Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653210 | AVR48489.1 | 75.000 | 96 | 21 | 2 | 60 | 154 | 68 | 161 | 4.41e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653210 | sp|P47192|VA722_ARATH | 60.417 | 96 | 35 | 2 | 60 | 154 | 64 | 157 | 1.42e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653210 | A0A2R3ZDI9 | 75.000 | 96 | 21 | 2 | 60 | 154 | 68 | 161 | 2.11e-38 | 142 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0653210 | TF | GRAS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0338270 | Msa0653210 | 0.802946 | 4.405986e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653210 | MtrunA17_Chr2g0291651 | 73.958 | 96 | 22 | 2 | 60 | 154 | 68 | 161 | 9.15e-42 | 141 |
| Msa0653210 | MtrunA17_Chr5g0396491 | 86.957 | 69 | 9 | 0 | 158 | 226 | 413 | 481 | 1.69e-37 | 136 |
| Msa0653210 | MtrunA17_Chr4g0043521 | 66.667 | 96 | 29 | 2 | 60 | 154 | 66 | 159 | 1.96e-36 | 127 |
| Msa0653210 | MtrunA17_Chr4g0038851 | 69.565 | 69 | 21 | 0 | 158 | 226 | 404 | 472 | 6.08e-29 | 112 |
| Msa0653210 | MtrunA17_Chr4g0010211 | 54.639 | 97 | 41 | 2 | 59 | 154 | 2 | 96 | 1.13e-28 | 104 |
| Msa0653210 | MtrunA17_Chr4g0010271 | 56.250 | 96 | 39 | 2 | 60 | 154 | 64 | 157 | 1.26e-28 | 107 |
| Msa0653210 | MtrunA17_Chr1g0169861 | 56.250 | 96 | 39 | 2 | 60 | 154 | 114 | 207 | 1.71e-27 | 105 |
| Msa0653210 | MtrunA17_Chr1g0169851 | 64.789 | 71 | 25 | 0 | 60 | 130 | 15 | 85 | 3.46e-27 | 101 |
| Msa0653210 | MtrunA17_Chr7g0237521 | 64.789 | 71 | 25 | 0 | 60 | 130 | 64 | 134 | 5.17e-27 | 103 |
| Msa0653210 | MtrunA17_Chr7g0237561 | 54.167 | 96 | 41 | 2 | 60 | 154 | 64 | 157 | 7.70e-26 | 100 |
| Msa0653210 | MtrunA17_Chr2g0296021 | 59.155 | 71 | 29 | 0 | 60 | 130 | 64 | 134 | 7.85e-23 | 92.4 |
| Msa0653210 | MtrunA17_Chr1g0210521 | 39.130 | 115 | 48 | 4 | 60 | 154 | 64 | 176 | 7.07e-17 | 76.6 |
| Msa0653210 | MtrunA17_Chr3g0085681 | 45.588 | 68 | 36 | 1 | 158 | 225 | 372 | 438 | 4.89e-13 | 67.4 |
| Msa0653210 | MtrunA17_Chr7g0224271 | 39.726 | 73 | 42 | 1 | 151 | 223 | 603 | 673 | 1.23e-11 | 63.5 |
| Msa0653210 | MtrunA17_Chr3g0085361 | 44.118 | 68 | 36 | 2 | 158 | 225 | 287 | 352 | 7.88e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0653210 | AT2G33110.2 | 71.429 | 70 | 20 | 0 | 60 | 129 | 64 | 133 | 8.39e-31 | 112 |
| Msa0653210 | AT2G33120.1 | 60.417 | 96 | 35 | 2 | 60 | 154 | 64 | 157 | 1.44e-30 | 112 |
| Msa0653210 | AT2G33110.1 | 70.423 | 71 | 21 | 0 | 60 | 130 | 64 | 134 | 3.06e-30 | 112 |
| Msa0653210 | AT2G32670.1 | 74.648 | 71 | 18 | 0 | 60 | 130 | 129 | 199 | 4.84e-30 | 113 |
| Msa0653210 | AT2G33120.2 | 59.375 | 96 | 36 | 2 | 60 | 154 | 72 | 165 | 5.76e-30 | 111 |
| Msa0653210 | AT1G04750.1 | 59.375 | 96 | 36 | 2 | 60 | 154 | 64 | 157 | 5.97e-30 | 111 |
| Msa0653210 | AT1G04760.2 | 71.831 | 71 | 20 | 0 | 60 | 130 | 64 | 134 | 2.74e-29 | 109 |
| Msa0653210 | AT1G04760.1 | 71.831 | 71 | 20 | 0 | 60 | 130 | 64 | 134 | 2.74e-29 | 109 |
| Msa0653210 | AT1G50420.1 | 66.667 | 69 | 23 | 0 | 158 | 226 | 414 | 482 | 2.57e-26 | 106 |
| Msa0653210 | AT4G15780.1 | 60.563 | 71 | 28 | 0 | 60 | 130 | 65 | 135 | 5.68e-23 | 92.0 |
| Msa0653210 | AT1G04750.2 | 58.025 | 81 | 31 | 2 | 75 | 154 | 1 | 79 | 1.37e-22 | 89.7 |
| Msa0653210 | AT1G04750.4 | 58.025 | 81 | 31 | 2 | 75 | 154 | 1 | 79 | 1.37e-22 | 89.7 |
| Msa0653210 | AT1G04750.3 | 58.025 | 81 | 31 | 2 | 75 | 154 | 1 | 79 | 1.37e-22 | 89.7 |
| Msa0653210 | AT3G54300.3 | 37.607 | 117 | 47 | 4 | 60 | 154 | 64 | 176 | 3.18e-14 | 69.7 |
| Msa0653210 | AT3G54300.2 | 37.607 | 117 | 47 | 4 | 60 | 154 | 64 | 176 | 3.18e-14 | 69.7 |
| Msa0653210 | AT3G54300.1 | 37.607 | 117 | 47 | 4 | 60 | 154 | 64 | 176 | 3.18e-14 | 69.7 |
Find 71 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCCTTGTTAAGGCTAT+TGG | 0.247487 | 4_3:-61150241 | None:intergenic |
| ACAAGAGGAAGAAGGGAAAT+TGG | 0.283668 | 4_3:+61149085 | Msa0653210:CDS |
| AATAGCCTTAACAAGGAGTT+TGG | 0.289067 | 4_3:+61150243 | Msa0653210:CDS |
| TGCATATGTTCCTTCAACTT+TGG | 0.333932 | 4_3:-61150351 | None:intergenic |
| AACTCCTTGTTAAGGCTATT+GGG | 0.344900 | 4_3:-61150240 | None:intergenic |
| TATAGAATGAGAGAAGAAAA+TGG | 0.356156 | 4_3:+61153335 | Msa0653210:CDS |
| AGACTTGATTCATGTGGATT+TGG | 0.364999 | 4_3:+61153242 | Msa0653210:CDS |
| AGAAGGTTTCTACAGGGTTA+TGG | 0.375050 | 4_3:+61153302 | Msa0653210:CDS |
