Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557600 | XP_013456979.1 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1264 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557600 | sp|Q9SGN6|NSL1_ARATH | 62.114 | 615 | 212 | 9 | 16 | 620 | 9 | 612 | 0.0 | 764 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557600 | A0A072UYS7 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1264 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0557600 | Msa0572560 | 0.810145 | 1.333017e-50 | -8.615850e-47 |
| Msa0557600 | Msa0652950 | 0.853370 | 2.498999e-61 | -8.615850e-47 |
| Msa0557600 | Msa0695340 | 0.812755 | 3.613497e-51 | -8.615850e-47 |
| Msa0557600 | Msa1363810 | 0.806752 | 7.060488e-50 | -8.615850e-47 |
| Msa0557600 | Msa1424580 | 0.808455 | 3.070571e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557600 | MtrunA17_Chr4g0046841 | 98.710 | 620 | 8 | 0 | 1 | 620 | 1 | 620 | 0.0 | 1264 |
| Msa0557600 | MtrunA17_Chr2g0277061 | 52.492 | 602 | 262 | 9 | 21 | 614 | 11 | 596 | 0.0 | 614 |
| Msa0557600 | MtrunA17_Chr8g0385121 | 51.078 | 603 | 274 | 9 | 20 | 617 | 8 | 594 | 0.0 | 571 |
| Msa0557600 | MtrunA17_Chr8g0377631 | 41.329 | 617 | 321 | 11 | 25 | 611 | 11 | 616 | 6.56e-160 | 472 |
| Msa0557600 | MtrunA17_Chr3g0122211 | 40.656 | 610 | 334 | 9 | 23 | 611 | 15 | 617 | 4.05e-157 | 465 |
| Msa0557600 | MtrunA17_Chr8g0385131 | 43.212 | 604 | 289 | 12 | 21 | 616 | 12 | 569 | 1.91e-153 | 454 |
| Msa0557600 | MtrunA17_Chr8g0391931 | 42.211 | 597 | 324 | 10 | 22 | 611 | 6 | 588 | 3.94e-148 | 441 |
| Msa0557600 | MtrunA17_Chr8g0385181 | 40.902 | 599 | 291 | 15 | 21 | 613 | 12 | 553 | 3.52e-143 | 427 |
| Msa0557600 | MtrunA17_Chr4g0013011 | 38.347 | 605 | 327 | 11 | 21 | 611 | 10 | 582 | 4.04e-132 | 399 |
| Msa0557600 | MtrunA17_Chr2g0284691 | 38.436 | 601 | 298 | 12 | 25 | 611 | 22 | 564 | 1.33e-127 | 387 |
| Msa0557600 | MtrunA17_Chr7g0274871 | 89.441 | 161 | 13 | 1 | 2 | 162 | 107 | 263 | 4.66e-95 | 293 |
| Msa0557600 | MtrunA17_Chr8g0385171 | 40.252 | 318 | 149 | 9 | 21 | 335 | 12 | 291 | 2.51e-62 | 208 |
| Msa0557600 | MtrunA17_Chr8g0385161 | 40.636 | 283 | 133 | 7 | 339 | 619 | 1 | 250 | 1.14e-55 | 189 |
| Msa0557600 | MtrunA17_Chr7g0274901 | 88.235 | 85 | 9 | 1 | 382 | 465 | 1 | 85 | 1.56e-42 | 147 |
| Msa0557600 | MtrunA17_Chr7g0274911 | 81.159 | 69 | 10 | 1 | 527 | 592 | 12 | 80 | 5.01e-29 | 112 |
| Msa0557600 | MtrunA17_Chr7g0274881 | 92.593 | 54 | 4 | 0 | 190 | 243 | 1 | 54 | 1.03e-26 | 103 |
| Msa0557600 | MtrunA17_Chr8g0385141 | 48.148 | 108 | 54 | 2 | 127 | 233 | 12 | 118 | 1.46e-25 | 103 |
| Msa0557600 | MtrunA17_Chr7g0274891 | 93.548 | 31 | 2 | 0 | 335 | 365 | 40 | 70 | 4.43e-14 | 67.4 |
| Msa0557600 | MtrunA17_Chr8g0385151 | 56.522 | 46 | 20 | 0 | 291 | 336 | 3 | 48 | 1.15e-12 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0557600 | AT1G28380.1 | 62.114 | 615 | 212 | 9 | 16 | 620 | 9 | 612 | 0.0 | 764 |
| Msa0557600 | AT4G24290.2 | 51.151 | 608 | 271 | 9 | 21 | 619 | 10 | 600 | 0.0 | 602 |
| Msa0557600 | AT4G24290.3 | 51.151 | 608 | 271 | 9 | 21 | 619 | 10 | 600 | 0.0 | 602 |
| Msa0557600 | AT1G14780.1 | 38.636 | 616 | 344 | 13 | 23 | 611 | 10 | 618 | 5.15e-137 | 414 |
| Msa0557600 | AT1G29690.1 | 38.833 | 600 | 290 | 11 | 25 | 611 | 24 | 559 | 2.50e-133 | 402 |
| Msa0557600 | AT4G24290.1 | 48.665 | 337 | 154 | 6 | 21 | 348 | 10 | 336 | 1.11e-101 | 313 |
Find 159 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCGACAAAATTAAGCATTT+TGG | 0.150769 | 4_1:+56047832 | None:intergenic |
| TGTGATCTTCTGAAATTTCT+AGG | 0.199569 | 4_1:+56048245 | None:intergenic |
| CACGGTATTAACATAAAGTT+TGG | 0.221178 | 4_1:+56048587 | None:intergenic |
| TCTATATACTATTCTTTATT+AGG | 0.229619 | 4_1:+56047499 | None:intergenic |
| GTCACTTCAGTTCACTCTTA+TGG | 0.231370 | 4_1:-56048613 | Msa0557600:CDS |
| ACTAAGAGCCTTGCCTTTGA+TGG | 0.266531 | 4_1:-56050037 | Msa0557600:CDS |
| CAGAGGATCCACCAGGATAT+TGG | 0.288457 | 4_1:-56047787 | Msa0557600:CDS |
| CAGCATCTTTCAGAGGTTCC+AGG | 0.308912 | 4_1:-56048271 | Msa0557600:CDS |
| TTAATAGATAAGGGAACATT+AGG | 0.309328 | 4_1:+56050848 | None:intergenic |
| GGCTATATCAGGAAAATTAA+AGG | 0.311318 | 4_1:-56049384 | Msa0557600:intron |
| TGATGAAGTTCTTCTATTGC+AGG | 0.314788 | 4_1:+56048729 | None:intergenic |
| TTCAGGTTCATTGAAAAGTA+TGG | 0.316699 | 4_1:-56049572 | Msa0557600:intron |
| GTTGAGAGCCACTGGTTATA+AGG | 0.316965 | 4_1:+56048990 | None:intergenic |
| TATTCGACCATAAGTATAAA+AGG | 0.318647 | 4_1:-56048647 | Msa0557600:CDS |
| TTCAATAAGCAGGTTGATTC+GGG | 0.318983 | 4_1:-56048364 | Msa0557600:intron |
| CTGAATTCTGTCCCAGGAAA+TGG | 0.330279 | 4_1:-56048912 | Msa0557600:CDS |
| TTGAACTACTATTGTCAATA+TGG | 0.331381 | 4_1:+56050909 | None:intergenic |
| AGATGTAGACTCATCCATTC+TGG | 0.349924 | 4_1:+56048120 | None:intergenic |
| GTCCATCCTGCGGCTATATC+AGG | 0.349930 | 4_1:-56049395 | Msa0557600:CDS |
| TCACTTCAGTTCACTCTTAT+GGG | 0.350996 | 4_1:-56048612 | Msa0557600:CDS |
| GGCGTAAACCGACCTGAATA+TGG | 0.355136 | 4_1:-56047566 | Msa0557600:three_prime_UTR |
| ACAATGAATTTGCCATATTC+AGG | 0.359445 | 4_1:+56047554 | None:intergenic |
| TCAACTTTAGATTGTTTCTC+AGG | 0.363374 | 4_1:+56047905 | None:intergenic |
