Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652950 | XP_013456979.1 | 98.387 | 620 | 10 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652950 | sp|Q9SGN6|NSL1_ARATH | 62.114 | 615 | 212 | 9 | 16 | 620 | 9 | 612 | 0.0 | 761 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652950 | A0A072UYS7 | 98.387 | 620 | 10 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0557600 | Msa0652950 | 0.853370 | 2.498999e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652950 | MtrunA17_Chr4g0046841 | 98.387 | 620 | 10 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1256 |
| Msa0652950 | MtrunA17_Chr2g0277061 | 52.658 | 602 | 261 | 9 | 21 | 614 | 11 | 596 | 0.0 | 614 |
| Msa0652950 | MtrunA17_Chr8g0385121 | 51.078 | 603 | 274 | 9 | 20 | 617 | 8 | 594 | 0.0 | 569 |
| Msa0652950 | MtrunA17_Chr8g0377631 | 41.491 | 617 | 320 | 11 | 25 | 611 | 11 | 616 | 6.56e-160 | 472 |
| Msa0652950 | MtrunA17_Chr3g0122211 | 40.492 | 610 | 335 | 9 | 23 | 611 | 15 | 617 | 3.09e-156 | 462 |
| Msa0652950 | MtrunA17_Chr8g0385131 | 42.786 | 603 | 293 | 10 | 21 | 616 | 12 | 569 | 2.91e-153 | 453 |
| Msa0652950 | MtrunA17_Chr8g0391931 | 42.379 | 597 | 323 | 10 | 22 | 611 | 6 | 588 | 3.31e-147 | 438 |
| Msa0652950 | MtrunA17_Chr8g0385181 | 40.735 | 599 | 292 | 15 | 21 | 613 | 12 | 553 | 2.77e-142 | 424 |
| Msa0652950 | MtrunA17_Chr4g0013011 | 38.512 | 605 | 326 | 11 | 21 | 611 | 10 | 582 | 3.30e-132 | 399 |
| Msa0652950 | MtrunA17_Chr2g0284691 | 38.602 | 601 | 297 | 12 | 25 | 611 | 22 | 564 | 9.83e-128 | 387 |
| Msa0652950 | MtrunA17_Chr7g0274871 | 89.441 | 161 | 13 | 1 | 2 | 162 | 107 | 263 | 4.92e-95 | 293 |
| Msa0652950 | MtrunA17_Chr8g0385171 | 40.566 | 318 | 148 | 9 | 21 | 335 | 12 | 291 | 1.47e-62 | 209 |
| Msa0652950 | MtrunA17_Chr8g0385161 | 40.071 | 282 | 136 | 5 | 339 | 619 | 1 | 250 | 1.01e-55 | 189 |
| Msa0652950 | MtrunA17_Chr7g0274901 | 87.059 | 85 | 10 | 1 | 382 | 465 | 1 | 85 | 2.94e-41 | 144 |
| Msa0652950 | MtrunA17_Chr7g0274911 | 81.159 | 69 | 10 | 1 | 527 | 592 | 12 | 80 | 4.73e-29 | 112 |
| Msa0652950 | MtrunA17_Chr7g0274881 | 92.593 | 54 | 4 | 0 | 190 | 243 | 1 | 54 | 9.11e-27 | 103 |
| Msa0652950 | MtrunA17_Chr8g0385141 | 49.074 | 108 | 53 | 2 | 127 | 233 | 12 | 118 | 5.16e-26 | 105 |
| Msa0652950 | MtrunA17_Chr7g0274891 | 56.716 | 67 | 25 | 1 | 303 | 365 | 4 | 70 | 9.68e-15 | 69.3 |
| Msa0652950 | MtrunA17_Chr8g0385151 | 54.348 | 46 | 21 | 0 | 291 | 336 | 3 | 48 | 9.22e-12 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0652950 | AT1G28380.1 | 62.114 | 615 | 212 | 9 | 16 | 620 | 9 | 612 | 0.0 | 761 |
| Msa0652950 | AT4G24290.2 | 51.480 | 608 | 269 | 9 | 21 | 619 | 10 | 600 | 0.0 | 605 |
| Msa0652950 | AT4G24290.3 | 51.480 | 608 | 269 | 9 | 21 | 619 | 10 | 600 | 0.0 | 605 |
| Msa0652950 | AT1G14780.1 | 38.636 | 616 | 344 | 13 | 23 | 611 | 10 | 618 | 8.37e-136 | 410 |
| Msa0652950 | AT1G29690.1 | 38.833 | 600 | 290 | 11 | 25 | 611 | 24 | 559 | 2.85e-133 | 402 |
| Msa0652950 | AT4G24290.1 | 48.961 | 337 | 153 | 6 | 21 | 348 | 10 | 336 | 1.18e-101 | 313 |
Find 161 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGACAAAATTAAGCATTT+TGG | 0.150769 | 4_3:+60737253 | None:intergenic |
| TGAGATCTTCTGAAATTTCT+AGG | 0.221118 | 4_3:+60737666 | None:intergenic |
| CACGGTATTAACATAAAGTT+TGG | 0.221178 | 4_3:+60738010 | None:intergenic |
| TCTATATACTATTCTTTATT+AGG | 0.229619 | 4_3:+60736926 | None:intergenic |
| GTCACTTCAGTTCACTCTTA+TGG | 0.231370 | 4_3:-60738036 | Msa0652950:CDS |
| ACTAAGAGCCTTGCCTTTGA+TGG | 0.266531 | 4_3:-60739460 | Msa0652950:CDS |
| CAGAGGATCCACCAGGATAT+TGG | 0.288457 | 4_3:-60737208 | Msa0652950:CDS |
| TTCAATAAGCAGGTTGATTC+GGG | 0.302971 | 4_3:-60737785 | Msa0652950:intron |
| CAGCATCTTTCAGAGGTTCC+AGG | 0.308912 | 4_3:-60737692 | Msa0652950:CDS |
| TTAATAGATAAGGGAACATT+AGG | 0.309328 | 4_3:+60740302 | None:intergenic |
| GGCTATATCAGGAAAATTAA+AGG | 0.311318 | 4_3:-60738807 | Msa0652950:intron |
| TGATGAAGTTCTTCTATTGC+AGG | 0.314788 | 4_3:+60738152 | None:intergenic |
| TTCAGGTTCATTGAAAAGTA+TGG | 0.316699 | 4_3:-60738995 | Msa0652950:intron |
| GTTGAGAGCCACTGGTTATA+AGG | 0.316965 | 4_3:+60738413 | None:intergenic |
| TATTCGACCATAAGTATAAA+AGG | 0.318647 | 4_3:-60738070 | Msa0652950:CDS |
| CTGAATTCTGTCCCAGGAAA+TGG | 0.330279 | 4_3:-60738335 | Msa0652950:CDS |
| TTGAACTACTATTGTCAATA+TGG | 0.331381 | 4_3:+60740363 | None:intergenic |
| AGATGTAGACTCATCCATTC+TGG | 0.349924 | 4_3:+60737541 | None:intergenic |
| GTCCATCCTGCGGCTATATC+AGG | 0.349930 | 4_3:-60738818 | Msa0652950:CDS |
| TCACTTCAGTTCACTCTTAT+GGG | 0.350996 | 4_3:-60738035 | Msa0652950:CDS |
| GGCGTAAACCGACCTGAATA+TGG | 0.355136 | 4_3:-60736986 | Msa0652950:three_prime_UTR |
| ACAATGAATTTGCCATATTC+AGG | 0.359445 | 4_3:+60736974 | None:intergenic |
| TCAACTTTAGATTGTTTCTC+AGG | 0.363374 | 4_3:+60737326 | None:intergenic |
| TCGTAGTAGCCTCGGCCATC+TGG | 0.365164 | 4_3:+60737623 | None:intergenic |
| CGGCCATCTGGTTCGTCAAT+AGG | 0.368985 | 4_3:+60737635 | None:intergenic |
| TTTCAATAAGCAGGTTGATT+CGG | 0.375628 | 4_3:-60737786 | Msa0652950:intron |
| TTGGTTTGAGGTTAAGCTAA+TGG | 0.376476 | 4_3:-60737504 | Msa0652950:CDS |
| TCGGGAAACCGGCCGGTAAC+AGG | 0.378523 | 4_3:-60737767 | Msa0652950:CDS |
