Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652640 | XP_003627885.2 | 86.667 | 135 | 12 | 1 | 121 | 249 | 205 | 339 | 7.96e-68 | 223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652640 | sp|B3H6Z8|KN14J_ARATH | 53.125 | 96 | 41 | 3 | 41 | 134 | 45 | 138 | 1.16e-22 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031670 | Msa0652640 | 0.803382 | 3.580781e-49 | -8.615850e-47 |
| Msa0652640 | Msa0945290 | 0.930733 | 1.064597e-93 | -8.615850e-47 |
| Msa0652640 | Msa1117980 | 0.817498 | 3.197293e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652640 | MtrunA17_Chr8g0353271 | 86.667 | 135 | 12 | 1 | 121 | 249 | 205 | 339 | 7.32e-72 | 223 |
| Msa0652640 | MtrunA17_Chr8g0386901 | 92.308 | 91 | 7 | 0 | 33 | 123 | 14 | 104 | 2.39e-50 | 174 |
| Msa0652640 | MtrunA17_Chr8g0390981 | 44.828 | 87 | 43 | 1 | 41 | 122 | 46 | 132 | 9.38e-16 | 76.3 |
| Msa0652640 | MtrunA17_Chr4g0004131 | 86.486 | 37 | 5 | 0 | 1 | 37 | 35 | 71 | 3.11e-15 | 74.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652640 | AT1G63640.2 | 53.125 | 96 | 41 | 3 | 41 | 134 | 45 | 138 | 1.14e-23 | 100 |
| Msa0652640 | AT1G63640.1 | 53.125 | 96 | 41 | 3 | 41 | 134 | 45 | 138 | 1.17e-23 | 100 |
| Msa0652640 | AT1G63640.4 | 53.125 | 96 | 41 | 3 | 41 | 134 | 45 | 138 | 1.17e-23 | 100 |
| Msa0652640 | AT1G63640.5 | 53.125 | 96 | 41 | 3 | 41 | 134 | 35 | 128 | 1.18e-23 | 100 |
| Msa0652640 | AT1G63640.3 | 53.125 | 96 | 41 | 3 | 41 | 134 | 45 | 138 | 1.22e-23 | 100 |
| Msa0652640 | AT5G41310.1 | 54.667 | 75 | 31 | 2 | 41 | 113 | 46 | 119 | 1.68e-18 | 85.1 |
| Msa0652640 | AT1G08315.1 | 48.598 | 107 | 46 | 2 | 121 | 218 | 205 | 311 | 7.95e-18 | 81.6 |
Find 68 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCCGTATTATGTACCATTT+TGG | 0.146642 | 4_3:-60353737 | Msa0652640:CDS |
| TCTGGTGGCCTTGGATGAAC+TGG | 0.240207 | 4_3:-60353463 | Msa0652640:CDS |
| GATGAGTGTCGAAAGGTTTC+TGG | 0.253174 | 4_3:-60353481 | Msa0652640:CDS |
| GAGGCGTTTAAGAATGTTTC+TGG | 0.264257 | 4_3:-60352455 | Msa0652640:CDS |
| TTCTTCCTCAGAAATTTCTA+AGG | 0.279408 | 4_3:+60353783 | None:intergenic |
| AAATTTCTGAGGAAGAATTA+AGG | 0.283238 | 4_3:-60353777 | Msa0652640:CDS |
| TCCTTGTCCAATGCTTGCTT+TGG | 0.284828 | 4_3:+60354358 | None:intergenic |
| TCTAAGGGCATATTAAAGTT+AGG | 0.338119 | 4_3:+60353799 | None:intergenic |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 4_3:-60352275 | Msa0652640:CDS |
| TTGTCCAATGCTTGCTTTGG+AGG | 0.347732 | 4_3:+60354361 | None:intergenic |
| GCATCTCTGATATAGGTTGC+TGG | 0.350294 | 4_3:-60352494 | Msa0652640:intron |
| AGGAACCAGTTTGTCCAAAA+TGG | 0.352229 | 4_3:+60353723 | None:intergenic |
| CTTGGATGAACTGGGATTAT+CGG | 0.369631 | 4_3:-60353454 | Msa0652640:CDS |
| CGAAAGGTTTCTGGTGGCCT+TGG | 0.381864 | 4_3:-60353472 | Msa0652640:CDS |
| GAGCCTTCTATTAGTCGTTA+TGG | 0.396409 | 4_3:-60354319 | Msa0652640:CDS |
| AATTTCTGAGGAAGAATTAA+GGG | 0.400000 | 4_3:-60353776 | Msa0652640:CDS |
| TTTAAGAATGTTTCTGGTGT+TGG | 0.404185 | 4_3:-60352449 | Msa0652640:CDS |
| CACGGTGATGTTTGTAATCA+TGG | 0.407379 | 4_3:-60352188 | Msa0652640:CDS |
| CGCGTTGGCGTTTGGTGCCA+TGG | 0.410736 | 4_3:-60352303 | Msa0652640:CDS |
| GTAAGAGACGCGTTGGCGTT+TGG | 0.441043 | 4_3:-60352311 | Msa0652640:CDS |
| TGTTTCTGGTGTTGGAGTGC+TGG | 0.453944 | 4_3:-60352441 | Msa0652640:CDS |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.455209 | 4_3:-60352264 | Msa0652640:CDS |
| TTGGATGAACTGGGATTATC+GGG | 0.455960 | 4_3:-60353453 | Msa0652640:CDS |
| CTGGTGGCCTTGGATGAACT+GGG | 0.456748 | 4_3:-60353462 | Msa0652640:CDS |
| GTCCAAAATGGTACATAATA+CGG | 0.457118 | 4_3:+60353735 | None:intergenic |