| TCGTAGTAGCCTCGGCCATC+TGG | 0.365164 | 4_1:+56048202 | None:intergenic |
| CGGCCATCTGGTTCGTCAAT+AGG | 0.368985 | 4_1:+56048214 | None:intergenic |
| TTTCAATAAGCAGGTTGATT+CGG | 0.375628 | 4_1:-56048365 | Msa0557600:intron |
| TTGGTTTGAGGTTAAGCTAA+TGG | 0.376476 | 4_1:-56048083 | Msa0557600:CDS |
| TCGGGAAACCGGCCGGTAAC+AGG | 0.378523 | 4_1:-56048346 | Msa0557600:CDS |
| AGAGGATCCACCAGGATATT+GGG | 0.391881 | 4_1:-56047786 | Msa0557600:CDS |
| TGTCGAACATGCTATTGAAT+TGG | 0.395267 | 4_1:+56050092 | None:intergenic |
| TAATGTCATATCAATGTCTT+TGG | 0.396557 | 4_1:-56048952 | Msa0557600:CDS |
| TGGTTTGAGGTTAAGCTAAT+GGG | 0.397784 | 4_1:-56048082 | Msa0557600:CDS |
| GAATTCAGTAATGAAGTAAT+AGG | 0.399717 | 4_1:+56048927 | None:intergenic |
| TCAACCTCATCTAGAAAATC+AGG | 0.407263 | 4_1:-56047977 | Msa0557600:CDS |
| GGAGCCCTTGTTGGCACAGG+TGG | 0.415772 | 4_1:+56047854 | None:intergenic |
| TGTGACAAAGGCTTGGTTTG+AGG | 0.418183 | 4_1:-56048095 | Msa0557600:CDS |
| AGCAGGTTGATTCGGGAAAC+CGG | 0.418321 | 4_1:-56048357 | Msa0557600:intron |
| AAAGACATTGATATGACATT+AGG | 0.419683 | 4_1:+56048954 | None:intergenic |
| GATGCTGAAGATGGATTGAT+AGG | 0.420463 | 4_1:+56048287 | None:intergenic |
| AACAGACAACTATCTTTGTC+GGG | 0.421260 | 4_1:-56050130 | Msa0557600:CDS |
| ATGGTACACACGTAGTTGTT+GGG | 0.421463 | 4_1:-56049553 | Msa0557600:CDS |
| CTTAGTGGAAGCTGCATCCC+TGG | 0.425444 | 4_1:+56050054 | None:intergenic |
| GGATGATCATACAAAGCTTA+GGG | 0.425872 | 4_1:-56049257 | Msa0557600:CDS |
| CAATATCCTGGTGGATCCTC+TGG | 0.428546 | 4_1:+56047788 | None:intergenic |
| CGTAGTTGTTGGGGTGAAGA+TGG | 0.431793 | 4_1:-56049543 | Msa0557600:CDS |
| TTATCAGACTTAATAGATAA+GGG | 0.435251 | 4_1:+56050839 | None:intergenic |
| GCTTTCTCAGCTGCTAATTG+AGG | 0.435446 | 4_1:+56051004 | None:intergenic |
| ACTAATAGCTATGGAAATGC+AGG | 0.435774 | 4_1:-56051034 | Msa0557600:CDS |
| ACTTACTCGGCAAGAGCAGC+AGG | 0.435956 | 4_1:+56049923 | None:intergenic |
| CGACAATGGGCACCGATGTA+TGG | 0.437293 | 4_1:-56048684 | Msa0557600:CDS |
| TTTATCAGACTTAATAGATA+AGG | 0.439387 | 4_1:+56050838 | None:intergenic |
| TTATCTATTAAGTCTGATAA+AGG | 0.439839 | 4_1:-56050836 | Msa0557600:CDS |
| TTGGGAGCCCTTGTTGGCAC+AGG | 0.446071 | 4_1:+56047851 | None:intergenic |
| AGGATGATCATACAAAGCTT+AGG | 0.446411 | 4_1:-56049258 | Msa0557600:CDS |
| AACAAACCTCCGTCCCTTGT+TGG | 0.451722 | 4_1:-56049223 | Msa0557600:CDS |
| CAACAGACAACTATCTTTGT+CGG | 0.454285 | 4_1:-56050131 | Msa0557600:CDS |
| AACAGGTATTCGTTTATACT+TGG | 0.457606 | 4_1:-56048329 | Msa0557600:CDS |
| ATCAAAGGCAAGGCTCTTAG+TGG | 0.462014 | 4_1:+56050039 | None:intergenic |
| GTTAATAATACTAATAGCTA+TGG | 0.462044 | 4_1:-56051043 | Msa0557600:CDS |
| AACCTCCGTCCCTTGTTGGC+AGG | 0.463366 | 4_1:-56049219 | Msa0557600:CDS |
| CTGGAGCTATTGTATTGTAC+AGG | 0.472485 | 4_1:+56048139 | None:intergenic |
| GTTTCAGTTGCCACGACAAT+GGG | 0.473101 | 4_1:-56048697 | Msa0557600:CDS |
| ACGGTATTAACATAAAGTTT+GGG | 0.475299 | 4_1:+56048588 | None:intergenic |
| CTGATAAAGGTGATTGTACC+AGG | 0.476222 | 4_1:-56050823 | Msa0557600:CDS |
| CATCTATTGTGACAAAGGCT+TGG | 0.480707 | 4_1:-56048102 | Msa0557600:CDS |
| TATGTAAGTTGAACTCTTCA+CGG | 0.481674 | 4_1:+56051106 | None:intergenic |
| TATAAACGAATACCTGTTAC+CGG | 0.485389 | 4_1:+56048334 | None:intergenic |
| GAGAAAGCTGTGAGTGTGAT+TGG | 0.485451 | 4_1:-56050989 | Msa0557600:CDS |
| CCTCTGAAAGATGCTGAAGA+TGG | 0.486026 | 4_1:+56048278 | None:intergenic |
| CGAAAATTCGCAGATCAGAA+TGG | 0.487617 | 4_1:-56048009 | Msa0557600:CDS |
| CCAGGATATTGGGTTGTCAC+TGG | 0.487824 | 4_1:-56047776 | Msa0557600:CDS |
| CTTTCTTATCATTCTATGTG+TGG | 0.488535 | 4_1:-56051135 | Msa0557600:five_prime_UTR |
| TATGGTACACACGTAGTTGT+TGG | 0.495177 | 4_1:-56049554 | Msa0557600:CDS |
| AGAGCCTTGCCTTTGATGGA+TGG | 0.511034 | 4_1:-56050033 | Msa0557600:CDS |
| GGTATTCGTTTATACTTGGA+AGG | 0.511213 | 4_1:-56048325 | Msa0557600:CDS |
| AGCAATTTCTGCAGTTCAGT+CGG | 0.511584 | 4_1:+56049470 | None:intergenic |
| ATGTAAGTTGAACTCTTCAC+GGG | 0.514173 | 4_1:+56051107 | None:intergenic |
| GAAAATTCGCAGATCAGAAT+GGG | 0.514979 | 4_1:-56048008 | Msa0557600:CDS |
| TAGTAAGCATTTCTGTTCGA+AGG | 0.519900 | 4_1:-56049034 | Msa0557600:CDS |
| AGGTCATAACACTTCTATGA+TGG | 0.520173 | 4_1:+56051232 | None:intergenic |
| TTACAATTGGCCTGCCAACA+AGG | 0.520191 | 4_1:+56049209 | None:intergenic |
| GGTGCAAAGTTATGTGTAGA+AGG | 0.521969 | 4_1:-56047755 | Msa0557600:CDS |
| AGAGCCACTGGTTATAAGGT+TGG | 0.524639 | 4_1:+56048994 | None:intergenic |
| TAGCTATGGAAATGCAGGGT+TGG | 0.526822 | 4_1:-56051029 | Msa0557600:CDS |
| TTGTCGGGAAAGATTCCATC+CGG | 0.528086 | 4_1:-56050115 | Msa0557600:CDS |
| GACATTAGGAGACTGTGATA+TGG | 0.529982 | 4_1:+56048968 | None:intergenic |
| TCTCAGGTGAATGCAATCCT+TGG | 0.530122 | 4_1:+56047921 | None:intergenic |
| AGTTTCAGTTGCCACGACAA+TGG | 0.531590 | 4_1:-56048698 | Msa0557600:CDS |
| GAAAACATGCTCCACTTCAC+TGG | 0.533461 | 4_1:+56048178 | None:intergenic |
| GTGGTCCACCTGTGCCAACA+AGG | 0.536601 | 4_1:-56047859 | Msa0557600:CDS |
| AGTAAGCATTTCTGTTCGAA+GGG | 0.537776 | 4_1:-56049033 | Msa0557600:CDS |
| GACACAAAGGAAATGGTAAG+AGG | 0.538834 | 4_1:-56047812 | Msa0557600:CDS |
| ATAAACTCGGCAATTTATCA+TGG | 0.539597 | 4_1:-56047881 | Msa0557600:CDS |