| AAGGGAGGGAGAGGAGAAGA+AGG | 0.375659 | 4_3:+61149017 | Msa0653210:five_prime_UTR |
| TGTGCAGCTGGGTATTGTGC+TGG | 0.380986 | 4_3:+61149885 | Msa0653210:intron |
| CCTTGAGGCTATTCCATTTG+TGG | 0.382802 | 4_3:-61151918 | None:intergenic |
| TTAATGCAGGTTACCACAAA+TGG | 0.394064 | 4_3:+61151905 | Msa0653210:intron |
| AGAGAAAGTGACGGGGAGAA+AGG | 0.394710 | 4_3:+61148964 | Msa0653210:five_prime_UTR |
| GAATGAGAGAAGGGAGGGAG+AGG | 0.396417 | 4_3:+61149008 | Msa0653210:five_prime_UTR |
| GCCTCAAGGGTTGATGGATA+TGG | 0.399274 | 4_3:+61151932 | Msa0653210:CDS |
| GGGGAGAAAGGGAAAGTAAC+GGG | 0.417258 | 4_3:+61148976 | Msa0653210:five_prime_UTR |
| TTATATGAACAAGTTGGTCT+TGG | 0.432226 | 4_3:+61149579 | Msa0653210:CDS |
| AAGAAAAGAAGAGGAAACAG+TGG | 0.433575 | 4_3:+61149058 | Msa0653210:CDS |
| CAGTATACGATAATAGCTTA+AGG | 0.434273 | 4_3:-61153273 | None:intergenic |
| TAGTAACCTGCTGGCAGGAC+AGG | 0.439719 | 4_3:+61153363 | Msa0653210:CDS |
| TGAACAAGTTGGTCTTGGTT+GGG | 0.442711 | 4_3:+61149584 | Msa0653210:CDS |
| ATGAACAAGTTGGTCTTGGT+TGG | 0.452022 | 4_3:+61149583 | Msa0653210:CDS |
| GAGAAAGTGACGGGGAGAAA+GGG | 0.456228 | 4_3:+61148965 | Msa0653210:five_prime_UTR |
| AGGATATTATATGAACAAGT+TGG | 0.456734 | 4_3:+61149573 | Msa0653210:CDS |
| AAACAGAATGAGAGAAGGGA+GGG | 0.458886 | 4_3:+61149003 | Msa0653210:five_prime_UTR |
| GGAATAGCCTCAAGGGTTGA+TGG | 0.463256 | 4_3:+61151926 | Msa0653210:CDS |
| AACTAGAAGACAGGTTCCTA+TGG | 0.467041 | 4_3:+61150149 | Msa0653210:CDS |
| GCAGGCAAGAAGGTTTCTAC+AGG | 0.468697 | 4_3:+61153295 | Msa0653210:CDS |
| CAACAACAGTGTGGAGAGCT+AGG | 0.475812 | 4_3:+61153396 | Msa0653210:CDS |
| TCTGCACAGGCCAAAGTTGA+AGG | 0.478923 | 4_3:+61150341 | Msa0653210:intron |
| AGTACCCAAACTCCTTGTTA+AGG | 0.484076 | 4_3:-61150248 | None:intergenic |
| GGGAGAAAGGGAAAGTAACG+GGG | 0.497434 | 4_3:+61148977 | Msa0653210:five_prime_UTR |
| ATAGCCTTAACAAGGAGTTT+GGG | 0.499292 | 4_3:+61150244 | Msa0653210:CDS |
| AGTATACGATAATAGCTTAA+GGG | 0.507427 | 4_3:-61153272 | None:intergenic |
| CAAAGACCTGTCCTGCCAGC+AGG | 0.516037 | 4_3:-61153369 | None:intergenic |
| GTGCAGCTGGGTATTGTGCT+GGG | 0.521168 | 4_3:+61149886 | Msa0653210:intron |
| ACAGAAATAGAGAAAGTGAC+GGG | 0.523342 | 4_3:+61148956 | None:intergenic |
| GTCAAAATATGGTGGTGAAA+AGG | 0.526879 | 4_3:+61150203 | Msa0653210:CDS |
| ATCCTTGACACGCTCTCGAA+AGG | 0.532121 | 4_3:-61150172 | None:intergenic |
| GAAACAGAATGAGAGAAGGG+AGG | 0.533193 | 4_3:+61149002 | Msa0653210:five_prime_UTR |
| GGGAGAAACAGAATGAGAGA+AGG | 0.545191 | 4_3:+61148998 | Msa0653210:five_prime_UTR |
| ATCGTATACTGCAGGCAAGA+AGG | 0.553817 | 4_3:+61153285 | Msa0653210:CDS |
| GTGGGTAAACAAGAGGAAGA+AGG | 0.562399 | 4_3:+61149077 | Msa0653210:CDS |
| GAAGAAGGAAAAGAAGCCGA+TGG | 0.563967 | 4_3:+61149032 | Msa0653210:exon |
| GGAGAAACAGAATGAGAGAA+GGG | 0.566247 | 4_3:+61148999 | Msa0653210:five_prime_UTR |
| TTGTTCATATAATATCCTAA+AGG | 0.569597 | 4_3:-61149568 | None:intergenic |
| AAGCTATTATCGTATACTGC+AGG | 0.573353 | 4_3:+61153277 | Msa0653210:CDS |
| AGAAAAGAAGAGGAAACAGT+GGG | 0.574477 | 4_3:+61149059 | Msa0653210:CDS |
| CACAAATGGAATAGCCTCAA+GGG | 0.574895 | 4_3:+61151919 | Msa0653210:CDS |
| GCTGGGTATTGTGCTGGGAA+AGG | 0.576415 | 4_3:+61149891 | Msa0653210:intron |
| CGATGGAGAAAGAAAAGAAG+AGG | 0.576550 | 4_3:+61149049 | Msa0653210:exon |
| AAATTGGAGAAGAATATTCA+AGG | 0.576564 | 4_3:+61149101 | Msa0653210:CDS |
| ACACGCTCTCGAAAGGCCAT+AGG | 0.585706 | 4_3:-61150165 | None:intergenic |
| TGGTGTTGATCTCAAGAAAG+TGG | 0.588028 | 4_3:+61151952 | Msa0653210:CDS |
| AGATGAATCAACTAGAAGAC+AGG | 0.588785 | 4_3:+61150140 | Msa0653210:CDS |
| CCACAAATGGAATAGCCTCA+AGG | 0.595503 | 4_3:+61151918 | Msa0653210:CDS |
| TGGGTAAACAAGAGGAAGAA+GGG | 0.601125 | 4_3:+61149078 | Msa0653210:CDS |
| GGAAACAGTGGGTAAACAAG+AGG | 0.602503 | 4_3:+61149070 | Msa0653210:CDS |
| GTATACGATAATAGCTTAAG+GGG | 0.604591 | 4_3:-61153271 | None:intergenic |
| CAAGATAAGCAAGCTTGCAA+AGG | 0.611690 | 4_3:+61150395 | Msa0653210:CDS |
| GGAGAAAGGGAAAGTAACGG+GGG | 0.620875 | 4_3:+61148978 | Msa0653210:five_prime_UTR |
| GGCCTTTCGAGAGCGTGTCA+AGG | 0.624404 | 4_3:+61150170 | Msa0653210:CDS |
| TACAGAAATAGAGAAAGTGA+CGG | 0.628776 | 4_3:+61148955 | None:intergenic |
| CGGGGAGAAAGGGAAAGTAA+CGG | 0.645158 | 4_3:+61148975 | Msa0653210:five_prime_UTR |
| TCCTCCCAATAGCCTTAACA+AGG | 0.645443 | 4_3:+61150236 | Msa0653210:CDS |