| TTACCATAACGACTAATAGA+AGG | 0.467287 | 4_3:+60354316 | None:intergenic |
| CAAACTGGTTCCTGGTTCGC+TGG | 0.475497 | 4_3:-60353713 | Msa0652640:CDS |
| CGCTTACACCTCTGATAACA+TGG | 0.478669 | 4_3:-60353837 | Msa0652640:CDS |
| TTGGCGTTTGGTGCCATGGA+TGG | 0.501029 | 4_3:-60352299 | Msa0652640:CDS |
| AAGTGTTAAGGAGCAGAGTA+AGG | 0.501873 | 4_3:-60352252 | Msa0652640:CDS |
| GGGATTTGAATTGTCAGAGC+TGG | 0.502158 | 4_3:-60353433 | Msa0652640:CDS |
| CCTACTACCTCCAGCGAACC+AGG | 0.505351 | 4_3:+60353703 | None:intergenic |
| TGTGGTGGAGATGTGGTGGC+TGG | 0.510838 | 4_3:-60352338 | Msa0652640:CDS |
| CTGGTTCGAGTACGAGGACG+AGG | 0.519631 | 4_3:-60352397 | Msa0652640:CDS |
| TCTTCCTCAGAAATTTCTAA+GGG | 0.522851 | 4_3:+60353784 | None:intergenic |
| AAGAATTAAGGGCATGCTTG+AGG | 0.524021 | 4_3:-60353765 | Msa0652640:CDS |
| AGAATTAAGGGCATGCTTGA+GGG | 0.524459 | 4_3:-60353764 | Msa0652640:CDS |
| AGTCGTTATGGTAATGATGA+AGG | 0.534093 | 4_3:-60354307 | Msa0652640:intron |
| TGAATTGTCAGAGCTGGAGC+AGG | 0.536848 | 4_3:-60353427 | Msa0652640:intron |
| AACATCAGCAATTCCATCCA+TGG | 0.543264 | 4_3:+60352286 | None:intergenic |
| GCAACCTCCAAAGCAAGCAT+TGG | 0.553495 | 4_3:-60354365 | Msa0652640:CDS |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 4_3:-60352345 | Msa0652640:CDS |
| AGAAACCTTTCGACACTCAT+CGG | 0.560922 | 4_3:+60353483 | None:intergenic |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 4_3:-60352353 | Msa0652640:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 4_3:-60352356 | Msa0652640:CDS |
| GATCTACTAGATCTTGCTAC+TGG | 0.569155 | 4_3:-60352416 | Msa0652640:CDS |
| ATGTTATCAGAGGTGTAAGC+GGG | 0.569812 | 4_3:+60353839 | None:intergenic |
| GACGAGGGAAAATGCAGTGT+CGG | 0.572198 | 4_3:-60352381 | Msa0652640:CDS |
| TTGCTACTGGTTCGAGTACG+AGG | 0.579153 | 4_3:-60352403 | Msa0652640:CDS |
| CGATAATCCCAGTTCATCCA+AGG | 0.585497 | 4_3:+60353455 | None:intergenic |
| TGGAGATGTAAGAGACGCGT+TGG | 0.588827 | 4_3:-60352318 | Msa0652640:CDS |
| GATATAGGTTGCTGGTTGCG+AGG | 0.595916 | 4_3:-60352486 | Msa0652640:intron |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 4_3:-60352224 | Msa0652640:CDS |
| TTAAGGGCATGCTTGAGGGA+TGG | 0.601904 | 4_3:-60353760 | Msa0652640:CDS |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 4_3:-60352206 | Msa0652640:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 4_3:-60352342 | Msa0652640:CDS |
| TTCTGGTGTTGGAGTGCTGG+CGG | 0.616859 | 4_3:-60352438 | Msa0652640:CDS |
| TATGCCCTTAGAAATTTCTG+AGG | 0.621828 | 4_3:-60353788 | Msa0652640:CDS |
| ACATTTATCCATGTTATCAG+AGG | 0.625892 | 4_3:+60353829 | None:intergenic |
| TCCAAAGCAAGCATTGGACA+AGG | 0.628826 | 4_3:-60354359 | Msa0652640:CDS |
| GAGTGTCGAAAGGTTTCTGG+TGG | 0.642393 | 4_3:-60353478 | Msa0652640:CDS |
| ATGAACCGATGAGTGTCGAA+AGG | 0.647445 | 4_3:-60353488 | Msa0652640:CDS |
| GAGAGACGGCCAGATGACGA+AGG | 0.648051 | 4_3:-60354958 | None:intergenic |
| CATGTTATCAGAGGTGTAAG+CGG | 0.665124 | 4_3:+60353838 | None:intergenic |
| ACTGGTTCCTGGTTCGCTGG+AGG | 0.665782 | 4_3:-60353710 | Msa0652640:intron |
| TCTTTGATGAATGAAGATAG+TGG | 0.667178 | 4_3:-60352131 | Msa0652640:CDS |
| TGGTTGCGAGGAAAGTGTTG+AGG | 0.674105 | 4_3:-60352474 | Msa0652640:CDS |
| TGGTTCGAGTACGAGGACGA+GGG | 0.676342 | 4_3:-60352396 | Msa0652640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATAATAAAATAAATTGAA+TGG | - | chr4_3:60353965-60353984 | Msa0652640:intron | 10.0% |
| !! | CTTAAATTTAAGTAAAAAAA+TGG | - | chr4_3:60354285-60354304 | Msa0652640:intron | 10.0% |
| !!! | TAAGAAAAATTGTGTTTTTT+AGG | - | chr4_3:60352440-60352459 | Msa0652640:CDS | 15.0% |