| AGAGGATCCACCAGGATATT+GGG | 0.391881 | 4_3:-60737207 | Msa0652950:CDS |
| TGTCGAACATGCTATTGAAT+TGG | 0.395267 | 4_3:+60739515 | None:intergenic |
| TGGTTTGAGGTTAAGCTAAT+GGG | 0.397784 | 4_3:-60737503 | Msa0652950:CDS |
| GAATTCAGTAATGAAGTAAT+AGG | 0.399717 | 4_3:+60738350 | None:intergenic |
| TCAACCTCATCTAGAAAATC+AGG | 0.407263 | 4_3:-60737398 | Msa0652950:CDS |
| GGAGCCCTTGTTGGCACAGG+TGG | 0.415772 | 4_3:+60737275 | None:intergenic |
| GAAGACATTGATATGACATT+AGG | 0.418068 | 4_3:+60738377 | None:intergenic |
| TGTGACAAAGGCTTGGTTTG+AGG | 0.418183 | 4_3:-60737516 | Msa0652950:CDS |
| AGCAGGTTGATTCGGGAAAC+CGG | 0.418321 | 4_3:-60737778 | Msa0652950:intron |
| GATGCTGAAGATGGATTGAT+AGG | 0.420463 | 4_3:+60737708 | None:intergenic |
| TTTATCAGACTTAATAGATA+AGG | 0.420780 | 4_3:+60740292 | None:intergenic |
| ATGGTACACACGTAGTTGTT+GGG | 0.421463 | 4_3:-60738976 | Msa0652950:CDS |
| CTTAGTGGAAGCTGCATCCC+TGG | 0.425444 | 4_3:+60739477 | None:intergenic |
| GGATGATCATACAAAGCTTA+GGG | 0.425872 | 4_3:-60738680 | Msa0652950:CDS |
| CAATATCCTGGTGGATCCTC+TGG | 0.428546 | 4_3:+60737209 | None:intergenic |
| CGTAGTTGTTGGGGTGAAGA+TGG | 0.431793 | 4_3:-60738966 | Msa0652950:CDS |
| TTATCAGACTTAATAGATAA+GGG | 0.432799 | 4_3:+60740293 | None:intergenic |
| TTATCTATTAAGTCTGATAA+AGG | 0.435107 | 4_3:-60740290 | Msa0652950:CDS |
| GCTTTCTCAGCTGCTAATTG+AGG | 0.435446 | 4_3:+60740458 | None:intergenic |
| ACTAATAGCTACGGAAATGC+AGG | 0.436062 | 4_3:-60740488 | Msa0652950:CDS |
| CGACAATGGGCACCGATGTA+TGG | 0.437293 | 4_3:-60738107 | Msa0652950:CDS |
| TTGGGAGCCCTTGTTGGCAC+AGG | 0.446071 | 4_3:+60737272 | None:intergenic |
| AGGATGATCATACAAAGCTT+AGG | 0.446411 | 4_3:-60738681 | Msa0652950:CDS |
| AACAAACCTCCGTCCCTTGT+TGG | 0.451722 | 4_3:-60738646 | Msa0652950:CDS |
| AACAGACAACTATCATTGTC+GGG | 0.452760 | 4_3:-60739553 | Msa0652950:CDS |
| ACTTACTCGGCAAGAGCAGC+GGG | 0.456388 | 4_3:+60739346 | None:intergenic |
| CTGATAAAGGCGATTGTACC+AGG | 0.456640 | 4_3:-60740277 | Msa0652950:CDS |
| AACAGGTATTCGTTTATACT+TGG | 0.457606 | 4_3:-60737750 | Msa0652950:CDS |
| ATCAAAGGCAAGGCTCTTAG+TGG | 0.462014 | 4_3:+60739462 | None:intergenic |
| AACCTCCGTCCCTTGTTGGC+AGG | 0.463366 | 4_3:-60738642 | Msa0652950:CDS |
| CTGGAGCTATTGTATTGTAC+AGG | 0.472485 | 4_3:+60737560 | None:intergenic |
| GTTTCAGTTGCCACGACAAT+GGG | 0.473101 | 4_3:-60738120 | Msa0652950:CDS |
| ACGGTATTAACATAAAGTTT+GGG | 0.475299 | 4_3:+60738011 | None:intergenic |
| CATCTATTGTGACAAAGGCT+TGG | 0.480707 | 4_3:-60737523 | Msa0652950:CDS |
| TATGTAAGTTGAACTCTTCA+CGG | 0.481674 | 4_3:+60740560 | None:intergenic |
| TATAAACGAATACCTGTTAC+CGG | 0.485389 | 4_3:+60737755 | None:intergenic |
| GAGAAAGCTGTGAGTGTGAT+TGG | 0.485451 | 4_3:-60740443 | Msa0652950:CDS |
| CCTCTGAAAGATGCTGAAGA+TGG | 0.486026 | 4_3:+60737699 | None:intergenic |
| CGAAAATTCGCAGATCAGAA+TGG | 0.487617 | 4_3:-60737430 | Msa0652950:CDS |
| CCAGGATATTGGGTTGTCAC+TGG | 0.487824 | 4_3:-60737197 | Msa0652950:CDS |
| CTTTCTTATCATTCTATGTG+TGG | 0.488535 | 4_3:-60740589 | Msa0652950:five_prime_UTR |
| TATGGTACACACGTAGTTGT+TGG | 0.495177 | 4_3:-60738977 | Msa0652950:CDS |
| TAATGTCATATCAATGTCTT+CGG | 0.496730 | 4_3:-60738375 | Msa0652950:CDS |
| CAACAGACAACTATCATTGT+CGG | 0.500149 | 4_3:-60739554 | Msa0652950:CDS |
| AGAGCCTTGCCTTTGATGGA+TGG | 0.511034 | 4_3:-60739456 | Msa0652950:CDS |
| GGTATTCGTTTATACTTGGA+AGG | 0.511213 | 4_3:-60737746 | Msa0652950:CDS |
| AGCAATTTCTGCAGTTCAGT+CGG | 0.511584 | 4_3:+60738893 | None:intergenic |
| ATGTAAGTTGAACTCTTCAC+GGG | 0.514173 | 4_3:+60740561 | None:intergenic |
| GAAAATTCGCAGATCAGAAT+GGG | 0.514979 | 4_3:-60737429 | Msa0652950:CDS |
| TAGTAAGCATTTCTGTTCGA+AGG | 0.519900 | 4_3:-60738457 | Msa0652950:CDS |
| AGGTCATAACACTTCTATGA+TGG | 0.520173 | 4_3:+60740686 | None:intergenic |
| TTACAATTGGCCTGCCAACA+AGG | 0.520191 | 4_3:+60738632 | None:intergenic |
| GGTGCAAAGTTATGTGTAGA+AGG | 0.521969 | 4_3:-60737176 | Msa0652950:CDS |
| AGAGCCACTGGTTATAAGGT+TGG | 0.524639 | 4_3:+60738417 | None:intergenic |
| GACATTAGGAGACTGTGATA+TGG | 0.529982 | 4_3:+60738391 | None:intergenic |
| TCTCAGGTGAATGCAATCCT+TGG | 0.530122 | 4_3:+60737342 | None:intergenic |
| AGTTTCAGTTGCCACGACAA+TGG | 0.531590 | 4_3:-60738121 | Msa0652950:CDS |
| GTTAATAATACTAATAGCTA+CGG | 0.533258 | 4_3:-60740497 | Msa0652950:CDS |
| GAAAACATGCTCCACTTCAC+TGG | 0.533461 | 4_3:+60737599 | None:intergenic |
| GTGGTCCACCTGTGCCAACA+AGG | 0.536601 | 4_3:-60737280 | Msa0652950:CDS |
| AGTAAGCATTTCTGTTCGAA+GGG | 0.537776 | 4_3:-60738456 | Msa0652950:CDS |
| GACACAAAGGAAATGGTAAG+AGG | 0.538834 | 4_3:-60737233 | Msa0652950:CDS |
| ATAAACTCGGCAATTTATCA+TGG | 0.539597 | 4_3:-60737302 | Msa0652950:CDS |
| GATTCTCTGCTTGCAAGTCA+AGG | 0.541130 | 4_3:-60740391 | Msa0652950:CDS |
| TAATAGATAAGGGAACATTA+GGG | 0.541232 | 4_3:+60740303 | None:intergenic |
| TAGCTACGGAAATGCAGGGT+TGG | 0.542149 | 4_3:-60740483 | Msa0652950:CDS |
| CCATCTTCAGCATCTTTCAG+AGG | 0.545066 | 4_3:-60737699 | Msa0652950:CDS |
| TTGTCGGGAAAGATTCCATC+CGG | 0.552924 | 4_3:-60739538 | Msa0652950:CDS |
| AGCATTTCTGTTCGAAGGGG+AGG | 0.555180 | 4_3:-60738452 | Msa0652950:CDS |
| GGAAGAAGGAATTACCTTCA+CGG | 0.561197 | 4_3:+60737992 | None:intergenic |
| ACAATACAATAGCTCCAGAA+TGG | 0.564872 | 4_3:-60737555 | Msa0652950:CDS |