| GATTCTCTGCTTGCAAGTCA+AGG | 0.541130 | 4_1:-56050937 | Msa0557600:CDS |
| TAATAGATAAGGGAACATTA+GGG | 0.541232 | 4_1:+56050849 | None:intergenic |
| CCATCTTCAGCATCTTTCAG+AGG | 0.545066 | 4_1:-56048278 | Msa0557600:CDS |
| AGCATTTCTGTTCGAAGGGG+AGG | 0.555180 | 4_1:-56049029 | Msa0557600:CDS |
| GGAAGAAGGAATTACCTTCA+CGG | 0.561197 | 4_1:+56048569 | None:intergenic |
| ACAATACAATAGCTCCAGAA+TGG | 0.564872 | 4_1:-56048134 | Msa0557600:CDS |
| TCTGAAATTTCTAGGACACC+TGG | 0.574524 | 4_1:+56048253 | None:intergenic |
| GTAGTTGTTGGGGTGAAGAT+GGG | 0.574754 | 4_1:-56049542 | Msa0557600:CDS |
| ATGCTATTGAATTGGCCGGA+TGG | 0.576725 | 4_1:+56050100 | None:intergenic |
| CCAGTGACAACCCAATATCC+TGG | 0.577834 | 4_1:+56047776 | None:intergenic |
| GTGATATGGTTGAGAGCCAC+TGG | 0.578254 | 4_1:+56048982 | None:intergenic |
| TACAATTGGCCTGCCAACAA+GGG | 0.578423 | 4_1:+56049210 | None:intergenic |
| AATATAATATATGTTTGAAG+AGG | 0.582650 | 4_1:+56051212 | None:intergenic |
| AGGTGGCAGAATCTCAATCA+AGG | 0.582915 | 4_1:-56047735 | Msa0557600:CDS |
| AACGAATACCTGTTACCGGC+CGG | 0.583865 | 4_1:+56048338 | None:intergenic |
| TACTTATGGTCGAATACAAG+AGG | 0.584243 | 4_1:+56048654 | None:intergenic |
| TGTTATGAACCATCCATCAA+AGG | 0.584689 | 4_1:+56050024 | None:intergenic |
| TCATTACTGAATTCTGTCCC+AGG | 0.588026 | 4_1:-56048918 | Msa0557600:CDS |
| GAGGACATCGGATCGAAACC+TGG | 0.588872 | 4_1:+56050805 | None:intergenic |
| TTTCAAAGGGTCATATACGC+GGG | 0.593654 | 4_1:+56051262 | None:intergenic |
| TGAATTTGCCATATTCAGGT+CGG | 0.595126 | 4_1:+56047558 | None:intergenic |
| GGTTGATTCGGGAAACCGGC+CGG | 0.595912 | 4_1:-56048353 | Msa0557600:CDS |
| ATGAGTGCAAAGCTTAGCCA+AGG | 0.599460 | 4_1:-56047938 | Msa0557600:CDS |
| TGGTCCACCTGTGCCAACAA+GGG | 0.603608 | 4_1:-56047858 | Msa0557600:CDS |
| GCTACTACGAACCAGTGAAG+TGG | 0.605145 | 4_1:-56048189 | Msa0557600:CDS |
| GTCTACATCTATTGTGACAA+AGG | 0.606707 | 4_1:-56048107 | Msa0557600:CDS |
| TACATCGGTGCCCATTGTCG+TGG | 0.607453 | 4_1:+56048687 | None:intergenic |
| ATTGGCCTGCCAACAAGGGA+CGG | 0.613832 | 4_1:+56049214 | None:intergenic |
| GCAGCAGGGTTCCACGAACA+AGG | 0.617504 | 4_1:+56049938 | None:intergenic |
| CTTAAGACTTGGATACTCAA+CGG | 0.619317 | 4_1:-56048041 | Msa0557600:CDS |
| CTAATAGCTATGGAAATGCA+GGG | 0.619542 | 4_1:-56051033 | Msa0557600:CDS |
| CAATGACCTGATTAAAAGTG+AGG | 0.619839 | 4_1:+56050786 | None:intergenic |
| TGAACCATCCATCAAAGGCA+AGG | 0.620613 | 4_1:+56050029 | None:intergenic |
| ATTCGCAGATCAGAATGGGA+TGG | 0.626214 | 4_1:-56048004 | Msa0557600:CDS |
| AATTTCTGCAGTTCAGTCGG+CGG | 0.627237 | 4_1:+56049473 | None:intergenic |
| AGAGGTCCAGAGGATCCACC+AGG | 0.627751 | 4_1:-56047794 | Msa0557600:CDS |
| CAAAGCTTAGGGGACTGCAC+AGG | 0.627915 | 4_1:-56049246 | Msa0557600:CDS |
| TCACTGGTTCGTAGTAGCCT+CGG | 0.627996 | 4_1:+56048194 | None:intergenic |
| ACTTTATGTTAATACCGTGA+AGG | 0.630084 | 4_1:-56048583 | Msa0557600:intron |
| GGAAATGGTAAGAGGTCCAG+AGG | 0.631442 | 4_1:-56047804 | Msa0557600:CDS |
| GATCCTATTGACGAACCAGA+TGG | 0.633830 | 4_1:-56048217 | Msa0557600:CDS |
| ATTGACGAACCAGATGGCCG+AGG | 0.634066 | 4_1:-56048211 | Msa0557600:CDS |
| GTTGTTGGGGTGAAGATGGG+AGG | 0.635084 | 4_1:-56049539 | Msa0557600:CDS |
| ATAAGAGTGAACTGAAGTGA+CGG | 0.635680 | 4_1:+56048615 | None:intergenic |
| GAACATGCTATTGAATTGGC+CGG | 0.637602 | 4_1:+56050096 | None:intergenic |
| ATCTAAAGTTGACATAAACT+CGG | 0.638507 | 4_1:-56047894 | Msa0557600:CDS |
| TTCCTGATATAGCCGCAGGA+TGG | 0.640932 | 4_1:+56049393 | None:intergenic |
| TTAGGGACAACAACACCAGA+AGG | 0.641365 | 4_1:+56050866 | None:intergenic |
| TGGTACACACGTAGTTGTTG+GGG | 0.641806 | 4_1:-56049552 | Msa0557600:CDS |
| AACTCGGCAATTTATCATGG+TGG | 0.643726 | 4_1:-56047878 | Msa0557600:CDS |
| ACAATAGTAGTTCAAACACA+AGG | 0.647296 | 4_1:-56050901 | Msa0557600:CDS |
| TTAAGCAATTAGCCGACGAG+AGG | 0.648867 | 4_1:-56049448 | Msa0557600:CDS |
| ATCCGCAGAAAACCTCTCGT+CGG | 0.653656 | 4_1:+56049436 | None:intergenic |
| GCTGTGAGTGTGATTGGTCA+AGG | 0.654752 | 4_1:-56050983 | Msa0557600:CDS |
| GGCCTGCCAACAAGGGACGG+AGG | 0.659617 | 4_1:+56049217 | None:intergenic |
| GTAAGCATTTCTGTTCGAAG+GGG | 0.662446 | 4_1:-56049032 | Msa0557600:CDS |
| AAGTTCTAATGTCCATCCTG+CGG | 0.667092 | 4_1:-56049405 | Msa0557600:CDS |
| CTGATTAAAAGTGAGGACAT+CGG | 0.670013 | 4_1:+56050793 | None:intergenic |
| TATGCCAACCTTATAACCAG+TGG | 0.681047 | 4_1:-56048998 | Msa0557600:CDS |
| GATGATCATACAAAGCTTAG+GGG | 0.687701 | 4_1:-56049256 | Msa0557600:CDS |
| CTTACTCGGCAAGAGCAGCA+GGG | 0.689201 | 4_1:+56049924 | None:intergenic |
| GCTGAAGATGGATTGATAGG+TGG | 0.699756 | 4_1:+56048290 | None:intergenic |
| GTGACAACCCAATATCCTGG+TGG | 0.702984 | 4_1:+56047779 | None:intergenic |
| CAATAGTAGTTCAAACACAA+GGG | 0.705935 | 4_1:-56050900 | Msa0557600:CDS |
| AGAGGCAGATCACCATACAT+CGG | 0.713318 | 4_1:+56048672 | None:intergenic |
| GCAAAGTTATGTGTAGAAGG+TGG | 0.744121 | 4_1:-56047752 | Msa0557600:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATCTTATGATAATTATTTTT+GGG | + | chr4_1:56047540-56047559 | None:intergenic | 10.0% |
| !!! | TATCTTATGATAATTATTTT+TGG | + | chr4_1:56047541-56047560 | None:intergenic | 10.0% |