| !!! | AAGAAAAATTGTGTTTTTTA+GGG | - | chr4_3:60352441-60352460 | Msa0652640:CDS | 15.0% |
| !!! | TACTAATTATAAAATTTTGC+AGG | - | chr4_3:60354042-60354061 | Msa0652640:intron | 15.0% |
| !!! | ACTAATTATAAAATTTTGCA+GGG | - | chr4_3:60354043-60354062 | Msa0652640:intron | 15.0% |
| !!! | TAGAATTTGCTTATATATTA+TGG | + | chr4_3:60354325-60354344 | None:intergenic | 15.0% |
| !!! | TGATATCAGTTATTTTGTTT+CGG | - | chr4_3:60352337-60352356 | Msa0652640:CDS | 20.0% |
| !!! | TGTTTTACAATTGAATTGAA+TGG | - | chr4_3:60352513-60352532 | Msa0652640:intron | 20.0% |
| !!! | AATAAGTTGAAAAAAGCTTA+TGG | + | chr4_3:60352922-60352941 | None:intergenic | 20.0% |
| !! | ATCTTAATCAAATTATACAG+TGG | + | chr4_3:60353837-60353856 | None:intergenic | 20.0% |
| !! | TTATTATTCAACATTATGCA+CGG | + | chr4_3:60353954-60353973 | None:intergenic | 20.0% |
| !! | TATTAAGAATTTACTTCCTA+CGG | - | chr4_3:60354261-60354280 | Msa0652640:intron | 20.0% |
| !! | TTTTAACGGGACAATATTTA+CGG | + | chr4_3:60352184-60352203 | None:intergenic | 25.0% |
| !!! | AGGGTTTTATTTTGATTTTG+AGG | - | chr4_3:60352460-60352479 | Msa0652640:CDS | 25.0% |
| !!! | GTTTTATTTTGATTTTGAGG+TGG | - | chr4_3:60352463-60352482 | Msa0652640:CDS | 25.0% |
| !!! | GTTTCTGGAATTTTTTCTAA+AGG | - | chr4_3:60352607-60352626 | Msa0652640:intron | 25.0% |
| !!! | TCCTATTTAGATTAGCTTAT+TGG | - | chr4_3:60352827-60352846 | Msa0652640:intron | 25.0% |
| ! | TCCAATAAGCTAATCTAAAT+AGG | + | chr4_3:60352831-60352850 | None:intergenic | 25.0% |
| ! | ATAGTTAATCAAAAGCGAAA+AGG | - | chr4_3:60353055-60353074 | Msa0652640:intron | 25.0% |
| ! | TAGTTAATCAAAAGCGAAAA+GGG | - | chr4_3:60353056-60353075 | Msa0652640:intron | 25.0% |
| !! | CTGGATTTTTATATGGTTTT+AGG | - | chr4_3:60353198-60353217 | Msa0652640:intron | 25.0% |
| !! | AAATTTCTGAGGAAGAATTA+AGG | - | chr4_3:60353286-60353305 | Msa0652640:intron | 25.0% |
| !! | AATTTCTGAGGAAGAATTAA+GGG | - | chr4_3:60353287-60353306 | Msa0652640:intron | 25.0% |
| ! | TAATGAATACATAACTGCTA+GGG | + | chr4_3:60353440-60353459 | None:intergenic | 25.0% |
| ! | TTAATGAATACATAACTGCT+AGG | + | chr4_3:60353441-60353460 | None:intergenic | 25.0% |
| ! | TCAGCTCAATTAATAAACAA+TGG | + | chr4_3:60353467-60353486 | None:intergenic | 25.0% |
| !!! | AAGAATGCATTTTTAACTTC+AGG | - | chr4_3:60353537-60353556 | Msa0652640:intron | 25.0% |
| !!! | AGAATGCATTTTTAACTTCA+GGG | - | chr4_3:60353538-60353557 | Msa0652640:intron | 25.0% |
| ! | TTCAAATTACATTGTGCATA+AGG | + | chr4_3:60353673-60353692 | None:intergenic | 25.0% |
| ! | TTACTTAAATTTAAGTCCGT+AGG | + | chr4_3:60354280-60354299 | None:intergenic | 25.0% |
| ! | AGTAAAAAAATGGTCATGTT+TGG | - | chr4_3:60354295-60354314 | Msa0652640:intron | 25.0% |
| ! | CAAAAATCAGTCAATTCAAA+TGG | - | chr4_3:60354410-60354429 | Msa0652640:intron | 25.0% |
| ! | CTATCTCATTGAATTACTTA+GGG | + | chr4_3:60354496-60354515 | None:intergenic | 25.0% |
| ! | TCTTATCTAATGTAACTGAT+AGG | - | chr4_3:60354534-60354553 | Msa0652640:intron | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | - | chr4_3:60354788-60354807 | Msa0652640:intron | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | - | chr4_3:60354799-60354818 | Msa0652640:intron | 25.0% |
| !!! | TCGTTTTTGTTTTCATTCTC+CGG | - | chr4_3:60352154-60352173 | Msa0652640:CDS | 30.0% |
| !!! | AGCACGATTGTTAGTTTTAA+CGG | + | chr4_3:60352198-60352217 | None:intergenic | 30.0% |
| !!! | TCCTGGATTTTTTTAATCGA+TGG | - | chr4_3:60352375-60352394 | Msa0652640:CDS | 30.0% |
| ! | ACCATCGATTAAAAAAATCC+AGG | + | chr4_3:60352379-60352398 | None:intergenic | 30.0% |
