AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0945290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945290 MtrunA17_Chr8g0353271 66.169 201 52 3 71 265 149 339 1.27e-73 228
Msa0945290 MtrunA17_Chr8g0386901 92.308 117 8 1 1 116 1 117 1.72e-68 223
Msa0945290 MtrunA17_Chr8g0390981 45.455 99 49 1 21 114 46 144 5.14e-19 86.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0945290 AT1G63640.1 58.163 98 38 2 21 116 45 141 2.27e-29 117
Msa0945290 AT1G63640.4 58.163 98 38 2 21 116 45 141 2.27e-29 117
Msa0945290 AT1G63640.3 58.163 98 38 2 21 116 45 141 2.29e-29 117
Msa0945290 AT1G63640.2 58.163 98 38 2 21 116 45 141 2.33e-29 117
Msa0945290 AT1G63640.5 58.163 98 38 2 21 116 35 131 2.52e-29 117
Msa0945290 AT1G08315.1 48.182 110 48 2 134 234 202 311 1.03e-18 84.3
Msa0945290 AT5G41310.1 54.667 75 31 2 21 93 46 119 4.12e-18 84.3
Msa0945290 AT3G10310.2 33.333 120 61 3 22 122 26 145 5.81e-11 63.2
Msa0945290 AT3G10310.1 33.333 120 61 3 22 122 26 145 6.60e-11 62.8

Find 101 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACGCTCCTTGAATCTTTC+TGG 0.115285 6_3:+24034961 None:intergenic
ATCCGTATTATGTACCATTT+TGG 0.146642 6_3:+24035977 Msa0945290:CDS
TTTCTAAAGGTTGAGTCTTT+TGG 0.206810 6_3:+24035271 Msa0945290:five_prime_UTR
TCTGGTGGCCTTGGATGAAC+TGG 0.240207 6_3:+24036251 Msa0945290:CDS
ATTGAATCTGATTGTGGATT+TGG 0.250767 6_3:+24035221 Msa0945290:five_prime_UTR
GATGAGTGTCGAAAGGTTTC+TGG 0.253174 6_3:+24036233 Msa0945290:CDS
GAGGCGTTTAAGAATGTTTC+TGG 0.264257 6_3:+24037259 Msa0945290:CDS
TTCTTCCTCAGAAATTTCTA+AGG 0.279408 6_3:-24035931 None:intergenic
AAATTTCTGAGGAAGAATTA+AGG 0.283238 6_3:+24035937 Msa0945290:CDS
TCCTTGTCCAATGCTTGCTT+TGG 0.284828 6_3:-24035356 None:intergenic
GAATTGAATGGAGTGGTTCT+AGG 0.302523 6_3:+24035176 Msa0945290:five_prime_UTR
TCTAAGGGCATATTAAAGTT+AGG 0.338119 6_3:-24035915 None:intergenic
ATTGCTGATGTTAAAGATAA+AGG 0.343931 6_3:+24037439 Msa0945290:CDS
TTGTCCAATGCTTGCTTTGG+AGG 0.347732 6_3:-24035353 None:intergenic
GCATCTCTGATATAGGTTGC+TGG 0.350294 6_3:+24037220 Msa0945290:intron
TTGAATCTGATTGTGGATTT+GGG 0.351251 6_3:+24035222 Msa0945290:five_prime_UTR
AGGAACCAGTTTGTCCAAAA+TGG 0.352229 6_3:-24035991 None:intergenic
CTTGGATGAACTGGGATTAT+CGG 0.369631 6_3:+24036260 Msa0945290:CDS
ATCGAGCATGCGGTGGGAAC+AGG 0.373235 6_3:+24035731 Msa0945290:exon
CGAAAGGTTTCTGGTGGCCT+TGG 0.381864 6_3:+24036242 Msa0945290:CDS
GAGCCTTCTATTAGTCGTTA+TGG 0.396409 6_3:+24035395 Msa0945290:five_prime_UTR
AATTTCTGAGGAAGAATTAA+GGG 0.400000 6_3:+24035938 Msa0945290:CDS
TTTAAGAATGTTTCTGGTGT+TGG 0.404185 6_3:+24037265 Msa0945290:CDS
GTTGATGGTTATGTTGAATC+AGG 0.405976 6_3:+24036889 Msa0945290:CDS
AATTTCCAATCCGCTGTTGA+TGG 0.407173 6_3:+24036874 Msa0945290:CDS
CACGGTGATGTTTGTAATCA+TGG 0.407379 6_3:+24037526 Msa0945290:CDS
CGCGTTGGCGTTTGGTGCCA+TGG 0.410736 6_3:+24037411 Msa0945290:CDS
ACTAATGCTGCTATGAGTTC+AGG 0.422423 6_3:-24035434 None:intergenic
GTAAGAGACGCGTTGGCGTT+TGG 0.441043 6_3:+24037403 Msa0945290:CDS
ATAGTTAATCAAAAGCGAAA+AGG 0.451774 6_3:+24035706 Msa0945290:intron
TGTTTCTGGTGTTGGAGTGC+TGG 0.453944 6_3:+24037273 Msa0945290:CDS
TAAAGATAAAGGAAGTGTTA+AGG 0.455209 6_3:+24037450 Msa0945290:CDS
TTGGATGAACTGGGATTATC+GGG 0.455960 6_3:+24036261 Msa0945290:CDS
CTGGTGGCCTTGGATGAACT+GGG 0.456748 6_3:+24036252 Msa0945290:CDS