| !!! | TATTTTAAACTAAATAAACA+TGG | - | chr4_1:56049242-56049261 | Msa0557600:CDS | 10.0% |
| !!! | TCTTATGATAATTATTTTTG+GGG | + | chr4_1:56047539-56047558 | None:intergenic | 15.0% |
| !! | AATATAATATATGTTTGAAG+AGG | + | chr4_1:56047631-56047650 | None:intergenic | 15.0% |
| !! | ATGAAACTATTGAATATAAT+TGG | + | chr4_1:56048161-56048180 | None:intergenic | 15.0% |
| !! | AAGAAATAAAGATTTAAGTA+AGG | + | chr4_1:56049175-56049194 | None:intergenic | 15.0% |
| !!! | AGTTTAAAATACTATTAACT+TGG | + | chr4_1:56049233-56049252 | None:intergenic | 15.0% |
| !!! | TATTATAAGAATTTCTTTTC+AGG | - | chr4_1:56049780-56049799 | Msa0557600:intron | 15.0% |
| !! | AGAAGAAAAAAATAAGTATT+GGG | + | chr4_1:56050023-56050042 | None:intergenic | 15.0% |
| !! | TCTATATACTATTCTTTATT+AGG | + | chr4_1:56051344-56051363 | None:intergenic | 15.0% |
| !!! | CTTATGATAATTATTTTTGG+GGG | + | chr4_1:56047538-56047557 | None:intergenic | 20.0% |
| !! | GTTAATAATACTAATAGCTA+TGG | - | chr4_1:56047797-56047816 | Msa0557600:CDS | 20.0% |
| !! | TTATCAGACTTAATAGATAA+GGG | + | chr4_1:56048004-56048023 | None:intergenic | 20.0% |
| !! | TTTATCAGACTTAATAGATA+AGG | + | chr4_1:56048005-56048024 | None:intergenic | 20.0% |
| !! | TTATCTATTAAGTCTGATAA+AGG | - | chr4_1:56048004-56048023 | Msa0557600:CDS | 20.0% |
| !!! | ATTATATGATTTTCTAGTTG+CGG | - | chr4_1:56048336-56048355 | Msa0557600:CDS | 20.0% |
| !!! | TGAAATTTTTTGTTTGCATT+TGG | - | chr4_1:56048495-56048514 | Msa0557600:intron | 20.0% |
| !! | ACATATAAGTGATATGAAAA+GGG | - | chr4_1:56048603-56048622 | Msa0557600:CDS | 20.0% |
| !!! | ATATGAAAAGGGAAATTTTA+GGG | - | chr4_1:56048614-56048633 | Msa0557600:CDS | 20.0% |
| !! | AATCTGAATTTCAGTTAAAT+TGG | - | chr4_1:56048662-56048681 | Msa0557600:CDS | 20.0% |
| !! | TAAAACTATAAGCATTCATT+TGG | - | chr4_1:56049063-56049082 | Msa0557600:intron | 20.0% |
| !! | AGATCATGAAGATAAAAATA+TGG | - | chr4_1:56049504-56049523 | Msa0557600:CDS | 20.0% |
| !! | TGAAGATAAAAATATGGAAA+TGG | - | chr4_1:56049510-56049529 | Msa0557600:CDS | 20.0% |
| !! | CAGAAGAAAAAAATAAGTAT+TGG | + | chr4_1:56050024-56050043 | None:intergenic | 20.0% |
| !!! | CAATACTTATTTTTTTCTTC+TGG | - | chr4_1:56050022-56050041 | Msa0557600:CDS | 20.0% |
| !! | TTCTTTGTTGAAATATATGT+TGG | - | chr4_1:56050052-56050071 | Msa0557600:CDS | 20.0% |
| !!! | TATTAAAGAGTATTGAAACT+TGG | + | chr4_1:56050295-56050314 | None:intergenic | 20.0% |
| ! | TTGAACTACTATTGTCAATA+TGG | + | chr4_1:56047934-56047953 | None:intergenic | 25.0% |
| ! | TAATAGATAAGGGAACATTA+GGG | + | chr4_1:56047994-56048013 | None:intergenic | 25.0% |
| ! | TTAATAGATAAGGGAACATT+AGG | + | chr4_1:56047995-56048014 | None:intergenic | 25.0% |
| ! | CTATTGAATATAATTGGTCA+TGG | + | chr4_1:56048155-56048174 | None:intergenic | 25.0% |
| ! | TTCAATCAACTAGTTGAAAA+AGG | + | chr4_1:56048207-56048226 | None:intergenic | 25.0% |
| !! | ATAGAAAAGTTATTGACTAG+TGG | - | chr4_1:56048250-56048269 | Msa0557600:CDS | 25.0% |
| ! | ACTATTGATAAAACACAGTT+AGG | + | chr4_1:56048316-56048335 | None:intergenic | 25.0% |
| ! | TAGTGATCAGAATTCAATTA+TGG | + | chr4_1:56048466-56048485 | None:intergenic | 25.0% |
| ! | TGCAAACAAAAAATTTCAAG+TGG | + | chr4_1:56048493-56048512 | None:intergenic | 25.0% |
| ! | CAAAAGTCAAAAGGTTAAAA+AGG | + | chr4_1:56048540-56048559 | None:intergenic | 25.0% |
| ! | AAAAAAAAGGTAAATCAACC+AGG | + | chr4_1:56048581-56048600 | None:intergenic | 25.0% |
| !!! | TGGTTGATTTACCTTTTTTT+TGG | - | chr4_1:56048580-56048599 | Msa0557600:intron | 25.0% |
| ! | CACTTATATGTCCAAAAAAA+AGG | + | chr4_1:56048594-56048613 | None:intergenic | 25.0% |
| ! | GACATATAAGTGATATGAAA+AGG | - | chr4_1:56048602-56048621 | Msa0557600:CDS | 25.0% |
| !! | GATATGAAAAGGGAAATTTT+AGG | - | chr4_1:56048613-56048632 | Msa0557600:CDS | 25.0% |
| !! | TATGAAAAGGGAAATTTTAG+GGG | - | chr4_1:56048615-56048634 | Msa0557600:CDS | 25.0% |
| !!! | TTTTTTCAGAGTTTCAGAAA+GGG | + | chr4_1:56048876-56048895 | None:intergenic | 25.0% |
| ! | GCATAACAATAATACTTACT+CGG | + | chr4_1:56048933-56048952 | None:intergenic | 25.0% |
| !! | TTTTAGCAATTATAGAGCAA+GGG | + | chr4_1:56049048-56049067 | None:intergenic | 25.0% |
| !! | TTGAATGTTACTGCTATTTA+GGG | + | chr4_1:56049117-56049136 | None:intergenic | 25.0% |
| ! | ATATCTTTGATCATGTTTGT+AGG | - | chr4_1:56049562-56049581 | Msa0557600:CDS | 25.0% |
| ! | AAAAATGCTAACATCATTCT+TGG | + | chr4_1:56049666-56049685 | None:intergenic | 25.0% |
| ! | AAAGACATTGATATGACATT+AGG | + | chr4_1:56049889-56049908 | None:intergenic | 25.0% |
| ! | TAATGTCATATCAATGTCTT+TGG | - | chr4_1:56049888-56049907 | Msa0557600:intron | 25.0% |
| ! | GAATTCAGTAATGAAGTAAT+AGG | + | chr4_1:56049916-56049935 | None:intergenic | 25.0% |
| !!! | AAATGGATTTTTAAGTCATG+CGG | - | chr4_1:56049945-56049964 | Msa0557600:CDS | 25.0% |
| !!! | AAAAAATAAGTATTGGGCAA+AGG | + | chr4_1:56050017-56050036 | None:intergenic | 25.0% |
| ! | TATTCGACCATAAGTATAAA+AGG | - | chr4_1:56050193-56050212 | Msa0557600:intron | 25.0% |
| ! | ACGGTATTAACATAAAGTTT+GGG | + | chr4_1:56050255-56050274 | None:intergenic | 25.0% |
| !!! | AAAGTACTTTTCTTAAGACT+TGG | - | chr4_1:56050788-56050807 | Msa0557600:intron | 25.0% |