| TACAATTGAATTGAATGGAG+TGG | - | chr4_3:60352518-60352537 | Msa0652640:intron | 30.0% | |
| TGTTGAATTGAATCTGATTG+TGG | - | chr4_3:60352564-60352583 | Msa0652640:intron | 30.0% | |
| ATTGAATCTGATTGTGGATT+TGG | - | chr4_3:60352570-60352589 | Msa0652640:intron | 30.0% | |
| TTGAATCTGATTGTGGATTT+GGG | - | chr4_3:60352571-60352590 | Msa0652640:intron | 30.0% | |
| !!! | TGGATTTGGGTTTTTTTTTG+TGG | - | chr4_3:60352584-60352603 | Msa0652640:intron | 30.0% |
| !!! | GGATTTGGGTTTTTTTTTGT+GGG | - | chr4_3:60352585-60352604 | Msa0652640:intron | 30.0% |
| !! | TTTCTAAAGGTTGAGTCTTT+TGG | - | chr4_3:60352620-60352639 | Msa0652640:intron | 30.0% |
| !! | TTCTAAAGGTTGAGTCTTTT+GGG | - | chr4_3:60352621-60352640 | Msa0652640:intron | 30.0% |
| TTTGGGGAATTGAAATTGAA+AGG | - | chr4_3:60352638-60352657 | Msa0652640:intron | 30.0% | |
| TTACCATAACGACTAATAGA+AGG | + | chr4_3:60352750-60352769 | None:intergenic | 30.0% | |
| GCTTATTGGAGCTTATTTAT+TGG | - | chr4_3:60352841-60352860 | Msa0652640:intron | 30.0% | |
| AGTGTGAATCAAATTGAAGA+AGG | - | chr4_3:60353108-60353127 | Msa0652640:intron | 30.0% | |
| !! | ACACTGACTGGATTTTTATA+TGG | - | chr4_3:60353191-60353210 | Msa0652640:intron | 30.0% |
| ACATTTATCCATGTTATCAG+AGG | + | chr4_3:60353237-60353256 | None:intergenic | 30.0% | |
| ! | TCTAAGGGCATATTAAAGTT+AGG | + | chr4_3:60353267-60353286 | None:intergenic | 30.0% |
| TCTTCCTCAGAAATTTCTAA+GGG | + | chr4_3:60353282-60353301 | None:intergenic | 30.0% | |
| TTCTTCCTCAGAAATTTCTA+AGG | + | chr4_3:60353283-60353302 | None:intergenic | 30.0% | |
| ! | ATCCGTATTATGTACCATTT+TGG | - | chr4_3:60353326-60353345 | Msa0652640:intron | 30.0% |
| GTCCAAAATGGTACATAATA+CGG | + | chr4_3:60353331-60353350 | None:intergenic | 30.0% | |
| AATGAATACATAACTGCTAG+GGG | + | chr4_3:60353439-60353458 | None:intergenic | 30.0% | |
| ! | ATGCATTCTTTAGAAGAAAG+AGG | + | chr4_3:60353527-60353546 | None:intergenic | 30.0% |
| !! | GTTACGACTTTTGCTATATT+TGG | - | chr4_3:60353706-60353725 | Msa0652640:intron | 30.0% |
| !! | CTTTTGCTATATTTGGCAAT+TGG | - | chr4_3:60353713-60353732 | Msa0652640:CDS | 30.0% |
| CTTCTTCATTGTATGACAAA+GGG | + | chr4_3:60353812-60353831 | None:intergenic | 30.0% | |
| TCTTCTTCATTGTATGACAA+AGG | + | chr4_3:60353813-60353832 | None:intergenic | 30.0% | |
| ACATAGTGCAGTAGAAAAAA+TGG | + | chr4_3:60354015-60354034 | None:intergenic | 30.0% | |
| AAAAAAATGGTCATGTTTGG+TGG | - | chr4_3:60354298-60354317 | Msa0652640:intron | 30.0% | |
| TAGCTTGACATGTTTATGAA+TGG | - | chr4_3:60354343-60354362 | Msa0652640:CDS | 30.0% | |
| CTATCTCATTGTATTGCTTA+GGG | + | chr4_3:60354444-60354463 | None:intergenic | 30.0% | |
| GCTATCTCATTGAATTACTT+AGG | + | chr4_3:60354497-60354516 | None:intergenic | 30.0% | |
| TAAGAGTTAGTTGTTCTAAC+TGG | + | chr4_3:60354519-60354538 | None:intergenic | 30.0% | |
| ! | AACTTTTGCATCTCTGATAT+AGG | - | chr4_3:60354562-60354581 | Msa0652640:intron | 30.0% |
| !! | TTTAAGAATGTTTCTGGTGT+TGG | - | chr4_3:60354614-60354633 | Msa0652640:intron | 30.0% |
| TCTTTGATGAATGAAGATAG+TGG | - | chr4_3:60354932-60354951 | Msa0652640:intron | 30.0% | |
| GAAAACAAAAACGACATGCA+TGG | + | chr4_3:60352148-60352167 | None:intergenic | 35.0% | |
| !!! | TTTTGTTTTCATTCTCCGGT+CGG | - | chr4_3:60352158-60352177 | Msa0652640:CDS | 35.0% |
| !!! | GCACGATTGTTAGTTTTAAC+GGG | + | chr4_3:60352197-60352216 | None:intergenic | 35.0% |
| TGTTCTTGAGATGTCTTCTA+TGG | - | chr4_3:60352217-60352236 | Msa0652640:CDS | 35.0% | |
| TGAATATACCTGAGATTAGG+AGG | + | chr4_3:60352293-60352312 | None:intergenic | 35.0% | |
| TCATCATCCAGAAAGATTCA+AGG | + | chr4_3:60352320-60352339 | None:intergenic | 35.0% | |