GTCCAAAATGGTACATAATA+CGG 0.457118 6_3:-24035979 None:intergenic
CACTGTTGCAAATTTCTGTA+GGG 0.460843 6_3:+24035314 Msa0945290:five_prime_UTR
TTACCATAACGACTAATAGA+AGG 0.467287 6_3:-24035398 None:intergenic
AATTGAATGGAGTGGTTCTA+GGG 0.474622 6_3:+24035177 Msa0945290:five_prime_UTR
CAAACTGGTTCCTGGTTCGC+TGG 0.475497 6_3:+24036001 Msa0945290:CDS
CGCTTACACCTCTGATAACA+TGG 0.478669 6_3:+24035877 Msa0945290:CDS
TTTGGGGAATTGAAATTGAA+AGG 0.479672 6_3:+24035289 Msa0945290:five_prime_UTR
TAGTTAATCAAAAGCGAAAA+GGG 0.491347 6_3:+24035707 Msa0945290:intron
TTGGCGTTTGGTGCCATGGA+TGG 0.501029 6_3:+24037415 Msa0945290:CDS
AAGTGTTAAGGAGCAGAGTA+AGG 0.501873 6_3:+24037462 Msa0945290:CDS
TTCTCAAGGCACTGCAACAC+AGG 0.501954 6_3:-24036727 None:intergenic
GGGATTTGAATTGTCAGAGC+TGG 0.502158 6_3:+24036281 Msa0945290:CDS
TGTTGAATTGAATCTGATTG+TGG 0.504739 6_3:+24035215 Msa0945290:five_prime_UTR
CCTACTACCTCCAGCGAACC+AGG 0.505351 6_3:-24036011 None:intergenic
TGTGGTGGAGATGTGGTGGC+TGG 0.510838 6_3:+24037376 Msa0945290:CDS
CTGGTTCGAGTACGAGGACG+AGG 0.519631 6_3:+24037317 Msa0945290:CDS
CATAACCATCAACAGCGGAT+TGG 0.521661 6_3:-24036879 None:intergenic
TCTTCCTCAGAAATTTCTAA+GGG 0.522851 6_3:-24035930 None:intergenic
AAGAATTAAGGGCATGCTTG+AGG 0.524021 6_3:+24035949 Msa0945290:CDS
AGAATTAAGGGCATGCTTGA+GGG 0.524459 6_3:+24035950 Msa0945290:CDS
ACACTGTTGCAAATTTCTGT+AGG 0.524597 6_3:+24035313 Msa0945290:five_prime_UTR
AGTCGTTATGGTAATGATGA+AGG 0.534093 6_3:+24035407 Msa0945290:five_prime_UTR
TGAATTGTCAGAGCTGGAGC+AGG 0.536848 6_3:+24036287 Msa0945290:CDS
AACATCAGCAATTCCATCCA+TGG 0.543264 6_3:-24037428 None:intergenic
GAGCATGCGGTGGGAACAGG+AGG 0.545943 6_3:+24035734 Msa0945290:exon
TACAATTGAATTGAATGGAG+TGG 0.548159 6_3:+24035169 Msa0945290:five_prime_UTR
AGTGTGAATCAAATTGAAGA+AGG 0.548871 6_3:+24035759 Msa0945290:CDS
GCAACCTCCAAAGCAAGCAT+TGG 0.553495 6_3:+24035349 Msa0945290:five_prime_UTR
AGCATCCTTGAGGCGAGGAT+CGG 0.555605 6_3:-24036848 None:intergenic
TGTGAGATGTGGTGGAGATG+TGG 0.560397 6_3:+24037369 Msa0945290:CDS
AGAAACCTTTCGACACTCAT+CGG 0.560922 6_3:-24036231 None:intergenic
CTTAATCTTGTGAGATGTGG+TGG 0.564928 6_3:+24037361 Msa0945290:CDS
TTGCTTAATCTTGTGAGATG+TGG 0.567457 6_3:+24037358 Msa0945290:CDS
GATCTACTAGATCTTGCTAC+TGG 0.569155 6_3:+24037298 Msa0945290:CDS
ATGTTATCAGAGGTGTAAGC+GGG 0.569812 6_3:-24035875 None:intergenic
GACGAGGGAAAATGCAGTGT+CGG 0.572198 6_3:+24037333 Msa0945290:CDS
TTGCTACTGGTTCGAGTACG+AGG 0.579153 6_3:+24037311 Msa0945290:CDS
CGATAATCCCAGTTCATCCA+AGG 0.585497 6_3:-24036259 None:intergenic
TGGAGATGTAAGAGACGCGT+TGG 0.588827 6_3:+24037396 Msa0945290:CDS
AAAGGGTATCGAGCATGCGG+TGG 0.592296 6_3:+24035724 Msa0945290:exon
GATATAGGTTGCTGGTTGCG+AGG 0.595916 6_3:+24037228 Msa0945290:intron
GAGTTGATGAGAGTGATGGT+TGG 0.595956 6_3:+24037490 Msa0945290:CDS
TTAAGGGCATGCTTGAGGGA+TGG 0.601904 6_3:+24035954 Msa0945290:CDS
GTTGGTGATGTTCGTAGTCA+CGG 0.603776 6_3:+24037508 Msa0945290:CDS
GAGATGTGGTGGAGATGTGG+TGG 0.610433 6_3:+24037372 Msa0945290:CDS
GGAAATTTGAAGCATCCTTG+AGG 0.616361 6_3:-24036858 None:intergenic
TTCTGGTGTTGGAGTGCTGG+CGG 0.616859 6_3:+24037276 Msa0945290:CDS
AGTGAGCTTTCAGATTCTCA+AGG 0.619076 6_3:-24036741 None:intergenic
AAGGGTATCGAGCATGCGGT+GGG 0.619265 6_3:+24035725 Msa0945290:exon
CTGTTGCAAATTTCTGTAGG+GGG 0.621139 6_3:+24035316 Msa0945290:five_prime_UTR