| !! | ATCTAAAGTTGACATAAACT+CGG | - | chr4_1:56050946-56050965 | Msa0557600:CDS | 25.0% |
| !! | TCGACAAAATTAAGCATTTT+GGG | + | chr4_1:56051010-56051029 | None:intergenic | 25.0% |
| !! | GTATATTTTGTGATGTCATT+CGG | - | chr4_1:56051253-56051272 | Msa0557600:five_prime_UTR | 25.0% |
| !!! | ATGATAATTATTTTTGGGGG+TGG | + | chr4_1:56047535-56047554 | None:intergenic | 30.0% |
| CTTTCTTATCATTCTATGTG+TGG | - | chr4_1:56047705-56047724 | Msa0557600:CDS | 30.0% | |
| ! | TATGTAAGTTGAACTCTTCA+CGG | + | chr4_1:56047737-56047756 | None:intergenic | 30.0% |
| !! | ATAGCTGCAATATTTTTGTG+TGG | - | chr4_1:56047754-56047773 | Msa0557600:CDS | 30.0% |
| ACAATAGTAGTTCAAACACA+AGG | - | chr4_1:56047939-56047958 | Msa0557600:CDS | 30.0% | |
| CAATAGTAGTTCAAACACAA+GGG | - | chr4_1:56047940-56047959 | Msa0557600:CDS | 30.0% | |
| AAGAAATTGAAGCAGAAGTA+AGG | + | chr4_1:56048089-56048108 | None:intergenic | 30.0% | |
| TTACATATTTGTGCTGAACA+TGG | + | chr4_1:56048231-56048250 | None:intergenic | 30.0% | |
| ! | AGTTGATATATTGAGCAAGT+TGG | - | chr4_1:56048283-56048302 | Msa0557600:CDS | 30.0% |
| ATCAGTCTTCAAAAGTCAAA+AGG | + | chr4_1:56048549-56048568 | None:intergenic | 30.0% | |
| TGTTCGACATGAAAAAATGT+TGG | - | chr4_1:56048762-56048781 | Msa0557600:intron | 30.0% | |
| !!! | CTTTTTTCAGAGTTTCAGAA+AGG | + | chr4_1:56048877-56048896 | None:intergenic | 30.0% |
| TTTAGCAATTATAGAGCAAG+GGG | + | chr4_1:56049047-56049066 | None:intergenic | 30.0% | |
| !! | GTTTTAGCAATTATAGAGCA+AGG | + | chr4_1:56049049-56049068 | None:intergenic | 30.0% |
| ! | TGAATGTTACTGCTATTTAG+GGG | + | chr4_1:56049116-56049135 | None:intergenic | 30.0% |
| ! | GTTGAATGTTACTGCTATTT+AGG | + | chr4_1:56049118-56049137 | None:intergenic | 30.0% |
| AAATCCTCCTATATGTTGAT+TGG | - | chr4_1:56049206-56049225 | Msa0557600:CDS | 30.0% | |
| CTAAATAAACATGGTTCTTC+AGG | - | chr4_1:56049251-56049270 | Msa0557600:CDS | 30.0% | |
| ! | TTCAGGTTCATTGAAAAGTA+TGG | - | chr4_1:56049268-56049287 | Msa0557600:intron | 30.0% |
| GGCTATATCAGGAAAATTAA+AGG | - | chr4_1:56049456-56049475 | Msa0557600:CDS | 30.0% | |
| ! | TTGGAGTGACTTTTTACAAT+TGG | + | chr4_1:56049647-56049666 | None:intergenic | 30.0% |
| GACTTAAAAATCCATTTCCT+GGG | + | chr4_1:56049942-56049961 | None:intergenic | 30.0% | |
| TGACTTAAAAATCCATTTCC+TGG | + | chr4_1:56049943-56049962 | None:intergenic | 30.0% | |
| ! | ACGCATTCCTTTTATACTTA+TGG | + | chr4_1:56050203-56050222 | None:intergenic | 30.0% |
| CACGGTATTAACATAAAGTT+TGG | + | chr4_1:56050256-56050275 | None:intergenic | 30.0% | |
| ACTTTATGTTAATACCGTGA+AGG | - | chr4_1:56050257-56050276 | Msa0557600:intron | 30.0% | |
| ACTTGTATAGCAAGAATGTA+AGG | - | chr4_1:56050337-56050356 | Msa0557600:intron | 30.0% | |
| ATGAAGAACACGATTATTGT+AGG | - | chr4_1:56050416-56050435 | Msa0557600:intron | 30.0% | |
| !! | TTTCAATAAGCAGGTTGATT+CGG | - | chr4_1:56050475-56050494 | Msa0557600:intron | 30.0% |
| TATAAACGAATACCTGTTAC+CGG | + | chr4_1:56050509-56050528 | None:intergenic | 30.0% | |
| AACAGGTATTCGTTTATACT+TGG | - | chr4_1:56050511-56050530 | Msa0557600:intron | 30.0% | |
| !! | TGTGATCTTCTGAAATTTCT+AGG | + | chr4_1:56050598-56050617 | None:intergenic | 30.0% |
| ! | AAATCCTGATTTTCTAGATG+AGG | + | chr4_1:56050870-56050889 | None:intergenic | 30.0% |
| ! | TCAACTTTAGATTGTTTCTC+AGG | + | chr4_1:56050938-56050957 | None:intergenic | 30.0% |
| ATAAACTCGGCAATTTATCA+TGG | - | chr4_1:56050959-56050978 | Msa0557600:CDS | 30.0% | |
| ! | GTCGACAAAATTAAGCATTT+TGG | + | chr4_1:56051011-56051030 | None:intergenic | 30.0% |
| ACAATGAATTTGCCATATTC+AGG | + | chr4_1:56051289-56051308 | None:intergenic | 30.0% | |
| ! | TTTTCAAAGGGTCATATACG+CGG | + | chr4_1:56047582-56047601 | None:intergenic | 35.0% |
| ! | TGATGGAGAGTCTTTTCAAA+GGG | + | chr4_1:56047594-56047613 | None:intergenic | 35.0% |
| !! | ATGATGGAGAGTCTTTTCAA+AGG | + | chr4_1:56047595-56047614 | None:intergenic | 35.0% |
| AGGTCATAACACTTCTATGA+TGG | + | chr4_1:56047611-56047630 | None:intergenic | 35.0% | |
| ! | ATGTAAGTTGAACTCTTCAC+GGG | + | chr4_1:56047736-56047755 | None:intergenic | 35.0% |
| ! | TTTTTGTGTGGCTTGAGTAA+TGG | - | chr4_1:56047766-56047785 | Msa0557600:CDS | 35.0% |
| ! | TTTTGTGTGGCTTGAGTAAT+GGG | - | chr4_1:56047767-56047786 | Msa0557600:CDS | 35.0% |
| ACTAATAGCTATGGAAATGC+AGG | - | chr4_1:56047806-56047825 | Msa0557600:CDS | 35.0% | |
| CTAATAGCTATGGAAATGCA+GGG | - | chr4_1:56047807-56047826 | Msa0557600:CDS | 35.0% | |
| CTGATTAAAAGTGAGGACAT+CGG | + | chr4_1:56048050-56048069 | None:intergenic | 35.0% | |
| CAATGACCTGATTAAAAGTG+AGG | + | chr4_1:56048057-56048076 | None:intergenic | 35.0% | |
| TCATTAGATACGATTCATCG+TGG | - | chr4_1:56048400-56048419 | Msa0557600:intron | 35.0% | |
| AAGACTGATCATGTATTACC+TGG | - | chr4_1:56048560-56048579 | Msa0557600:intron | 35.0% | |
| CAACAGACAACTATCTTTGT+CGG | - | chr4_1:56048709-56048728 | Msa0557600:CDS | 35.0% | |
| AACAGACAACTATCTTTGTC+GGG | - | chr4_1:56048710-56048729 | Msa0557600:CDS | 35.0% | |
| TGTCGAACATGCTATTGAAT+TGG | + | chr4_1:56048751-56048770 | None:intergenic | 35.0% | |
| ACATGAAAAAATGTTGGTCC+AGG | - | chr4_1:56048768-56048787 | Msa0557600:intron | 35.0% | |
| CATGAAAAAATGTTGGTCCA+GGG | - | chr4_1:56048769-56048788 | Msa0557600:intron | 35.0% | |