| !!! | GGTTTTGTAGTTGTTTTTCC+TGG | - | chr4_3:60352358-60352377 | Msa0652640:CDS | 35.0% |
| ! | AATTGAATGGAGTGGTTCTA+GGG | - | chr4_3:60352526-60352545 | Msa0652640:intron | 35.0% |
| !!! | GGTTTTTTTTTGTGGGTTTC+TGG | - | chr4_3:60352592-60352611 | Msa0652640:intron | 35.0% |
| ! | TCTAAAGGTTGAGTCTTTTG+GGG | - | chr4_3:60352622-60352641 | Msa0652640:intron | 35.0% |
| ACACTGTTGCAAATTTCTGT+AGG | - | chr4_3:60352662-60352681 | Msa0652640:intron | 35.0% | |
| CACTGTTGCAAATTTCTGTA+GGG | - | chr4_3:60352663-60352682 | Msa0652640:intron | 35.0% | |
| ACTGTTGCAAATTTCTGTAG+GGG | - | chr4_3:60352664-60352683 | Msa0652640:intron | 35.0% | |
| ! | AGTCGTTATGGTAATGATGA+AGG | - | chr4_3:60352756-60352775 | Msa0652640:intron | 35.0% |
| !! | GTTGTTTTCAGAAGCTATCT+TGG | + | chr4_3:60352957-60352976 | None:intergenic | 35.0% |
| !! | ACAACTTGCTTTTGTCTTTG+AGG | - | chr4_3:60353133-60353152 | Msa0652640:intron | 35.0% |
| TATGCCCTTAGAAATTTCTG+AGG | - | chr4_3:60353275-60353294 | Msa0652640:intron | 35.0% | |
| ! | ATGTACCATTTTGGACAAAC+TGG | - | chr4_3:60353335-60353354 | Msa0652640:intron | 35.0% |
| !!! | CATTTTTAACTTCAGGGAAG+TGG | - | chr4_3:60353544-60353563 | Msa0652640:intron | 35.0% |
| AATTGGTTGTCCTTGATTCA+AGG | - | chr4_3:60353730-60353749 | Msa0652640:CDS | 35.0% | |
| ATTGGTTGTCCTTGATTCAA+GGG | - | chr4_3:60353731-60353750 | Msa0652640:CDS | 35.0% | |
| TTGCCAATGTACAGACAAAT+GGG | + | chr4_3:60353773-60353792 | None:intergenic | 35.0% | |
| ATTGCCAATGTACAGACAAA+TGG | + | chr4_3:60353774-60353793 | None:intergenic | 35.0% | |
| ATTTGTCTGTACATTGGCAA+TGG | - | chr4_3:60353773-60353792 | Msa0652640:CDS | 35.0% | |
| AGCATGATATTTGCTTCAGT+TGG | - | chr4_3:60353878-60353897 | Msa0652640:intron | 35.0% | |
| ! | CTTCAGTTGGATTTCTTTTG+TGG | - | chr4_3:60353891-60353910 | Msa0652640:intron | 35.0% |
| ! | TAAAATTTTGCAGGGATCCA+TGG | - | chr4_3:60354051-60354070 | Msa0652640:intron | 35.0% |
| ! | AAAATATCTGAGGTTGTTCC+AGG | - | chr4_3:60354134-60354153 | Msa0652640:intron | 35.0% |
| TTCAACATAACCATCAACAG+CGG | + | chr4_3:60354236-60354255 | None:intergenic | 35.0% | |
| !! | GTTGATGGTTATGTTGAATC+AGG | - | chr4_3:60354238-60354257 | Msa0652640:intron | 35.0% |
| ATTGTATTGCTTAGGGCTTA+GGG | + | chr4_3:60354437-60354456 | None:intergenic | 35.0% | |
| GCTATCTCATTGTATTGCTT+AGG | + | chr4_3:60354445-60354464 | None:intergenic | 35.0% | |
| AAGCAATACAATGAGATAGC+CGG | - | chr4_3:60354445-60354464 | Msa0652640:intron | 35.0% | |
| TAGAACAACTAACTCCCAAA+TGG | - | chr4_3:60354469-60354488 | Msa0652640:intron | 35.0% | |
| AGAACAACTAACTCCCAAAT+GGG | - | chr4_3:60354470-60354489 | Msa0652640:intron | 35.0% | |
| TTGCTTAATCTTGTGAGATG+TGG | - | chr4_3:60354707-60354726 | Msa0652640:intron | 35.0% | |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | - | chr4_3:60354835-60354854 | Msa0652640:intron | 35.0% |
| !!! | GGTAATGTCGTTTTGAATAG+TGG | - | chr4_3:60354896-60354915 | Msa0652640:intron | 35.0% |
| AGATTAGGAGGTTGTTGATC+TGG | + | chr4_3:60352281-60352300 | None:intergenic | 40.0% | |
| ATCAACAACCTCCTAATCTC+AGG | - | chr4_3:60352282-60352301 | Msa0652640:CDS | 40.0% | |
| GCGTGAATATACCTGAGATT+AGG | + | chr4_3:60352296-60352315 | None:intergenic | 40.0% | |
| GAATTGAATGGAGTGGTTCT+AGG | - | chr4_3:60352525-60352544 | Msa0652640:intron | 40.0% | |
| !!! | TGGTTCTAGGGTTTTGAAAG+TGG | - | chr4_3:60352538-60352557 | Msa0652640:intron | 40.0% |
| CTGTTGCAAATTTCTGTAGG+GGG | - | chr4_3:60352665-60352684 | Msa0652640:intron | 40.0% | |
| GAGCCTTCTATTAGTCGTTA+TGG | - | chr4_3:60352744-60352763 | Msa0652640:intron | 40.0% | |