TATGCCCTTAGAAATTTCTG+AGG 0.621828 6_3:+24035926 Msa0945290:CDS
ACTGTTGCAAATTTCTGTAG+GGG 0.623715 6_3:+24035315 Msa0945290:five_prime_UTR
ACATTTATCCATGTTATCAG+AGG 0.625892 6_3:-24035885 None:intergenic
AGAAACCGATCCTCGCCTCA+AGG 0.628620 6_3:+24036843 Msa0945290:intron
TCCAAAGCAAGCATTGGACA+AGG 0.628826 6_3:+24035355 Msa0945290:five_prime_UTR
TTTGAAGCATCCTTGAGGCG+AGG 0.632275 6_3:-24036853 None:intergenic
GCACTGCAACACAGGCACCA+TGG 0.634732 6_3:-24036719 None:intergenic
GAGTGTCGAAAGGTTTCTGG+TGG 0.642393 6_3:+24036236 Msa0945290:CDS
ATGAACCGATGAGTGTCGAA+AGG 0.647445 6_3:+24036226 Msa0945290:CDS
CATGTTATCAGAGGTGTAAG+CGG 0.665124 6_3:-24035876 None:intergenic
ACTGGTTCCTGGTTCGCTGG+AGG 0.665782 6_3:+24036004 Msa0945290:CDS
TCTTTGATGAATGAAGATAG+TGG 0.667178 6_3:+24037583 Msa0945290:CDS
TGGTTGCGAGGAAAGTGTTG+AGG 0.674105 6_3:+24037240 Msa0945290:CDS
TGGTTCGAGTACGAGGACGA+GGG 0.676342 6_3:+24037318 Msa0945290:CDS
CGAAAAGGGTATCGAGCATG+CGG 0.681175 6_3:+24035721 Msa0945290:exon
AGCATGCGGTGGGAACAGGA+GGG 0.725350 6_3:+24035735 Msa0945290:exon
TTCAACATAACCATCAACAG+CGG 0.732160 6_3:-24036884 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAATAATAAAATAAATTGAA+TGG + chr6_3:24036616-24036635 Msa0945290:intron 10.0%
!! CTTAAATTTAAGTAAAAAAA+TGG + chr6_3:24036936-24036955 Msa0945290:intron 10.0%
!!! TAAGAAAAATTGTGTTTTTT+AGG + chr6_3:24035091-24035110 Msa0945290:five_prime_UTR 15.0%
!!! AAGAAAAATTGTGTTTTTTA+GGG + chr6_3:24035092-24035111 Msa0945290:five_prime_UTR 15.0%
!!! TACTAATTATAAAATTTTGC+AGG + chr6_3:24036693-24036712 Msa0945290:intron 15.0%
!!! ACTAATTATAAAATTTTGCA+GGG + chr6_3:24036694-24036713 Msa0945290:intron 15.0%
!!! TAGAATTTGCTTATATATTA+TGG - chr6_3:24036976-24036995 None:intergenic 15.0%
!!! TGATATCAGTTATTTTGTTT+CGG + chr6_3:24034988-24035007 Msa0945290:five_prime_UTR 20.0%
!!! TGTTTTACAATTGAATTGAA+TGG + chr6_3:24035164-24035183 Msa0945290:five_prime_UTR 20.0%
!!! AATAAGTTGAAAAAAGCTTA+TGG - chr6_3:24035573-24035592 None:intergenic 20.0%
!! ATCTTAATCAAATTATACAG+TGG - chr6_3:24036488-24036507 None:intergenic 20.0%
!! TTATTATTCAACATTATGCA+CGG - chr6_3:24036605-24036624 None:intergenic 20.0%
!! TATTAAGAATTTACTTCCTA+CGG + chr6_3:24036912-24036931 Msa0945290:intron 20.0%
!!! AGGGTTTTATTTTGATTTTG+AGG + chr6_3:24035111-24035130 Msa0945290:five_prime_UTR 25.0%
!!! GTTTTATTTTGATTTTGAGG+TGG + chr6_3:24035114-24035133 Msa0945290:five_prime_UTR 25.0%
!!! GTTTCTGGAATTTTTTCTAA+AGG + chr6_3:24035258-24035277 Msa0945290:five_prime_UTR 25.0%
!!! TCCTATTTAGATTAGCTTAT+TGG + chr6_3:24035478-24035497 Msa0945290:intron 25.0%
! TCCAATAAGCTAATCTAAAT+AGG - chr6_3:24035482-24035501 None:intergenic 25.0%
! ATAGTTAATCAAAAGCGAAA+AGG + chr6_3:24035706-24035725 Msa0945290:intron 25.0%
! TAGTTAATCAAAAGCGAAAA+GGG + chr6_3:24035707-24035726 Msa0945290:intron 25.0%
!! CTGGATTTTTATATGGTTTT+AGG + chr6_3:24035849-24035868 Msa0945290:intron 25.0%
!! AAATTTCTGAGGAAGAATTA+AGG + chr6_3:24035937-24035956 Msa0945290:CDS 25.0%
!! AATTTCTGAGGAAGAATTAA+GGG + chr6_3:24035938-24035957 Msa0945290:CDS 25.0%
! TAATGAATACATAACTGCTA+GGG - chr6_3:24036091-24036110 None:intergenic 25.0%
! TTAATGAATACATAACTGCT+AGG - chr6_3:24036092-24036111 None:intergenic 25.0%
! TCAGCTCAATTAATAAACAA+TGG - chr6_3:24036118-24036137 None:intergenic 25.0%
!!! AAGAATGCATTTTTAACTTC+AGG + chr6_3:24036188-24036207 Msa0945290:intron 25.0%