| TCTGAAATTTCTAGGACACC+TGG | 0.574524 | 4_3:+60737674 | None:intergenic |
| GTAGTTGTTGGGGTGAAGAT+GGG | 0.574754 | 4_3:-60738965 | Msa0652950:CDS |
| ATGCTATTGAATTGGCCGGA+TGG | 0.576725 | 4_3:+60739523 | None:intergenic |
| CCAGTGACAACCCAATATCC+TGG | 0.577834 | 4_3:+60737197 | None:intergenic |
| GTGATATGGTTGAGAGCCAC+TGG | 0.578254 | 4_3:+60738405 | None:intergenic |
| TACAATTGGCCTGCCAACAA+GGG | 0.578423 | 4_3:+60738633 | None:intergenic |
| TACTTACTCGGCAAGAGCAG+CGG | 0.582249 | 4_3:+60739345 | None:intergenic |
| AATATAATATATGTTTGAAG+AGG | 0.582650 | 4_3:+60740666 | None:intergenic |
| AGGTGGCAGAATCTCAATCA+AGG | 0.582915 | 4_3:-60737156 | Msa0652950:CDS |
| AACGAATACCTGTTACCGGC+CGG | 0.583865 | 4_3:+60737759 | None:intergenic |
| TACTTATGGTCGAATACAAG+AGG | 0.584243 | 4_3:+60738077 | None:intergenic |
| TGTTATGAACCATCCATCAA+AGG | 0.584689 | 4_3:+60739447 | None:intergenic |
| GCAGCGGGGTTCCACGAACA+AGG | 0.585598 | 4_3:+60739361 | None:intergenic |
| TCATTACTGAATTCTGTCCC+AGG | 0.588026 | 4_3:-60738341 | Msa0652950:CDS |
| GAGGACATCGGATCGAAACC+TGG | 0.588872 | 4_3:+60740259 | None:intergenic |
| TTTCAAAGGGTCATATACGC+GGG | 0.593654 | 4_3:+60740716 | None:intergenic |
| TGAATTTGCCATATTCAGGT+CGG | 0.595126 | 4_3:+60736978 | None:intergenic |
| GGTTGATTCGGGAAACCGGC+CGG | 0.595912 | 4_3:-60737774 | Msa0652950:CDS |
| ATGAGTGCAAAGCTTAGCCA+AGG | 0.599460 | 4_3:-60737359 | Msa0652950:CDS |
| TGGTCCACCTGTGCCAACAA+GGG | 0.603608 | 4_3:-60737279 | Msa0652950:CDS |
| GCTACTACGAACCAGTGAAG+TGG | 0.605145 | 4_3:-60737610 | Msa0652950:CDS |
| GTCTACATCTATTGTGACAA+AGG | 0.606707 | 4_3:-60737528 | Msa0652950:CDS |
| TACATCGGTGCCCATTGTCG+TGG | 0.607453 | 4_3:+60738110 | None:intergenic |
| ATTGGCCTGCCAACAAGGGA+CGG | 0.613832 | 4_3:+60738637 | None:intergenic |
| CTTAAGACTTGGATACTCAA+CGG | 0.619317 | 4_3:-60737462 | Msa0652950:CDS |
| CAATGACCTGATTAAAAGTG+AGG | 0.619839 | 4_3:+60740240 | None:intergenic |
| TGAACCATCCATCAAAGGCA+AGG | 0.620613 | 4_3:+60739452 | None:intergenic |
| ATTCGCAGATCAGAATGGGA+TGG | 0.626214 | 4_3:-60737425 | Msa0652950:CDS |
| AATTTCTGCAGTTCAGTCGG+CGG | 0.627237 | 4_3:+60738896 | None:intergenic |
| AGAGGTCCAGAGGATCCACC+AGG | 0.627751 | 4_3:-60737215 | Msa0652950:CDS |
| CAAAGCTTAGGGGACTGCAC+AGG | 0.627915 | 4_3:-60738669 | Msa0652950:CDS |
| TCACTGGTTCGTAGTAGCCT+CGG | 0.627996 | 4_3:+60737615 | None:intergenic |
| CTAATAGCTACGGAAATGCA+GGG | 0.629013 | 4_3:-60740487 | Msa0652950:CDS |
| ACTTTATGTTAATACCGTGA+AGG | 0.630084 | 4_3:-60738006 | Msa0652950:intron |
| GGAAATGGTAAGAGGTCCAG+AGG | 0.631442 | 4_3:-60737225 | Msa0652950:CDS |
| GATCCTATTGACGAACCAGA+TGG | 0.633830 | 4_3:-60737638 | Msa0652950:CDS |
| ATTGACGAACCAGATGGCCG+AGG | 0.634066 | 4_3:-60737632 | Msa0652950:CDS |
| GTTGTTGGGGTGAAGATGGG+AGG | 0.635084 | 4_3:-60738962 | Msa0652950:CDS |
| ATAAGAGTGAACTGAAGTGA+CGG | 0.635680 | 4_3:+60738038 | None:intergenic |
| GAACATGCTATTGAATTGGC+CGG | 0.637602 | 4_3:+60739519 | None:intergenic |
| ATCTAAAGTTGACATAAACT+CGG | 0.638507 | 4_3:-60737315 | Msa0652950:CDS |
| TTCCTGATATAGCCGCAGGA+TGG | 0.640932 | 4_3:+60738816 | None:intergenic |
| TTAGGGACAACAACACCAGA+AGG | 0.641365 | 4_3:+60740320 | None:intergenic |
| TGGTACACACGTAGTTGTTG+GGG | 0.641806 | 4_3:-60738975 | Msa0652950:CDS |
| AACTCGGCAATTTATCATGG+TGG | 0.643726 | 4_3:-60737299 | Msa0652950:CDS |
| ACAATAGTAGTTCAAACACA+AGG | 0.647296 | 4_3:-60740355 | Msa0652950:CDS |
| TTAAGCAATTAGCCGACGAG+AGG | 0.648867 | 4_3:-60738871 | Msa0652950:CDS |
| ATCCGCAGAAAACCTCTCGT+CGG | 0.653656 | 4_3:+60738859 | None:intergenic |
| GCTGTGAGTGTGATTGGTCA+AGG | 0.654752 | 4_3:-60740437 | Msa0652950:CDS |
| GGCCTGCCAACAAGGGACGG+AGG | 0.659617 | 4_3:+60738640 | None:intergenic |
| GTAAGCATTTCTGTTCGAAG+GGG | 0.662446 | 4_3:-60738455 | Msa0652950:CDS |
| AAGTTCTAATGTCCATCCTG+CGG | 0.667092 | 4_3:-60738828 | Msa0652950:CDS |
| CTGATTAAAAGTGAGGACAT+CGG | 0.670013 | 4_3:+60740247 | None:intergenic |
| TATGCCAACCTTATAACCAG+TGG | 0.681047 | 4_3:-60738421 | Msa0652950:CDS |
| GATGATCATACAAAGCTTAG+GGG | 0.687701 | 4_3:-60738679 | Msa0652950:CDS |
| TAGTTGTCTGTTGAAATGCT+CGG | 0.693311 | 4_3:+60739564 | None:intergenic |
| GCTGAAGATGGATTGATAGG+TGG | 0.699756 | 4_3:+60737711 | None:intergenic |
| GTGACAACCCAATATCCTGG+TGG | 0.702984 | 4_3:+60737200 | None:intergenic |
| CAATAGTAGTTCAAACACAA+GGG | 0.705935 | 4_3:-60740354 | Msa0652950:CDS |
| AGAGGCAGATCACCATACAT+CGG | 0.713318 | 4_3:+60738095 | None:intergenic |
| GCAAAGTTATGTGTAGAAGG+TGG | 0.744121 | 4_3:-60737173 | Msa0652950:CDS |
| CTTACTCGGCAAGAGCAGCG+GGG | 0.766908 | 4_3:+60739347 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTATGATAATTATTTTT+GGG | + | chr4_3:60736963-60736982 | None:intergenic | 10.0% |
| !!! | TATCTTATGATAATTATTTT+TGG | + | chr4_3:60736964-60736983 | None:intergenic | 10.0% |
| !!! | TATTTTAAACTAAATAAACA+TGG | - | chr4_3:60738696-60738715 | Msa0652950:intron | 10.0% |
| !!! | TCTTATGATAATTATTTTTG+GGG | + | chr4_3:60736962-60736981 | None:intergenic | 15.0% |
| !! | AATATAATATATGTTTGAAG+AGG | + | chr4_3:60737054-60737073 | None:intergenic | 15.0% |
| !! | ATGAAACTATTGAATATAAT+TGG | + | chr4_3:60737584-60737603 | None:intergenic | 15.0% |