| ACTAATGCTGCTATGAGTTC+AGG | + | chr4_3:60352786-60352805 | None:intergenic | 40.0% | |
| ! | ATGTTATCAGAGGTGTAAGC+GGG | + | chr4_3:60353227-60353246 | None:intergenic | 40.0% |
| ! | CATGTTATCAGAGGTGTAAG+CGG | + | chr4_3:60353228-60353247 | None:intergenic | 40.0% |
| ! | AAGAATTAAGGGCATGCTTG+AGG | - | chr4_3:60353298-60353317 | Msa0652640:intron | 40.0% |
| ! | AGAATTAAGGGCATGCTTGA+GGG | - | chr4_3:60353299-60353318 | Msa0652640:intron | 40.0% |
| AGGAACCAGTTTGTCCAAAA+TGG | + | chr4_3:60353343-60353362 | None:intergenic | 40.0% | |
| !! | ATTTTGGACAAACTGGTTCC+TGG | - | chr4_3:60353342-60353361 | Msa0652640:intron | 40.0% |
| AGAAACCTTTCGACACTCAT+CGG | + | chr4_3:60353583-60353602 | None:intergenic | 40.0% | |
| CTTGGATGAACTGGGATTAT+CGG | - | chr4_3:60353609-60353628 | Msa0652640:intron | 40.0% | |
| TTGGATGAACTGGGATTATC+GGG | - | chr4_3:60353610-60353629 | Msa0652640:intron | 40.0% | |
| TACCCCATTTGTCTGTACAT+TGG | - | chr4_3:60353767-60353786 | Msa0652640:CDS | 40.0% | |
| TGCCAATGTACAGACAAATG+GGG | + | chr4_3:60353772-60353791 | None:intergenic | 40.0% | |
| AGTGAGCTTTCAGATTCTCA+AGG | + | chr4_3:60354093-60354112 | None:intergenic | 40.0% | |
| TTCTTCAAGGGATGTTAGGA+CGG | + | chr4_3:60354176-60354195 | None:intergenic | 40.0% | |
| ! | GGAAATTTGAAGCATCCTTG+AGG | + | chr4_3:60354210-60354229 | None:intergenic | 40.0% |
| AATTTCCAATCCGCTGTTGA+TGG | - | chr4_3:60354223-60354242 | Msa0652640:intron | 40.0% | |
| CATTGTATTGCTTAGGGCTT+AGG | + | chr4_3:60354438-60354457 | None:intergenic | 40.0% | |
| TGGGAGTTAGTTGTTCTAAC+CGG | + | chr4_3:60354467-60354486 | None:intergenic | 40.0% | |
| GAATTACTTAGGGCCCATTT+GGG | + | chr4_3:60354486-60354505 | None:intergenic | 40.0% | |
| TGAATTACTTAGGGCCCATT+TGG | + | chr4_3:60354487-60354506 | None:intergenic | 40.0% | |
| ! | GAGGCGTTTAAGAATGTTTC+TGG | - | chr4_3:60354608-60354627 | Msa0652640:intron | 40.0% |
| GATCTACTAGATCTTGCTAC+TGG | - | chr4_3:60354647-60354666 | Msa0652640:intron | 40.0% | |
| CTTAATCTTGTGAGATGTGG+TGG | - | chr4_3:60354710-60354729 | Msa0652640:intron | 40.0% | |
| AACATCAGCAATTCCATCCA+TGG | + | chr4_3:60354780-60354799 | None:intergenic | 40.0% | |
| AAGTGTTAAGGAGCAGAGTA+AGG | - | chr4_3:60354811-60354830 | Msa0652640:intron | 40.0% | |
| CACGGTGATGTTTGTAATCA+TGG | - | chr4_3:60354875-60354894 | Msa0652640:intron | 40.0% | |
| !! | CGACATGCATGGCTTTAGAT+TGG | + | chr4_3:60352137-60352156 | None:intergenic | 45.0% |
| GAAGCGGAAGAAGAAGATAG+AGG | + | chr4_3:60352245-60352264 | None:intergenic | 45.0% | |
| TGGAAACGCAGAAGAAGAAG+CGG | + | chr4_3:60352261-60352280 | None:intergenic | 45.0% | |
| TCACGCTCCTTGAATCTTTC+TGG | - | chr4_3:60352310-60352329 | Msa0652640:CDS | 45.0% | |
| !! | TTTGAGGTGGTTTTTGCACG+TGG | - | chr4_3:60352476-60352495 | Msa0652640:CDS | 45.0% |
| ! | TTGAGGTGGTTTTTGCACGT+GGG | - | chr4_3:60352477-60352496 | Msa0652640:CDS | 45.0% |
| TTGCAAATTTCTGTAGGGGG+TGG | - | chr4_3:60352668-60352687 | Msa0652640:intron | 45.0% | |
| TTCTGTAGGGGGTGGTTTAT+TGG | - | chr4_3:60352676-60352695 | Msa0652640:intron | 45.0% | |
| TTGTCCAATGCTTGCTTTGG+AGG | + | chr4_3:60352705-60352724 | None:intergenic | 45.0% | |
| !! | TCCAAAGCAAGCATTGGACA+AGG | - | chr4_3:60352704-60352723 | Msa0652640:intron | 45.0% |
| TCCTTGTCCAATGCTTGCTT+TGG | + | chr4_3:60352708-60352727 | None:intergenic | 45.0% | |
| TCCATATCTACGACACTGAC+TGG | - | chr4_3:60353179-60353198 | Msa0652640:intron | 45.0% | |
| TCCAGTCAGTGTCGTAGATA+TGG | + | chr4_3:60353183-60353202 | None:intergenic | 45.0% | |
| CGCTTACACCTCTGATAACA+TGG | - | chr4_3:60353226-60353245 | Msa0652640:intron | 45.0% | |