!!! AGAATGCATTTTTAACTTCA+GGG + chr6_3:24036189-24036208 Msa0945290:intron 25.0%
! TTCAAATTACATTGTGCATA+AGG - chr6_3:24036324-24036343 None:intergenic 25.0%
! TTACTTAAATTTAAGTCCGT+AGG - chr6_3:24036931-24036950 None:intergenic 25.0%
! AGTAAAAAAATGGTCATGTT+TGG + chr6_3:24036946-24036965 Msa0945290:intron 25.0%
! CAAAAATCAGTCAATTCAAA+TGG + chr6_3:24037061-24037080 Msa0945290:intron 25.0%
! CTATCTCATTGAATTACTTA+GGG - chr6_3:24037147-24037166 None:intergenic 25.0%
! TCTTATCTAATGTAACTGAT+AGG + chr6_3:24037185-24037204 Msa0945290:intron 25.0%
! ATTGCTGATGTTAAAGATAA+AGG + chr6_3:24037439-24037458 Msa0945290:CDS 25.0%
!!! TAAAGATAAAGGAAGTGTTA+AGG + chr6_3:24037450-24037469 Msa0945290:CDS 25.0%
!!! TCCTGGATTTTTTTAATCGA+TGG + chr6_3:24035026-24035045 Msa0945290:five_prime_UTR 30.0%
! ACCATCGATTAAAAAAATCC+AGG - chr6_3:24035030-24035049 None:intergenic 30.0%
TACAATTGAATTGAATGGAG+TGG + chr6_3:24035169-24035188 Msa0945290:five_prime_UTR 30.0%
TGTTGAATTGAATCTGATTG+TGG + chr6_3:24035215-24035234 Msa0945290:five_prime_UTR 30.0%
ATTGAATCTGATTGTGGATT+TGG + chr6_3:24035221-24035240 Msa0945290:five_prime_UTR 30.0%
TTGAATCTGATTGTGGATTT+GGG + chr6_3:24035222-24035241 Msa0945290:five_prime_UTR 30.0%
!!! TGGATTTGGGTTTTTTTTTG+TGG + chr6_3:24035235-24035254 Msa0945290:five_prime_UTR 30.0%
!!! GGATTTGGGTTTTTTTTTGT+GGG + chr6_3:24035236-24035255 Msa0945290:five_prime_UTR 30.0%
!! TTTCTAAAGGTTGAGTCTTT+TGG + chr6_3:24035271-24035290 Msa0945290:five_prime_UTR 30.0%
!! TTCTAAAGGTTGAGTCTTTT+GGG + chr6_3:24035272-24035291 Msa0945290:five_prime_UTR 30.0%
TTTGGGGAATTGAAATTGAA+AGG + chr6_3:24035289-24035308 Msa0945290:five_prime_UTR 30.0%
TTACCATAACGACTAATAGA+AGG - chr6_3:24035401-24035420 None:intergenic 30.0%
GCTTATTGGAGCTTATTTAT+TGG + chr6_3:24035492-24035511 Msa0945290:intron 30.0%
AGTGTGAATCAAATTGAAGA+AGG + chr6_3:24035759-24035778 Msa0945290:CDS 30.0%
!! ACACTGACTGGATTTTTATA+TGG + chr6_3:24035842-24035861 Msa0945290:intron 30.0%
ACATTTATCCATGTTATCAG+AGG - chr6_3:24035888-24035907 None:intergenic 30.0%
! TCTAAGGGCATATTAAAGTT+AGG - chr6_3:24035918-24035937 None:intergenic 30.0%
TCTTCCTCAGAAATTTCTAA+GGG - chr6_3:24035933-24035952 None:intergenic 30.0%
TTCTTCCTCAGAAATTTCTA+AGG - chr6_3:24035934-24035953 None:intergenic 30.0%
! ATCCGTATTATGTACCATTT+TGG + chr6_3:24035977-24035996 Msa0945290:CDS 30.0%
GTCCAAAATGGTACATAATA+CGG - chr6_3:24035982-24036001 None:intergenic 30.0%
AATGAATACATAACTGCTAG+GGG - chr6_3:24036090-24036109 None:intergenic 30.0%
! ATGCATTCTTTAGAAGAAAG+AGG - chr6_3:24036178-24036197 None:intergenic 30.0%
!! GTTACGACTTTTGCTATATT+TGG + chr6_3:24036357-24036376 Msa0945290:intron 30.0%
!! CTTTTGCTATATTTGGCAAT+TGG + chr6_3:24036364-24036383 Msa0945290:intron 30.0%
CTTCTTCATTGTATGACAAA+GGG - chr6_3:24036463-24036482 None:intergenic 30.0%
TCTTCTTCATTGTATGACAA+AGG - chr6_3:24036464-24036483 None:intergenic 30.0%
ACATAGTGCAGTAGAAAAAA+TGG - chr6_3:24036666-24036685 None:intergenic 30.0%
AAAAAAATGGTCATGTTTGG+TGG + chr6_3:24036949-24036968 Msa0945290:intron 30.0%
TAGCTTGACATGTTTATGAA+TGG + chr6_3:24036994-24037013 Msa0945290:intron 30.0%
CTATCTCATTGTATTGCTTA+GGG - chr6_3:24037095-24037114 None:intergenic 30.0%
GCTATCTCATTGAATTACTT+AGG - chr6_3:24037148-24037167 None:intergenic 30.0%
TAAGAGTTAGTTGTTCTAAC+TGG - chr6_3:24037170-24037189 None:intergenic 30.0%