| TGTTATGAACCATCCATCAA+AGG | + | chr4_1:56048819-56048838 | None:intergenic | 35.0% | |
| GACGACTATTAACTAGAAGA+GGG | + | chr4_1:56048960-56048979 | None:intergenic | 35.0% | |
| TGACGACTATTAACTAGAAG+AGG | + | chr4_1:56048961-56048980 | None:intergenic | 35.0% | |
| ACTTGGTCCAATCAACATAT+AGG | + | chr4_1:56049216-56049235 | None:intergenic | 35.0% | |
| AGGATGATCATACAAAGCTT+AGG | - | chr4_1:56049582-56049601 | Msa0557600:intron | 35.0% | |
| GGATGATCATACAAAGCTTA+GGG | - | chr4_1:56049583-56049602 | Msa0557600:intron | 35.0% | |
| GATGATCATACAAAGCTTAG+GGG | - | chr4_1:56049584-56049603 | Msa0557600:intron | 35.0% | |
| ATAATAAGTTCGACTGTTCG+AGG | + | chr4_1:56049766-56049785 | None:intergenic | 35.0% | |
| TAGTAAGCATTTCTGTTCGA+AGG | - | chr4_1:56049806-56049825 | Msa0557600:intron | 35.0% | |
| AGTAAGCATTTCTGTTCGAA+GGG | - | chr4_1:56049807-56049826 | Msa0557600:intron | 35.0% | |
| TGATGAAGTTCTTCTATTGC+AGG | + | chr4_1:56050114-56050133 | None:intergenic | 35.0% | |
| TACTTATGGTCGAATACAAG+AGG | + | chr4_1:56050189-56050208 | None:intergenic | 35.0% | |
| ATAAGAGTGAACTGAAGTGA+CGG | + | chr4_1:56050228-56050247 | None:intergenic | 35.0% | |
| TCACTTCAGTTCACTCTTAT+GGG | - | chr4_1:56050228-56050247 | Msa0557600:intron | 35.0% | |
| !! | GAGTATTGAAACTTGGAAGA+AGG | + | chr4_1:56050288-56050307 | None:intergenic | 35.0% |
| TTGTAGGAATTAGTTAGCAC+TGG | - | chr4_1:56050432-56050451 | Msa0557600:intron | 35.0% | |
| TCAACCTGCTTATTGAAACA+AGG | + | chr4_1:56050473-56050492 | None:intergenic | 35.0% | |
| !! | TTCAATAAGCAGGTTGATTC+GGG | - | chr4_1:56050476-56050495 | Msa0557600:intron | 35.0% |
| GGTATTCGTTTATACTTGGA+AGG | - | chr4_1:56050515-56050534 | Msa0557600:intron | 35.0% | |
| ACAATACAATAGCTCCAGAA+TGG | - | chr4_1:56050706-56050725 | Msa0557600:intron | 35.0% | |
| GTCTACATCTATTGTGACAA+AGG | - | chr4_1:56050733-56050752 | Msa0557600:intron | 35.0% | |
| ! | TTGGTTTGAGGTTAAGCTAA+TGG | - | chr4_1:56050757-56050776 | Msa0557600:intron | 35.0% |
| ! | TGGTTTGAGGTTAAGCTAAT+GGG | - | chr4_1:56050758-56050777 | Msa0557600:intron | 35.0% |
| CTTAAGACTTGGATACTCAA+CGG | - | chr4_1:56050799-56050818 | Msa0557600:CDS | 35.0% | |
| GAAAATTCGCAGATCAGAAT+GGG | - | chr4_1:56050832-56050851 | Msa0557600:CDS | 35.0% | |
| ! | GATTTTCTAGATGAGGTTGA+AGG | + | chr4_1:56050863-56050882 | None:intergenic | 35.0% |
| TCAACCTCATCTAGAAAATC+AGG | - | chr4_1:56050863-56050882 | Msa0557600:CDS | 35.0% | |
| ! | GCTTAATTTTGTCGACACAA+AGG | - | chr4_1:56051015-56051034 | Msa0557600:CDS | 35.0% |
| ! | TTTTGTCGACACAAAGGAAA+TGG | - | chr4_1:56051021-56051040 | Msa0557600:CDS | 35.0% |
| TGAATTTGCCATATTCAGGT+CGG | + | chr4_1:56051285-56051304 | None:intergenic | 35.0% | |
| !!! | CTGACTGCTGATTTTGTTTT+TGG | - | chr4_1:56051310-56051329 | Msa0557600:five_prime_UTR | 35.0% |
| TTTCAAAGGGTCATATACGC+GGG | + | chr4_1:56047581-56047600 | None:intergenic | 40.0% | |
| CAACACCAGAAGGAAAAACA+AGG | + | chr4_1:56047967-56047986 | None:intergenic | 40.0% | |
| CTGATAAAGGTGATTGTACC+AGG | - | chr4_1:56048017-56048036 | Msa0557600:CDS | 40.0% | |
| !! | CGATGTCCTCACTTTTAATC+AGG | - | chr4_1:56048048-56048067 | Msa0557600:CDS | 40.0% |
| ! | AGTTATTGACTAGTGGCAGA+TGG | - | chr4_1:56048257-56048276 | Msa0557600:CDS | 40.0% |
| !! | AAGGGAAATTTTAGGGGTGA+TGG | - | chr4_1:56048621-56048640 | Msa0557600:CDS | 40.0% |
| !! | AGGGAAATTTTAGGGGTGAT+GGG | - | chr4_1:56048622-56048641 | Msa0557600:CDS | 40.0% |
| GAACATGCTATTGAATTGGC+CGG | + | chr4_1:56048747-56048766 | None:intergenic | 40.0% | |
| TGGTCCAATCAACATATAGG+AGG | + | chr4_1:56049213-56049232 | None:intergenic | 40.0% | |
| TATGGTACACACGTAGTTGT+TGG | - | chr4_1:56049286-56049305 | Msa0557600:intron | 40.0% | |
| ATGGTACACACGTAGTTGTT+GGG | - | chr4_1:56049287-56049306 | Msa0557600:intron | 40.0% | |
| AGCAATTTCTGCAGTTCAGT+CGG | + | chr4_1:56049373-56049392 | None:intergenic | 40.0% | |
| ! | AAGTTCTAATGTCCATCCTG+CGG | - | chr4_1:56049435-56049454 | Msa0557600:CDS | 40.0% |
| ! | AATTTTCCTGATATAGCCGC+AGG | + | chr4_1:56049454-56049473 | None:intergenic | 40.0% |
| AGAATAGATGCAAAGTGCAC+AGG | + | chr4_1:56049730-56049749 | None:intergenic | 40.0% | |
| GTAAGCATTTCTGTTCGAAG+GGG | - | chr4_1:56049808-56049827 | Msa0557600:intron | 40.0% | |
| TATGCCAACCTTATAACCAG+TGG | - | chr4_1:56049842-56049861 | Msa0557600:intron | 40.0% | |
| GACATTAGGAGACTGTGATA+TGG | + | chr4_1:56049875-56049894 | None:intergenic | 40.0% | |
| TCATTACTGAATTCTGTCCC+AGG | - | chr4_1:56049922-56049941 | Msa0557600:intron | 40.0% | |
| GTCACTTCAGTTCACTCTTA+TGG | - | chr4_1:56050227-56050246 | Msa0557600:intron | 40.0% | |
| GGAAGAAGGAATTACCTTCA+CGG | + | chr4_1:56050274-56050293 | None:intergenic | 40.0% | |
| ! | TCGACCTTGTTTCAATAAGC+AGG | - | chr4_1:56050466-56050485 | Msa0557600:intron | 40.0% |
| !! | GATGCTGAAGATGGATTGAT+AGG | + | chr4_1:56050556-56050575 | None:intergenic | 40.0% |
| !! | TCTGAAATTTCTAGGACACC+TGG | + | chr4_1:56050590-56050609 | None:intergenic | 40.0% |
| CTGGAGCTATTGTATTGTAC+AGG | + | chr4_1:56050704-56050723 | None:intergenic | 40.0% | |
| AGATGTAGACTCATCCATTC+TGG | + | chr4_1:56050723-56050742 | None:intergenic | 40.0% | |