| !! | ATGAACCGATGAGTGTCGAA+AGG | - | chr4_3:60353575-60353594 | Msa0652640:intron | 45.0% |
| !! | GATGAGTGTCGAAAGGTTTC+TGG | - | chr4_3:60353582-60353601 | Msa0652640:intron | 45.0% |
| CGATAATCCCAGTTCATCCA+AGG | + | chr4_3:60353611-60353630 | None:intergenic | 45.0% | |
| GGGATTTGAATTGTCAGAGC+TGG | - | chr4_3:60353630-60353649 | Msa0652640:intron | 45.0% | |
| ! | ACCCAGCTTTATACGAGCAT+AGG | - | chr4_3:60353928-60353947 | Msa0652640:intron | 45.0% |
| GCCTATGCTCGTATAAAGCT+GGG | + | chr4_3:60353932-60353951 | None:intergenic | 45.0% | |
| GCTGCACGAGAAAATATCTG+AGG | - | chr4_3:60354124-60354143 | Msa0652640:intron | 45.0% | |
| TCTTCAAGGGATGTTAGGAC+GGG | + | chr4_3:60354175-60354194 | None:intergenic | 45.0% | |
| CGGTTTCTTCAAGGGATGTT+AGG | + | chr4_3:60354180-60354199 | None:intergenic | 45.0% | |
| CATAACCATCAACAGCGGAT+TGG | + | chr4_3:60354231-60354250 | None:intergenic | 45.0% | |
| GCATCTCTGATATAGGTTGC+TGG | - | chr4_3:60354569-60354588 | Msa0652640:intron | 45.0% | |
| !! | GAGTTGATGAGAGTGATGGT+TGG | - | chr4_3:60354839-60354858 | Msa0652640:intron | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | - | chr4_3:60354857-60354876 | Msa0652640:intron | 45.0% |
| GGACAATATTTACGGCCGAC+CGG | + | chr4_3:60352176-60352195 | None:intergenic | 50.0% | |
| GCAACCTCCAAAGCAAGCAT+TGG | - | chr4_3:60352698-60352717 | Msa0652640:intron | 50.0% | |
| !! | CGAAAAGGGTATCGAGCATG+CGG | - | chr4_3:60353070-60353089 | Msa0652640:intron | 50.0% |
| ! | TTAAGGGCATGCTTGAGGGA+TGG | - | chr4_3:60353303-60353322 | Msa0652640:intron | 50.0% |
| !! | GAGTGTCGAAAGGTTTCTGG+TGG | - | chr4_3:60353585-60353604 | Msa0652640:intron | 50.0% |
| TGAATTGTCAGAGCTGGAGC+AGG | - | chr4_3:60353636-60353655 | Msa0652640:intron | 50.0% | |
| GTTGTCCTTGATTCAAGGGC+TGG | - | chr4_3:60353735-60353754 | Msa0652640:CDS | 50.0% | |
| TCAAGCCAGCCCTTGAATCA+AGG | + | chr4_3:60353743-60353762 | None:intergenic | 50.0% | |
| GGCCTATGCTCGTATAAAGC+TGG | + | chr4_3:60353933-60353952 | None:intergenic | 50.0% | |
| !! | TTCTCAAGGCACTGCAACAC+AGG | + | chr4_3:60354079-60354098 | None:intergenic | 50.0% |
| AGGTTGTTCCAGGAAGACGT+GGG | - | chr4_3:60354144-60354163 | Msa0652640:intron | 50.0% | |
| ! | GCGAGGATCGGTTTCTTCAA+GGG | + | chr4_3:60354188-60354207 | None:intergenic | 50.0% |
| ! | TTTGAAGCATCCTTGAGGCG+AGG | + | chr4_3:60354205-60354224 | None:intergenic | 50.0% |
| ! | GATATAGGTTGCTGGTTGCG+AGG | - | chr4_3:60354577-60354596 | Msa0652640:intron | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | - | chr4_3:60354589-60354608 | Msa0652640:intron | 50.0% |
| !! | TGTTTCTGGTGTTGGAGTGC+TGG | - | chr4_3:60354622-60354641 | Msa0652640:intron | 50.0% |
| !! | TTGCTACTGGTTCGAGTACG+AGG | - | chr4_3:60354660-60354679 | Msa0652640:intron | 50.0% |
| GACGAGGGAAAATGCAGTGT+CGG | - | chr4_3:60354682-60354701 | Msa0652640:intron | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | - | chr4_3:60354718-60354737 | Msa0652640:intron | 50.0% |
| TGGAGATGTAAGAGACGCGT+TGG | - | chr4_3:60354745-60354764 | Msa0652640:intron | 50.0% | |
| !! | AAAGGGTATCGAGCATGCGG+TGG | - | chr4_3:60353073-60353092 | Msa0652640:intron | 55.0% |
| !! | AAGGGTATCGAGCATGCGGT+GGG | - | chr4_3:60353074-60353093 | Msa0652640:intron | 55.0% |
| ! | CAAACTGGTTCCTGGTTCGC+TGG | - | chr4_3:60353350-60353369 | Msa0652640:intron | 55.0% |
| !! | CGAAAGGTTTCTGGTGGCCT+TGG | - | chr4_3:60353591-60353610 | Msa0652640:intron | 55.0% |
| ! | TCTGGTGGCCTTGGATGAAC+TGG | - | chr4_3:60353600-60353619 | Msa0652640:intron | 55.0% |