! AACTTTTGCATCTCTGATAT+AGG + chr6_3:24037213-24037232 Msa0945290:intron 30.0%
!! TTTAAGAATGTTTCTGGTGT+TGG + chr6_3:24037265-24037284 Msa0945290:CDS 30.0%
TCTTTGATGAATGAAGATAG+TGG + chr6_3:24037583-24037602 Msa0945290:CDS 30.0%
!!! GGTTTTGTAGTTGTTTTTCC+TGG + chr6_3:24035009-24035028 Msa0945290:five_prime_UTR 35.0%
! AATTGAATGGAGTGGTTCTA+GGG + chr6_3:24035177-24035196 Msa0945290:five_prime_UTR 35.0%
!!! GGTTTTTTTTTGTGGGTTTC+TGG + chr6_3:24035243-24035262 Msa0945290:five_prime_UTR 35.0%
! TCTAAAGGTTGAGTCTTTTG+GGG + chr6_3:24035273-24035292 Msa0945290:five_prime_UTR 35.0%
ACACTGTTGCAAATTTCTGT+AGG + chr6_3:24035313-24035332 Msa0945290:five_prime_UTR 35.0%
CACTGTTGCAAATTTCTGTA+GGG + chr6_3:24035314-24035333 Msa0945290:five_prime_UTR 35.0%
ACTGTTGCAAATTTCTGTAG+GGG + chr6_3:24035315-24035334 Msa0945290:five_prime_UTR 35.0%
! AGTCGTTATGGTAATGATGA+AGG + chr6_3:24035407-24035426 Msa0945290:five_prime_UTR 35.0%
!! GTTGTTTTCAGAAGCTATCT+TGG - chr6_3:24035608-24035627 None:intergenic 35.0%
!! ACAACTTGCTTTTGTCTTTG+AGG + chr6_3:24035784-24035803 Msa0945290:intron 35.0%
TATGCCCTTAGAAATTTCTG+AGG + chr6_3:24035926-24035945 Msa0945290:CDS 35.0%
! ATGTACCATTTTGGACAAAC+TGG + chr6_3:24035986-24036005 Msa0945290:CDS 35.0%
!!! CATTTTTAACTTCAGGGAAG+TGG + chr6_3:24036195-24036214 Msa0945290:intron 35.0%
AATTGGTTGTCCTTGATTCA+AGG + chr6_3:24036381-24036400 Msa0945290:intron 35.0%
ATTGGTTGTCCTTGATTCAA+GGG + chr6_3:24036382-24036401 Msa0945290:intron 35.0%
TTGCCAATGTACAGACAAAT+GGG - chr6_3:24036424-24036443 None:intergenic 35.0%
ATTGCCAATGTACAGACAAA+TGG - chr6_3:24036425-24036444 None:intergenic 35.0%
ATTTGTCTGTACATTGGCAA+TGG + chr6_3:24036424-24036443 Msa0945290:intron 35.0%
AGCATGATATTTGCTTCAGT+TGG + chr6_3:24036529-24036548 Msa0945290:intron 35.0%
! CTTCAGTTGGATTTCTTTTG+TGG + chr6_3:24036542-24036561 Msa0945290:intron 35.0%
! TAAAATTTTGCAGGGATCCA+TGG + chr6_3:24036702-24036721 Msa0945290:intron 35.0%
! AAAATATCTGAGGTTGTTCC+AGG + chr6_3:24036785-24036804 Msa0945290:intron 35.0%
TTCAACATAACCATCAACAG+CGG - chr6_3:24036887-24036906 None:intergenic 35.0%
!! GTTGATGGTTATGTTGAATC+AGG + chr6_3:24036889-24036908 Msa0945290:CDS 35.0%
ATTGTATTGCTTAGGGCTTA+GGG - chr6_3:24037088-24037107 None:intergenic 35.0%
GCTATCTCATTGTATTGCTT+AGG - chr6_3:24037096-24037115 None:intergenic 35.0%
AAGCAATACAATGAGATAGC+CGG + chr6_3:24037096-24037115 Msa0945290:intron 35.0%
TAGAACAACTAACTCCCAAA+TGG + chr6_3:24037120-24037139 Msa0945290:intron 35.0%
AGAACAACTAACTCCCAAAT+GGG + chr6_3:24037121-24037140 Msa0945290:intron 35.0%
TTGCTTAATCTTGTGAGATG+TGG + chr6_3:24037358-24037377 Msa0945290:CDS 35.0%
!!! TTTTGAGTTGATGAGAGTGA+TGG + chr6_3:24037486-24037505 Msa0945290:CDS 35.0%
!!! GGTAATGTCGTTTTGAATAG+TGG + chr6_3:24037547-24037566 Msa0945290:CDS 35.0%
GAATTGAATGGAGTGGTTCT+AGG + chr6_3:24035176-24035195 Msa0945290:five_prime_UTR 40.0%
!!! TGGTTCTAGGGTTTTGAAAG+TGG + chr6_3:24035189-24035208 Msa0945290:five_prime_UTR 40.0%
CTGTTGCAAATTTCTGTAGG+GGG + chr6_3:24035316-24035335 Msa0945290:five_prime_UTR 40.0%
GAGCCTTCTATTAGTCGTTA+TGG + chr6_3:24035395-24035414 Msa0945290:five_prime_UTR 40.0%
ACTAATGCTGCTATGAGTTC+AGG - chr6_3:24035437-24035456 None:intergenic 40.0%
! ATGTTATCAGAGGTGTAAGC+GGG - chr6_3:24035878-24035897 None:intergenic 40.0%
