | - | chr4_4:64253491-64253510 | None:intergenic | 35.0% | |
| ! | TGGTAACCATGTCTCTTTTA+GGG | + | chr4_4:64253514-64253533 | Msa0694870:intron | 35.0% |
| TCTATAAAATGCATGTGCTG+TGG | + | chr4_4:64253564-64253583 | Msa0694870:intron | 35.0% | |
| ATATGTGTGAAATGAGCCAA+GGG | - | chr4_4:64253633-64253652 | None:intergenic | 35.0% | |
| AATATGTGTGAAATGAGCCA+AGG | - | chr4_4:64253634-64253653 | None:intergenic | 35.0% | |
| AGAAAATGGGTCAGATATTC+CGG | + | chr4_4:64253801-64253820 | Msa0694870:intron | 35.0% | |
| AGATGGCAATACAAGCTTTA+AGG | + | chr4_4:64253918-64253937 | Msa0694870:intron | 35.0% | |
| CAAATATAATTGGGTACCTG+AGG | + | chr4_4:64253954-64253973 | Msa0694870:intron | 35.0% | |
| TCTTTACAAGTCTCGAGAAT+TGG | - | chr4_4:64254189-64254208 | None:intergenic | 35.0% | |
| GCATCATGGTTGTCATTATA+TGG | + | chr4_4:64254444-64254463 | Msa0694870:intron | 35.0% | |
| ! | ACTCAGTTTGTTTGCCATAT+GGG | - | chr4_4:64254549-64254568 | None:intergenic | 35.0% |
| ! | AACTCAGTTTGTTTGCCATA+TGG | - | chr4_4:64254550-64254569 | None:intergenic | 35.0% |
| !!! | GACAGGGTATTTTAACTTGA+TGG | + | chr4_4:64254734-64254753 | Msa0694870:intron | 35.0% |
| TTTGGAAGGGGAAAAATTGT+TGG | - | chr4_4:64255415-64255434 | None:intergenic | 35.0% | |
| ! | AATCACTTCAGCAAGTATTG+TGG | - | chr4_4:64255532-64255551 | None:intergenic | 35.0% |
| ! | TGAAGTGATTAGTCAAGTGA+AGG | + | chr4_4:64255542-64255561 | Msa0694870:CDS | 35.0% |
| TTCACTTCATCAACTTCTGT+TGG | - | chr4_4:64255612-64255631 | None:intergenic | 35.0% | |
| TTAAGGTCACATAGTATCTC+AGG | - | chr4_4:64255708-64255727 | None:intergenic | 35.0% | |
| ACTTCAACTTCAACTAGTGA+AGG | + | chr4_4:64255743-64255762 | Msa0694870:CDS | 35.0% | |
| AAATGTCAACATTGGAAAGC+AGG | + | chr4_4:64255769-64255788 | Msa0694870:CDS | 35.0% | |
| CACATTCTTCTCCTCTTATT+TGG | - | chr4_4:64255945-64255964 | None:intergenic | 35.0% | |
| !! | GATAACTTTGGAGCTTCCAA+TGG | + | chr4_4:64253021-64253040 | Msa0694870:CDS | 40.0% |
| !!! | ACCACCACATTCATTGGTTT+TGG | + | chr4_4:64253053-64253072 | Msa0694870:CDS | 40.0% |
| TCCAAAACCAATGAATGTGG+TGG | - | chr4_4:64253057-64253076 | None:intergenic | 40.0% | |
| !! | GATGATGTTTCTGAGGTGAA+AGG | + | chr4_4:64253129-64253148 | Msa0694870:CDS | 40.0% |
| GAGAGAATAAATGGTCACCT+TGG | + | chr4_4:64253198-64253217 | Msa0694870:CDS | 40.0% | |
| TGTAGCTTCCACTCATCAAA+AGG | + | chr4_4:64253236-64253255 | Msa0694870:CDS | 40.0% | |
| ! | CTGGTAACCATGTCTCTTTT+AGG | + | chr4_4:64253513-64253532 | Msa0694870:intron | 40.0% |
| ATCAAGCCCTAAAAGAGACA+TGG | - | chr4_4:64253523-64253542 | None:intergenic | 40.0% | |
| GAAAATGGGTCAGATATTCC+GGG | + | chr4_4:64253802-64253821 | Msa0694870:intron | 40.0% | |