| CAGGCAAGAAGGTTTCTACA+GGG | 0.650713 | 4_3:+61153296 | Msa0653210:CDS |
| CAGAAATAGAGAAAGTGACG+GGG | 0.669397 | 4_3:+61148957 | None:intergenic |
| TCCTTGTTAAGGCTATTGGG+AGG | 0.672970 | 4_3:-61150237 | None:intergenic |
| TCTATGAGACTTGATTCATG+TGG | 0.686839 | 4_3:+61153236 | Msa0653210:CDS |
| ACCATATCCATCAACCCTTG+AGG | 0.687454 | 4_3:-61151933 | None:intergenic |
| GTGCTGGGAAAGGCTAAGAG+TGG | 0.721903 | 4_3:+61149901 | Msa0653210:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTCTATAAATATTTC+TGG | + | chr4_3:61151761-61151780 | Msa0653210:intron | 10.0% |
| !! | TTGTAAGAAAATAAAAAAAA+AGG | - | chr4_3:61152520-61152539 | None:intergenic | 10.0% |
| !!! | TATAAAATTGATTACCTTTT+TGG | + | chr4_3:61150607-61150626 | Msa0653210:intron | 15.0% |
| !! | AAAATTACTATCTATGATTT+AGG | - | chr4_3:61151155-61151174 | None:intergenic | 15.0% |
| !!! | TAATTTTGACCAAAATAATT+TGG | + | chr4_3:61151168-61151187 | Msa0653210:intron | 15.0% |
| !! | AGATAAAATTCAAATGAAAT+GGG | - | chr4_3:61151663-61151682 | None:intergenic | 15.0% |
| !! | TAGATAAAATTCAAATGAAA+TGG | - | chr4_3:61151664-61151683 | None:intergenic | 15.0% |
| !! | ATTTGAATTGATAAATAGTA+GGG | - | chr4_3:61151725-61151744 | None:intergenic | 15.0% |
| !! | TATTTGAATTGATAAATAGT+AGG | - | chr4_3:61151726-61151745 | None:intergenic | 15.0% |
| !!! | ACTCTATTTATTTTAAGTAT+AGG | - | chr4_3:61151879-61151898 | None:intergenic | 15.0% |
| !! | CTATAAAACAAATCAAAAAA+GGG | - | chr4_3:61152142-61152161 | None:intergenic | 15.0% |
| !!! | CTTTTTTGATTTGTTTTATA+GGG | + | chr4_3:61152141-61152160 | Msa0653210:intron | 15.0% |
| !! | AAATCAAAAACTAAAATTTG+GGG | - | chr4_3:61152192-61152211 | None:intergenic | 15.0% |
| !! | CAAATCAAAAACTAAAATTT+GGG | - | chr4_3:61152193-61152212 | None:intergenic | 15.0% |
| !! | ACAAATCAAAAACTAAAATT+TGG | - | chr4_3:61152194-61152213 | None:intergenic | 15.0% |
| !!! | AGTTTTTGATTTGTTTTATT+CGG | + | chr4_3:61152200-61152219 | Msa0653210:intron | 15.0% |
| !!! | AGTTTGATTTTAAAATTAGA+AGG | - | chr4_3:61152410-61152429 | None:intergenic | 15.0% |
| !!! | GATTTTGATACATTTTTTTA+TGG | + | chr4_3:61153075-61153094 | Msa0653210:intron | 15.0% |
| !! | AATTGATTGATGAATAATAT+CGG | - | chr4_3:61153183-61153202 | None:intergenic | 15.0% |
| !!! | TATTTTTGTTTTTGCTTTTG+TGG | + | chr4_3:61149253-61149272 | Msa0653210:intron | 20.0% |
| !! | TTTGTGAAATTGACTAAAAT+TGG | + | chr4_3:61149421-61149440 | Msa0653210:intron | 20.0% |
| !! | GTAAAAATAGAATTTCATAC+TGG | - | chr4_3:61149542-61149561 | None:intergenic | 20.0% |
| !! | TTGTTCATATAATATCCTAA+AGG | - | chr4_3:61149571-61149590 | None:intergenic | 20.0% |
| !! | ATTCAATTACCACATATTAA+AGG | - | chr4_3:61149835-61149854 | None:intergenic | 20.0% |
| !! | TACCAAATAAACTTGTAAAA+GGG | - | chr4_3:61149859-61149878 | None:intergenic | 20.0% |
| !! | TAAGATGATAATTTCCTTTA+TGG | - | chr4_3:61149965-61149984 | None:intergenic | 20.0% |
| !! | TTTGATGGGATAAAAATTTA+TGG | + | chr4_3:61150669-61150688 | Msa0653210:intron | 20.0% |
| !! | TTGATGGGATAAAAATTTAT+GGG | + | chr4_3:61150670-61150689 | Msa0653210:intron | 20.0% |
| !! | GAAAATAAAAAAGAATGAAG+GGG | - | chr4_3:61150980-61150999 | None:intergenic | 20.0% |
| !! | GGAAAATAAAAAAGAATGAA+GGG | - | chr4_3:61150981-61151000 | None:intergenic | 20.0% |
| !! | AGGAAAATAAAAAAGAATGA+AGG | - | chr4_3:61150982-61151001 | None:intergenic | 20.0% |
| !! | AATATATAAATTAGGCTCAA+AGG | - | chr4_3:61151002-61151021 | None:intergenic | 20.0% |
| !! | ATATACATTCATTTAACCAT+TGG | + | chr4_3:61151027-61151046 | Msa0653210:intron | 20.0% |
| !! | ATAAGACAGTAAACAATTAT+TGG | + | chr4_3:61151395-61151414 | Msa0653210:intron | 20.0% |
| !!! | TATTGATTCTTAGTTAATTG+AGG | + | chr4_3:61151419-61151438 | Msa0653210:intron | 20.0% |
| !!! | TTTTATCTTTGTTGTTAGTT+TGG | + | chr4_3:61151566-61151585 | Msa0653210:intron | 20.0% |
| !! | CCTATAAAACAAATCAAAAA+AGG | - | chr4_3:61152143-61152162 | None:intergenic | 20.0% |
| !!! | CCTTTTTTGATTTGTTTTAT+AGG | + | chr4_3:61152140-61152159 | Msa0653210:intron | 20.0% |
| !!! | TTATTTTCTTACAATTTTGC+AGG | + | chr4_3:61152526-61152545 | Msa0653210:intron | 20.0% |
| !! | GCAATAGTAAATGTATAAAA+AGG | + | chr4_3:61153010-61153029 | Msa0653210:intron | 20.0% |
| !!! | TTGATACATTTTTTTATGGT+TGG | + | chr4_3:61153079-61153098 | Msa0653210:intron | 20.0% |