! CATGTTATCAGAGGTGTAAG+CGG - chr6_3:24035879-24035898 None:intergenic 40.0%
! AAGAATTAAGGGCATGCTTG+AGG + chr6_3:24035949-24035968 Msa0945290:CDS 40.0%
! AGAATTAAGGGCATGCTTGA+GGG + chr6_3:24035950-24035969 Msa0945290:CDS 40.0%
AGGAACCAGTTTGTCCAAAA+TGG - chr6_3:24035994-24036013 None:intergenic 40.0%
!! ATTTTGGACAAACTGGTTCC+TGG + chr6_3:24035993-24036012 Msa0945290:CDS 40.0%
AGAAACCTTTCGACACTCAT+CGG - chr6_3:24036234-24036253 None:intergenic 40.0%
CTTGGATGAACTGGGATTAT+CGG + chr6_3:24036260-24036279 Msa0945290:CDS 40.0%
TTGGATGAACTGGGATTATC+GGG + chr6_3:24036261-24036280 Msa0945290:CDS 40.0%
TACCCCATTTGTCTGTACAT+TGG + chr6_3:24036418-24036437 Msa0945290:intron 40.0%
TGCCAATGTACAGACAAATG+GGG - chr6_3:24036423-24036442 None:intergenic 40.0%
AGTGAGCTTTCAGATTCTCA+AGG - chr6_3:24036744-24036763 None:intergenic 40.0%
TTCTTCAAGGGATGTTAGGA+CGG - chr6_3:24036827-24036846 None:intergenic 40.0%
! GGAAATTTGAAGCATCCTTG+AGG - chr6_3:24036861-24036880 None:intergenic 40.0%
AATTTCCAATCCGCTGTTGA+TGG + chr6_3:24036874-24036893 Msa0945290:CDS 40.0%
CATTGTATTGCTTAGGGCTT+AGG - chr6_3:24037089-24037108 None:intergenic 40.0%
TGGGAGTTAGTTGTTCTAAC+CGG - chr6_3:24037118-24037137 None:intergenic 40.0%
GAATTACTTAGGGCCCATTT+GGG - chr6_3:24037137-24037156 None:intergenic 40.0%
TGAATTACTTAGGGCCCATT+TGG - chr6_3:24037138-24037157 None:intergenic 40.0%
! GAGGCGTTTAAGAATGTTTC+TGG + chr6_3:24037259-24037278 Msa0945290:CDS 40.0%
GATCTACTAGATCTTGCTAC+TGG + chr6_3:24037298-24037317 Msa0945290:CDS 40.0%
CTTAATCTTGTGAGATGTGG+TGG + chr6_3:24037361-24037380 Msa0945290:CDS 40.0%
AACATCAGCAATTCCATCCA+TGG - chr6_3:24037431-24037450 None:intergenic 40.0%
AAGTGTTAAGGAGCAGAGTA+AGG + chr6_3:24037462-24037481 Msa0945290:CDS 40.0%
CACGGTGATGTTTGTAATCA+TGG + chr6_3:24037526-24037545 Msa0945290:CDS 40.0%
!! TTTGAGGTGGTTTTTGCACG+TGG + chr6_3:24035127-24035146 Msa0945290:five_prime_UTR 45.0%
! TTGAGGTGGTTTTTGCACGT+GGG + chr6_3:24035128-24035147 Msa0945290:five_prime_UTR 45.0%
TTGCAAATTTCTGTAGGGGG+TGG + chr6_3:24035319-24035338 Msa0945290:five_prime_UTR 45.0%
TTCTGTAGGGGGTGGTTTAT+TGG + chr6_3:24035327-24035346 Msa0945290:five_prime_UTR 45.0%
TTGTCCAATGCTTGCTTTGG+AGG - chr6_3:24035356-24035375 None:intergenic 45.0%
!! TCCAAAGCAAGCATTGGACA+AGG + chr6_3:24035355-24035374 Msa0945290:five_prime_UTR 45.0%
TCCTTGTCCAATGCTTGCTT+TGG - chr6_3:24035359-24035378 None:intergenic 45.0%
TCCATATCTACGACACTGAC+TGG + chr6_3:24035830-24035849 Msa0945290:intron 45.0%
TCCAGTCAGTGTCGTAGATA+TGG - chr6_3:24035834-24035853 None:intergenic 45.0%
CGCTTACACCTCTGATAACA+TGG + chr6_3:24035877-24035896 Msa0945290:CDS 45.0%
!! ATGAACCGATGAGTGTCGAA+AGG + chr6_3:24036226-24036245 Msa0945290:CDS 45.0%
!! GATGAGTGTCGAAAGGTTTC+TGG + chr6_3:24036233-24036252 Msa0945290:CDS 45.0%
CGATAATCCCAGTTCATCCA+AGG - chr6_3:24036262-24036281 None:intergenic 45.0%
GGGATTTGAATTGTCAGAGC+TGG + chr6_3:24036281-24036300 Msa0945290:CDS 45.0%
! ACCCAGCTTTATACGAGCAT+AGG + chr6_3:24036579-24036598 Msa0945290:intron 45.0%
GCCTATGCTCGTATAAAGCT+GGG - chr6_3:24036583-24036602 None:intergenic 45.0%
GCTGCACGAGAAAATATCTG+AGG + chr6_3:24036775-24036794 Msa0945290:intron 45.0%
TCTTCAAGGGATGTTAGGAC+GGG - chr6_3:24036826-24036845 None:intergenic 45.0%
CGGTTTCTTCAAGGGATGTT+AGG - chr6_3:24036831-24036850 None:intergenic 45.0%