| !! | AAGAAATAAAGATTTAAGTA+AGG | + | chr4_3:60738629-60738648 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATACTATTAACT+TGG | + | chr4_3:60738687-60738706 | None:intergenic | 15.0% |
| !!! | TATTATAAGAATTTCTTTTC+AGG | - | chr4_3:60739234-60739253 | Msa0652950:intron | 15.0% |
| !! | AGAAGAAAAAAATAAGTATT+GGG | + | chr4_3:60739477-60739496 | None:intergenic | 15.0% |
| !!! | TAATAACTATTAAAGAGTAT+TGG | + | chr4_3:60739756-60739775 | None:intergenic | 15.0% |
| !! | TCTATATACTATTCTTTATT+AGG | + | chr4_3:60740794-60740813 | None:intergenic | 15.0% |
| !!! | CTTATGATAATTATTTTTGG+GGG | + | chr4_3:60736961-60736980 | None:intergenic | 20.0% |
| !! | GTTAATAATACTAATAGCTA+CGG | - | chr4_3:60737220-60737239 | Msa0652950:CDS | 20.0% |
| !! | TTATCAGACTTAATAGATAA+GGG | + | chr4_3:60737427-60737446 | None:intergenic | 20.0% |
| !! | TTTATCAGACTTAATAGATA+AGG | + | chr4_3:60737428-60737447 | None:intergenic | 20.0% |
| !! | TTATCTATTAAGTCTGATAA+AGG | - | chr4_3:60737427-60737446 | Msa0652950:CDS | 20.0% |
| !!! | ATTATATGATTTTCTAGTTG+CGG | - | chr4_3:60737759-60737778 | Msa0652950:CDS | 20.0% |
| !!! | TGAAATTTTTTGTTTGCATT+TGG | - | chr4_3:60737918-60737937 | Msa0652950:intron | 20.0% |
| !! | TAATTATCATTTATGGTAGA+TGG | - | chr4_3:60738024-60738043 | Msa0652950:CDS | 20.0% |
| !! | ACATATAAGTGATATGAAAA+GGG | - | chr4_3:60738058-60738077 | Msa0652950:CDS | 20.0% |
| !!! | ATATGAAAAGGGAAATTTTA+GGG | - | chr4_3:60738069-60738088 | Msa0652950:CDS | 20.0% |
| !! | TAAAACTATAAGCATTCATT+TGG | - | chr4_3:60738517-60738536 | Msa0652950:intron | 20.0% |
| !! | AGATCATGAAGATAAAAATA+TGG | - | chr4_3:60738958-60738977 | Msa0652950:CDS | 20.0% |
| !! | TGAAGATAAAAATATGGAAA+TGG | - | chr4_3:60738964-60738983 | Msa0652950:CDS | 20.0% |
| !! | CAGAAGAAAAAAATAAGTAT+TGG | + | chr4_3:60739478-60739497 | None:intergenic | 20.0% |
| !!! | CAATACTTATTTTTTTCTTC+TGG | - | chr4_3:60739476-60739495 | Msa0652950:CDS | 20.0% |
| !! | TTCTTTGTTGAAATATATGT+TGG | - | chr4_3:60739506-60739525 | Msa0652950:CDS | 20.0% |
| ! | TTGAACTACTATTGTCAATA+TGG | + | chr4_3:60737357-60737376 | None:intergenic | 25.0% |
| ! | TAATAGATAAGGGAACATTA+GGG | + | chr4_3:60737417-60737436 | None:intergenic | 25.0% |
| ! | TTAATAGATAAGGGAACATT+AGG | + | chr4_3:60737418-60737437 | None:intergenic | 25.0% |
| ! | CTATTGAATATAATTGGTCA+TGG | + | chr4_3:60737578-60737597 | None:intergenic | 25.0% |
| ! | TTCAATCAACTAGTTGAAAA+AGG | + | chr4_3:60737630-60737649 | None:intergenic | 25.0% |
| ! | TTACATATTTGTGCTTAACA+TGG | + | chr4_3:60737654-60737673 | None:intergenic | 25.0% |
| ! | ACTATTGATAAAACACAGTT+AGG | + | chr4_3:60737739-60737758 | None:intergenic | 25.0% |
| ! | TAGTGATCAGAATTCAATTA+TGG | + | chr4_3:60737889-60737908 | None:intergenic | 25.0% |
| ! | TGCAAACAAAAAATTTCAAG+TGG | + | chr4_3:60737916-60737935 | None:intergenic | 25.0% |
| ! | CAAAAGTCAAAAGGTTAAAA+AGG | + | chr4_3:60737963-60737982 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGTAAATCAACC+AGG | + | chr4_3:60738004-60738023 | None:intergenic | 25.0% |
| !!! | TATGGTAGATGGTTTTTTTT+TGG | - | chr4_3:60738035-60738054 | Msa0652950:CDS | 25.0% |
| ! | GACATATAAGTGATATGAAA+AGG | - | chr4_3:60738057-60738076 | Msa0652950:CDS | 25.0% |
| !! | GATATGAAAAGGGAAATTTT+AGG | - | chr4_3:60738068-60738087 | Msa0652950:CDS | 25.0% |
| !! | TATGAAAAGGGAAATTTTAG+GGG | - | chr4_3:60738070-60738089 | Msa0652950:CDS | 25.0% |
| !!! | TTTTTTCACAGTTTCAGAAA+GGG | + | chr4_3:60738330-60738349 | None:intergenic | 25.0% |
| ! | GCATAACAATAATACTTACT+CGG | + | chr4_3:60738387-60738406 | None:intergenic | 25.0% |
| !! | TTTTAGCAATTATAGAGCAA+GGG | + | chr4_3:60738502-60738521 | None:intergenic | 25.0% |
| !! | TTGAATGTTACTGCTATTTA+GGG | + | chr4_3:60738571-60738590 | None:intergenic | 25.0% |
| ! | ATATCTTTGATCATGTTTGT+AGG | - | chr4_3:60739016-60739035 | Msa0652950:intron | 25.0% |
| ! | AAAAATGCTAACATCATTCT+TGG | + | chr4_3:60739120-60739139 | None:intergenic | 25.0% |
| ! | TAATGTCATATCAATGTCTT+CGG | - | chr4_3:60739342-60739361 | Msa0652950:intron | 25.0% |
| ! | GAATTCAGTAATGAAGTAAT+AGG | + | chr4_3:60739370-60739389 | None:intergenic | 25.0% |
| !!! | AAATGGATTTTTAAGTCATG+CGG | - | chr4_3:60739399-60739418 | Msa0652950:CDS | 25.0% |
| !!! | AAAAAATAAGTATTGGGCAA+AGG | + | chr4_3:60739471-60739490 | None:intergenic | 25.0% |
| ! | TATTCGACCATAAGTATAAA+AGG | - | chr4_3:60739647-60739666 | Msa0652950:intron | 25.0% |
| ! | ACGGTATTAACATAAAGTTT+GGG | + | chr4_3:60739709-60739728 | None:intergenic | 25.0% |
| !!! | TATTAAAGAGTATTGGAACT+TGG | + | chr4_3:60739749-60739768 | None:intergenic | 25.0% |
| !! | ATCTAAAGTTGACATAAACT+CGG | - | chr4_3:60740402-60740421 | Msa0652950:CDS | 25.0% |
| !! | TCGACAAAATTAAGCATTTT+GGG | + | chr4_3:60740466-60740485 | None:intergenic | 25.0% |
| !! | GTATATTTTGTGATGTCATT+CGG | - | chr4_3:60740710-60740729 | Msa0652950:five_prime_UTR | 25.0% |
| !!! | ATGATAATTATTTTTGGGGG+TGG | + | chr4_3:60736958-60736977 | None:intergenic | 30.0% |
| CTTTCTTATCATTCTATGTG+TGG | - | chr4_3:60737128-60737147 | Msa0652950:CDS | 30.0% | |
| ! | TATGTAAGTTGAACTCTTCA+CGG | + | chr4_3:60737160-60737179 | None:intergenic | 30.0% |
| !! | ATAGCTGCAATATTTTTGTG+TGG | - | chr4_3:60737177-60737196 | Msa0652950:CDS | 30.0% |