| !! | TGTACAAACTTGATAAAAAA+AGG | + | chr4_3:61153155-61153174 | Msa0653210:intron | 20.0% |
| !!! | AGTTTTTCATGTCTTTATTA+GGG | - | chr4_3:61153206-61153225 | None:intergenic | 20.0% |
| !!! | AAGTTTTTCATGTCTTTATT+AGG | - | chr4_3:61153207-61153226 | None:intergenic | 20.0% |
| ! | AAATTGGAGAAGAATATTCA+AGG | + | chr4_3:61149101-61149120 | Msa0653210:CDS | 25.0% |
| !!! | TTTGTTGTTGATTCTGTTTT+TGG | + | chr4_3:61149296-61149315 | Msa0653210:intron | 25.0% |
| !! | CTTGATGACTTAAAAATTGA+TGG | + | chr4_3:61149462-61149481 | Msa0653210:intron | 25.0% |
| !!! | TGAAATTCTATTTTTACTGC+AGG | + | chr4_3:61149545-61149564 | Msa0653210:intron | 25.0% |
| ! | AGGATATTATATGAACAAGT+TGG | + | chr4_3:61149573-61149592 | Msa0653210:CDS | 25.0% |
| !!! | TACTGGTTCATATTTTGTAA+TGG | - | chr4_3:61149616-61149635 | None:intergenic | 25.0% |
| !!! | TTTTTTCCTAATCATTCTGA+TGG | + | chr4_3:61149737-61149756 | Msa0653210:intron | 25.0% |
| !!! | TGATGGAGAATTGTTTTTAA+AGG | + | chr4_3:61149754-61149773 | Msa0653210:intron | 25.0% |
| ! | AATCTTAATATCAAGCTCTT+GGG | - | chr4_3:61149793-61149812 | None:intergenic | 25.0% |
| ! | AAATCTTAATATCAAGCTCT+TGG | - | chr4_3:61149794-61149813 | None:intergenic | 25.0% |
| !! | TTCCCTTTTACAAGTTTATT+TGG | + | chr4_3:61149854-61149873 | Msa0653210:intron | 25.0% |
| ! | GTACCAAATAAACTTGTAAA+AGG | - | chr4_3:61149860-61149879 | None:intergenic | 25.0% |
| ! | TAATAGGAGATTATCATCTT+AGG | + | chr4_3:61149936-61149955 | Msa0653210:intron | 25.0% |
| !! | AGAAGAAATGTCTAACTTTT+TGG | + | chr4_3:61150093-61150112 | Msa0653210:intron | 25.0% |
| !! | GAAGAAATGTCTAACTTTTT+GGG | + | chr4_3:61150094-61150113 | Msa0653210:intron | 25.0% |
| !! | GATGATTTTGTGTCAAAATA+TGG | + | chr4_3:61150192-61150211 | Msa0653210:CDS | 25.0% |
| !!! | TAAACTTTTGGAGTTTAATC+TGG | + | chr4_3:61150283-61150302 | Msa0653210:intron | 25.0% |
| !! | CTGGTAGACTATTTATATTT+TGG | + | chr4_3:61150302-61150321 | Msa0653210:intron | 25.0% |
| !!! | TACCTTTTTGGTTATATCAT+TGG | + | chr4_3:61150619-61150638 | Msa0653210:intron | 25.0% |
| ! | TTCGAACATTAAGAAAAGAA+GGG | - | chr4_3:61150949-61150968 | None:intergenic | 25.0% |
| ! | ATTCGAACATTAAGAAAAGA+AGG | - | chr4_3:61150950-61150969 | None:intergenic | 25.0% |
| ! | TTGAAAGCTAGTTAGAAAAA+AGG | - | chr4_3:61151269-61151288 | None:intergenic | 25.0% |
| ! | ATTATTTGAATCATTCGCTA+TGG | + | chr4_3:61151443-61151462 | Msa0653210:intron | 25.0% |
| !!! | TTTGTTGTTAGTTTGGATTT+GGG | + | chr4_3:61151573-61151592 | Msa0653210:intron | 25.0% |
| !! | CTTATCCTTTTTGATACATT+TGG | + | chr4_3:61151627-61151646 | Msa0653210:intron | 25.0% |
| ! | AACAACCAAATGTATCAAAA+AGG | - | chr4_3:61151635-61151654 | None:intergenic | 25.0% |
| !! | TATTATGACATTTTTGCAAG+AGG | - | chr4_3:61152061-61152080 | None:intergenic | 25.0% |
| !!! | TGAATGAGACTTATTTTCTT+AGG | + | chr4_3:61152095-61152114 | Msa0653210:intron | 25.0% |
| !!! | GAATGAGACTTATTTTCTTA+GGG | + | chr4_3:61152096-61152115 | Msa0653210:intron | 25.0% |
| !! | ACAATTTTGCAGGTTTTTTA+TGG | + | chr4_3:61152536-61152555 | Msa0653210:intron | 25.0% |
| !! | TTTTATGGAGAAATTCAGAT+TGG | + | chr4_3:61152551-61152570 | Msa0653210:intron | 25.0% |
| ! | AATAGCAACTTACAAATATG+AGG | - | chr4_3:61152813-61152832 | None:intergenic | 25.0% |
| ! | TATCCTTTCATTCAATCATA+TGG | + | chr4_3:61152935-61152954 | Msa0653210:intron | 25.0% |
| ! | GACATGAAAAACTTCATAAA+TGG | + | chr4_3:61153213-61153232 | Msa0653210:intron | 25.0% |
| ! | AGTATACGATAATAGCTTAA+GGG | - | chr4_3:61153275-61153294 | None:intergenic | 25.0% |
| ! | TATAGAATGAGAGAAGAAAA+TGG | + | chr4_3:61153335-61153354 | Msa0653210:CDS | 25.0% |
| ! | GTGATTTCTTGCTATATTGT+GGG | + | chr4_3:61149123-61149142 | Msa0653210:intron | 30.0% |
| ATATTGTGGGAATGCATAAT+TGG | + | chr4_3:61149136-61149155 | Msa0653210:intron | 30.0% | |
| TGGCTTATGATGAATATTCA+AGG | + | chr4_3:61149156-61149175 | Msa0653210:intron | 30.0% | |
| !!! | TTGTTTTTGCTTTTGTGGTT+TGG | + | chr4_3:61149258-61149277 | Msa0653210:intron | 30.0% |
| !!! | TTTTGAGATGAAATCACACT+TGG | + | chr4_3:61149378-61149397 | Msa0653210:intron | 30.0% |
| CTTGGTATAAATTGCACATA+AGG | + | chr4_3:61149396-61149415 | Msa0653210:intron | 30.0% | |
| TGATATATGAATCTGTTCAG+TGG | + | chr4_3:61149502-61149521 | Msa0653210:intron | 30.0% | |
| !! | TTATATGAACAAGTTGGTCT+TGG | + | chr4_3:61149579-61149598 | Msa0653210:CDS | 30.0% |