CATAACCATCAACAGCGGAT+TGG - chr6_3:24036882-24036901 None:intergenic 45.0%
GCATCTCTGATATAGGTTGC+TGG + chr6_3:24037220-24037239 Msa0945290:intron 45.0%
!! GAGTTGATGAGAGTGATGGT+TGG + chr6_3:24037490-24037509 Msa0945290:CDS 45.0%
!! GTTGGTGATGTTCGTAGTCA+CGG + chr6_3:24037508-24037527 Msa0945290:CDS 45.0%
GCAACCTCCAAAGCAAGCAT+TGG + chr6_3:24035349-24035368 Msa0945290:five_prime_UTR 50.0%
!! CGAAAAGGGTATCGAGCATG+CGG + chr6_3:24035721-24035740 Msa0945290:exon 50.0%
! TTAAGGGCATGCTTGAGGGA+TGG + chr6_3:24035954-24035973 Msa0945290:CDS 50.0%
!! GAGTGTCGAAAGGTTTCTGG+TGG + chr6_3:24036236-24036255 Msa0945290:CDS 50.0%
TGAATTGTCAGAGCTGGAGC+AGG + chr6_3:24036287-24036306 Msa0945290:CDS 50.0%
GTTGTCCTTGATTCAAGGGC+TGG + chr6_3:24036386-24036405 Msa0945290:intron 50.0%
TCAAGCCAGCCCTTGAATCA+AGG - chr6_3:24036394-24036413 None:intergenic 50.0%
GGCCTATGCTCGTATAAAGC+TGG - chr6_3:24036584-24036603 None:intergenic 50.0%
!! TTCTCAAGGCACTGCAACAC+AGG - chr6_3:24036730-24036749 None:intergenic 50.0%
AGGTTGTTCCAGGAAGACGT+GGG + chr6_3:24036795-24036814 Msa0945290:intron 50.0%
! GCGAGGATCGGTTTCTTCAA+GGG - chr6_3:24036839-24036858 None:intergenic 50.0%
! TTTGAAGCATCCTTGAGGCG+AGG - chr6_3:24036856-24036875 None:intergenic 50.0%
! GATATAGGTTGCTGGTTGCG+AGG + chr6_3:24037228-24037247 Msa0945290:intron 50.0%
!! TGGTTGCGAGGAAAGTGTTG+AGG + chr6_3:24037240-24037259 Msa0945290:CDS 50.0%
!! TGTTTCTGGTGTTGGAGTGC+TGG + chr6_3:24037273-24037292 Msa0945290:CDS 50.0%
!! TTGCTACTGGTTCGAGTACG+AGG + chr6_3:24037311-24037330 Msa0945290:CDS 50.0%
GACGAGGGAAAATGCAGTGT+CGG + chr6_3:24037333-24037352 Msa0945290:CDS 50.0%
! TGTGAGATGTGGTGGAGATG+TGG + chr6_3:24037369-24037388 Msa0945290:CDS 50.0%
TGGAGATGTAAGAGACGCGT+TGG + chr6_3:24037396-24037415 Msa0945290:CDS 50.0%
!! AAAGGGTATCGAGCATGCGG+TGG + chr6_3:24035724-24035743 Msa0945290:exon 55.0%
!! AAGGGTATCGAGCATGCGGT+GGG + chr6_3:24035725-24035744 Msa0945290:exon 55.0%
! CAAACTGGTTCCTGGTTCGC+TGG + chr6_3:24036001-24036020 Msa0945290:CDS 55.0%
!! CGAAAGGTTTCTGGTGGCCT+TGG + chr6_3:24036242-24036261 Msa0945290:CDS 55.0%
! TCTGGTGGCCTTGGATGAAC+TGG + chr6_3:24036251-24036270 Msa0945290:CDS 55.0%
! CTGGTGGCCTTGGATGAACT+GGG + chr6_3:24036252-24036271 Msa0945290:CDS 55.0%
GAGGTTGTTCCAGGAAGACG+TGG + chr6_3:24036794-24036813 Msa0945290:intron 55.0%
! GGCGAGGATCGGTTTCTTCA+AGG - chr6_3:24036840-24036859 None:intergenic 55.0%
AGAAACCGATCCTCGCCTCA+AGG + chr6_3:24036843-24036862 Msa0945290:intron 55.0%
AGCATCCTTGAGGCGAGGAT+CGG - chr6_3:24036851-24036870 None:intergenic 55.0%
!! TTCTGGTGTTGGAGTGCTGG+CGG + chr6_3:24037276-24037295 Msa0945290:CDS 55.0%
TGGTTCGAGTACGAGGACGA+GGG + chr6_3:24037318-24037337 Msa0945290:CDS 55.0%
! GAGATGTGGTGGAGATGTGG+TGG + chr6_3:24037372-24037391 Msa0945290:CDS 55.0%
! GTAAGAGACGCGTTGGCGTT+TGG + chr6_3:24037403-24037422 Msa0945290:CDS 55.0%
!! TTGGCGTTTGGTGCCATGGA+TGG + chr6_3:24037415-24037434 Msa0945290:CDS 55.0%
ATCGAGCATGCGGTGGGAAC+AGG + chr6_3:24035731-24035750 Msa0945290:exon 60.0%
AGCATGCGGTGGGAACAGGA+GGG + chr6_3:24035735-24035754 Msa0945290:exon 60.0%
! ACTGGTTCCTGGTTCGCTGG+AGG + chr6_3:24036004-24036023 Msa0945290:CDS 60.0%
CCTACTACCTCCAGCGAACC+AGG - chr6_3:24036014-24036033 None:intergenic 60.0%
! CCTGGTTCGCTGGAGGTAGT+AGG + chr6_3:24036011-24036030 Msa0945290:intron 60.0%
GCACTGCAACACAGGCACCA+TGG - chr6_3:24036722-24036741 None:intergenic 60.0%