| ACAATAGTAGTTCAAACACA+AGG | - | chr4_3:60737362-60737381 | Msa0652950:CDS | 30.0% | |
| CAATAGTAGTTCAAACACAA+GGG | - | chr4_3:60737363-60737382 | Msa0652950:CDS | 30.0% | |
| AAGAAATTGAAGCAGAAGTA+AGG | + | chr4_3:60737512-60737531 | None:intergenic | 30.0% | |
| ATAGAAAAGTTCTTGACTAG+TGG | - | chr4_3:60737673-60737692 | Msa0652950:CDS | 30.0% | |
| ! | AGTTGATATATTGAGCAAGT+TGG | - | chr4_3:60737706-60737725 | Msa0652950:CDS | 30.0% |
| ATCAGTCTTCAAAAGTCAAA+AGG | + | chr4_3:60737972-60737991 | None:intergenic | 30.0% | |
| TGTTCGACATGAAAAAATGT+TGG | - | chr4_3:60738216-60738235 | Msa0652950:intron | 30.0% | |
| !!! | CTTTTTTCACAGTTTCAGAA+AGG | + | chr4_3:60738331-60738350 | None:intergenic | 30.0% |
| TTTAGCAATTATAGAGCAAG+GGG | + | chr4_3:60738501-60738520 | None:intergenic | 30.0% | |
| !! | GTTTTAGCAATTATAGAGCA+AGG | + | chr4_3:60738503-60738522 | None:intergenic | 30.0% |
| ! | TGAATGTTACTGCTATTTAG+GGG | + | chr4_3:60738570-60738589 | None:intergenic | 30.0% |
| ! | GTTGAATGTTACTGCTATTT+AGG | + | chr4_3:60738572-60738591 | None:intergenic | 30.0% |
| AAATCCTCCTATATGTTGAT+TGG | - | chr4_3:60738660-60738679 | Msa0652950:CDS | 30.0% | |
| CTAAATAAACATGGTTCTTC+AGG | - | chr4_3:60738705-60738724 | Msa0652950:intron | 30.0% | |
| ! | TTCAGGTTCATTGAAAAGTA+TGG | - | chr4_3:60738722-60738741 | Msa0652950:intron | 30.0% |
| GGCTATATCAGGAAAATTAA+AGG | - | chr4_3:60738910-60738929 | Msa0652950:CDS | 30.0% | |
| ! | TTGGAGTGACTTTTTACAAT+TGG | + | chr4_3:60739101-60739120 | None:intergenic | 30.0% |
| ATAAGCAGAATAGATGCAAA+GGG | + | chr4_3:60739190-60739209 | None:intergenic | 30.0% | |
| TATAAGCAGAATAGATGCAA+AGG | + | chr4_3:60739191-60739210 | None:intergenic | 30.0% | |
| GAAGACATTGATATGACATT+AGG | + | chr4_3:60739343-60739362 | None:intergenic | 30.0% | |
| GACTTAAAAATCCATTTCCT+GGG | + | chr4_3:60739396-60739415 | None:intergenic | 30.0% | |
| TGACTTAAAAATCCATTTCC+TGG | + | chr4_3:60739397-60739416 | None:intergenic | 30.0% | |
| ! | ACGCATTCCTTTTATACTTA+TGG | + | chr4_3:60739657-60739676 | None:intergenic | 30.0% |
| CACGGTATTAACATAAAGTT+TGG | + | chr4_3:60739710-60739729 | None:intergenic | 30.0% | |
| ACTTTATGTTAATACCGTGA+AGG | - | chr4_3:60739711-60739730 | Msa0652950:intron | 30.0% | |
| ACTTGTATAGCAAGAATGTA+AGG | - | chr4_3:60739791-60739810 | Msa0652950:intron | 30.0% | |
| TCAACCTGCTTATTGAAAAA+GGG | + | chr4_3:60739929-60739948 | None:intergenic | 30.0% | |
| ATCAACCTGCTTATTGAAAA+AGG | + | chr4_3:60739930-60739949 | None:intergenic | 30.0% | |
| !! | TTTCAATAAGCAGGTTGATT+CGG | - | chr4_3:60739931-60739950 | Msa0652950:intron | 30.0% |
| TATAAACGAATACCTGTTAC+CGG | + | chr4_3:60739965-60739984 | None:intergenic | 30.0% | |
| AACAGGTATTCGTTTATACT+TGG | - | chr4_3:60739967-60739986 | Msa0652950:intron | 30.0% | |
| !! | TGAGATCTTCTGAAATTTCT+AGG | + | chr4_3:60740054-60740073 | None:intergenic | 30.0% |
| ! | ACAGTACTTTTCTTAAGACT+TGG | - | chr4_3:60740244-60740263 | Msa0652950:intron | 30.0% |
| ! | AAATCCTGATTTTCTAGATG+AGG | + | chr4_3:60740326-60740345 | None:intergenic | 30.0% |
| ! | TCAACTTTAGATTGTTTCTC+AGG | + | chr4_3:60740394-60740413 | None:intergenic | 30.0% |
| ATAAACTCGGCAATTTATCA+TGG | - | chr4_3:60740415-60740434 | Msa0652950:CDS | 30.0% | |
| ! | GTCGACAAAATTAAGCATTT+TGG | + | chr4_3:60740467-60740486 | None:intergenic | 30.0% |
| ACAATGAATTTGCCATATTC+AGG | + | chr4_3:60740746-60740765 | None:intergenic | 30.0% | |
| !!! | CATTGTGCTGATTTTGTTTT+TGG | - | chr4_3:60740760-60740779 | Msa0652950:five_prime_UTR | 30.0% |
| ! | TTTTCAAAGGGTCATATACG+CGG | + | chr4_3:60737005-60737024 | None:intergenic | 35.0% |
| ! | TGATGGAGAGTCTTTTCAAA+GGG | + | chr4_3:60737017-60737036 | None:intergenic | 35.0% |
| !! | ATGATGGAGAGTCTTTTCAA+AGG | + | chr4_3:60737018-60737037 | None:intergenic | 35.0% |
| AGGTCATAACACTTCTATGA+TGG | + | chr4_3:60737034-60737053 | None:intergenic | 35.0% | |
| ! | ATGTAAGTTGAACTCTTCAC+GGG | + | chr4_3:60737159-60737178 | None:intergenic | 35.0% |
| ! | TTTTTGTGTGGCTTGAGTAA+TGG | - | chr4_3:60737189-60737208 | Msa0652950:CDS | 35.0% |
| ! | TTTTGTGTGGCTTGAGTAAT+GGG | - | chr4_3:60737190-60737209 | Msa0652950:CDS | 35.0% |
| CTGATTAAAAGTGAGGACAT+CGG | + | chr4_3:60737473-60737492 | None:intergenic | 35.0% | |
| CAATGACCTGATTAAAAGTG+AGG | + | chr4_3:60737480-60737499 | None:intergenic | 35.0% | |
| TCATTAGATACGATTCATCG+TGG | - | chr4_3:60737823-60737842 | Msa0652950:intron | 35.0% | |
| AAGACTGATCATGTATTACC+TGG | - | chr4_3:60737983-60738002 | Msa0652950:intron | 35.0% | |
| TAGTTGTCTGTTGAAATGCT+CGG | + | chr4_3:60738156-60738175 | None:intergenic | 35.0% | |
| CAACAGACAACTATCATTGT+CGG | - | chr4_3:60738163-60738182 | Msa0652950:intron | 35.0% | |
| AACAGACAACTATCATTGTC+GGG | - | chr4_3:60738164-60738183 | Msa0652950:intron | 35.0% | |
| TGTCGAACATGCTATTGAAT+TGG | + | chr4_3:60738205-60738224 | None:intergenic | 35.0% | |
| ACATGAAAAAATGTTGGTCC+AGG | - | chr4_3:60738222-60738241 | Msa0652950:intron | 35.0% | |
| CATGAAAAAATGTTGGTCCA+GGG | - | chr4_3:60738223-60738242 | Msa0652950:intron | 35.0% | |
| TGTTATGAACCATCCATCAA+AGG | + | chr4_3:60738273-60738292 | None:intergenic | 35.0% | |
| GACGACTATTAACTAGAAGA+GGG | + | chr4_3:60738414-60738433 | None:intergenic | 35.0% | |