| TGGAAAGTTGAAATTGGGTG+AGG | + | chr4_4:64253847-64253866 | Msa0694870:intron | 40.0% | |
| !! | CAATACAAGCTTTAAGGCAG+AGG | + | chr4_4:64253924-64253943 | Msa0694870:intron | 40.0% |
| AAGGGATTCTGATTGCATCA+TGG | + | chr4_4:64254430-64254449 | Msa0694870:intron | 40.0% | |
| ATGTCATGGAGACCTAATCA+AGG | - | chr4_4:64254673-64254692 | None:intergenic | 40.0% | |
| GGAAAGAGGAAGACAACAAA+TGG | - | chr4_4:64255054-64255073 | None:intergenic | 40.0% | |
| !! | TATAGGAGTACTGAGGAAAG+AGG | - | chr4_4:64255068-64255087 | None:intergenic | 40.0% |
| ! | TGATTAGTCATGTGTCACAC+GGG | - | chr4_4:64255317-64255336 | None:intergenic | 40.0% |
| ! | GTGATTAGTCATGTGTCACA+CGG | - | chr4_4:64255318-64255337 | None:intergenic | 40.0% |
| AATGCAATGGAAGCAAGCAA+AGG | + | chr4_4:64255576-64255595 | Msa0694870:CDS | 40.0% | |
| GAAGGCAGAAATGTCAACAT+TGG | + | chr4_4:64255761-64255780 | Msa0694870:CDS | 40.0% | |
| AAATGTTGTTCACAAGGCAC+TGG | + | chr4_4:64255863-64255882 | Msa0694870:CDS | 40.0% | |
| GGAAAAGGCTTCTAACTCAA+TGG | + | chr4_4:64255896-64255915 | Msa0694870:CDS | 40.0% | |
| ! | TGGTGGTGATGACAATCCAT+TGG | - | chr4_4:64253040-64253059 | None:intergenic | 45.0% |
| GTCATCACCACCACATTCAT+TGG | + | chr4_4:64253047-64253066 | Msa0694870:CDS | 45.0% | |
| GGAGAATGAGAAGGAAAAGG+CGG | + | chr4_4:64253074-64253093 | Msa0694870:CDS | 45.0% | |
| TGCCCTGTTACTGAAAAGGT+TGG | + | chr4_4:64253102-64253121 | Msa0694870:CDS | 45.0% | |
| CAAGACCACGTAATGTTCCA+AGG | - | chr4_4:64253218-64253237 | None:intergenic | 45.0% | |
| CTATGGGTCAATATCGTGTC+TGG | + | chr4_4:64253494-64253513 | Msa0694870:intron | 45.0% | |
| ATGTGCTGTGGAGATGAGAA+AGG | + | chr4_4:64253576-64253595 | Msa0694870:intron | 45.0% | |
| TGTGCTGTGGAGATGAGAAA+GGG | + | chr4_4:64253577-64253596 | Msa0694870:intron | 45.0% | |
| CTCAGATAAATTGGGACGGA+GGG | - | chr4_4:64253610-64253629 | None:intergenic | 45.0% | |
| AGGGCTCAGATAAATTGGGA+CGG | - | chr4_4:64253614-64253633 | None:intergenic | 45.0% | |
| TCCCAATTTATCTGAGCCCT+TGG | + | chr4_4:64253614-64253633 | Msa0694870:intron | 45.0% | |
| GCCAAGGGCTCAGATAAATT+GGG | - | chr4_4:64253618-64253637 | None:intergenic | 45.0% | |
| AGCCAAGGGCTCAGATAAAT+TGG | - | chr4_4:64253619-64253638 | None:intergenic | 45.0% | |
| ATCTATTACTCCCTTCGTCC+CGG | - | chr4_4:64253823-64253842 | None:intergenic | 45.0% | |
| CTTCTTCTATGGTCCGAAAC+TGG | + | chr4_4:64254595-64254614 | Msa0694870:intron | 45.0% | |
| !!! | AGTTTTGTTGTGGACATGCC+AGG | + | chr4_4:64254831-64254850 | Msa0694870:intron | 45.0% |
| ATACCATCCAGAAGAACACC+TGG | - | chr4_4:64254852-64254871 | None:intergenic | 45.0% | |