| CATCTATTGTGACAAAGGCT+TGG | - | chr4_1:56050738-56050757 | Msa0557600:intron | 40.0% | |
| CGAAAATTCGCAGATCAGAA+TGG | - | chr4_1:56050831-56050850 | Msa0557600:CDS | 40.0% | |
| AACTCGGCAATTTATCATGG+TGG | - | chr4_1:56050962-56050981 | Msa0557600:CDS | 40.0% | |
| GACACAAAGGAAATGGTAAG+AGG | - | chr4_1:56051028-56051047 | Msa0557600:CDS | 40.0% | |
| GGTGCAAAGTTATGTGTAGA+AGG | - | chr4_1:56051085-56051104 | Msa0557600:five_prime_UTR | 40.0% | |
| GCAAAGTTATGTGTAGAAGG+TGG | - | chr4_1:56051088-56051107 | Msa0557600:five_prime_UTR | 40.0% | |
| GGGTGGAGAAGTAAAAAGGA+CGG | + | chr4_1:56047518-56047537 | None:intergenic | 45.0% | |
| TTGGGGGTGGAGAAGTAAAA+AGG | + | chr4_1:56047522-56047541 | None:intergenic | 45.0% | |
| TAGCTATGGAAATGCAGGGT+TGG | - | chr4_1:56047811-56047830 | Msa0557600:CDS | 45.0% | |
| GCTTTCTCAGCTGCTAATTG+AGG | + | chr4_1:56047839-56047858 | None:intergenic | 45.0% | |
| GAGAAAGCTGTGAGTGTGAT+TGG | - | chr4_1:56047851-56047870 | Msa0557600:CDS | 45.0% | |
| GATTCTCTGCTTGCAAGTCA+AGG | - | chr4_1:56047903-56047922 | Msa0557600:CDS | 45.0% | |
| !!! | AGGGACCTTGTTTTTCCTTC+TGG | - | chr4_1:56047959-56047978 | Msa0557600:CDS | 45.0% |
| TTAGGGACAACAACACCAGA+AGG | + | chr4_1:56047977-56047996 | None:intergenic | 45.0% | |
| TGTTAGATCCATCTAGTGCG+TGG | - | chr4_1:56048435-56048454 | Msa0557600:intron | 45.0% | |
| TGGTAATACCACGCACTAGA+TGG | + | chr4_1:56048446-56048465 | None:intergenic | 45.0% | |
| TTGTCGGGAAAGATTCCATC+CGG | - | chr4_1:56048725-56048744 | Msa0557600:CDS | 45.0% | |
| ATGCTATTGAATTGGCCGGA+TGG | + | chr4_1:56048743-56048762 | None:intergenic | 45.0% | |
| ATCAAAGGCAAGGCTCTTAG+TGG | + | chr4_1:56048804-56048823 | None:intergenic | 45.0% | |
| ACTAAGAGCCTTGCCTTTGA+TGG | - | chr4_1:56048803-56048822 | Msa0557600:intron | 45.0% | |
| TGAACCATCCATCAAAGGCA+AGG | + | chr4_1:56048814-56048833 | None:intergenic | 45.0% | |
| ! | AAAAAGACGTGCCTTGTTCG+TGG | - | chr4_1:56048891-56048910 | Msa0557600:CDS | 45.0% |
| TGGTACACACGTAGTTGTTG+GGG | - | chr4_1:56049288-56049307 | Msa0557600:intron | 45.0% | |
| GTAGTTGTTGGGGTGAAGAT+GGG | - | chr4_1:56049298-56049317 | Msa0557600:intron | 45.0% | |
| AATTTCTGCAGTTCAGTCGG+CGG | + | chr4_1:56049370-56049389 | None:intergenic | 45.0% | |
| TTAAGCAATTAGCCGACGAG+AGG | - | chr4_1:56049392-56049411 | Msa0557600:CDS | 45.0% | |
| ! | TACAATTGGCCTGCCAACAA+GGG | + | chr4_1:56049633-56049652 | None:intergenic | 45.0% |
| ! | TTACAATTGGCCTGCCAACA+AGG | + | chr4_1:56049634-56049653 | None:intergenic | 45.0% |
| AAGTTCGACTGTTCGAGGAT+AGG | + | chr4_1:56049761-56049780 | None:intergenic | 45.0% | |
| ! | AGAGCCACTGGTTATAAGGT+TGG | + | chr4_1:56049849-56049868 | None:intergenic | 45.0% |
| ! | GTTGAGAGCCACTGGTTATA+AGG | + | chr4_1:56049853-56049872 | None:intergenic | 45.0% |
| CTGAATTCTGTCCCAGGAAA+TGG | - | chr4_1:56049928-56049947 | Msa0557600:intron | 45.0% | |
| CAAAGGAAAACCAAAGTCGC+AGG | + | chr4_1:56050000-56050019 | None:intergenic | 45.0% | |
| AGTTTCAGTTGCCACGACAA+TGG | - | chr4_1:56050142-56050161 | Msa0557600:CDS | 45.0% | |
| GTTTCAGTTGCCACGACAAT+GGG | - | chr4_1:56050143-56050162 | Msa0557600:CDS | 45.0% | |
| AGAGGCAGATCACCATACAT+CGG | + | chr4_1:56050171-56050190 | None:intergenic | 45.0% | |
| !! | GCTGAAGATGGATTGATAGG+TGG | + | chr4_1:56050553-56050572 | None:intergenic | 45.0% |
| ! | CCTCTGAAAGATGCTGAAGA+TGG | + | chr4_1:56050565-56050584 | None:intergenic | 45.0% |
| CCATCTTCAGCATCTTTCAG+AGG | - | chr4_1:56050562-56050581 | Msa0557600:intron | 45.0% | |
| GATCCTATTGACGAACCAGA+TGG | - | chr4_1:56050623-56050642 | Msa0557600:intron | 45.0% | |
| GAAAACATGCTCCACTTCAC+TGG | + | chr4_1:56050665-56050684 | None:intergenic | 45.0% | |
| ! | TGTGACAAAGGCTTGGTTTG+AGG | - | chr4_1:56050745-56050764 | Msa0557600:intron | 45.0% |
| ATTCGCAGATCAGAATGGGA+TGG | - | chr4_1:56050836-56050855 | Msa0557600:CDS | 45.0% | |
| ATGAGTGCAAAGCTTAGCCA+AGG | - | chr4_1:56050902-56050921 | Msa0557600:CDS | 45.0% | |
| TCTCAGGTGAATGCAATCCT+TGG | + | chr4_1:56050922-56050941 | None:intergenic | 45.0% | |
| AGAGGATCCACCAGGATATT+GGG | - | chr4_1:56051054-56051073 | Msa0557600:CDS | 45.0% | |
| AGGTGGCAGAATCTCAATCA+AGG | - | chr4_1:56051105-56051124 | Msa0557600:five_prime_UTR | 45.0% | |
| ! | GCTGTGAGTGTGATTGGTCA+AGG | - | chr4_1:56047857-56047876 | Msa0557600:CDS | 50.0% |
| AGAGCCTTGCCTTTGATGGA+TGG | - | chr4_1:56048807-56048826 | Msa0557600:intron | 50.0% | |
| CGTAGTTGTTGGGGTGAAGA+TGG | - | chr4_1:56049297-56049316 | Msa0557600:intron | 50.0% | |
| ATCCGCAGAAAACCTCTCGT+CGG | + | chr4_1:56049407-56049426 | None:intergenic | 50.0% | |
| TTCCTGATATAGCCGCAGGA+TGG | + | chr4_1:56049450-56049469 | None:intergenic | 50.0% | |
| AACAAACCTCCGTCCCTTGT+TGG | - | chr4_1:56049617-56049636 | Msa0557600:intron | 50.0% | |
| AGCATTTCTGTTCGAAGGGG+AGG | - | chr4_1:56049811-56049830 | Msa0557600:intron | 50.0% | |
| GTGATATGGTTGAGAGCCAC+TGG | + | chr4_1:56049861-56049880 | None:intergenic | 50.0% | |
| TGAGTAGACACCTGCGACTT+TGG | - | chr4_1:56049987-56050006 | Msa0557600:CDS | 50.0% | |
| !! | AGCAGGTTGATTCGGGAAAC+CGG | - | chr4_1:56050483-56050502 | Msa0557600:intron | 50.0% |