| TGACGACTATTAACTAGAAG+AGG | + | chr4_3:60738415-60738434 | None:intergenic | 35.0% | |
| ACTTGGTCCAATCAACATAT+AGG | + | chr4_3:60738670-60738689 | None:intergenic | 35.0% | |
| AGGATGATCATACAAAGCTT+AGG | - | chr4_3:60739036-60739055 | Msa0652950:intron | 35.0% | |
| GGATGATCATACAAAGCTTA+GGG | - | chr4_3:60739037-60739056 | Msa0652950:intron | 35.0% | |
| GATGATCATACAAAGCTTAG+GGG | - | chr4_3:60739038-60739057 | Msa0652950:intron | 35.0% | |
| ATAATAAGTTCGACTGTTCG+AGG | + | chr4_3:60739220-60739239 | None:intergenic | 35.0% | |
| TAGTAAGCATTTCTGTTCGA+AGG | - | chr4_3:60739260-60739279 | Msa0652950:intron | 35.0% | |
| AGTAAGCATTTCTGTTCGAA+GGG | - | chr4_3:60739261-60739280 | Msa0652950:intron | 35.0% | |
| TGATGAAGTTCTTCTATTGC+AGG | + | chr4_3:60739568-60739587 | None:intergenic | 35.0% | |
| TACTTATGGTCGAATACAAG+AGG | + | chr4_3:60739643-60739662 | None:intergenic | 35.0% | |
| ATAAGAGTGAACTGAAGTGA+CGG | + | chr4_3:60739682-60739701 | None:intergenic | 35.0% | |
| TCACTTCAGTTCACTCTTAT+GGG | - | chr4_3:60739682-60739701 | Msa0652950:intron | 35.0% | |
| GAAGAACACACGATTATTGT+AGG | - | chr4_3:60739872-60739891 | Msa0652950:intron | 35.0% | |
| TTGTAGGAATTAGTTAGCAC+TGG | - | chr4_3:60739888-60739907 | Msa0652950:intron | 35.0% | |
| !! | TTCAATAAGCAGGTTGATTC+GGG | - | chr4_3:60739932-60739951 | Msa0652950:intron | 35.0% |
| GGTATTCGTTTATACTTGGA+AGG | - | chr4_3:60739971-60739990 | Msa0652950:intron | 35.0% | |
| ACAATACAATAGCTCCAGAA+TGG | - | chr4_3:60740162-60740181 | Msa0652950:intron | 35.0% | |
| GTCTACATCTATTGTGACAA+AGG | - | chr4_3:60740189-60740208 | Msa0652950:intron | 35.0% | |
| ! | TTGGTTTGAGGTTAAGCTAA+TGG | - | chr4_3:60740213-60740232 | Msa0652950:intron | 35.0% |
| ! | TGGTTTGAGGTTAAGCTAAT+GGG | - | chr4_3:60740214-60740233 | Msa0652950:intron | 35.0% |
| CTTAAGACTTGGATACTCAA+CGG | - | chr4_3:60740255-60740274 | Msa0652950:CDS | 35.0% | |
| GAAAATTCGCAGATCAGAAT+GGG | - | chr4_3:60740288-60740307 | Msa0652950:CDS | 35.0% | |
| ! | GATTTTCTAGATGAGGTTGA+AGG | + | chr4_3:60740319-60740338 | None:intergenic | 35.0% |
| TCAACCTCATCTAGAAAATC+AGG | - | chr4_3:60740319-60740338 | Msa0652950:CDS | 35.0% | |
| ! | GCTTAATTTTGTCGACACAA+AGG | - | chr4_3:60740471-60740490 | Msa0652950:CDS | 35.0% |
| ! | TTTTGTCGACACAAAGGAAA+TGG | - | chr4_3:60740477-60740496 | Msa0652950:CDS | 35.0% |
| TGAATTTGCCATATTCAGGT+CGG | + | chr4_3:60740742-60740761 | None:intergenic | 35.0% | |
| TTTCAAAGGGTCATATACGC+GGG | + | chr4_3:60737004-60737023 | None:intergenic | 40.0% | |
| ACTAATAGCTACGGAAATGC+AGG | - | chr4_3:60737229-60737248 | Msa0652950:CDS | 40.0% | |
| CTAATAGCTACGGAAATGCA+GGG | - | chr4_3:60737230-60737249 | Msa0652950:CDS | 40.0% | |
| CAACACCAGAAGGAAAAACA+AGG | + | chr4_3:60737390-60737409 | None:intergenic | 40.0% | |
| !! | CGATGTCCTCACTTTTAATC+AGG | - | chr4_3:60737471-60737490 | Msa0652950:CDS | 40.0% |
| !! | AAGGGAAATTTTAGGGGTGA+TGG | - | chr4_3:60738076-60738095 | Msa0652950:CDS | 40.0% |
| !! | AGGGAAATTTTAGGGGTGAT+GGG | - | chr4_3:60738077-60738096 | Msa0652950:CDS | 40.0% |
| GAACATGCTATTGAATTGGC+CGG | + | chr4_3:60738201-60738220 | None:intergenic | 40.0% | |
| TGGTCCAATCAACATATAGG+AGG | + | chr4_3:60738667-60738686 | None:intergenic | 40.0% | |
| TATGGTACACACGTAGTTGT+TGG | - | chr4_3:60738740-60738759 | Msa0652950:intron | 40.0% | |
| ATGGTACACACGTAGTTGTT+GGG | - | chr4_3:60738741-60738760 | Msa0652950:intron | 40.0% | |
| AGCAATTTCTGCAGTTCAGT+CGG | + | chr4_3:60738827-60738846 | None:intergenic | 40.0% | |
| ! | AAGTTCTAATGTCCATCCTG+CGG | - | chr4_3:60738889-60738908 | Msa0652950:CDS | 40.0% |
| ! | AATTTTCCTGATATAGCCGC+AGG | + | chr4_3:60738908-60738927 | None:intergenic | 40.0% |
| GTAAGCATTTCTGTTCGAAG+GGG | - | chr4_3:60739262-60739281 | Msa0652950:intron | 40.0% | |
| TATGCCAACCTTATAACCAG+TGG | - | chr4_3:60739296-60739315 | Msa0652950:intron | 40.0% | |
| GACATTAGGAGACTGTGATA+TGG | + | chr4_3:60739329-60739348 | None:intergenic | 40.0% | |
| TCATTACTGAATTCTGTCCC+AGG | - | chr4_3:60739376-60739395 | Msa0652950:CDS | 40.0% | |
| GTCACTTCAGTTCACTCTTA+TGG | - | chr4_3:60739681-60739700 | Msa0652950:intron | 40.0% | |
| GGAAGAAGGAATTACCTTCA+CGG | + | chr4_3:60739728-60739747 | None:intergenic | 40.0% | |
| !! | GAGTATTGGAACTTGGAAGA+AGG | + | chr4_3:60739742-60739761 | None:intergenic | 40.0% |
| !!! | TCGACCCTTTTTCAATAAGC+AGG | - | chr4_3:60739922-60739941 | Msa0652950:intron | 40.0% |
| !! | GATGCTGAAGATGGATTGAT+AGG | + | chr4_3:60740012-60740031 | None:intergenic | 40.0% |
| !! | TCTGAAATTTCTAGGACACC+TGG | + | chr4_3:60740046-60740065 | None:intergenic | 40.0% |
| CTGGAGCTATTGTATTGTAC+AGG | + | chr4_3:60740160-60740179 | None:intergenic | 40.0% | |
| AGATGTAGACTCATCCATTC+TGG | + | chr4_3:60740179-60740198 | None:intergenic | 40.0% | |
| CATCTATTGTGACAAAGGCT+TGG | - | chr4_3:60740194-60740213 | Msa0652950:intron | 40.0% | |
| CGAAAATTCGCAGATCAGAA+TGG | - | chr4_3:60740287-60740306 | Msa0652950:CDS | 40.0% | |
| AACTCGGCAATTTATCATGG+TGG | - | chr4_3:60740418-60740437 | Msa0652950:CDS | 40.0% | |
| GACACAAAGGAAATGGTAAG+AGG | - | chr4_3:60740484-60740503 | Msa0652950:CDS | 40.0% | |
| GGTGCAAAGTTATGTGTAGA+AGG | - | chr4_3:60740541-60740560 | Msa0652950:five_prime_UTR | 40.0% | |