CAAGGGATGTTAGGACGGGC+TGG - chr6_3:24036822-24036841 None:intergenic 60.0%
! CTGGTTCGAGTACGAGGACG+AGG + chr6_3:24037317-24037336 Msa0945290:CDS 60.0%
! TGTGGTGGAGATGTGGTGGC+TGG + chr6_3:24037376-24037395 Msa0945290:CDS 60.0%
GAGCATGCGGTGGGAACAGG+AGG + chr6_3:24035734-24035753 Msa0945290:exon 65.0%
!! CGCGTTGGCGTTTGGTGCCA+TGG + chr6_3:24037411-24037430 Msa0945290:CDS 65.0%
!! GGGCTGGTCCCACGTCTTCC+TGG - chr6_3:24036806-24036825 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 24034973 24037618 24034973 ID=Msa0945290;Name=Msa0945290
chr6_3 mRNA 24034973 24037618 24034973 ID=Msa0945290-mRNA-1;Parent=Msa0945290;Name=Msa0945290-mRNA-1;_AED=0.12;_eAED=0.18;_QI=519|0.83|0.57|1|0.83|0.71|7|0|265
chr6_3 exon 24034973 24035463 24034973 ID=Msa0945290-mRNA-1:exon:6766;Parent=Msa0945290-mRNA-1
chr6_3 exon 24035710 24035780 24035710 ID=Msa0945290-mRNA-1:exon:6767;Parent=Msa0945290-mRNA-1
chr6_3 exon 24035871 24036025 24035871 ID=Msa0945290-mRNA-1:exon:6768;Parent=Msa0945290-mRNA-1
chr6_3 exon 24036210 24036308 24036210 ID=Msa0945290-mRNA-1:exon:6769;Parent=Msa0945290-mRNA-1
chr6_3 exon 24036715 24036765 24036715 ID=Msa0945290-mRNA-1:exon:6770;Parent=Msa0945290-mRNA-1
chr6_3 exon 24036845 24036910 24036845 ID=Msa0945290-mRNA-1:exon:6771;Parent=Msa0945290-mRNA-1
chr6_3 exon 24037235 24037618 24037235 ID=Msa0945290-mRNA-1:exon:6772;Parent=Msa0945290-mRNA-1
chr6_3 five_prime_UTR 24034973 24035463 24034973 ID=Msa0945290-mRNA-1:five_prime_utr;Parent=Msa0945290-mRNA-1
chr6_3 five_prime_UTR 24035710 24035737 24035710 ID=Msa0945290-mRNA-1:five_prime_utr;Parent=Msa0945290-mRNA-1
chr6_3 CDS 24035738 24035780 24035738 ID=Msa0945290-mRNA-1:cds;Parent=Msa0945290-mRNA-1
chr6_3 CDS 24035871 24036025 24035871 ID=Msa0945290-mRNA-1:cds;Parent=Msa0945290-mRNA-1
chr6_3 CDS 24036210 24036308 24036210 ID=Msa0945290-mRNA-1:cds;Parent=Msa0945290-mRNA-1
chr6_3 CDS 24036715 24036765 24036715 ID=Msa0945290-mRNA-1:cds;Parent=Msa0945290-mRNA-1
chr6_3 CDS 24036845 24036910 24036845 ID=Msa0945290-mRNA-1:cds;Parent=Msa0945290-mRNA-1
chr6_3 CDS 24037235 24037618 24037235 ID=Msa0945290-mRNA-1:cds;Parent=Msa0945290-mRNA-1
Gene Sequence

>Msa0945290

ATGCGGTGGGAACAGGAGGGAAGTGTGAATCAAATTGAAGAAGGTATCCCGCTTACACCTCTGATAACATGGATAAATGTTGTGCTTCCTAACTTTAATATGCCCTTAGAAATTTCTGAGGAAGAATTAAGGGCATGCTTGAGGGATGGATCCGTATTATGTACCATTTTGGACAAACTGGTTCCTGGTTCGCTGGAGGGAAGTGGTTCTTCGAATGAACCGATGAGTGTCGAAAGGTTTCTGGTGGCCTTGGATGAACTGGGATTATCGGGATTTGAATTGTCAGAGCTGGAGCAGGGATCCATGGTGCCTGTGTTGCAGTGCCTTGAGAATCTGAAAGCTCACTTTAAACCGATCCTCGCCTCAAGGATGCTTCAAATTTCCAATCCGCTGTTGATGGTTATGTTGAATCAGGTTGCTGGTTGCGAGGAAAGTGTTGAGGCGTTTAAGAATGTTTCTGGTGTTGGAGTGCTGGCGGATCTACTAGATCTTGCTACTGGTTCGAGTACGAGGACGAGGGAAAATGCAGTGTCGGCATTGCTTAATCTTGTGAGATGTGGTGGAGATGTGGTGGCTGGAGATGTAAGAGACGCGTTGGCGTTTGGTGCCATGGATGGAATTGCTGATGTTAAAGATAAAGGAAGTGTTAAGGAGCAGAGTAAGGCTTTTGAGTTGATGAGAGTGATGGTTGGTGATGTTCGTAGTCACGGTGATGTTTGTAATCATGGTAATGTCGTTTTGAATAGTGGTTCGTCGTTCTGTTCTTTGATGAATGAAGATAGTGGTACGTCGTTTTGA
Protein sequence

>Msa0945290

MRWEQEGSVNQIEEGIPLTPLITWINVVLPNFNMPLEISEEELRACLRDGSVLCTILDKLVPGSLEGSGSSNEPMSVERFLVALDELGLSGFELSELEQGSMVPVLQCLENLKAHFKPILASRMLQISNPLLMVMLNQVAGCEESVEAFKNVSGVGVLADLLDLATGSSTRTRENAVSALLNLVRCGGDVVAGDVRDALAFGAMDGIADVKDKGSVKEQSKAFELMRVMVGDVRSHGDVCNHGNVVLNSGSSFCSLMNEDSGTSF*