| CTATTCCATCTTTCTAAGTA+TGG | - | chr4_3:61149649-61149668 | None:intergenic | 30.0% | |
| AATTCTCCATCAGAATGATT+AGG | - | chr4_3:61149746-61149765 | None:intergenic | 30.0% | |
| CACAATGTTCCTTTAATATG+TGG | + | chr4_3:61149823-61149842 | Msa0653210:intron | 30.0% | |
| ATAATCTCCTATTAGTACTC+TGG | - | chr4_3:61149930-61149949 | None:intergenic | 30.0% | |
| ATCATCTTAGGTAACCATAA+AGG | + | chr4_3:61149948-61149967 | Msa0653210:intron | 30.0% | |
| ! | GATTTTGTGTCAAAATATGG+TGG | + | chr4_3:61150195-61150214 | Msa0653210:CDS | 30.0% |
| !! | AACTTTCTGCTCTAAACTTT+TGG | + | chr4_3:61150271-61150290 | Msa0653210:intron | 30.0% |
| ! | CATGATGGAGAATATTGAAA+AGG | + | chr4_3:61150450-61150469 | Msa0653210:intron | 30.0% |
| TCAAGTCAATGTTATCATAG+AGG | + | chr4_3:61150494-61150513 | Msa0653210:intron | 30.0% | |
| TCATTGATGAGAATTGTTAG+AGG | + | chr4_3:61150520-61150539 | Msa0653210:intron | 30.0% | |
| CACCAATGATATAACCAAAA+AGG | - | chr4_3:61150624-61150643 | None:intergenic | 30.0% | |
| TGCTTGAATTGTGTATTTGA+TGG | + | chr4_3:61150654-61150673 | Msa0653210:intron | 30.0% | |
| GCTTGAATTGTGTATTTGAT+GGG | + | chr4_3:61150655-61150674 | Msa0653210:intron | 30.0% | |
| AAATGTAGAGAAAGAAGGAA+CGG | - | chr4_3:61150771-61150790 | None:intergenic | 30.0% | |
| AGAGAAAATGTAGAGAAAGA+AGG | - | chr4_3:61150776-61150795 | None:intergenic | 30.0% | |
| TCGAACATTAAGAAAAGAAG+GGG | - | chr4_3:61150948-61150967 | None:intergenic | 30.0% | |
| CCAAAATTCAGAAATTCCAA+TGG | - | chr4_3:61151046-61151065 | None:intergenic | 30.0% | |
| ! | CCATTGGAATTTCTGAATTT+TGG | + | chr4_3:61151043-61151062 | Msa0653210:intron | 30.0% |
| TTCTATTAATTGCCTCACTA+TGG | + | chr4_3:61151243-61151262 | Msa0653210:intron | 30.0% | |
| TTAACTACAGTAGAGATTCT+TGG | + | chr4_3:61151304-61151323 | Msa0653210:intron | 30.0% | |
| AAATCATTAGAGAAATGCCA+AGG | - | chr4_3:61151472-61151491 | None:intergenic | 30.0% | |
| !! | CTTTGTTGTTAGTTTGGATT+TGG | + | chr4_3:61151572-61151591 | Msa0653210:intron | 30.0% |
| ! | ATAGAGTTTTTCCTTAATGC+AGG | + | chr4_3:61151892-61151911 | Msa0653210:intron | 30.0% |
| GTTAGCATTGTTATCACAAT+TGG | - | chr4_3:61152318-61152337 | None:intergenic | 30.0% | |
| ! | ATGCTAACATCATTTTCCAT+TGG | + | chr4_3:61152330-61152349 | Msa0653210:intron | 30.0% |
| TAGTAAAATGTCCTCTTTCT+AGG | + | chr4_3:61152353-61152372 | Msa0653210:intron | 30.0% | |
| AATTCAGATTGGTACTCATT+TGG | + | chr4_3:61152562-61152581 | Msa0653210:intron | 30.0% | |
| ATTCAGATTGGTACTCATTT+GGG | + | chr4_3:61152563-61152582 | Msa0653210:intron | 30.0% | |
| ACATTCAACACATACAAATC+AGG | - | chr4_3:61152671-61152690 | None:intergenic | 30.0% | |
| ! | GTATGTGTTGAATGTTGTTT+AGG | + | chr4_3:61152676-61152695 | Msa0653210:intron | 30.0% |
| ACACCATATGATTGAATGAA+AGG | - | chr4_3:61152941-61152960 | None:intergenic | 30.0% | |
| TTGCAATTAAATTGCTGCAT+GGG | + | chr4_3:61153033-61153052 | Msa0653210:intron | 30.0% | |
| GTATACGATAATAGCTTAAG+GGG | - | chr4_3:61153274-61153293 | None:intergenic | 30.0% | |
| CAGTATACGATAATAGCTTA+AGG | - | chr4_3:61153276-61153295 | None:intergenic | 30.0% | |
| ! | CTCTTCTTTTCTTTCTCCAT+CGG | - | chr4_3:61149051-61149070 | None:intergenic | 35.0% |
| AAGAAAAGAAGAGGAAACAG+TGG | + | chr4_3:61149058-61149077 | Msa0653210:CDS | 35.0% | |
| AGAAAAGAAGAGGAAACAGT+GGG | + | chr4_3:61149059-61149078 | Msa0653210:CDS | 35.0% | |
| ! | GGTGATTTCTTGCTATATTG+TGG | + | chr4_3:61149122-61149141 | Msa0653210:intron | 35.0% |
| !!! | CTTTTGTGGTTTGGTGATTA+TGG | + | chr4_3:61149267-61149286 | Msa0653210:intron | 35.0% |
| !! | TATTTTTACTGCAGGCCTTT+AGG | + | chr4_3:61149553-61149572 | Msa0653210:intron | 35.0% |
| TCCTACCATACTTAGAAAGA+TGG | + | chr4_3:61149641-61149660 | Msa0653210:intron | 35.0% | |
| TCCATCTTTCTAAGTATGGT+AGG | - | chr4_3:61149645-61149664 | None:intergenic | 35.0% | |
| ! | TCCAGCATTTATGTTTTCAG+AGG | + | chr4_3:61149993-61150012 | Msa0653210:intron | 35.0% |
| ! | ACCTCTGAAAACATAAATGC+TGG | - | chr4_3:61149997-61150016 | None:intergenic | 35.0% |
| AGATGAATCAACTAGAAGAC+AGG | + | chr4_3:61150140-61150159 | Msa0653210:CDS | 35.0% | |
| ! | GTCAAAATATGGTGGTGAAA+AGG | + | chr4_3:61150203-61150222 | Msa0653210:CDS | 35.0% |
| AACTCCTTGTTAAGGCTATT+GGG | - | chr4_3:61150243-61150262 | None:intergenic | 35.0% | |
| AAACTCCTTGTTAAGGCTAT+TGG | - | chr4_3:61150244-61150263 | None:intergenic | 35.0% | |