| ! | CTGGTGGCCTTGGATGAACT+GGG | - | chr4_3:60353601-60353620 | Msa0652640:intron | 55.0% |
| GAGGTTGTTCCAGGAAGACG+TGG | - | chr4_3:60354143-60354162 | Msa0652640:intron | 55.0% | |
| ! | GGCGAGGATCGGTTTCTTCA+AGG | + | chr4_3:60354189-60354208 | None:intergenic | 55.0% |
| AGAAACCGATCCTCGCCTCA+AGG | - | chr4_3:60354192-60354211 | Msa0652640:intron | 55.0% | |
| AGCATCCTTGAGGCGAGGAT+CGG | + | chr4_3:60354200-60354219 | None:intergenic | 55.0% | |
| !! | TTCTGGTGTTGGAGTGCTGG+CGG | - | chr4_3:60354625-60354644 | Msa0652640:intron | 55.0% |
| TGGTTCGAGTACGAGGACGA+GGG | - | chr4_3:60354667-60354686 | Msa0652640:intron | 55.0% | |
| ! | GAGATGTGGTGGAGATGTGG+TGG | - | chr4_3:60354721-60354740 | Msa0652640:intron | 55.0% |
| ! | GTAAGAGACGCGTTGGCGTT+TGG | - | chr4_3:60354752-60354771 | Msa0652640:intron | 55.0% |
| !! | TTGGCGTTTGGTGCCATGGA+TGG | - | chr4_3:60354764-60354783 | Msa0652640:intron | 55.0% |
| ATCGAGCATGCGGTGGGAAC+AGG | - | chr4_3:60353080-60353099 | Msa0652640:intron | 60.0% | |
| AGCATGCGGTGGGAACAGGA+GGG | - | chr4_3:60353084-60353103 | Msa0652640:intron | 60.0% | |
| ! | ACTGGTTCCTGGTTCGCTGG+AGG | - | chr4_3:60353353-60353372 | Msa0652640:intron | 60.0% |
| CCTACTACCTCCAGCGAACC+AGG | + | chr4_3:60353363-60353382 | None:intergenic | 60.0% | |
| ! | CCTGGTTCGCTGGAGGTAGT+AGG | - | chr4_3:60353360-60353379 | Msa0652640:intron | 60.0% |
| GCACTGCAACACAGGCACCA+TGG | + | chr4_3:60354071-60354090 | None:intergenic | 60.0% | |
| CAAGGGATGTTAGGACGGGC+TGG | + | chr4_3:60354171-60354190 | None:intergenic | 60.0% | |
| ! | CTGGTTCGAGTACGAGGACG+AGG | - | chr4_3:60354666-60354685 | Msa0652640:intron | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | - | chr4_3:60354725-60354744 | Msa0652640:intron | 60.0% |
| GAGCATGCGGTGGGAACAGG+AGG | - | chr4_3:60353083-60353102 | Msa0652640:intron | 65.0% | |
| !! | CGCGTTGGCGTTTGGTGCCA+TGG | - | chr4_3:60354760-60354779 | Msa0652640:intron | 65.0% |
| !! | GGGCTGGTCCCACGTCTTCC+TGG | + | chr4_3:60354155-60354174 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60352118 | 60354967 | 60352118 | ID=Msa0652640;Name=Msa0652640 |
| chr4_3 | mRNA | 60352118 | 60354967 | 60352118 | ID=Msa0652640-mRNA-1;Parent=Msa0652640;Name=Msa0652640-mRNA-1;_AED=0.30;_eAED=0.48;_QI=0|0.4|0.33|0.83|0.8|1|6|0|249 |
| chr4_3 | exon | 60354959 | 60354967 | 60354959 | ID=Msa0652640-mRNA-1:exon:16415;Parent=Msa0652640-mRNA-1 |
| chr4_3 | exon | 60354308 | 60354401 | 60354308 | ID=Msa0652640-mRNA-1:exon:16414;Parent=Msa0652640-mRNA-1 |
| chr4_3 | exon | 60353711 | 60353865 | 60353711 | ID=Msa0652640-mRNA-1:exon:16413;Parent=Msa0652640-mRNA-1 |
| chr4_3 | exon | 60353428 | 60353526 | 60353428 | ID=Msa0652640-mRNA-1:exon:16412;Parent=Msa0652640-mRNA-1 |
| chr4_3 | exon | 60353013 | 60353021 | 60353013 | ID=Msa0652640-mRNA-1:exon:16411;Parent=Msa0652640-mRNA-1 |
| chr4_3 | exon | 60352118 | 60352501 | 60352118 | ID=Msa0652640-mRNA-1:exon:16410;Parent=Msa0652640-mRNA-1 |
| chr4_3 | CDS | 60354959 | 60354967 | 60354959 | ID=Msa0652640-mRNA-1:cds;Parent=Msa0652640-mRNA-1 |
| chr4_3 | CDS | 60354308 | 60354401 | 60354308 | ID=Msa0652640-mRNA-1:cds;Parent=Msa0652640-mRNA-1 |
| chr4_3 | CDS | 60353711 | 60353865 | 60353711 | ID=Msa0652640-mRNA-1:cds;Parent=Msa0652640-mRNA-1 |
| chr4_3 | CDS | 60353428 | 60353526 | 60353428 | ID=Msa0652640-mRNA-1:cds;Parent=Msa0652640-mRNA-1 |
| chr4_3 | CDS | 60353013 | 60353021 | 60353013 | ID=Msa0652640-mRNA-1:cds;Parent=Msa0652640-mRNA-1 |
| chr4_3 | CDS | 60352118 | 60352501 | 60352118 | ID=Msa0652640-mRNA-1:cds;Parent=Msa0652640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