| AACGAATACCTGTTACCGGC+CGG | + | chr4_1:56050505-56050524 | None:intergenic | 50.0% | |
| CAGCATCTTTCAGAGGTTCC+AGG | - | chr4_1:56050569-56050588 | Msa0557600:intron | 50.0% | |
| !! | TCACTGGTTCGTAGTAGCCT+CGG | + | chr4_1:56050649-56050668 | None:intergenic | 50.0% |
| GCTACTACGAACCAGTGAAG+TGG | - | chr4_1:56050651-56050670 | Msa0557600:intron | 50.0% | |
| !! | AGCATTTTGGGAGCCCTTGT+TGG | + | chr4_1:56050998-56051017 | None:intergenic | 50.0% |
| GGAAATGGTAAGAGGTCCAG+AGG | - | chr4_1:56051036-56051055 | Msa0557600:CDS | 50.0% | |
| ! | CAATATCCTGGTGGATCCTC+TGG | + | chr4_1:56051055-56051074 | None:intergenic | 50.0% |
| CAGAGGATCCACCAGGATAT+TGG | - | chr4_1:56051053-56051072 | Msa0557600:CDS | 50.0% | |
| GTGACAACCCAATATCCTGG+TGG | + | chr4_1:56051064-56051083 | None:intergenic | 50.0% | |
| CCAGTGACAACCCAATATCC+TGG | + | chr4_1:56051067-56051086 | None:intergenic | 50.0% | |
| ! | CCAGGATATTGGGTTGTCAC+TGG | - | chr4_1:56051064-56051083 | Msa0557600:exon | 50.0% |
| GGCGTAAACCGACCTGAATA+TGG | - | chr4_1:56051274-56051293 | Msa0557600:five_prime_UTR | 50.0% | |
| GAGGACATCGGATCGAAACC+TGG | + | chr4_1:56048038-56048057 | None:intergenic | 55.0% | |
| CTTAGTGGAAGCTGCATCCC+TGG | + | chr4_1:56048789-56048808 | None:intergenic | 55.0% | |
| CTTACTCGGCAAGAGCAGCA+GGG | + | chr4_1:56048919-56048938 | None:intergenic | 55.0% | |
| ACTTACTCGGCAAGAGCAGC+AGG | + | chr4_1:56048920-56048939 | None:intergenic | 55.0% | |
| GTTGTTGGGGTGAAGATGGG+AGG | - | chr4_1:56049301-56049320 | Msa0557600:intron | 55.0% | |
| ! | AGCCGACGAGAGGTTTTCTG+CGG | - | chr4_1:56049402-56049421 | Msa0557600:CDS | 55.0% |
| GTCCATCCTGCGGCTATATC+AGG | - | chr4_1:56049445-56049464 | Msa0557600:CDS | 55.0% | |
| CAAAGCTTAGGGGACTGCAC+AGG | - | chr4_1:56049594-56049613 | Msa0557600:intron | 55.0% | |
| ! | ATTGGCCTGCCAACAAGGGA+CGG | + | chr4_1:56049629-56049648 | None:intergenic | 55.0% |
| ! | TACATCGGTGCCCATTGTCG+TGG | + | chr4_1:56050156-56050175 | None:intergenic | 55.0% |
| !! | CGACAATGGGCACCGATGTA+TGG | - | chr4_1:56050156-56050175 | Msa0557600:intron | 55.0% |
| ! | CGGCCATCTGGTTCGTCAAT+AGG | + | chr4_1:56050629-56050648 | None:intergenic | 55.0% |
| ATTGACGAACCAGATGGCCG+AGG | - | chr4_1:56050629-56050648 | Msa0557600:intron | 55.0% | |
| TGGTCCACCTGTGCCAACAA+GGG | - | chr4_1:56050982-56051001 | Msa0557600:CDS | 55.0% | |
| GCAGCAGGGTTCCACGAACA+AGG | + | chr4_1:56048905-56048924 | None:intergenic | 60.0% | |
| AACCTCCGTCCCTTGTTGGC+AGG | - | chr4_1:56049621-56049640 | Msa0557600:intron | 60.0% | |
| !! | GGTTGATTCGGGAAACCGGC+CGG | - | chr4_1:56050487-56050506 | Msa0557600:intron | 60.0% |
| TCGTAGTAGCCTCGGCCATC+TGG | + | chr4_1:56050641-56050660 | None:intergenic | 60.0% | |
| GTGGTCCACCTGTGCCAACA+AGG | - | chr4_1:56050981-56051000 | Msa0557600:CDS | 60.0% | |
| TTGGGAGCCCTTGTTGGCAC+AGG | + | chr4_1:56050992-56051011 | None:intergenic | 60.0% | |
| AGAGGTCCAGAGGATCCACC+AGG | - | chr4_1:56051046-56051065 | Msa0557600:CDS | 60.0% | |
| TCGGGAAACCGGCCGGTAAC+AGG | - | chr4_1:56050494-56050513 | Msa0557600:intron | 65.0% | |
| GGAGCCCTTGTTGGCACAGG+TGG | + | chr4_1:56050989-56051008 | None:intergenic | 65.0% | |
| GGCCTGCCAACAAGGGACGG+AGG | + | chr4_1:56049626-56049645 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 56047483 | 56051379 | 56047483 | ID=Msa0557600;Name=Msa0557600 |
| chr4_1 | mRNA | 56047483 | 56051379 | 56047483 | ID=Msa0557600-mRNA-1;Parent=Msa0557600;Name=Msa0557600-mRNA-1;_AED=0.07;_eAED=0.07;_QI=302|1|1|1|1|1|7|205|620 |
| chr4_1 | exon | 56047483 | 56048374 | 56047483 | ID=Msa0557600-mRNA-1:exon:16768;Parent=Msa0557600-mRNA-1 |
| chr4_1 | exon | 56048584 | 56048756 | 56048584 | ID=Msa0557600-mRNA-1:exon:16767;Parent=Msa0557600-mRNA-1 |
| chr4_1 | exon | 56048877 | 56049060 | 56048877 | ID=Msa0557600-mRNA-1:exon:16766;Parent=Msa0557600-mRNA-1 |
| chr4_1 | exon | 56049189 | 56049278 | 56049189 | ID=Msa0557600-mRNA-1:exon:16765;Parent=Msa0557600-mRNA-1 |
| chr4_1 | exon | 56049385 | 56049589 | 56049385 | ID=Msa0557600-mRNA-1:exon:16764;Parent=Msa0557600-mRNA-1 |
| chr4_1 | exon | 56049929 | 56050167 | 56049929 | ID=Msa0557600-mRNA-1:exon:16763;Parent=Msa0557600-mRNA-1 |
| chr4_1 | exon | 56050793 | 56051379 | 56050793 | ID=Msa0557600-mRNA-1:exon:16762;Parent=Msa0557600-mRNA-1 |
| chr4_1 | five_prime_UTR | 56051078 | 56051379 | 56051078 | ID=Msa0557600-mRNA-1:five_prime_utr;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56050793 | 56051077 | 56050793 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56049929 | 56050167 | 56049929 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56049385 | 56049589 | 56049385 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56049189 | 56049278 | 56049189 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56048877 | 56049060 | 56048877 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56048584 | 56048756 | 56048584 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | CDS | 56047688 | 56048374 | 56047688 | ID=Msa0557600-mRNA-1:cds;Parent=Msa0557600-mRNA-1 |
| chr4_1 | three_prime_UTR | 56047483 | 56047687 | 56047483 | ID=Msa0557600-mRNA-1:three_prime_utr;Parent=Msa0557600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