| ! | AATAGCCTTAACAAGGAGTT+TGG | + | chr4_3:61150243-61150262 | Msa0653210:CDS | 35.0% |
| ! | ATAGCCTTAACAAGGAGTTT+GGG | + | chr4_3:61150244-61150263 | Msa0653210:CDS | 35.0% |
| TGCATATGTTCCTTCAACTT+TGG | - | chr4_3:61150354-61150373 | None:intergenic | 35.0% | |
| !! | TGAAGTTAAAGGTGTCATGA+TGG | + | chr4_3:61150435-61150454 | Msa0653210:intron | 35.0% |
| TGCTAATTCTCTAACACAGA+TGG | + | chr4_3:61150562-61150581 | Msa0653210:intron | 35.0% | |
| !!! | CTCTAACACAGATGGTTTTT+TGG | + | chr4_3:61150570-61150589 | Msa0653210:intron | 35.0% |
| AATGTAGAGAAAGAAGGAAC+GGG | - | chr4_3:61150770-61150789 | None:intergenic | 35.0% | |
| !! | TTCTGAATTTTGGCCTGATA+CGG | + | chr4_3:61151053-61151072 | Msa0653210:intron | 35.0% |
| ! | TCAGGCACACCAAATTATTT+TGG | - | chr4_3:61151180-61151199 | None:intergenic | 35.0% |
| ! | CACAGTCAAGATAACTTTTC+AGG | - | chr4_3:61151198-61151217 | None:intergenic | 35.0% |
| TTAGAAAAAAGGCCATAGTG+AGG | - | chr4_3:61151258-61151277 | None:intergenic | 35.0% | |
| TTTGGATTTGGGCATAGATT+CGG | + | chr4_3:61151584-61151603 | Msa0653210:intron | 35.0% | |
| ATTTGTGGTAACCTGCATTA+AGG | - | chr4_3:61151906-61151925 | None:intergenic | 35.0% | |
| TTAATGCAGGTTACCACAAA+TGG | + | chr4_3:61151905-61151924 | Msa0653210:intron | 35.0% | |
| GTGGTAGAAAAAGTAGAACA+TGG | + | chr4_3:61151971-61151990 | Msa0653210:CDS | 35.0% | |
| ! | AGTAGAACATGGTTTGTAAC+TGG | + | chr4_3:61151982-61152001 | Msa0653210:intron | 35.0% |
| ACAAATACTCAAGAAGCCAT+TGG | - | chr4_3:61152036-61152055 | None:intergenic | 35.0% | |
| ! | ACTAAAATTTGGGGTTCAAC+TGG | - | chr4_3:61152183-61152202 | None:intergenic | 35.0% |
| ! | AGAGGACATTTTACTACCAA+TGG | - | chr4_3:61152349-61152368 | None:intergenic | 35.0% |
| TAACAAACTCTCCTAGAAAG+AGG | - | chr4_3:61152367-61152386 | None:intergenic | 35.0% | |
| ACAGACTTATCACAATTGAG+AGG | - | chr4_3:61152461-61152480 | None:intergenic | 35.0% | |
| !!! | ATTTGGGAAGTTGTTTTTGC+AGG | + | chr4_3:61152579-61152598 | Msa0653210:intron | 35.0% |
| CATACAAATCAGGACATATG+AGG | - | chr4_3:61152661-61152680 | None:intergenic | 35.0% | |
| ! | TGTTGAATGTTGTTTAGGAG+AGG | + | chr4_3:61152681-61152700 | Msa0653210:intron | 35.0% |
| TGCTTCCAATTCACATGAAT+AGG | + | chr4_3:61152710-61152729 | Msa0653210:intron | 35.0% | |
| GCTTCCAATTCACATGAATA+GGG | + | chr4_3:61152711-61152730 | Msa0653210:intron | 35.0% | |
| CTTCCAATTCACATGAATAG+GGG | + | chr4_3:61152712-61152731 | Msa0653210:intron | 35.0% | |
| TAGTTACATGCCTCTGAATT+TGG | + | chr4_3:61152859-61152878 | Msa0653210:intron | 35.0% | |
| GTTGCAATTAAATTGCTGCA+TGG | + | chr4_3:61153032-61153051 | Msa0653210:intron | 35.0% | |
| TCTATGAGACTTGATTCATG+TGG | + | chr4_3:61153236-61153255 | Msa0653210:CDS | 35.0% | |
| AGACTTGATTCATGTGGATT+TGG | + | chr4_3:61153242-61153261 | Msa0653210:CDS | 35.0% | |
| AAGCTATTATCGTATACTGC+AGG | + | chr4_3:61153277-61153296 | Msa0653210:CDS | 35.0% | |
| !!! | CTTTGTTTTCAACAACAGTG+TGG | + | chr4_3:61153387-61153406 | Msa0653210:CDS | 35.0% |
| GGAGAAACAGAATGAGAGAA+GGG | + | chr4_3:61148999-61149018 | Msa0653210:five_prime_UTR | 40.0% | |
| AAACAGAATGAGAGAAGGGA+GGG | + | chr4_3:61149003-61149022 | Msa0653210:five_prime_UTR | 40.0% | |
| CGATGGAGAAAGAAAAGAAG+AGG | + | chr4_3:61149049-61149068 | Msa0653210:exon | 40.0% | |
| TGGGTAAACAAGAGGAAGAA+GGG | + | chr4_3:61149078-61149097 | Msa0653210:CDS | 40.0% | |
| ACAAGAGGAAGAAGGGAAAT+TGG | + | chr4_3:61149085-61149104 | Msa0653210:CDS | 40.0% | |
| ! | CATTCAATCTGAGACATGCA+TGG | - | chr4_3:61149212-61149231 | None:intergenic | 40.0% |
| !! | ATGAACAAGTTGGTCTTGGT+TGG | + | chr4_3:61149583-61149602 | Msa0653210:CDS | 40.0% |
| !! | TGAACAAGTTGGTCTTGGTT+GGG | + | chr4_3:61149584-61149603 | Msa0653210:CDS | 40.0% |
| AGTATGGTAGGATGACTTAC+TGG | - | chr4_3:61149633-61149652 | None:intergenic | 40.0% | |
| AACTAGAAGACAGGTTCCTA+TGG | + | chr4_3:61150149-61150168 | Msa0653210:CDS | 40.0% | |
| AGTACCCAAACTCCTTGTTA+AGG | - | chr4_3:61150251-61150270 | None:intergenic | 40.0% | |
| CAAGATAAGCAAGCTTGCAA+AGG | + | chr4_3:61150395-61150414 | Msa0653210:CDS | 40.0% | |
| !! | GCTCAGGTTTCTGAAGTTAA+AGG | + | chr4_3:61150424-61150443 | Msa0653210:intron | 40.0% |
| ATGTAGAGAAAGAAGGAACG+GGG | - | chr4_3:61150769-61150788 | None:intergenic | 40.0% | |
| CTCTTAATCACTACCTGTAG+TGG | - | chr4_3:61150842-61150861 | None:intergenic | 40.0% | |