| GCAAAGTTATGTGTAGAAGG+TGG | - | chr4_3:60740544-60740563 | Msa0652950:five_prime_UTR | 40.0% | |
| GGGTGGAGAAGTAAAAAGGA+CGG | + | chr4_3:60736941-60736960 | None:intergenic | 45.0% | |
| TTGGGGGTGGAGAAGTAAAA+AGG | + | chr4_3:60736945-60736964 | None:intergenic | 45.0% | |
| GCTTTCTCAGCTGCTAATTG+AGG | + | chr4_3:60737262-60737281 | None:intergenic | 45.0% | |
| GAGAAAGCTGTGAGTGTGAT+TGG | - | chr4_3:60737274-60737293 | Msa0652950:CDS | 45.0% | |
| GATTCTCTGCTTGCAAGTCA+AGG | - | chr4_3:60737326-60737345 | Msa0652950:CDS | 45.0% | |
| !!! | AGGGACCTTGTTTTTCCTTC+TGG | - | chr4_3:60737382-60737401 | Msa0652950:CDS | 45.0% |
| TTAGGGACAACAACACCAGA+AGG | + | chr4_3:60737400-60737419 | None:intergenic | 45.0% | |
| CTGATAAAGGCGATTGTACC+AGG | - | chr4_3:60737440-60737459 | Msa0652950:CDS | 45.0% | |
| AGTTCTTGACTAGTGGCAGA+TGG | - | chr4_3:60737680-60737699 | Msa0652950:CDS | 45.0% | |
| TGTTAGATCCATCTAGTGCG+TGG | - | chr4_3:60737858-60737877 | Msa0652950:intron | 45.0% | |
| TGGTAATACCACGCACTAGA+TGG | + | chr4_3:60737869-60737888 | None:intergenic | 45.0% | |
| !!! | AATTTTAGGGGTGATGGGAG+TGG | - | chr4_3:60738082-60738101 | Msa0652950:CDS | 45.0% |
| TTGTCGGGAAAGATTCCATC+CGG | - | chr4_3:60738179-60738198 | Msa0652950:intron | 45.0% | |
| ATGCTATTGAATTGGCCGGA+TGG | + | chr4_3:60738197-60738216 | None:intergenic | 45.0% | |
| ATCAAAGGCAAGGCTCTTAG+TGG | + | chr4_3:60738258-60738277 | None:intergenic | 45.0% | |
| ACTAAGAGCCTTGCCTTTGA+TGG | - | chr4_3:60738257-60738276 | Msa0652950:intron | 45.0% | |
| TGAACCATCCATCAAAGGCA+AGG | + | chr4_3:60738268-60738287 | None:intergenic | 45.0% | |
| ! | AAAAAGACGTGCCTTGTTCG+TGG | - | chr4_3:60738345-60738364 | Msa0652950:CDS | 45.0% |
| TGGTACACACGTAGTTGTTG+GGG | - | chr4_3:60738742-60738761 | Msa0652950:intron | 45.0% | |
| GTAGTTGTTGGGGTGAAGAT+GGG | - | chr4_3:60738752-60738771 | Msa0652950:intron | 45.0% | |
| AATTTCTGCAGTTCAGTCGG+CGG | + | chr4_3:60738824-60738843 | None:intergenic | 45.0% | |
| TTAAGCAATTAGCCGACGAG+AGG | - | chr4_3:60738846-60738865 | Msa0652950:CDS | 45.0% | |
| ! | TACAATTGGCCTGCCAACAA+GGG | + | chr4_3:60739087-60739106 | None:intergenic | 45.0% |
| ! | TTACAATTGGCCTGCCAACA+AGG | + | chr4_3:60739088-60739107 | None:intergenic | 45.0% |
| ! | AGAATAGATGCAAAGGGCAC+AGG | + | chr4_3:60739184-60739203 | None:intergenic | 45.0% |
| AAGTTCGACTGTTCGAGGAT+AGG | + | chr4_3:60739215-60739234 | None:intergenic | 45.0% | |
| ! | AGAGCCACTGGTTATAAGGT+TGG | + | chr4_3:60739303-60739322 | None:intergenic | 45.0% |
| ! | GTTGAGAGCCACTGGTTATA+AGG | + | chr4_3:60739307-60739326 | None:intergenic | 45.0% |
| CTGAATTCTGTCCCAGGAAA+TGG | - | chr4_3:60739382-60739401 | Msa0652950:CDS | 45.0% | |
| CAAAGGAAAACCAAAGTCGC+AGG | + | chr4_3:60739454-60739473 | None:intergenic | 45.0% | |
| AGTTTCAGTTGCCACGACAA+TGG | - | chr4_3:60739596-60739615 | Msa0652950:intron | 45.0% | |
| GTTTCAGTTGCCACGACAAT+GGG | - | chr4_3:60739597-60739616 | Msa0652950:intron | 45.0% | |
| AGAGGCAGATCACCATACAT+CGG | + | chr4_3:60739625-60739644 | None:intergenic | 45.0% | |
| !! | GCTGAAGATGGATTGATAGG+TGG | + | chr4_3:60740009-60740028 | None:intergenic | 45.0% |
| ! | CCTCTGAAAGATGCTGAAGA+TGG | + | chr4_3:60740021-60740040 | None:intergenic | 45.0% |
| CCATCTTCAGCATCTTTCAG+AGG | - | chr4_3:60740018-60740037 | Msa0652950:intron | 45.0% | |
| GATCCTATTGACGAACCAGA+TGG | - | chr4_3:60740079-60740098 | Msa0652950:intron | 45.0% | |
| GAAAACATGCTCCACTTCAC+TGG | + | chr4_3:60740121-60740140 | None:intergenic | 45.0% | |
| ! | TGTGACAAAGGCTTGGTTTG+AGG | - | chr4_3:60740201-60740220 | Msa0652950:intron | 45.0% |
| ATTCGCAGATCAGAATGGGA+TGG | - | chr4_3:60740292-60740311 | Msa0652950:CDS | 45.0% | |
| ATGAGTGCAAAGCTTAGCCA+AGG | - | chr4_3:60740358-60740377 | Msa0652950:CDS | 45.0% | |
| TCTCAGGTGAATGCAATCCT+TGG | + | chr4_3:60740378-60740397 | None:intergenic | 45.0% | |
| AGAGGATCCACCAGGATATT+GGG | - | chr4_3:60740510-60740529 | Msa0652950:CDS | 45.0% | |
| AGGTGGCAGAATCTCAATCA+AGG | - | chr4_3:60740561-60740580 | Msa0652950:five_prime_UTR | 45.0% | |
| !! | TAAATGATAATTAAAAAAAA+AGG | + | chr4_3:60738017-60738036 | None:intergenic | 5.0% |
| !!! | TTTTTTTTAATTATCATTTA+TGG | - | chr4_3:60738017-60738036 | Msa0652950:CDS | 5.0% |
| TAGCTACGGAAATGCAGGGT+TGG | - | chr4_3:60737234-60737253 | Msa0652950:CDS | 50.0% | |
| ! | GCTGTGAGTGTGATTGGTCA+AGG | - | chr4_3:60737280-60737299 | Msa0652950:CDS | 50.0% |
| AGAGCCTTGCCTTTGATGGA+TGG | - | chr4_3:60738261-60738280 | Msa0652950:intron | 50.0% | |
| TACTTACTCGGCAAGAGCAG+CGG | + | chr4_3:60738375-60738394 | None:intergenic | 50.0% | |
| CGTAGTTGTTGGGGTGAAGA+TGG | - | chr4_3:60738751-60738770 | Msa0652950:intron | 50.0% | |
| ATCCGCAGAAAACCTCTCGT+CGG | + | chr4_3:60738861-60738880 | None:intergenic | 50.0% | |
| TTCCTGATATAGCCGCAGGA+TGG | + | chr4_3:60738904-60738923 | None:intergenic | 50.0% | |
| AACAAACCTCCGTCCCTTGT+TGG | - | chr4_3:60739071-60739090 | Msa0652950:intron | 50.0% | |
| AGCATTTCTGTTCGAAGGGG+AGG | - | chr4_3:60739265-60739284 | Msa0652950:intron | 50.0% | |
| GTGATATGGTTGAGAGCCAC+TGG | + | chr4_3:60739315-60739334 | None:intergenic | 50.0% | |
| TGAGTAGACACCTGCGACTT+TGG | - | chr4_3:60739441-60739460 | Msa0652950:CDS | 50.0% | |
| !! | AGCAGGTTGATTCGGGAAAC+CGG | - | chr4_3:60739939-60739958 | Msa0652950:intron | 50.0% |