| GGTCACATAGTATCTCAGGT+TGG | - | chr4_4:64255704-64255723 | None:intergenic | 45.0% | |
| ACTGGATTCTGTGCTGGAAA+AGG | + | chr4_4:64255881-64255900 | Msa0694870:CDS | 45.0% | |
| !!! | TAAAAAAAATGATTAAATTT+TGG | - | chr4_4:64255260-64255279 | None:intergenic | 5.0% |
| !!! | AAATTTAATCATTTTTTTTA+CGG | + | chr4_4:64255260-64255279 | Msa0694870:intron | 5.0% |
| !!! | AAGTAATTATATATTTTTTT+TGG | - | chr4_4:64255433-64255452 | None:intergenic | 5.0% |
| GAATGAGAAGGAAAAGGCGG+TGG | + | chr4_4:64253077-64253096 | Msa0694870:CDS | 50.0% | |
| ! | GGAGTGCCCTGTTACTGAAA+AGG | + | chr4_4:64253098-64253117 | Msa0694870:CDS | 50.0% |
| AGAACCATAGGGAAGCAGAG+AGG | + | chr4_4:64253166-64253185 | Msa0694870:CDS | 50.0% | |
| TTCTCCTCTCTGCTTCCCTA+TGG | - | chr4_4:64253173-64253192 | None:intergenic | 50.0% | |
| GGAAGCAGAGAGGAGAAGAA+GGG | + | chr4_4:64253176-64253195 | Msa0694870:CDS | 50.0% | |
| GGTCACCTTGGAACATTACG+TGG | + | chr4_4:64253210-64253229 | Msa0694870:CDS | 50.0% | |
| GCTCAGATAAATTGGGACGG+AGG | - | chr4_4:64253611-64253630 | None:intergenic | 50.0% | |
| GTCAGATATTCCGGGACGAA+GGG | + | chr4_4:64253810-64253829 | Msa0694870:intron | 50.0% | |
| ATGCCAGGTGTTCTTCTGGA+TGG | + | chr4_4:64254846-64254865 | Msa0694870:intron | 50.0% | |
| CACACGGGTGTACATAGAGT+GGG | - | chr4_4:64255302-64255321 | None:intergenic | 50.0% | |
| TCACACGGGTGTACATAGAG+TGG | - | chr4_4:64255303-64255322 | None:intergenic | 50.0% | |
| AGATGCATGGCTGCATGAAG+AGG | - | chr4_4:64255985-64256004 | None:intergenic | 50.0% | |
| GGGAAGCAGAGAGGAGAAGA+AGG | + | chr4_4:64253175-64253194 | Msa0694870:CDS | 55.0% | |
| GGTCAGATATTCCGGGACGA+AGG | + | chr4_4:64253809-64253828 | Msa0694870:intron | 55.0% | |
| GGACATGCCAGGTGTTCTTC+TGG | + | chr4_4:64254842-64254861 | Msa0694870:intron | 55.0% | |
| !! | CAAGGCACTGGATTCTGTGC+TGG | + | chr4_4:64255875-64255894 | Msa0694870:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 64252949 | 64256016 | 64252949 | ID=Msa0694870;Name=Msa0694870 |
| chr4_4 | mRNA | 64252949 | 64256016 | 64252949 | ID=Msa0694870-mRNA-1;Parent=Msa0694870;Name=Msa0694870-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|1|1|2|0|268 |
| chr4_4 | exon | 64252949 | 64253257 | 64252949 | ID=Msa0694870-mRNA-1:exon:18361;Parent=Msa0694870-mRNA-1 |
| chr4_4 | exon | 64255519 | 64256016 | 64255519 | ID=Msa0694870-mRNA-1:exon:18362;Parent=Msa0694870-mRNA-1 |
| chr4_4 | CDS | 64252949 | 64253257 | 64252949 | ID=Msa0694870-mRNA-1:cds;Parent=Msa0694870-mRNA-1 |
| chr4_4 | CDS | 64255519 | 64256016 | 64255519 | ID=Msa0694870-mRNA-1:cds;Parent=Msa0694870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