| GACTGGATTTGTCTCAAGTA+TGG | + | chr4_3:61151084-61151103 | Msa0653210:intron | 40.0% | |
| ATCATTCGCTATGGTTTCCT+TGG | + | chr4_3:61151452-61151471 | Msa0653210:intron | 40.0% | |
| TGTGATACCATGCTGAAGTA+GGG | - | chr4_3:61151793-61151812 | None:intergenic | 40.0% | |
| ATGTGATACCATGCTGAAGT+AGG | - | chr4_3:61151794-61151813 | None:intergenic | 40.0% | |
| CACAAATGGAATAGCCTCAA+GGG | + | chr4_3:61151919-61151938 | Msa0653210:CDS | 40.0% | |
| !! | TGGTGTTGATCTCAAGAAAG+TGG | + | chr4_3:61151952-61151971 | Msa0653210:CDS | 40.0% |
| ATAGACAAAGCAGTATACCC+AGG | - | chr4_3:61152008-61152027 | None:intergenic | 40.0% | |
| GCTTTGTCTATTGCAACCAA+TGG | + | chr4_3:61152017-61152036 | Msa0653210:intron | 40.0% | |
| CATCCCCTATTCATGTGAAT+TGG | - | chr4_3:61152718-61152737 | None:intergenic | 40.0% | |
| CAATTCACATGAATAGGGGA+TGG | + | chr4_3:61152716-61152735 | Msa0653210:intron | 40.0% | |
| GATGTGTGAACCAAATTCAG+AGG | - | chr4_3:61152872-61152891 | None:intergenic | 40.0% | |
| ! | ATTGCTGCATGGGTTATGAT+AGG | + | chr4_3:61153043-61153062 | Msa0653210:intron | 40.0% |
| AGAAGGTTTCTACAGGGTTA+TGG | + | chr4_3:61153302-61153321 | Msa0653210:CDS | 40.0% | |
| !!! | ATGGTTTTGTAGTAACCTGC+TGG | + | chr4_3:61153354-61153373 | Msa0653210:CDS | 40.0% |
| GGGAGAAACAGAATGAGAGA+AGG | + | chr4_3:61148998-61149017 | Msa0653210:five_prime_UTR | 45.0% | |
| GAAACAGAATGAGAGAAGGG+AGG | + | chr4_3:61149002-61149021 | Msa0653210:five_prime_UTR | 45.0% | |
| GAAGAAGGAAAAGAAGCCGA+TGG | + | chr4_3:61149032-61149051 | Msa0653210:exon | 45.0% | |
| GGAAACAGTGGGTAAACAAG+AGG | + | chr4_3:61149070-61149089 | Msa0653210:CDS | 45.0% | |
| GTGGGTAAACAAGAGGAAGA+AGG | + | chr4_3:61149077-61149096 | Msa0653210:CDS | 45.0% | |
| ! | GTGGTGACCAGAGTACTAAT+AGG | + | chr4_3:61149920-61149939 | Msa0653210:intron | 45.0% |
| !! | ATGCTGCTGCTTTAGTTCAC+TGG | + | chr4_3:61150062-61150081 | Msa0653210:intron | 45.0% |
| ! | TCCTCCCAATAGCCTTAACA+AGG | + | chr4_3:61150236-61150255 | Msa0653210:CDS | 45.0% |
| TCCTTGTTAAGGCTATTGGG+AGG | - | chr4_3:61150240-61150259 | None:intergenic | 45.0% | |
| CTTGCAAAGGTGAAAAGCTC+AGG | + | chr4_3:61150408-61150427 | Msa0653210:intron | 45.0% | |
| TGTAGAGAAAGAAGGAACGG+GGG | - | chr4_3:61150768-61150787 | None:intergenic | 45.0% | |
| GATGAGCTTAGTTCCACTAC+AGG | + | chr4_3:61150826-61150845 | Msa0653210:intron | 45.0% | |
| CCTTGAGGCTATTCCATTTG+TGG | - | chr4_3:61151921-61151940 | None:intergenic | 45.0% | |
| CCACAAATGGAATAGCCTCA+AGG | + | chr4_3:61151918-61151937 | Msa0653210:CDS | 45.0% | |
| ACCATATCCATCAACCCTTG+AGG | - | chr4_3:61151936-61151955 | None:intergenic | 45.0% | |
| ! | AACATGGTTTGTAACTGGCC+TGG | + | chr4_3:61151987-61152006 | Msa0653210:intron | 45.0% |
| ! | ACATGGTTTGTAACTGGCCT+GGG | + | chr4_3:61151988-61152007 | Msa0653210:intron | 45.0% |
| GAGGCTGCACAATATCTTAG+AGG | - | chr4_3:61152442-61152461 | None:intergenic | 45.0% | |
| TCACATGAATAGGGGATGGA+AGG | + | chr4_3:61152720-61152739 | Msa0653210:intron | 45.0% | |
| ACTGCTGCATCTTATGCAAG+AGG | + | chr4_3:61152765-61152784 | Msa0653210:intron | 45.0% | |
| ATCGTATACTGCAGGCAAGA+AGG | + | chr4_3:61153285-61153304 | Msa0653210:CDS | 45.0% | |
| CAGGCAAGAAGGTTTCTACA+GGG | + | chr4_3:61153296-61153315 | Msa0653210:CDS | 45.0% | |
| ! | TTTTGTAGTAACCTGCTGGC+AGG | + | chr4_3:61153358-61153377 | Msa0653210:CDS | 45.0% |
| !! | TATAAAACAATATATAAATT+AGG | - | chr4_3:61151010-61151029 | None:intergenic | 5.0% |
| ! | AGAGAAAGTGACGGGGAGAA+AGG | + | chr4_3:61148964-61148983 | Msa0653210:five_prime_UTR | 50.0% |
| ! | GAGAAAGTGACGGGGAGAAA+GGG | + | chr4_3:61148965-61148984 | Msa0653210:five_prime_UTR | 50.0% |
| CGGGGAGAAAGGGAAAGTAA+CGG | + | chr4_3:61148975-61148994 | Msa0653210:five_prime_UTR | 50.0% | |
| GGGGAGAAAGGGAAAGTAAC+GGG | + | chr4_3:61148976-61148995 | Msa0653210:five_prime_UTR | 50.0% | |
| GGGAGAAAGGGAAAGTAACG+GGG | + | chr4_3:61148977-61148996 | Msa0653210:five_prime_UTR | 50.0% | |
| GGAGAAAGGGAAAGTAACGG+GGG | + | chr4_3:61148978-61148997 | Msa0653210:five_prime_UTR | 50.0% | |
| TTGGTACTGTTCTGTGCAGC+TGG | + | chr4_3:61149873-61149892 | Msa0653210:intron | 50.0% | |
| TGGTACTGTTCTGTGCAGCT+GGG | + | chr4_3:61149874-61149893 | Msa0653210:intron | 50.0% | |
| !! | CTGCTGCTTTAGTTCACTGG+CGG | + | chr4_3:61150065-61150084 | Msa0653210:intron | 50.0% |
| ATCCTTGACACGCTCTCGAA+AGG | - | chr4_3:61150175-61150194 | None:intergenic | 50.0% | |