| AACGAATACCTGTTACCGGC+CGG | + | chr4_3:60739961-60739980 | None:intergenic | 50.0% | |
| CAGCATCTTTCAGAGGTTCC+AGG | - | chr4_3:60740025-60740044 | Msa0652950:intron | 50.0% | |
| !! | TCACTGGTTCGTAGTAGCCT+CGG | + | chr4_3:60740105-60740124 | None:intergenic | 50.0% |
| GCTACTACGAACCAGTGAAG+TGG | - | chr4_3:60740107-60740126 | Msa0652950:intron | 50.0% | |
| !! | AGCATTTTGGGAGCCCTTGT+TGG | + | chr4_3:60740454-60740473 | None:intergenic | 50.0% |
| GGAAATGGTAAGAGGTCCAG+AGG | - | chr4_3:60740492-60740511 | Msa0652950:CDS | 50.0% | |
| ! | CAATATCCTGGTGGATCCTC+TGG | + | chr4_3:60740511-60740530 | None:intergenic | 50.0% |
| CAGAGGATCCACCAGGATAT+TGG | - | chr4_3:60740509-60740528 | Msa0652950:CDS | 50.0% | |
| GTGACAACCCAATATCCTGG+TGG | + | chr4_3:60740520-60740539 | None:intergenic | 50.0% | |
| CCAGTGACAACCCAATATCC+TGG | + | chr4_3:60740523-60740542 | None:intergenic | 50.0% | |
| ! | CCAGGATATTGGGTTGTCAC+TGG | - | chr4_3:60740520-60740539 | Msa0652950:exon | 50.0% |
| GGCGTAAACCGACCTGAATA+TGG | - | chr4_3:60740731-60740750 | Msa0652950:five_prime_UTR | 50.0% | |
| GAGGACATCGGATCGAAACC+TGG | + | chr4_3:60737461-60737480 | None:intergenic | 55.0% | |
| CTTAGTGGAAGCTGCATCCC+TGG | + | chr4_3:60738243-60738262 | None:intergenic | 55.0% | |
| ACTTACTCGGCAAGAGCAGC+GGG | + | chr4_3:60738374-60738393 | None:intergenic | 55.0% | |
| GTTGTTGGGGTGAAGATGGG+AGG | - | chr4_3:60738755-60738774 | Msa0652950:intron | 55.0% | |
| ! | AGCCGACGAGAGGTTTTCTG+CGG | - | chr4_3:60738856-60738875 | Msa0652950:CDS | 55.0% |
| GTCCATCCTGCGGCTATATC+AGG | - | chr4_3:60738899-60738918 | Msa0652950:CDS | 55.0% | |
| CAAAGCTTAGGGGACTGCAC+AGG | - | chr4_3:60739048-60739067 | Msa0652950:intron | 55.0% | |
| ! | ATTGGCCTGCCAACAAGGGA+CGG | + | chr4_3:60739083-60739102 | None:intergenic | 55.0% |
| ! | TACATCGGTGCCCATTGTCG+TGG | + | chr4_3:60739610-60739629 | None:intergenic | 55.0% |
| !! | CGACAATGGGCACCGATGTA+TGG | - | chr4_3:60739610-60739629 | Msa0652950:intron | 55.0% |
| ! | CGGCCATCTGGTTCGTCAAT+AGG | + | chr4_3:60740085-60740104 | None:intergenic | 55.0% |
| ATTGACGAACCAGATGGCCG+AGG | - | chr4_3:60740085-60740104 | Msa0652950:intron | 55.0% | |
| TGGTCCACCTGTGCCAACAA+GGG | - | chr4_3:60740438-60740457 | Msa0652950:CDS | 55.0% | |
| CTTACTCGGCAAGAGCAGCG+GGG | + | chr4_3:60738373-60738392 | None:intergenic | 60.0% | |
| AACCTCCGTCCCTTGTTGGC+AGG | - | chr4_3:60739075-60739094 | Msa0652950:intron | 60.0% | |
| !! | GGTTGATTCGGGAAACCGGC+CGG | - | chr4_3:60739943-60739962 | Msa0652950:intron | 60.0% |
| TCGTAGTAGCCTCGGCCATC+TGG | + | chr4_3:60740097-60740116 | None:intergenic | 60.0% | |
| GTGGTCCACCTGTGCCAACA+AGG | - | chr4_3:60740437-60740456 | Msa0652950:CDS | 60.0% | |
| TTGGGAGCCCTTGTTGGCAC+AGG | + | chr4_3:60740448-60740467 | None:intergenic | 60.0% | |
| AGAGGTCCAGAGGATCCACC+AGG | - | chr4_3:60740502-60740521 | Msa0652950:CDS | 60.0% | |
| GCAGCGGGGTTCCACGAACA+AGG | + | chr4_3:60738359-60738378 | None:intergenic | 65.0% | |
| TCGGGAAACCGGCCGGTAAC+AGG | - | chr4_3:60739950-60739969 | Msa0652950:intron | 65.0% | |
| GGAGCCCTTGTTGGCACAGG+TGG | + | chr4_3:60740445-60740464 | None:intergenic | 65.0% | |
| GGCCTGCCAACAAGGGACGG+AGG | + | chr4_3:60739080-60739099 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 60736910 | 60740829 | 60736910 | ID=Msa0652950;Name=Msa0652950 |
| chr4_3 | mRNA | 60736910 | 60740829 | 60736910 | ID=Msa0652950-mRNA-1;Parent=Msa0652950;Name=Msa0652950-mRNA-1;_AED=0.08;_eAED=0.08;_QI=298|1|1|1|1|1|7|199|620 |
| chr4_3 | exon | 60736910 | 60737795 | 60736910 | ID=Msa0652950-mRNA-1:exon:16528;Parent=Msa0652950-mRNA-1 |
| chr4_3 | exon | 60738007 | 60738179 | 60738007 | ID=Msa0652950-mRNA-1:exon:16527;Parent=Msa0652950-mRNA-1 |
| chr4_3 | exon | 60738300 | 60738483 | 60738300 | ID=Msa0652950-mRNA-1:exon:16526;Parent=Msa0652950-mRNA-1 |
| chr4_3 | exon | 60738612 | 60738701 | 60738612 | ID=Msa0652950-mRNA-1:exon:16525;Parent=Msa0652950-mRNA-1 |
| chr4_3 | exon | 60738808 | 60739012 | 60738808 | ID=Msa0652950-mRNA-1:exon:16524;Parent=Msa0652950-mRNA-1 |
| chr4_3 | exon | 60739352 | 60739590 | 60739352 | ID=Msa0652950-mRNA-1:exon:16523;Parent=Msa0652950-mRNA-1 |
| chr4_3 | exon | 60740247 | 60740829 | 60740247 | ID=Msa0652950-mRNA-1:exon:16522;Parent=Msa0652950-mRNA-1 |
| chr4_3 | five_prime_UTR | 60740532 | 60740829 | 60740532 | ID=Msa0652950-mRNA-1:five_prime_utr;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60740247 | 60740531 | 60740247 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60739352 | 60739590 | 60739352 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60738808 | 60739012 | 60738808 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60738612 | 60738701 | 60738612 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60738300 | 60738483 | 60738300 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60738007 | 60738179 | 60738007 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | CDS | 60737109 | 60737795 | 60737109 | ID=Msa0652950-mRNA-1:cds;Parent=Msa0652950-mRNA-1 |
| chr4_3 | three_prime_UTR | 60736910 | 60737108 | 60736910 | ID=Msa0652950-mRNA-1:three_prime_utr;Parent=Msa0652950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