| ATGTGTCAACCTCTCTGCAC+AGG | + | chr4_3:61150328-61150347 | Msa0653210:intron | 50.0% | |
| TCTGCACAGGCCAAAGTTGA+AGG | + | chr4_3:61150341-61150360 | Msa0653210:intron | 50.0% | |
| ACGGGGGATTAGAAGAGATG+AGG | - | chr4_3:61150752-61150771 | None:intergenic | 50.0% | |
| ACAAGCACAACAGCAGAGGT+TGG | + | chr4_3:61150863-61150882 | Msa0653210:intron | 50.0% | |
| CAACAGCAGAGGTTGGACAA+AGG | + | chr4_3:61150870-61150889 | Msa0653210:intron | 50.0% | |
| TTGGCCTGATACGGCTGATA+CGG | + | chr4_3:61151062-61151081 | Msa0653210:intron | 50.0% | |
| GGATTTGGGCATAGATTCGG+AGG | + | chr4_3:61151587-61151606 | Msa0653210:intron | 50.0% | |
| GATGCTTCCCTACTTCAGCA+TGG | + | chr4_3:61151783-61151802 | Msa0653210:intron | 50.0% | |
| GGAATAGCCTCAAGGGTTGA+TGG | + | chr4_3:61151926-61151945 | Msa0653210:CDS | 50.0% | |
| !! | GCCTCAAGGGTTGATGGATA+TGG | + | chr4_3:61151932-61151951 | Msa0653210:CDS | 50.0% |
| !! | GCAAGAGGTACTAGCAGCAA+TGG | + | chr4_3:61152780-61152799 | Msa0653210:intron | 50.0% |
| GCAGGCAAGAAGGTTTCTAC+AGG | + | chr4_3:61153295-61153314 | Msa0653210:CDS | 50.0% | |
| CAACAACAGTGTGGAGAGCT+AGG | + | chr4_3:61153396-61153415 | Msa0653210:CDS | 50.0% | |
| GAATGAGAGAAGGGAGGGAG+AGG | + | chr4_3:61149008-61149027 | Msa0653210:five_prime_UTR | 55.0% | |
| AAGGGAGGGAGAGGAGAAGA+AGG | + | chr4_3:61149017-61149036 | Msa0653210:five_prime_UTR | 55.0% | |
| ! | TGTGCAGCTGGGTATTGTGC+TGG | + | chr4_3:61149885-61149904 | Msa0653210:intron | 55.0% |
| ! | GTGCAGCTGGGTATTGTGCT+GGG | + | chr4_3:61149886-61149905 | Msa0653210:intron | 55.0% |
| ! | GCTGGGTATTGTGCTGGGAA+AGG | + | chr4_3:61149891-61149910 | Msa0653210:intron | 55.0% |
| GTGCTGGGAAAGGCTAAGAG+TGG | + | chr4_3:61149901-61149920 | Msa0653210:CDS | 55.0% | |
| ACACGCTCTCGAAAGGCCAT+AGG | - | chr4_3:61150168-61150187 | None:intergenic | 55.0% | |
| CAACTTTGGCCTGTGCAGAG+AGG | - | chr4_3:61150340-61150359 | None:intergenic | 55.0% | |
| GAGCACAAGCACAACAGCAG+AGG | + | chr4_3:61150859-61150878 | Msa0653210:intron | 55.0% | |
| CAGTCCGTATCAGCCGTATC+AGG | - | chr4_3:61151069-61151088 | None:intergenic | 55.0% | |
| CTGATACGGCTGATACGGAC+TGG | + | chr4_3:61151067-61151086 | Msa0653210:intron | 55.0% | |
| TAGTAACCTGCTGGCAGGAC+AGG | + | chr4_3:61153363-61153382 | Msa0653210:CDS | 55.0% | |
| ! | GGCCTTTCGAGAGCGTGTCA+AGG | + | chr4_3:61150170-61150189 | Msa0653210:CDS | 60.0% |
| CAAAGACCTGTCCTGCCAGC+AGG | - | chr4_3:61153372-61153391 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 61148960 | 61153421 | 61148960 | ID=Msa0653210;Name=Msa0653210 |
| chr4_3 | mRNA | 61148960 | 61153421 | 61148960 | ID=Msa0653210-mRNA-1;Parent=Msa0653210;Name=Msa0653210-mRNA-1;_AED=0.41;_eAED=0.41;_QI=91|0|0|0.57|0.83|0.71|7|0|226 |
| chr4_3 | exon | 61148960 | 61149122 | 61148960 | ID=Msa0653210-mRNA-1:exon:16687;Parent=Msa0653210-mRNA-1 |
| chr4_3 | exon | 61149567 | 61149632 | 61149567 | ID=Msa0653210-mRNA-1:exon:16688;Parent=Msa0653210-mRNA-1 |
| chr4_3 | exon | 61149892 | 61149931 | 61149892 | ID=Msa0653210-mRNA-1:exon:16689;Parent=Msa0653210-mRNA-1 |
| chr4_3 | exon | 61150124 | 61150265 | 61150124 | ID=Msa0653210-mRNA-1:exon:16690;Parent=Msa0653210-mRNA-1 |
| chr4_3 | exon | 61150350 | 61150416 | 61150350 | ID=Msa0653210-mRNA-1:exon:16691;Parent=Msa0653210-mRNA-1 |
| chr4_3 | exon | 61151914 | 61151996 | 61151914 | ID=Msa0653210-mRNA-1:exon:16692;Parent=Msa0653210-mRNA-1 |
| chr4_3 | exon | 61153214 | 61153421 | 61153214 | ID=Msa0653210-mRNA-1:exon:16693;Parent=Msa0653210-mRNA-1 |
| chr4_3 | five_prime_UTR | 61148960 | 61149050 | 61148960 | ID=Msa0653210-mRNA-1:five_prime_utr;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61149051 | 61149122 | 61149051 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61149567 | 61149632 | 61149567 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61149892 | 61149931 | 61149892 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61150124 | 61150265 | 61150124 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61150350 | 61150416 | 61150350 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61151914 | 61151996 | 61151914 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| chr4_3 | CDS | 61153214 | 61153421 | 61153214 | ID=Msa0653210-mRNA-1:cds;Parent=Msa0653210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
